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Milham M, Petkov C, Belin P, Ben Hamed S, Evrard H, Fair D, Fox A, Froudist-Walsh S, Hayashi T, Kastner S, Klink C, Majka P, Mars R, Messinger A, Poirier C, Schroeder C, Shmuel A, Silva AC, Vanduffel W, Van Essen DC, Wang Z, Roe AW, Wilke M, Xu T, Aarabi MH, Adolphs R, Ahuja A, Alvand A, Amiez C, Autio J, Azadi R, Baeg E, Bai R, Bao P, Basso M, Behel AK, Bennett Y, Bernhardt B, Biswal B, Boopathy S, Boretius S, Borra E, Boshra R, Buffalo E, Cao L, Cavanaugh J, Celine A, Chavez G, Chen LM, Chen X, Cheng L, Chouinard-Decorte F, Clavagnier S, Cléry J, Colcombe SJ, Conway B, Cordeau M, Coulon O, Cui Y, Dadarwal R, Dahnke R, Desrochers T, Deying L, Dougherty K, Doyle H, Drzewiecki CM, Duyck M, Arachchi WE, Elorette C, Essamlali A, Evans A, Fajardo A, Figueroa H, Franco A, Freches G, Frey S, Friedrich P, Fujimoto A, Fukunaga M, Gacoin M, Gallardo G, Gao L, Gao Y, Garside D, Garza-Villarreal EA, Gaudet-Trafit M, Gerbella M, Giavasis S, Glen D, Ribeiro Gomes AR, Torrecilla SG, Gozzi A, Gulli R, Haber S, Hadj-Bouziane F, Fujimoto SH, Hawrylycz M, He Q, He Y, Heuer K, Hiba B, Hoffstaedter F, Hong SJ, Hori Y, Hou Y, Howard A, de la Iglesia-Vaya M, Ikeda T, Jankovic-Rapan L, Jaramillo J, Jedema HP, Jin H, Jiang M, Jung B, Kagan I, Kahn I, Kiar G, Kikuchi Y, Kilavik B, Kimura N, Klatzmann U, Kwok SC, Lai HY, Lamberton F, Lehman J, Li P, Li X, Li X, Liang Z, Liston C, Little R, Liu C, Liu N, Liu X, Liu X, Lu H, Loh KK, Madan C, Magrou L, Margulies D, Mathilda F, Mejia S, Meng Y, Menon R, Meunier D, Mitchell A, Mitchell A, Murphy A, Mvula T, Ortiz-Rios M, Ortuzar Martinez DE, Pagani M, Palomero-Gallagher N, Pareek V, Perkins P, Ponce F, Postans M, Pouget P, Qian M, Ramirez J“B, Raven E, Restrepo I, Rima S, Rockland K, Rodriguez NY, Roger E, Hortelano ER, Rosa M, Rossi A, Rudebeck P, Russ B, Sakai T, Saleem KS, Sallet J, Sawiak S, Schaeffer D, Schwiedrzik CM, Seidlitz J, Sein J, Sharma J, Shen K, Sheng WA, Shi NS, Shim WM, Simone L, Sirmpilatze N, Sivan V, Song X, Tanenbaum A, Tasserie J, Taylor P, Tian X, Toro R, Trambaiolli L, Upright N, Vezoli J, Vickery S, Villalon J, Wang X, Wang Y, Weiss AR, Wilson C, Wong TY, Woo CW, Wu B, Xiao D, Xu AG, Xu D, Xufeng Z, Yacoub E, Ye N, Ying Z, Yokoyama C, Yu X, Yue S, Yuheng L, Yumeng X, Zaldivar D, Zhang S, Zhao Y, Zuo Z. Toward next-generation primate neuroscience: A collaboration-based strategic plan for integrative neuroimaging. Neuron 2022; 110:16-20. [PMID: 34731649 DOI: 10.1016/j.neuron.2021.10.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 09/30/2021] [Accepted: 10/11/2021] [Indexed: 12/22/2022]
Abstract
Open science initiatives are creating opportunities to increase research coordination and impact in nonhuman primate (NHP) imaging. The PRIMatE Data and Resource Exchange community recently developed a collaboration-based strategic plan to advance NHP imaging as an integrative approach for multiscale neuroscience.
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DeFelipe J, López-Cruz PL, Benavides-Piccione R, Bielza C, Larrañaga P, Anderson S, Burkhalter A, Cauli B, Fairén A, Feldmeyer D, Fishell G, Fitzpatrick D, Freund TF, González-Burgos G, Hestrin S, Hill S, Hof PR, Huang J, Jones EG, Kawaguchi Y, Kisvárday Z, Kubota Y, Lewis DA, Marín O, Markram H, McBain CJ, Meyer HS, Monyer H, Nelson SB, Rockland K, Rossier J, Rubenstein JLR, Rudy B, Scanziani M, Shepherd GM, Sherwood CC, Staiger JF, Tamás G, Thomson A, Wang Y, Yuste R, Ascoli GA. New insights into the classification and nomenclature of cortical GABAergic interneurons. Nat Rev Neurosci 2013; 14:202-16. [PMID: 23385869 PMCID: PMC3619199 DOI: 10.1038/nrn3444] [Citation(s) in RCA: 553] [Impact Index Per Article: 50.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
A systematic classification and accepted nomenclature of neuron types is much needed but is currently lacking. This article describes a possible taxonomical solution for classifying GABAergic interneurons of the cerebral cortex based on a novel, web-based interactive system that allows experts to classify neurons with pre-determined criteria. Using Bayesian analysis and clustering algorithms on the resulting data, we investigated the suitability of several anatomical terms and neuron names for cortical GABAergic interneurons. Moreover, we show that supervised classification models could automatically categorize interneurons in agreement with experts' assignments. These results demonstrate a practical and objective approach to the naming, characterization and classification of neurons based on community consensus.
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Affiliation(s)
- Javier DeFelipe
- Laboratorio Cajal de Circuitos Corticales, Centro de Tecnología Biomédica, Universidad Politécnica de Madrid, Campus Montegancedo S/N, Pozuelo de Alarcón, 28223 Madrid, Spain.
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Sillitoe RV, Malz CR, Rockland K, Hawkes R. Antigenic compartmentation of the primate and tree shrew cerebellum: a common topography of zebrin II in Macaca mulatta and Tupaia belangeri. J Anat 2004; 204:257-69. [PMID: 15061752 PMCID: PMC1571299 DOI: 10.1111/j.0021-8782.2004.00282.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
Despite the apparent uniformity in cellular composition of the adult cerebellar cortex, functional, anatomical, mutational and molecular maps all reveal a complex topography underlying the relatively simple architecture. In particular, zebrin II, a polypeptide antigen identified as aldolase C, is restricted to a subset of Purkinje cells that form a symmetrical and reproducible array of zones and stripes. The vermis of the well-studied rodent cerebellar cortex is divided into four transverse zones--anterior ( approximately lobules I-V), central ( approximately lobules VI and VII), posterior ( approximately lobule VIII) and nodular ( approximately lobules IX and X). Each transverse zone is further subdivided mediolaterally into parasagittal stripes. To gain insight into the evolution of cerebellar compartmentation, the pattern of zebrin II expression has been compared between the primate Macaca mulatta and the tree shrew Tupaia belangeri, and the results related to previous findings from other species. Although the somata of most Purkinje cells in the Macaca cerebellum express zebrin II, parasagittal stripes can still be delineated owing to the alternating high and low zebrin II immunoreactivity in the dendrites. In the macaque vermis, a complex set of zebrin II parasagittal compartments is found in all transverse zones. Unlike in rodents, in which uniform expression domains interrupt heterogeneous zones, zebrin II parasagittal stripes in the macaque cerebellum are seen throughout the vermis. In Tupaia, the parasagittal pattern of zebrin II expression also reveals a striking array of stripes in all lobules. The data suggest that cerebellar compartmentation in Tupaia belangeri more closely resembles that of primates than it does rodents or lagomorphs.
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Affiliation(s)
- Roy V Sillitoe
- Department of Cell Biology & Anatomy, and Genes and Development Research Group, Faculty of Medicine, The University of Calgary, Alberta, Canada
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