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Varney R. The Genomics in Emerging Marine Systems Checklist for Clear and Reproducible Genomics in Emerging, Marine Systems. Integr Comp Biol 2023; 63:1010-1016. [PMID: 37381586 DOI: 10.1093/icb/icad082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Revised: 05/24/2023] [Accepted: 06/11/2023] [Indexed: 06/30/2023] Open
Abstract
Genome sequencing becomes more accessible and powerful every year, but there is a lack of consensus on what information should be provided in publications that include genomic data. The result is a flood of sequencing data without a framework to evaluate its quality and completeness, hindering reproducibility. In non-model taxa in marine systems, a lack of detail in methods sections often hinders future researchers from adopting improved techniques, leaving them to repeat costly protocols and take up computational (wall) time with programs that are already known to fail. Here, I present a set of guidelines tailored for marine taxa (emerging model organisms) to promote consistency between publications, increase transparency of sequencing projects, and preserve the value of sequence data as sequencing technologies advance. Included is a checklist to (1) guide authors toward including more detailed information in their manuscripts, (2) expand data availability, and (3) assist reviewers to thoroughly vet methods and results of future 'omic publications. This set of guidelines will support the usefulness of 'omic data in future analyses by providing a framework to document and evaluate these data, leading to transparent and reproducible genomics research on emerging marine systems.
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2
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Genomics-informed models reveal extensive stretches of coastline under threat by an ecologically dominant invasive species. Proc Natl Acad Sci U S A 2021; 118:2022169118. [PMID: 34083434 DOI: 10.1073/pnas.2022169118] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Explaining why some species are widespread, while others are not, is fundamental to biogeography, ecology, and evolutionary biology. A unique way to study evolutionary and ecological mechanisms that either limit species' spread or facilitate range expansions is to conduct research on species that have restricted distributions. Nonindigenous species, particularly those that are highly invasive but have not yet spread beyond the introduced site, represent ideal systems to study range size changes. Here, we used species distribution modeling and genomic data to study the restricted range of a highly invasive Australian marine species, the ascidian Pyura praeputialis This species is an aggressive space occupier in its introduced range (Chile), where it has fundamentally altered the coastal community. We found high genomic diversity in Chile, indicating high adaptive potential. In addition, genomic data clearly showed that a single region from Australia was the only donor of genotypes to the introduced range. We identified over 3,500 km of suitable habitat adjacent to its current introduced range that has so far not been occupied, and importantly species distribution models were only accurate when genomic data were considered. Our results suggest that a slight change in currents, or a change in shipping routes, may lead to an expansion of the species' introduced range that will encompass a vast portion of the South American coast. Our study shows how the use of population genomics and species distribution modeling in combination can unravel mechanisms shaping range sizes and forecast future range shifts of invasive species.
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3
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Atalah J, Fletcher LM, Forrest BM. Impacts of a putative invasive ascidian on rocky shore communities. MARINE ENVIRONMENTAL RESEARCH 2021; 168:105308. [PMID: 33839402 DOI: 10.1016/j.marenvres.2021.105308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 02/25/2021] [Accepted: 03/11/2021] [Indexed: 06/12/2023]
Abstract
The number and distribution of non-indigenous species in coastal habitats is increasing. Our ability to prioritise the management of this threat is limited by our understanding of their impacts. We investigated the density dependent effects of the non-indigenous solitary ascidian Pyura doppelgangera on native mussels and rocky shore communities in northern New Zealand. Minimal recruitment of P. doppelgangera was recorded during a 1.5-year experiment. Mussels showed no sign of overgrowth or spatial competition with P. doppelgangera, and their physiological condition was not impacted. We found marginal effects of the ascidian on community development, associated with small increases in diversity. We concluded that P. doppelgangera is not an aggressive competitor nor a threat to native communities, as previously thought, and that it has a very limited natural recruitment and spread potential. Reports from local Māori and a literature review suggest that P. doppelgangera has been present in the area for longer than previously thought, raising questions about its 'introduction' status and its current designation as a pest.
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Affiliation(s)
- Javier Atalah
- Cawthron Institute, Private Bag 2, Nelson, 7010, New Zealand.
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4
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Hernández-Hernández T, Miller EC, Román-Palacios C, Wiens JJ. Speciation across the Tree of Life. Biol Rev Camb Philos Soc 2021; 96:1205-1242. [PMID: 33768723 DOI: 10.1111/brv.12698] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 02/13/2021] [Accepted: 02/16/2021] [Indexed: 01/04/2023]
Abstract
Much of what we know about speciation comes from detailed studies of well-known model systems. Although there have been several important syntheses on speciation, few (if any) have explicitly compared speciation among major groups across the Tree of Life. Here, we synthesize and compare what is known about key aspects of speciation across taxa, including bacteria, protists, fungi, plants, and major animal groups. We focus on three main questions. Is allopatric speciation predominant across groups? How common is ecological divergence of sister species (a requirement for ecological speciation), and on what niche axes do species diverge in each group? What are the reproductive isolating barriers in each group? Our review suggests the following patterns. (i) Based on our survey and projected species numbers, the most frequent speciation process across the Tree of Life may be co-speciation between endosymbiotic bacteria and their insect hosts. (ii) Allopatric speciation appears to be present in all major groups, and may be the most common mode in both animals and plants, based on non-overlapping ranges of sister species. (iii) Full sympatry of sister species is also widespread, and may be more common in fungi than allopatry. (iv) Full sympatry of sister species is more common in some marine animals than in terrestrial and freshwater ones. (v) Ecological divergence of sister species is widespread in all groups, including ~70% of surveyed species pairs of plants and insects. (vi) Major axes of ecological divergence involve species interactions (e.g. host-switching) and habitat divergence. (vii) Prezygotic isolation appears to be generally more widespread and important than postzygotic isolation. (viii) Rates of diversification (and presumably speciation) are strikingly different across groups, with the fastest rates in plants, and successively slower rates in animals, fungi, and protists, with the slowest rates in prokaryotes. Overall, our study represents an initial step towards understanding general patterns in speciation across all organisms.
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Affiliation(s)
- Tania Hernández-Hernández
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A.,Catedrática CONACYT asignada a LANGEBIO-UGA Cinvestav, Libramiento Norte Carretera León Km 9.6, 36821, Irapuato, Guanajuato, Mexico
| | - Elizabeth C Miller
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| | - Cristian Román-Palacios
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
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5
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Corrêa de Barros R, Moreira da Rocha R. Genetic analyses reveal cryptic diversity in the widely distributed Styela canopus (Ascidiacea:Styelidae). INVERTEBR SYST 2021. [DOI: 10.1071/is20058] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The routine use of DNA sequencing techniques and phylogenetic analysis has resulted in the discovery of many cryptic species, especially in the oceans. The common, globally introduced species Styela canopus is suspected to be a complex of cryptic species because of its widespread distribution and variable external morphology. We tested this possibility using COI and ANT marker sequences to uncover the phylogenetic relationship among 19 populations, and to examine genetic variability as well as gene flow. We obtained 271 COI and 67 ANT sequences and found surprising diversity among the 19 populations (COI: π = 0.18, hd = 0.99; ANT: π = 0.13, hd = 0.95). Corresponding topologies were found using Bayesian inference and maximum likelihood for both simple locus (COI) and multilocus (COI + ANT) analyses and so the clades received strong support. We used simple (ABGD, bPTP, GMYC) and multiple (BSD) locus methods to delimit species. The simple locus methods indicated that the current Styela canopus comprises at least 15 species. The BSD method for concatenated data supported 7 of the 15 species. We suggest that S. canopus should be treated as the Styela canopus complex. The large number of cryptic species found, often with more than one clade found in sympatry, creates opportunities for better understanding reproductive isolation, hybridisation or speciation. As several lineages have already been introduced widely around the world, we must quickly understand their diversity and invasive abilities.
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6
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Zhang Z, Capinha C, Karger DN, Turon X, MacIsaac HJ, Zhan A. Impacts of climate change on geographical distributions of invasive ascidians. MARINE ENVIRONMENTAL RESEARCH 2020; 159:104993. [PMID: 32662432 DOI: 10.1016/j.marenvres.2020.104993] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 04/14/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
Ocean warming associated with global climate change renders marine ecosystems susceptible to biological invasions. Here, we used species distribution models to project habitat suitability for eight invasive ascidians under present-day and future climate scenarios. Distance to shore and maximum sea surface temperature were identified as the most important variables affecting species distributions. Results showed that eight ascidians might respond differently to future climate change. Alarmingly, currently colonized areas are much smaller than predicted, suggesting ascidians may expand their invasive ranges. Areas such as Americas, Europe and Western Pacific have high risks of receiving new invasions. In contrast, African coasts, excluding the Mediterranean side, are not prone to new invasions, likely due to the high sea surface temperature there. Our results highlight the importance of climate change impacts on future invasions and the need for accurate modelling of invasion risks, which can be used as guides to develop management strategies.
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Affiliation(s)
- Zhixin Zhang
- Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology, Konan, Minato, Tokyo, 108-8477, Japan
| | - César Capinha
- Centro de Estudos Geográficos, Instituto de Geografia e Ordenamento do Território - IGOT, Universidade de Lisboa, Rua Branca Edmée Marques, 1600-276, Lisboa, Portugal
| | - Dirk N Karger
- Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Xavier Turon
- Centre for Advanced Studies of Blanes (CEAB, CSIC), Blanes, Catalonia, Spain
| | - Hugh J MacIsaac
- School of Ecology and Environmental Science, Yunnan University, Kunming, China; Great Lakes Institute for Environmental Research, University of Windsor, Windsor, Ontario, Canada
| | - Aibin Zhan
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing, China.
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7
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Hudson J, McQuaid CD, Rius M. Contemporary climate change hinders hybrid performance of ecologically dominant marine invertebrates. J Evol Biol 2020; 34:60-72. [PMID: 32096898 DOI: 10.1111/jeb.13609] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 02/03/2020] [Accepted: 02/15/2020] [Indexed: 12/28/2022]
Abstract
Human activities alter patterns of biodiversity, particularly through species extinctions and range shifts. Two of these activities are human mediated transfer of species and contemporary climate change, and both allow previously isolated genotypes to come into contact and hybridize, potentially altering speciation rates. Hybrids have been shown to survive environmental conditions not tolerated by either parent, suggesting that, under some circumstances, hybrids may be able to expand their ranges and perform well under rapidly changing conditions. However, studies assessing how hybridization influences contemporary range shifts are scarce. We performed crosses on Pyura herdmani and Pyura stolonifera (Chordata, Tunicata), two closely related marine invertebrate species that are ecologically dominant and can hybridize. These sister species live in sympatry along the coasts of southern Africa, but one has a disjunct distribution that includes northern hemisphere sites. We experimentally assessed the performance of hybrid and parental crosses using different temperature regimes, including temperatures predicted under future climate change scenarios. We found that hybrids showed lower performance than parental crosses at the experimental temperatures, suggesting that hybrids are unlikely to expand their ranges to new environments. In turn, we found that the more widespread species performed better at a wide array of temperatures, indicating that this parental species may cope better with future conditions. This study illustrates how offspring fitness may provide key insights to predict range expansions and how contemporary climate change may mediate both the ability of hybrids to expand their ranges and the occurrence of speciation as a result of hybridization.
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Affiliation(s)
- Jamie Hudson
- School of Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, UK
| | | | - Marc Rius
- School of Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, UK.,Department of Zoology, Centre for Ecological Genomics and Wildlife Conservation, University of Johannesburg, Auckland Park, South Africa
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8
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Ntuli NN, Nicastro KR, Zardi GI, Assis J, McQuaid CD, Teske PR. Rejection of the genetic implications of the "Abundant Centre Hypothesis" in marine mussels. Sci Rep 2020; 10:604. [PMID: 31953497 PMCID: PMC6969206 DOI: 10.1038/s41598-020-57474-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2019] [Accepted: 12/26/2019] [Indexed: 11/09/2022] Open
Abstract
The ‘Abundant-Centre Hypothesis’ is a well-established but controversial hypothesis stating that the abundance of a species is highest at the centre of its range and decreases towards the edges, where conditions are unfavourable. As genetic diversity depends on population size, edge populations are expected to show lower intra-population genetic diversity than core populations, while showing high inter-population genetic divergence. Here, the genetic implications of the Abundant-Centre Hypothesis were tested on two coastal mussels from South Africa that disperse by means of planktonic larvae, the native Perna perna and the invasive Mytilus galloprovincialis. Genetic structure was found within P. perna, which, together with evidence from Lagrangian particle simulations, points to significant reductions in gene flow between sites. Despite this, the expected diversity pattern between centre and edge populations was not found for either species. We conclude that the genetic predictions of the Abundant-Centre Hypothesis are unlikely to be met by high-dispersal species with large population sizes, and may only become evident in species with much lower levels of connectivity.
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Affiliation(s)
- Noxolo N Ntuli
- Centre for Ecological Genomics and Wildlife Conservation, Department of Zoology, University of Johannesburg, Auckland Park, 2006, South Africa
| | - Katy R Nicastro
- CCMAR - Centro de Ciências do Mar, Universidade do Algarve, Faro, Portugal.,Department of Zoology and Entomology, Rhodes University, Grahamstown, 6140, South Africa
| | - Gerardo I Zardi
- Department of Zoology and Entomology, Rhodes University, Grahamstown, 6140, South Africa
| | - Jorge Assis
- CCMAR - Centro de Ciências do Mar, Universidade do Algarve, Faro, Portugal
| | - Christopher D McQuaid
- Department of Zoology and Entomology, Rhodes University, Grahamstown, 6140, South Africa
| | - Peter R Teske
- Centre for Ecological Genomics and Wildlife Conservation, Department of Zoology, University of Johannesburg, Auckland Park, 2006, South Africa.
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9
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Boo GH, Qiu YX, Kim JY, Ang PO, Bosch S, De Clerck O, He P, Higa A, Huang B, Kogame K, Liu SL, van Nguyen T, Suda S, Terada R, Miller KA, Boo SM. Contrasting patterns of genetic structure and phylogeography in the marine agarophytes Gelidiophycus divaricatus and G. freshwateri (Gelidiales, Rhodophyta) from East Asia. JOURNAL OF PHYCOLOGY 2019; 55:1319-1334. [PMID: 31390066 DOI: 10.1111/jpy.12910] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Accepted: 07/19/2019] [Indexed: 06/10/2023]
Abstract
The evolutionary and population demographic history of marine red algae in East Asia is poorly understood. Here, we reconstructed the phylogeographies of two upper intertidal species endemic to East Asia, Gelidiophycus divaricatus and G. freshwateri. Phylogenetic and phylogeographic inferences of 393 mitochondrial cox1, 128 plastid rbcL, and 342 nuclear ITS2 sequences were complemented with ecological niche models. Gelidiophycus divaricatus, a southern species adapted to warm water, is characterized by a high genetic diversity and a strong geographical population structure, characteristic of stable population sizes and sudden reduction to recent expansion. In contrast, G. freshwateri, a northern species adapted to cold temperate conditions, is genetically relatively homogeneous with a shallow population structure resulting from steady population growth and recent equilibrium. The overlap zone of the two species roughly matches summer and winter isotherms, indicating that surface seawater temperature is a key feature influencing species range. Unidirectional genetic introgression was detected at two sites on Jeju Island where G. divaricatus was rare while G. freshwateri was common, suggesting the occurrence of asymmetric natural hybrids, a rarely reported event for rhodophytes. Our results illustrate that Quaternary climate oscillations have left strong imprints on the current day genetic structure and highlight the importance of seawater temperature and sea level change in driving speciation in upper intertidal seaweed species.
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Affiliation(s)
- Ga Hun Boo
- University Herbarium, University of California, 1001 Valley Life Sciences Building #2465, Berkeley, California, 94720, USA
- Department of Biology, Chungnam National University, Daejeon, 34134, Korea
| | - Ying-Xiong Qiu
- Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, and College of Life Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Jung Yeon Kim
- Department of Biology, Chungnam National University, Daejeon, 34134, Korea
| | - Put O Ang
- Marine Science Laboratory, The Chinese University of Hong Kong, Shatin N.T, Hong Kong SAR, China
| | - Samuel Bosch
- Phycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Krijgslaan 281 (S8), 9000, Gent, Belgium
| | - Olivier De Clerck
- Phycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Krijgslaan 281 (S8), 9000, Gent, Belgium
| | - Peimin He
- College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China
| | - Atsushi Higa
- Okinawa Environmental Analysis Center Co. Ltd, 3-7-24 Maehara, Ginowan, Okinawa, 901-2215, Japan
| | - Bangqin Huang
- Key Laboratory of Coastal Ecology and Environmental Studies, Xiamen University, Fujian, China
| | - Kazuhiro Kogame
- Department of Natural History Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Shao-Lun Liu
- Department of Life Science, Tunghai University, Taichung, 40704, Taiwan
| | - Tu van Nguyen
- Department of Ecology, Institute of Tropical Biology, Vietnam Academy of Science and Technology, 85 Tran Quoc Toan, District 3, Ho Chi Minh City, Vietnam
| | - Shoichiro Suda
- Department of Chemistry, Biology & Marine Science, Faculty of Science, University of the Ryukyus, Okinawa, 903-0213, Japan
| | - Ryuta Terada
- United Graduate School of Agricultural Sciences, Kagoshima University, Korimoto 1-21-24, Kagoshima, 890-0065, Japan
| | - Kathy Ann Miller
- University Herbarium, University of California, 1001 Valley Life Sciences Building #2465, Berkeley, California, 94720, USA
| | - Sung Min Boo
- Department of Biology, Chungnam National University, Daejeon, 34134, Korea
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10
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Davis AR, Becerro M, Turon X. Living on the edge: Early life history phases as determinants of distribution in Pyura praeputialis (Heller, 1878), a rocky shore ecosystem engineer. MARINE ENVIRONMENTAL RESEARCH 2018; 142:40-47. [PMID: 30269896 DOI: 10.1016/j.marenvres.2018.09.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Revised: 09/17/2018] [Accepted: 09/18/2018] [Indexed: 06/08/2023]
Abstract
The distribution of intertidal organisms can depend on processes operating early in their life history. The ascidian Pyura praeputialis, a mid- to low-intertidal habitat-forming ecosystem engineer, was strongly associated with specific types of habitat (biogenic vs. bare rock). We examined field patterns and performed laboratory and field experiments to assess the nature of this association. Recruits were frequently found on the tunics of conspecifics and clumps of turfing coralline algae. Larvae preferred these same habitats in a series of laboratory settlement assays. Laboratory-reared juveniles (20- & 50-days-old) survived poorly on bare rock in the laboratory, while those on rugose surfaces - the tunic of adults and turfing corallines - showed high survivorship. Field-collected juveniles (<2 cm) affixed to these rugose habitats also exhibited high survivorship in the field. We conclude that both pre and post-settlement processes determine spatial pattern in this important habitat-forming taxon. The acute sensitivity of juveniles to desiccating conditions was unexpected in an intertidal organism.
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Affiliation(s)
- Andrew R Davis
- Centre for Sustainable Ecosystem Solutions, School of Biological Sciences, University of Wollongong, NSW, 2522, Australia.
| | - Mikel Becerro
- Centre for Advanced Studies of Blanes (CEAB, CSIC), Blanes, Girona, Spain.
| | - Xavier Turon
- Centre for Advanced Studies of Blanes (CEAB, CSIC), Blanes, Girona, Spain.
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11
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Darling JA, Carlton JT. A Framework for Understanding Marine Cosmopolitanism in the Anthropocene. FRONTIERS IN MARINE SCIENCE 2018; 5:293. [PMID: 31019910 PMCID: PMC6475922 DOI: 10.3389/fmars.2018.00293] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Recent years have witnessed growing appreciation for the ways in which human-mediated species introductions have reshaped marine biogeography. Despite this we have yet to grapple fully with the scale and impact of anthropogenic dispersal in both creating and determining contemporary distributions of marine taxa. In particular, the past several decades of research on marine biological invasions have revealed that broad geographic distributions of coastal marine organisms-historically referred to simply as "cosmopolitanism"-may belie complex interplay of both natural and anthropogenic processes. Here we describe a framework for understanding contemporary cosmopolitanism, informed by a synthesis of the marine bioinvasion literature. Our framework defines several novel categories in an attempt to provide a unified terminology for discussing cosmopolitan distributions in the world's oceans. We reserve the term eucosmopolitan to refer to those species for which data exist to support a true, natural, and prehistorically global (or extremely broad) distribution. While in the past this has been the default assumption for species observed to exhibit contemporary cosmopolitan distributions, we argue that given recent advances in marine invasion science this assignment should require positive evidence. In contrast, neocosmopolitan describes those species that have demonstrably achieved extensive geographic ranges only through historical anthropogenic dispersal, often facilitated over centuries of human maritime traffic. We discuss the history and human geography underpinning these neocosmopolitan distributions, and illustrate the extent to which these factors may have altered natural biogeographic patterns. We define the category pseudocosmopolitan to encompass taxa for which a broad distribution is determined (typically after molecular investigation) to reflect multiple, sometimes regionally endemic, lineages with uncertain taxonomic status; such species may remain cosmopolitan only so long as taxonomic uncertainty persists, after which they may splinter into multiple geographically restricted species. We discuss the methods employed to identify such species and to resolve both their taxonomic status and their biogeographic histories. We argue that recognizing these different types of cosmopolitanism, and the important role that invasion science has played in understanding them, is critically important for the future study of both historical and modern marine biogeography, ecology, and biodiversity.
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Affiliation(s)
- John A. Darling
- United States Environmental Protection Agency, National Exposure Research Laboratory, Research Triangle Park, NC, United States
| | - James T. Carlton
- Maritime Studies Program, Williams College-Mystic Seaport, Mystic, CT, United States
- Department of Biology, Williams College, Williamstown, MA, United States
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12
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Nydam ML, Stephenson EE, Waldman CE, De Tomaso AW. Balancing selection on allorecognition genes in the colonial ascidian Botryllus schlosseri. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2017; 69:60-74. [PMID: 28024871 DOI: 10.1016/j.dci.2016.12.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2016] [Revised: 12/22/2016] [Accepted: 12/22/2016] [Indexed: 06/06/2023]
Abstract
Allorecognition is the capability of an organism to recognize its own or related tissues. The colonial ascidian Botryllus schlosseri, which comprises five genetically distinct and divergent species (Clades A-E), contains two adjacent genes that control allorecognition: fuhcsec and fuhctm. These genes have been characterized extensively in Clade A and are highly polymorphic. Using alleles from 10 populations across the range of Clade A, we investigated the type and strength of selection maintaining this variation. Both fuhc genes exhibit higher within-population variation and lower population differentiation measures (FST) than neutral loci. The fuhc genes contain a substantial number of codons with >95% posterior probability of dN/dS > 1. fuhcsec and fuhctm also have polymorphisms shared between Clade A and Clade E that were present prior to speciation (trans-species polymorphisms). These results provide robust evidence that the fuhc genes are evolving under balancing selection.
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Affiliation(s)
- Marie L Nydam
- Division of Science and Mathematics, Centre College, 600 W. Walnut Street, Danville, KY 40422, United States.
| | - Emily E Stephenson
- Division of Science and Mathematics, Centre College, 600 W. Walnut Street, Danville, KY 40422, United States; Centre for Infectious Disease Research, P.O. Box 34681, Lusaka, 10101, Zambia.
| | - Claire E Waldman
- Division of Science and Mathematics, Centre College, 600 W. Walnut Street, Danville, KY 40422, United States.
| | - Anthony W De Tomaso
- Department of Molecular, Cellular, and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA 93106, United States.
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13
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Hurtado LA, Mateos M, Liu S. Phylogeographic patterns of a lower intertidal isopod in the Gulf of California and the Caribbean and comparison with other intertidal isopods. Ecol Evol 2017; 7:346-357. [PMID: 28070297 PMCID: PMC5214745 DOI: 10.1002/ece3.2599] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Revised: 10/12/2016] [Accepted: 10/19/2016] [Indexed: 11/25/2022] Open
Abstract
A growing body of knowledge on the diversity and evolution of intertidal isopods across different regions worldwide has enhanced our understanding on biological diversification at the poorly studied, yet vast, sea-land interface. High genetic divergences among numerous allopatric lineages have been identified within presumed single broadly distributed species. Excirolana mayana is an intertidal isopod that is commonly found in sandy beaches throughout the Gulf of California. Its distribution in the Pacific extends from this basin to Colombia and in the Atlantic from Florida to Venezuela. Despite its broad distribution and ecological importance, its evolutionary history has been largely neglected. Herein, we examined phylogeographic patterns of E. mayana in the Gulf of California and the Caribbean, based on maximum-likelihood and Bayesian phylogenetic analyses of DNA sequences from four mitochondrial genes (16S rDNA, 12S rDNA, cytochrome oxidase I gene, and cytochrome b gene). We compared the phylogeographic patterns of E. mayana with those of the coastal isopods Ligia and Excirolana braziliensis (Gulf of California and Caribbean) and Tylos (Gulf of California). We found highly divergent lineages in both, the Gulf of California and Caribbean, suggesting the presence of multiple species. We identified two instances of Atlantic-Pacific divergences. Some geographical structuring among the major clades found in the Caribbean is observed. Haplotypes from the Gulf of California form a monophyletic group sister to a lineage found in Venezuela. Phylogeographic patterns of E. mayana in the Gulf of California differ from those observed in Ligia and Tylos in this region. Nonetheless, several clades of E. mayana have similar distributions to clades of these two other isopod taxa. The high levels of cryptic diversity detected in E. mayana also pose challenges for the conservation of this isopod and its fragile environment, the sandy shores.
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Affiliation(s)
- Luis A. Hurtado
- Department of Wildlife and Fisheries SciencesTexas A&M UniversityCollege StationTXUSA
| | - Mariana Mateos
- Department of Wildlife and Fisheries SciencesTexas A&M UniversityCollege StationTXUSA
| | - Shuang Liu
- Department of Wildlife and Fisheries SciencesTexas A&M UniversityCollege StationTXUSA
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14
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Sheets EA, Cohen CS, Ruiz GM, da Rocha RM. Investigating the widespread introduction of a tropical marine fouling species. Ecol Evol 2016; 6:2453-71. [PMID: 27066231 PMCID: PMC4788974 DOI: 10.1002/ece3.2065] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2015] [Revised: 01/30/2016] [Accepted: 02/09/2016] [Indexed: 11/17/2022] Open
Abstract
Little is known about the number and rate of introductions into terrestrial and marine tropical regions, and if introduction patterns and processes differ from temperate latitudes. Botryllid ascidians (marine invertebrate chordates) are an interesting group to study such introduction differences because several congeners have established populations across latitudes. While temperate botryllid invasions have been repeatedly highlighted, the global spread of tropical Botrylloides nigrum (Herdman, 1886) has been largely ignored. We sampled B. nigrum from 16 worldwide warm water locations, including around the Panama Canal, one of the largest shipping hubs in the world and a possible introduction corridor. Using mitochondrial (COI) and nuclear (ANT) markers, we discovered a single species with low genetic divergence and diversity that has established in the Atlantic, Pacific, Indo‐Pacific, and Mediterranean Oceans. The Atlantic Ocean contained the highest diversity and multilocus theta estimates and may be a source for introductions to other regions. A high frequency of one mitochondrial haplotype was detected in Pacific populations that may represent a recent introduction in this region. In comparison to temperate relatives, B. nigrum displayed lower (but similar to temperate Botrylloides violaceus) genetic divergence and diversity at both loci that may represent a more recent global spread or differences in introduction pressures in tropical regions. Additionally, chimeras (genetically distinct individuals sharing a single body) were detected in three populations by the mitochondrial locus and validated using cloning, and these individuals contained new haplotype diversity not detected in any other colonies.
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Affiliation(s)
- Elizabeth A Sheets
- Romberg Tiburon Center for Environmental Studies Biology Department San Francisco State University 3150 Paradise Drive Tiburon California 94920
| | - C Sarah Cohen
- Romberg Tiburon Center for Environmental Studies Biology Department San Francisco State University 3150 Paradise Drive Tiburon California 94920
| | - Gregory M Ruiz
- Smithsonian Environmental Research Center 627 Contees Wharf Rd. Edgewater Maryland 21037
| | - Rosana M da Rocha
- Departamento de Zoologia Universidade Federal do Paraná CP 19020 81531-980 Curitiba Brazil
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15
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Sun Y, Wong E, Tovar-Hernández MA, Williamson JE, Kupriyanova EK. Is Hydroides brachyacantha (Serpulidae : Annelida) a widespread species? INVERTEBR SYST 2016. [DOI: 10.1071/is15015] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Hydroides brachyacantha Rioja, 1941, an important fouling serpulid species originally described from Mazatlán (Southern Gulf of California, Mexico) and Acapulco (southern Mexican Pacific), has been reported from the Mexican Pacific and numerous tropical and subtropical localities. However, a recent description of H. amri Sun, Wong, ten Hove, Hutchings, Williamson & Kupriyanova, 2015 from Australia, which was historically misidentified as H. brachyacantha, suggested that the widespread ‘H. brachyacantha’ is indeed a species complex. To test the status of H. amri, we conducted phylogenetic analyses based on a combined dataset of 18S rRNA, internal transcribed spacer-2, and cytochrome b sequences of H. brachyacantha from the type locality in Mexico with those of H. amri from Australia. Our molecular data supported the morphology-based hypothesis of H. amri and H. brachyacantha sensu stricto as two distinct species. Furthermore, H. amri comprises two non-sister well-supported clades. Hydroides amri thus comprises what we consider two cryptic species with long-term isolation. Here we describe the genetic lineage in South Australia as Hydroides nikae, sp. nov. Given the absence of a holotype of H. brachyacantha, we designate a neotype collected from the type locality (Mazatlán, Mexico). This study calls for a worldwide revision of the H. brachyacantha-complex.
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16
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Bruce MR, Saunders GW. Population genetic analyses are consistent with the introduction of Ceramium secundatum (Ceramiaceae, Rhodophyta) to Narragansett Bay, Rhode Island, USA. Ecol Evol 2015; 5:5088-95. [PMID: 26640684 PMCID: PMC4662316 DOI: 10.1002/ece3.1754] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Revised: 08/24/2015] [Accepted: 08/26/2015] [Indexed: 11/11/2022] Open
Abstract
During ongoing DNA barcode (COI‐5P) surveys of the macroalgal flora along the northwest Atlantic coast, we discovered a population of Ceramium secundatum in Narragansett Bay, Rhode Island, USA. This species is regarded as common and widespread in the northeast Atlantic, ranging from Norway to Morocco, but until now has not been reported from the western Atlantic. Several lines of evidence suggest that C. secundatum may be introduced to Narragansett Bay: (1) despite extensive collecting, specimens have only been obtained from a limited geographic range in the northwest Atlantic; (2) three other nonindigenous seaweed species are reportedly introduced in this region, which is thought to be a consequence of shipping; and (3) this species is introduced to South Africa and New Zealand. To investigate this suspected introduction, we applied population genetic analyses (using the cox2‐3 spacer) to compare the Narragansett Bay C. secundatum population to native populations in the Republic of Ireland and the United Kingdom. Collectively, analyses of biogeographical and molecular data indicate that C. secundatum is likely introduced to Narragansett Bay. The implications of this discovery are discussed.
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Affiliation(s)
- Meghann R Bruce
- Department of Biology Centre for Environmental and Molecular Algal Research University of New Brunswick 10 Bailey Dr. Fredericton NB Canada E3B 5A3
| | - Gary W Saunders
- Department of Biology Centre for Environmental and Molecular Algal Research University of New Brunswick 10 Bailey Dr. Fredericton NB Canada E3B 5A3
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17
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Lee CE. Evolutionary mechanisms of habitat invasions, using the copepod Eurytemora affinis as a model system. Evol Appl 2015; 9:248-70. [PMID: 27087851 PMCID: PMC4780390 DOI: 10.1111/eva.12334] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2015] [Accepted: 09/19/2015] [Indexed: 01/06/2023] Open
Abstract
The study of the copepod Eurytemora affinis has provided unprecedented insights into mechanisms of invasive success. In this invited review, I summarize a subset of work from my laboratory to highlight key insights gained from studying E. affinis as a model system. Invasive species with brackish origins are overrepresented in freshwater habitats. The copepod E. affinis is an example of such a brackish invader, and has invaded freshwater habitats multiple times independently in recent years. These invasions were accompanied by the evolution of physiological tolerance and plasticity, increased body fluid regulation, and evolutionary shifts in ion transporter (V‐type H+ATPase, Na+, K+‐ATPase) activity and expression. These evolutionary changes occurred in parallel across independent invasions in nature and in laboratory selection experiments. Selection appears to act on standing genetic variation during invasions, and maintenance of this variation is likely facilitated through ‘beneficial reversal of dominance’ in salinity tolerance across habitats. Expression of critical ion transporters is localized in newly discovered Crusalis leg organs. Increased freshwater tolerance is accompanied by costs to development time and greater requirements for food. High‐food concentration increases low‐salinity tolerance, allowing saline populations to invade freshwater habitats. Mechanisms observed here likely have relevance for other taxa undergoing fundamental niche expansions.
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Affiliation(s)
- Carol Eunmi Lee
- Center of Rapid Evolution (CORE) University of Wisconsin Madison WI USA
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18
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Teske PR, Sandoval-Castillo J, Waters JM, Beheregaray LB. Can novel genetic analyses help to identify low-dispersal marine invasive species? Ecol Evol 2014; 4:2848-66. [PMID: 25165524 PMCID: PMC4130444 DOI: 10.1002/ece3.1129] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2014] [Revised: 05/04/2014] [Accepted: 05/06/2014] [Indexed: 01/18/2023] Open
Abstract
Genetic methods can be a powerful tool to resolve the native versus introduced status of populations whose taxonomy and biogeography are poorly understood. The genetic study of introduced species is presently dominated by analyses that identify signatures of recent colonization by means of summary statistics. Unfortunately, such approaches cannot be used in low-dispersal species, in which recently established populations originating from elsewhere in the species' native range also experience periods of low population size because they are founded by few individuals. We tested whether coalescent-based molecular analyses that provide detailed information about demographic history supported the hypothesis that a sea squirt whose distribution is centered on Tasmania was recently introduced to mainland Australia and New Zealand through human activities. Methods comparing trends in population size (Bayesian Skyline Plots and Approximate Bayesian Computation) were no more informative than summary statistics, likely because of recent intra-Tasmanian dispersal. However, IMa2 estimates of divergence between putatively native and introduced populations provided information at a temporal scale suitable to differentiate between recent (potentially anthropogenic) introductions and ancient divergence, and indicated that all three non-Tasmanian populations were founded during the period of European settlement. While this approach can be affected by inaccurate molecular dating, it has considerable (albeit largely unexplored) potential to corroborate nongenetic information in species with limited dispersal capabilities.
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Affiliation(s)
- Peter R Teske
- Molecular Ecology Laboratory, School of Biological Sciences, Flinders University Adelaide, South Australia, 5001, Australia ; Department of Zoology, University of Johannesburg Auckland Park, 2006, Johannesburg, South Africa
| | - Jonathan Sandoval-Castillo
- Molecular Ecology Laboratory, School of Biological Sciences, Flinders University Adelaide, South Australia, 5001, Australia
| | - Jonathan M Waters
- Department of Zoology, University of Otago PO Box 56, Dunedin, New Zealand
| | - Luciano B Beheregaray
- Molecular Ecology Laboratory, School of Biological Sciences, Flinders University Adelaide, South Australia, 5001, Australia
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19
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Darling JA. Genetic studies of aquatic biological invasions: closing the gap between research and management. Biol Invasions 2014. [DOI: 10.1007/s10530-014-0726-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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20
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Cryptic speciation or global spread? The case of a cosmopolitan marine invertebrate with limited dispersal capabilities. Sci Rep 2013; 3:3197. [PMID: 24217373 PMCID: PMC3824166 DOI: 10.1038/srep03197] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Accepted: 10/28/2013] [Indexed: 11/08/2022] Open
Abstract
The existence of globally-distributed species with low dispersal capabilities is a paradox that has been explained as a result of human-mediated transport and by hidden diversity in the form of unrecognized cryptic species. Both factors are not mutually exclusive, but relatively few studies have demonstrated the presence of both. Here we analyse the genetic patterns of the colonial ascidian Diplosoma listerianum, a species nowadays distributed globally. The study of a fragment of a mitochondrial gene in localities worldwide revealed the existence of multiple cryptic species. In addition, we found a complex geographic structure and multiple clades occurred in sympatry. One of the species showed strong population structure irrespective of geographical distances, which is coherent with stochastic dispersal linked to human transport. The present study shows the complexity of discerning the role of cryptic diversity from human-driven range shifts worldwide, as well as disentangling the effects of natural and artificial dispersal.
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21
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Swierts T, Peijnenburg KTCA, de Leeuw C, Cleary DFR, Hörnlein C, Setiawan E, Wörheide G, Erpenbeck D, de Voogd NJ. Lock, stock and two different barrels: comparing the genetic composition of morphotypes of the indo-pacific sponge Xestospongia testudinaria. PLoS One 2013; 8:e74396. [PMID: 24069308 PMCID: PMC3771914 DOI: 10.1371/journal.pone.0074396] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2013] [Accepted: 07/31/2013] [Indexed: 11/25/2022] Open
Abstract
The giant barrel sponge Xestospongiatestudinaria is an ecologically important species that is widely distributed across the Indo-Pacific. Little is known, however, about the precise biogeographic distribution and the amount of morphological and genetic variation in this species. Here we provide the first detailed, fine-scaled (<200 km(2)) study of the morphological and genetic composition of X. testudinaria around Lembeh Island, Indonesia. Two mitochondrial (CO1 and ATP6 genes) and one nuclear (ATP synthase β intron) DNA markers were used to assess genetic variation. We identified four distinct morphotypes of X. testudinaria around Lembeh Island. These morphotypes were genetically differentiated with both mitochondrial and nuclear markers. Our results indicate that giant barrel sponges around Lembeh Island, which were all morphologically identified as X. testudinaria, consist of at least two different lineages that appear to be reproductively isolated. The first lineage is represented by individuals with a digitate surface area, CO1 haplotype C5, and is most abundant around the harbor area of Bitung city. The second lineage is represented by individuals with a predominantly smooth surface area, CO1 haplotype C1 and can be found all around Lembeh Island, though to a lesser extent around the harbor of Bitung city. Our findings of two additional unique genetic lineages suggests the presence of an even broader species complex possibly containing more than two reproductively isolated species. The existence of X. testudinaria as a species complex is a surprising result given the size, abundance and conspicuousness of the sponge.
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Affiliation(s)
- Thomas Swierts
- Marine Zoology, Naturalis Biodiversity Center, Leiden, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Katja T. C. A. Peijnenburg
- Marine Zoology, Naturalis Biodiversity Center, Leiden, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Christiaan de Leeuw
- Marine Zoology, Naturalis Biodiversity Center, Leiden, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Daniel F. R. Cleary
- Departamento de Biologia, CESAM, Centro de Estudos do Ambiente e do Mar, Universidade de Aveiro, Aveiro, Portugal
| | - Christine Hörnlein
- Yerseke Marine Microbiology, Royal Netherlands Institute for Sea Research, Yerseke, The Netherlands
| | - Edwin Setiawan
- Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig- Maximilians-Universität München, München, Germany
| | - Gert Wörheide
- Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig- Maximilians-Universität München, München, Germany
- GeoBio-Center, Ludwig-Maximilians-Universität München, München, Germany
- Bayerische Staatssammlung für Paläontologie und Geologie, München, Germany
| | - Dirk Erpenbeck
- Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig- Maximilians-Universität München, München, Germany
- GeoBio-Center, Ludwig-Maximilians-Universität München, München, Germany
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22
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Capa M, Pons J, Hutchings P. Cryptic diversity, intraspecific phenetic plasticity and recent geographical translocations inBranchiomma(Sabellidae, Annelida). ZOOL SCR 2013. [DOI: 10.1111/zsc.12028] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Maria Capa
- Australian Museum; Sydney; NSW; 2010; Australia
| | - Joan Pons
- Instituto Mediterráneo de Estudios Avanzados; c/-Miquel Marquès, 21; 07190-Esporles; Balearic Islands; Spain
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23
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Rius M, Teske PR. Cryptic diversity in coastal Australasia: a morphological and mitonuclear genetic analysis of habitat-forming sibling species. Zool J Linn Soc 2013. [DOI: 10.1111/zoj.12036] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marc Rius
- Centre d'Estudis Avançats de Blanes (CEAB-CSIC); Accés a la Cala S. Francesc 14 17300 Blanes Girona Spain
- Ocean and Earth Science; University of Southampton; National Oceanography Centre; Southampton European Way, Southampton SO14 3ZH UK
| | - Peter R. Teske
- Molecular Ecology Laboratory; School of Biological Sciences; Flinders University; Adelaide SA 5001 Australia
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24
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Rius M, Shenkar N. Ascidian introductions through the Suez Canal: The case study of an Indo-Pacific species. MARINE POLLUTION BULLETIN 2012; 64:2060-2068. [PMID: 22857711 DOI: 10.1016/j.marpolbul.2012.06.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2012] [Revised: 06/27/2012] [Accepted: 06/28/2012] [Indexed: 06/01/2023]
Abstract
Although marine biological invasions via the Suez Canal have been extensively documented, little is known about the introduction of non-indigenous ascidians (Chordata, Ascidiacea), a group containing particularly aggressive invasive species. Here, we used a multidisciplinary approach to study the introduction of the ascidian Herdmania momus into the Mediterranean Sea. We reviewed its taxonomy and global distribution, and analyzed how genetic variation is partitioned between sides of the Suez Canal. The taxonomic revision showed that H. momus currently has a wide Indo-Pacific distribution. Genetic data indicated two well-differentiated colonization histories across the eastern Mediterranean. Our findings suggest that the range expansion of H. momus has been greatly facilitated by the combined effect of human-mediated transport and the species' ability to adapt to different environments. The integrative approach presented here is critical to attain a holistic understanding of marine biological invasions, especially when studying groups with a poorly resolved taxonomy.
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Affiliation(s)
- Marc Rius
- Department of Evolution and Ecology, University of California, Davis, USA.
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25
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Teske PR, Papadopoulos I, Mmonwa KL, Matumba TG, McQuaid CD, Barker NP, Beheregaray LB. Climate-driven genetic divergence of limpets with different life histories across a southeast African marine biogeographic disjunction: different processes, same outcome. Mol Ecol 2011; 20:5025-41. [PMID: 22017655 DOI: 10.1111/j.1365-294x.2011.05307.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Genetic divergence among populations of marine broadcast spawners in the absence of past geological barriers presents an intriguing challenge to understanding speciation in the sea. To determine how differences in life history affect genetic divergence and demographic histories across incomplete dispersal barriers, we conducted a comparative phylogeographic study of three intertidal limpets (Siphonaria spp.) represented on either side of a biogeographic disjunction separating tropical and subtropical marine provinces in southeastern Africa. Using a combination of mitochondrial and nuclear sequence data, we identified two distinct evolutionary lineages each in both Siphonaria concinna (a planktonic disperser) and S. nigerrima (a direct developer), and panmixia in a second planktonic disperser, S. capensis. Although phylogeographic breaks were present in two species, how these became established differed depending on their life histories. In the direct developer, lack of gene flow following divergence, and demographic expansion from a small initial size in the species' subtropical population, point to a single colonisation event. In contrast, the evolutionary lineages of the planktonic disperser split into two genetic lineages with much larger initial population sizes and southward gene flow continued at least periodically, indicating that divergence in this species may have been driven by a combination of reduced larval dispersal and divergent selection. These findings help explain why the presence or absence of phylogeographic breaks often appears to be independent of species' dispersal potential.
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Affiliation(s)
- Peter R Teske
- Department of Zoology and Entomology, Rhodes University, Grahamstown 6140, South Africa.
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