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Weng LC, Khurshid S, Hall AW, Nauffal V, Morrill VN, Sun YV, Rämö JT, Beer D, Lee S, Nadkarni G, Johnson R, Andreasen L, Clayton A, Pullinger CR, Yoneda ZT, Friedman DJ, Hyman MC, Judy RL, Skanes AC, Orland KM, Jordà P, Treu TM, Oetjens MT, Subbiah R, Hartmann JP, May HT, Kane JP, Issa TZ, Nafissi NA, Leong-Sit P, Dubé MP, Roselli C, Choi SH, Tardif JC, Khan HR, Knight S, Svendsen JH, Walker B, Linnér RK, Gaziano JM, Tadros R, Fatkin D, Rader DJ, Shah SH, Roden DM, Marcus GM, Loos RJ, Damrauer SM, Haggerty CM, Cho K, Palotie A, Olesen MS, Eckhardt LL, Roberts JD, Cutler MJ, Shoemaker MB, Wilson PW, Ellinor PT, Lubitz SA. Meta-Analysis of Genome-Wide Association Studies Reveals Genetic Mechanisms of Supraventricular Arrhythmias. CIRCULATION. GENOMIC AND PRECISION MEDICINE 2024; 17:e004320. [PMID: 38804128 PMCID: PMC11187659 DOI: 10.1161/circgen.123.004320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 03/31/2024] [Indexed: 05/29/2024]
Abstract
BACKGROUND Substantial data support a heritable basis for supraventricular tachycardias, but the genetic determinants and molecular mechanisms of these arrhythmias are poorly understood. We sought to identify genetic loci associated with atrioventricular nodal reentrant tachycardia (AVNRT) and atrioventricular accessory pathways or atrioventricular reciprocating tachycardia (AVAPs/AVRT). METHODS We performed multiancestry meta-analyses of genome-wide association studies to identify genetic loci for AVNRT (4 studies) and AVAP/AVRT (7 studies). We assessed evidence supporting the potential causal effects of candidate genes by analyzing relations between associated variants and cardiac gene expression, performing transcriptome-wide analyses, and examining prior genome-wide association studies. RESULTS Analyses comprised 2384 AVNRT cases and 106 489 referents, and 2811 AVAP/AVRT cases and 1,483 093 referents. We identified 2 significant loci for AVNRT, which implicate NKX2-5 and TTN as disease susceptibility genes. A transcriptome-wide association analysis supported an association between reduced predicted cardiac expression of NKX2-5 and AVNRT. We identified 3 significant loci for AVAP/AVRT, which implicate SCN5A, SCN10A, and TTN/CCDC141. Variant associations at several loci have been previously reported for cardiac phenotypes, including atrial fibrillation, stroke, Brugada syndrome, and electrocardiographic intervals. CONCLUSIONS Our findings highlight gene regions associated with ion channel function (AVAP/AVRT), as well as cardiac development and the sarcomere (AVAP/AVRT and AVNRT) as important potential effectors of supraventricular tachycardia susceptibility.
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Affiliation(s)
- Lu-Chen Weng
- Cardiovascular Rsrch Ctr, Dept of Medicine, Dept of Neurology & Dept of Psychiatry, MGH, Boston
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
- VA Boston Healthcare System
| | - Shaan Khurshid
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
- Demoulas Ctr for Cardiac Arrhythmias, Dept of Medicine, Dept of Neurology & Dept of Psychiatry, MGH, Boston
| | - Amelia Weber Hall
- Gene Regulation Observatory, The Broad Institute of MIT & Harvard, Cambridge
| | - Victor Nauffal
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
- VA Boston Healthcare System
- Cardiovascular Medicine Division, Brigham and Women’s Hospital, Boston, MA
| | - Valerie N. Morrill
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
| | - Yan V. Sun
- Dept of Epidemiology, Emory Univ Rollins School of Public Health, Atlanta
- VA Atlanta Healthcare System, Decatur, GA
| | - Joel T. Rämö
- Inst for Molecular Medicine Finland (FIMM), Helsinki Inst of Life Science (HiLIFE), Univ of Helsinki, Helsinki, Finland
- The Broad Inst of MIT & Harvard, Cambridge, MA
| | | | - Simon Lee
- Icahn School of Medicine at Mount Sinai, New York, NY
| | | | - Renee Johnson
- Victor Chang Cardiac Rsrch Inst, Darlinghurst
- School of Clinical Medicine, Faculty of Medicine & Health, UNSW Sydney, Kensington, NSW, Australia
| | - Laura Andreasen
- Laboratory for Molecular Cardiology, Dept of Cardiology, Copenhagen Univ Hospital, Rigshospitalet
- Dept of Biomedical Sciences, Univ of Copenhagen, Copenhagen, Denmark
| | - Anne Clayton
- Intermountain Heart Inst, Intermountain Medical Ctr, Murray, UT
| | - Clive R. Pullinger
- Cardiovascular Rsrch Inst & Dept of Physiological Nursing, Univ of California, San Francisco, CA
| | - Zachary T. Yoneda
- Dept of Medicine, Division of Cardiovascular Medicine, Vanderbilt Univ Medical Ctr, Nashville, TN
| | - Daniel J. Friedman
- Division of Cardiology, Dept of Medicine, Duke Univ School of Medicine, Durham, NC
| | - Matthew C. Hyman
- Division of Cardiac Electrophysiology, Hospital of the Univ of Pennsylvania
| | - Renae L. Judy
- Dept of Surgery, Perelman School of Medicine, Univ of Pennsylvania, Philadelphia, PA
| | - Allan C. Skanes
- Section of Cardiac Electrophysiology, Division of Cardiology, Dept of Medicine, Western Univ, London, ON, Canada
| | - Kate M. Orland
- Dept of Medicine, Division of Cardiovascular Medicine, Univ of Wisconsin–Madison, Madison, WI
| | - Paloma Jordà
- Montreal Heart Inst Rsrch Ctr & Faculty of Medicine, Université de Montréal, Montreal, QC, Canada
| | | | | | - Rajesh Subbiah
- Victor Chang Cardiac Rsrch Inst, Darlinghurst
- School of Clinical Medicine, Faculty of Medicine & Health, UNSW Sydney, Kensington, NSW, Australia
- St Vincent’s Hospital, Darlinghurst
| | - Jacob P. Hartmann
- Laboratory for Molecular Cardiology, Dept of Cardiology, Copenhagen Univ Hospital, Rigshospitalet
| | - Heidi T. May
- Intermountain Heart Inst, Intermountain Medical Ctr, Murray, UT
| | - John P. Kane
- Cardiovascular Rsrch Inst, Univ of California, San Francisco, CA
- Dept of Medicine, Univ of California, San Francisco, CA
- Dept of Biochemistry & Biophysics, Univ of California, San Francisco, CA
| | - Tariq Z. Issa
- Feinberg School of Medicine, Northwestern Univ, Chicago, IL
| | - Navid A. Nafissi
- Division of Cardiology, Dept of Medicine, Duke Univ School of Medicine, Durham, NC
| | - Peter Leong-Sit
- Section of Cardiac Electrophysiology, Division of Cardiology, Dept of Medicine, Western Univ, London, ON, Canada
| | - Marie-Pierre Dubé
- Montreal Heart Inst Rsrch Ctr & Faculty of Medicine, Université de Montréal, Montreal, QC, Canada
- Beaulieu-Saucier Pharmacogenomics Ctr, Montreal, Canada
| | - Carolina Roselli
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
- Dept of Cardiology, Univ of Groningen, University Medical Ctr Groningen, the Netherlands
| | - Seung Hoan Choi
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
| | | | | | | | - Jean-Claude Tardif
- Montreal Heart Inst Rsrch Ctr & Faculty of Medicine, Université de Montréal, Montreal, QC, Canada
| | - Habib R. Khan
- Section of Cardiac Electrophysiology, Division of Cardiology, Dept of Medicine, Western Univ, London, ON, Canada
| | - Stacey Knight
- Intermountain Heart Inst, Intermountain Medical Ctr, Murray, UT
- Dept of Medicine, Univ of Utah, Salt Lake City, UT
| | - Jesper H. Svendsen
- Laboratory for Molecular Cardiology, Dept of Cardiology, Copenhagen Univ Hospital, Rigshospitalet
- Dept of Clinical Medicine, Univ of Copenhagen, Copenhagen, Denmark
| | - Bruce Walker
- School of Clinical Medicine, Faculty of Medicine & Health, UNSW Sydney, Kensington, NSW, Australia
- St Vincent’s Hospital, Darlinghurst
| | - Richard Karlsson Linnér
- Autism & Developmental Medicine Inst, Geisinger, Lewisburg, PA
- Dept of Economics, Leiden Law School, Leiden Univ, Leiden, the Netherlands
| | - J. Michael Gaziano
- VA Boston Healthcare System
- Cardiovascular Medicine Division, Brigham and Women’s Hospital, Boston, MA
- Harvard Medical School, Boston, MA
| | - Rafik Tadros
- Montreal Heart Inst Rsrch Ctr & Faculty of Medicine, Université de Montréal, Montreal, QC, Canada
| | - Diane Fatkin
- Victor Chang Cardiac Rsrch Inst, Darlinghurst
- School of Clinical Medicine, Faculty of Medicine & Health, UNSW Sydney, Kensington, NSW, Australia
- St Vincent’s Hospital, Darlinghurst
| | - Daniel J. Rader
- Division of Cardiovascular Medicine, Dept of Medicine, Perelman School of Medicine, Univ of Pennsylvania, Philadelphia, PA
| | - Svati H. Shah
- Division of Cardiology, Dept of Medicine, Duke Univ School of Medicine, Durham, NC
- Duke Molecular Physiology Inst, Duke Univ School of Medicine, Durham, NC
| | | | | | - Ruth J.F. Loos
- Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY & Novo Nordisk Foundation Ctr for Basic Metabolic Rsrch, Dept of Health & Medical Sciences, Univ of Copenhagen, Copenhagen, Denmark
| | - Scott M. Damrauer
- Dept of Surgery & Dept of Genetics, Perelman School of Medicine, Univ of Pennsylvania, Philadelphia, PA
- Corporal Michael Crescenz VA Medical Ctr, Philadelphia
| | - Christopher M. Haggerty
- Heart Inst, Geisinger, Danville, PA
- Dept of Translational Data Science & Informatics, Geisinger, Danville, PA
| | - Kelly Cho
- VA Boston Healthcare System
- Cardiovascular Medicine Division, Brigham and Women’s Hospital, Boston, MA
| | - Aarno Palotie
- Inst for Molecular Medicine Finland (FIMM), Helsinki Inst of Life Science (HiLIFE), Univ of Helsinki, Helsinki, Finland
- The Stanley Center for Psychiatric Rsrch & Program in Medical & Population Genetics, The Broad Institute of MIT & Harvard, Cambridge
- Analytic & Translational Genetics Unit, Dept of Medicine, Dept of Neurology & Dept of Psychiatry, MGH, Boston
| | - Morten S. Olesen
- Laboratory for Molecular Cardiology, Dept of Cardiology, Copenhagen Univ Hospital, Rigshospitalet
- Dept of Biomedical Sciences, Univ of Copenhagen, Copenhagen, Denmark
| | - Lee L. Eckhardt
- Dept of Medicine, Division of Cardiovascular Medicine, Univ of Wisconsin–Madison, Madison, WI
| | - Jason D. Roberts
- Section of Cardiac Electrophysiology, Division of Cardiology, Dept of Medicine, Western Univ, London, ON, Canada
| | | | - M. Benjamin Shoemaker
- Dept of Medicine, Division of Cardiovascular Medicine, Vanderbilt Univ Medical Ctr, Nashville, TN
| | - Peter W.F. Wilson
- VA Atlanta Healthcare System, Decatur, GA
- Dept of Medicine, Emory Univ School of Medicine, Atlanta, GA
| | - Patrick T. Ellinor
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
- Demoulas Ctr for Cardiac Arrhythmias, Dept of Medicine, Dept of Neurology & Dept of Psychiatry, MGH, Boston
| | - Steven A. Lubitz
- Cardiovascular Disease Initiative, The Broad Institute of MIT & Harvard, Cambridge
- Demoulas Ctr for Cardiac Arrhythmias, Dept of Medicine, Dept of Neurology & Dept of Psychiatry, MGH, Boston
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