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Wanders K, Chen G, Feng S, Székely T, Urrutia AO. Role-reversed polyandry is associated with faster fast-Z in shorebirds. Proc Biol Sci 2024; 291:20240397. [PMID: 38864333 DOI: 10.1098/rspb.2024.0397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Accepted: 05/14/2024] [Indexed: 06/13/2024] Open
Abstract
In birds, males are homogametic and carry two copies of the Z chromosome ('ZZ'), while females are heterogametic and exhibit a 'ZW' genotype. The Z chromosome evolves at a faster rate than similarly sized autosomes, a phenomenon termed 'fast-Z evolution'. This is thought to be caused by two independent processes-greater Z chromosome genetic drift owing to a reduced effective population size, and stronger Z chromosome positive selection owing to the exposure of partially recessive alleles to selection. Here, we investigate the relative contributions of these processes by considering the effect of role-reversed polyandry on fast-Z in shorebirds, a paraphyletic group of wading birds that exhibit unusually diverse mating systems. We find stronger fast-Z effects under role-reversed polyandry, which is consistent with particularly strong selection on polyandrous females driving the fixation of recessive beneficial alleles. This result contrasts with previous research in birds, which has tended to implicate a primary role of genetic drift in driving fast-Z variation. We suggest that this discrepancy can be interpreted in two ways-stronger sexual selection acting on polyandrous females overwhelms an otherwise central role of genetic drift, and/or sexual antagonism is also contributing significantly to fast-Z and is exacerbated in sexually dimorphic species.
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Affiliation(s)
- Kees Wanders
- Department of Life Sciences, Milner Centre for Evolution, University of Bath , Bath, UK
- Department of Evolutionary Zoology and Human Biology, HUN-REN-DE Reproductive strategies Research Group, University of Debrecen , Debrecen, Hungary
- Natural History Museum of Denmark, University of Copenhagen , Copenhagen, Denmark
| | - Guangji Chen
- Center for Evolutionary & Organismal Biology, Liangzhu Laboratory, Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , Hangzhou, People's Republic of China
- BGI Research , Wuhan, People's Republic of China
- College of Life Sciences, University of Chinese Academy of Sciences , Beijing, People's Republic of China
| | - Shaohong Feng
- Center for Evolutionary & Organismal Biology, Liangzhu Laboratory, Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , Hangzhou, People's Republic of China
| | - Tamás Székely
- Department of Life Sciences, Milner Centre for Evolution, University of Bath , Bath, UK
- Department of Evolutionary Zoology and Human Biology, HUN-REN-DE Reproductive strategies Research Group, University of Debrecen , Debrecen, Hungary
- Debrecen Biodiversity Centre, University of Debrecen , Debrecen, Hungary
| | - Arraxi O Urrutia
- Department of Life Sciences, Milner Centre for Evolution, University of Bath , Bath, UK
- Instituto de Ecologia, UNAM , Mexico City, Mexico
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Koppik M, Baur J, Berger D. Increased male investment in sperm competition results in reduced maintenance of gametes. PLoS Biol 2023; 21:e3002049. [PMID: 37014875 PMCID: PMC10072457 DOI: 10.1371/journal.pbio.3002049] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 02/22/2023] [Indexed: 04/05/2023] Open
Abstract
Male animals often show higher mutation rates than their female conspecifics. A hypothesis for this male bias is that competition over fertilization of female gametes leads to increased male investment into reproduction at the expense of maintenance and repair, resulting in a trade-off between male success in sperm competition and offspring quality. Here, we provide evidence for this hypothesis by harnessing the power of experimental evolution to study effects of sexual selection on the male germline in the seed beetle Callosobruchus maculatus. We first show that 50 generations of evolution under strong sexual selection, coupled with experimental removal of natural selection, resulted in males that are more successful in sperm competition. We then show that these males produce progeny of lower quality if engaging in sociosexual interactions prior to being challenged to surveil and repair experimentally induced damage in their germline and that the presence of male competitors alone can be enough to elicit this response. We identify 18 candidate genes that showed differential expression in response to the induced germline damage, with several of these previously implicated in processes associated with DNA repair and cellular maintenance. These genes also showed significant expression changes across sociosexual treatments of fathers and predicted the reduction in quality of their offspring, with expression of one gene also being strongly correlated to male sperm competition success. Sex differences in expression of the same 18 genes indicate a substantially higher female investment in germline maintenance. While more work is needed to detail the exact molecular underpinnings of our results, our findings provide rare experimental evidence for a trade-off between male success in sperm competition and germline maintenance. This suggests that sex differences in the relative strengths of sexual and natural selection are causally linked to male mutation bias. The tenet advocated here, that the allocation decisions of an individual can affect plasticity of its germline and the resulting genetic quality of subsequent generations, has several interesting implications for mate choice processes.
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Affiliation(s)
- Mareike Koppik
- Department of Ecology and Genetics, Animal Ecology, Uppsala University, Uppsala, Sweden
- Department of Zoology, Animal Ecology, Martin-Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Julian Baur
- Department of Ecology and Genetics, Animal Ecology, Uppsala University, Uppsala, Sweden
| | - David Berger
- Department of Ecology and Genetics, Animal Ecology, Uppsala University, Uppsala, Sweden
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3
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Abstract
Charles Darwin published his second book “Sexual selection and the descent of man” in 1871 150 years ago, to try to explain, amongst other things, the evolution of the peacock’s train, something that he famously thought was problematic for his theory of evolution by natural selection. He proposed that the peacock’s train had evolved because females preferred to mate with males with more elaborate trains. This idea was very controversial at the time and it wasn’t until 1991 that a manuscript testing Darwin’s hypothesis was published. The idea that a character could arise as a result of a female preference is still controversial. Some argue that there is no need to distinguish sexual from natural selection and that natural selection can adequately explain the evolution of extravagant characteristics that are characteristic of sexually selected species. Here, I outline the reasons why I think that this is not the case and that Darwin was right to distinguish sexual selection as a distinct process. I present a simple verbal and mathematical model to expound the view that sexual selection is profoundly different from natural selection because, uniquely, it can simultaneously promote and maintain the genetic variation which fuels evolutionary change. Viewed in this way, sexual selection can help resolve other evolutionary conundrums, such as the evolution of sexual reproduction, that are characterised by having impossibly large costs and no obvious immediate benefits and which have baffled evolutionary biologists for a very long time. If sexual selection does indeed facilitate rapid adaptation to a changing environment as I have outlined, then it is very important that we understand the fundamentals of adaptive mate choice and guard against any disruption to this natural process.
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Ding ZF, Zhang CL, Zhang WS, Yuan QM, Wang LW, Ren G, Li E, Hu HJ, Liang W. Determining the level of extra-pair paternity in yellow-bellied prinias, a socially monogamous passerine. Zool Res 2021; 42:108-115. [PMID: 32987453 PMCID: PMC7840452 DOI: 10.24272/j.issn.2095-8137.2020.079] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Previous work based on molecular evidence has shown that most socially monogamous birds follow a genetic polyandrous mating system. However, our knowledge about avian mating systems is heavily biased toward the north temperate zone, with data on tropical birds remaining relatively scarce. This uneven distribution of both phylogenetic and spatial sampling has hampered our understanding and interpretation of results. In this study, we investigated the frequency of extra-pair paternity (EPP) in a tropical population of yellow-bellied prinias (Prinia flaviventris) in Guangxi, southern China. A total of 129 individuals belonging to 24 nests were sampled, among which 12 out of 83 chicks (14.46%) in seven nests were found to be EPP offspring. In nests in which all nestlings were sampled, only five out of 56 chicks were EPP offspring, accounting for an unbiased EPP rate of 8.93%. This rate is below the average rate of EPP in the family Sylviidae. The possible causes of EPP in prinias and the occurrence of EPP in birds with high resource investment and intensive parental care are discussed. This study highlights the value of genome-wide markers in determining relatedness in a wild bird species without a reference genome.
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Affiliation(s)
- Zhi-Feng Ding
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510260, China
| | - Chun-Lan Zhang
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510260, China
| | - Wen-Sui Zhang
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510260, China
| | - Qian-Min Yuan
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510260, China
| | - Long-Wu Wang
- State Forestry Administration of China Key Laboratory for Biodiversity Conservation in Mountainous Areas of Southwest Karst, School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou 550001, China
| | - Gang Ren
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510260, China.,College of Life Sciences, Anhui Normal University, Wuhu, Anhui 241000, China
| | - En Li
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui 241000, China
| | - Hui-Jian Hu
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510260, China. E-mail:
| | - Wei Liang
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, College of Life Sciences, Hainan Normal University, Haikou, Hainan 571158, China. E-mail:
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5
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Experimental evidence for effects of sexual selection on condition-dependent mutation rates. Nat Ecol Evol 2020; 4:737-744. [DOI: 10.1038/s41559-020-1140-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 02/10/2020] [Indexed: 01/13/2023]
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6
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Iglesias-Carrasco M, Jennions MD, Ho SYW, Duchêne DA. Sexual selection, body mass and molecular evolution interact to predict diversification in birds. Proc Biol Sci 2020; 286:20190172. [PMID: 30890097 DOI: 10.1098/rspb.2019.0172] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Sexual selection is a powerful agent of evolution, driving microevolutionary changes in the genome and macroevolutionary rates of lineage diversification. The mechanisms by which sexual selection might influence macroevolution remain poorly understood. For example, sexual selection might drive positive selection for key adaptations that facilitate diversification. Furthermore, sexual selection might be a general driver of molecular evolutionary rate. We lay out some of the potential mechanisms that create a link between sexual selection and diversification, based on causal effects on other life-history traits such as body mass and the rate of molecular evolution. Birds are ideally suited for testing the importance of these relationships because of their diverse reproductive systems and the multiple evolutionary radiations that have produced their astounding modern diversity. We show that sexual selection (measured as the degree of polygyny) interacts with the rate of molecular evolution and with body mass to predict species richness at the genus level. A high degree of polygyny and rapid molecular evolution are positively associated with the net rate of diversification, with the two factors being especially important for explaining diversification in large-bodied taxa. Our findings further suggest that mutation rates underpin some of the macroevolutionary effects of sexual selection. We synthesize the existing theory on sexual selection as a force for diversity and propose avenues for exploring this association using genome data.
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Affiliation(s)
- Maider Iglesias-Carrasco
- 1 Research School of Biology, Australian National University , Canberra, Australian Capital Territory 2601 , Australia
| | - Michael D Jennions
- 1 Research School of Biology, Australian National University , Canberra, Australian Capital Territory 2601 , Australia
| | - Simon Y W Ho
- 2 School of Life and Environmental Sciences, University of Sydney , Sydney, New South Wales 2006 , Australia
| | - David A Duchêne
- 1 Research School of Biology, Australian National University , Canberra, Australian Capital Territory 2601 , Australia.,2 School of Life and Environmental Sciences, University of Sydney , Sydney, New South Wales 2006 , Australia
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7
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Kelly CD. Rate and success of study replication in ecology and evolution. PeerJ 2019; 7:e7654. [PMID: 31565572 PMCID: PMC6743472 DOI: 10.7717/peerj.7654] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 08/10/2019] [Indexed: 01/06/2023] Open
Abstract
The recent replication crisis has caused several scientific disciplines to self-reflect on the frequency with which they replicate previously published studies and to assess their success in such endeavours. The rate of replication, however, has yet to be assessed for ecology and evolution. Here, I survey the open-access ecology and evolution literature to determine how often ecologists and evolutionary biologists replicate, or at least claim to replicate, previously published studies. I found that approximately 0.023% of ecology and evolution studies are described by their authors as replications. Two of the 11 original-replication study pairs provided sufficient statistical detail for three effects so as to permit a formal analysis of replication success. Replicating authors correctly concluded that they replicated an original effect in two cases; in the third case, my analysis suggests that the finding by the replicating authors was consistent with the original finding, contrary the conclusion of “replication failure” by the authors.
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Affiliation(s)
- Clint D Kelly
- Département des Sciences biologiques, Université du Québec à Montréal, Montréal, Quebec, Canada
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8
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Patiño S, Keever CC, Sunday JM, Popovic I, Byrne M, Hart MW. SpermBindinDivergence under Sexual Selection and Concerted Evolution in Sea Stars. Mol Biol Evol 2016; 33:1988-2001. [DOI: 10.1093/molbev/msw081] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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9
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Power DJ, Holman L. Assessing the alignment of sexual and natural selection using radiomutagenized seed beetles. J Evol Biol 2015; 28:1039-48. [DOI: 10.1111/jeb.12625] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Revised: 03/16/2015] [Accepted: 03/18/2015] [Indexed: 12/01/2022]
Affiliation(s)
- D. J. Power
- Division of Evolution, Ecology & Genetics; Research School of Biology; Australian National University; Canberra ACT Australia
| | - L. Holman
- Division of Evolution, Ecology & Genetics; Research School of Biology; Australian National University; Canberra ACT Australia
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10
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Wong A. Covariance between Testes Size and Substitution Rates in Primates. Mol Biol Evol 2014; 31:1432-6. [DOI: 10.1093/molbev/msu091] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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11
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Ramm SA, Schärer L. The evolutionary ecology of testicular function: size isn't everything. Biol Rev Camb Philos Soc 2014; 89:874-88. [DOI: 10.1111/brv.12084] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2013] [Revised: 12/23/2013] [Accepted: 01/12/2014] [Indexed: 12/22/2022]
Affiliation(s)
- Steven A. Ramm
- Evolutionary Biology; Bielefeld University; Morgenbreede 45 33615 Bielefeld Germany
| | - Lukas Schärer
- Evolutionary Biology; Zoological Institute, University of Basel; Vesalgasse 1 4051 Basel Switzerland
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12
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Hill GE, Johnson JD. The mitonuclear compatibility hypothesis of sexual selection. Proc Biol Sci 2013; 280:20131314. [PMID: 23945683 DOI: 10.1098/rspb.2013.1314] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Why females assess ornaments when choosing mates remains a central question in evolutionary biology. We hypothesize that the imperative for a choosing female to find a mate with nuclear oxidative phosphorylation (OXPHOS) genes that are compatible with her mitochondrial OXPHOS genes drives the evolution of ornaments. Indicator traits are proposed to signal the efficiency of OXPHOS function thus enabling females to select mates with nuclear genes that are compatible with maternal mitochondrial genes in the formation of OXPHOS complexes. Species-typical pattern of ornamentation is proposed to serve as a marker of mitochondrial type ensuring that females assess prospective mates with a shared mitochondrial background. The mitonuclear compatibility hypothesis predicts that the production of ornaments will be closely linked to OXPHOS pathways, and that sexual selection for compatible mates will be strongest when genes for nuclear components of OXPHOS complexes are Z-linked. The implications of this hypothesis are that sexual selection may serve as a driver for the evolution of more efficient cellular respiration.
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Affiliation(s)
- Geoffrey E Hill
- Department of Biological Sciences, Auburn University, 331 Funchess Hall, Auburn, AL 36849-5414, USA.
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13
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Morris Goodman's hominoid rate slowdown: the importance of being neutral. Mol Phylogenet Evol 2012; 66:569-74. [PMID: 22902941 DOI: 10.1016/j.ympev.2012.07.031] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2012] [Revised: 07/09/2012] [Accepted: 07/26/2012] [Indexed: 12/30/2022]
Abstract
Half a century ago, when the field of molecular evolution did not even exist, Morris Goodman analyzed profiles of immunological interactions between species and reached the following two remarkable conclusions: first, protein evolution slowed down in the human lineage compared to other primate lineages; second, this slowdown was more pronounced for proteins whose functions were likely to be neutral. It took several decades of research to fully grasp these ideas and document the pattern of hominoid rate slowdown. Along the way, studies of hominoid rate slowdown led to major progresses in understanding determinants of neutral molecular evolution, which in turn is used to calibrate rates of adaptive evolution. Furthermore, the growing knowledge on the origin of mutations provides a basis for understanding differential evolutionary rates between sex chromosomes and autosomes, which has deep implications for inferring human evolutionary histories, and other aspects of molecular evolution. Primate genomics in particular stand to provide critical information in these pursuits, due to the abundance of genomic data, relatively rich documentation of life history traits, and several model systems, including our own species.
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14
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Widespread amplification of amplified fragment length polymorphisms (AFLPs) in marine Antarctic animals. Polar Biol 2011. [DOI: 10.1007/s00300-011-1139-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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15
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Gorelik G, Shackelford TK. Human sexual conflict from molecules to culture. EVOLUTIONARY PSYCHOLOGY 2011; 9:564-87. [PMID: 22947995 PMCID: PMC10426834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2011] [Accepted: 11/26/2011] [Indexed: 06/01/2023] Open
Abstract
Coevolutionary arms races between males and females have equipped both sexes with mutually manipulative and defensive adaptations. These adaptations function to benefit individual reproductive interests at the cost of the reproductive interests of opposite-sex mates, and arise from evolutionary dynamics such as parental investment (unequal reproductive costs between the sexes) and sexual selection (unequal access to opposite-sex mates). Individuals use these adaptations to hijack others' reproductive systems, psychological states, and behaviors--essentially using other individuals as extended phenotypes of themselves. Such extended phenotypic manipulation of sexual rivals and opposite-sex mates is enacted by humans with the aid of hormones, pheromones, neurotransmitters, emotions, language, mind-altering substances, social institutions, technologies, and ideologies. Furthermore, sexual conflict may be experienced at an individual level when maternal genes and paternal genes are in conflict within an organism. Sexual conflict may be physically and emotionally destructive, but may also be exciting and constructive for relationships. By extending the biological concept of sexual conflict into social and cultural domains, scholars may successfully bridge many of the interdisciplinary gaps that separate the sciences from the humanities.
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Affiliation(s)
- Gregory Gorelik
- Department of Psychology, Florida Atlantic University, Boca Raton, FL, USA.
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16
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Abstract
Coevolutionary arms races between males and females have equipped both sexes with mutually manipulative and defensive adaptations. These adaptations function to benefit individual reproductive interests at the cost of the reproductive interests of opposite-sex mates, and arise from evolutionary dynamics such as parental investment (unequal reproductive costs between the sexes) and sexual selection (unequal access to opposite-sex mates). Individuals use these adaptations to hijack others' reproductive systems, psychological states, and behaviors—essentially using other individuals as extended phenotypes of themselves. Such extended phenotypic manipulation of sexual rivals and opposite-sex mates is enacted by humans with the aid of hormones, pheromones, neurotransmitters, emotions, language, mind-altering substances, social institutions, technologies, and ideologies. Furthermore, sexual conflict may be experienced at an individual level when maternal genes and paternal genes are in conflict within an organism. Sexual conflict may be physically and emotionally destructive, but may also be exciting and constructive for relationships. By extending the biological concept of sexual conflict into social and cultural domains, scholars may successfully bridge many of the interdisciplinary gaps that separate the sciences from the humanities.
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Affiliation(s)
- Gregory Gorelik
- Department of Psychology, Florida Atlantic University, Boca Raton, FL, USA
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17
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Wilson Sayres MA, Venditti C, Pagel M, Makova KD. Do variations in substitution rates and male mutation bias correlate with life-history traits? A study of 32 mammalian genomes. Evolution 2011; 65:2800-15. [PMID: 21967423 DOI: 10.1111/j.1558-5646.2011.01337.x] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Life-history traits vary substantially across species, and have been demonstrated to affect substitution rates. We compute genome-wide, branch-specific estimates of male mutation bias (the ratio of male-to-female mutation rates) across 32 mammalian genomes and study how these vary with life-history traits (generation time, metabolic rate, and sperm competition). We also investigate the influence of life-history traits on substitution rates at unconstrained sites across a wide phylogenetic range. We observe that increased generation time is the strongest predictor of variation in both substitution rates (for which it is a negative predictor) and male mutation bias (for which it is a positive predictor). Although less significant, we also observe that estimates of metabolic rate, reflecting replication-independent DNA damage and repair mechanisms, correlate negatively with autosomal substitution rates, and positively with male mutation bias. Finally, in contrast to expectations, we find no significant correlation between sperm competition and either autosomal substitution rates or male mutation bias. Our results support the important but frequently opposite effects of some, but not all, life-history traits on substitution rates.
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Affiliation(s)
- Melissa A Wilson Sayres
- Department of Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
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18
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Anmarkrud JA, Kleven O, Augustin J, Bentz KH, Blomqvist D, Fernie KJ, Magrath MJL, Pärn H, Quinn JS, Robertson RJ, Szép T, Tarof S, Wagner RH, Lifjeld JT. Factors affecting germline mutations in a hypervariable microsatellite: a comparative analysis of six species of swallows (Aves: Hirundinidae). Mutat Res 2011; 708:37-43. [PMID: 21291898 DOI: 10.1016/j.mrfmmm.2011.01.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2010] [Revised: 01/07/2011] [Accepted: 01/24/2011] [Indexed: 05/30/2023]
Abstract
Microsatellites mutate frequently by replication slippage. Empirical evidence shows that the probability of such slippage mutations may increase with the length of the repeat region as well as exposure to environmental mutagens, but the mutation rate can also differ between the male and female germline. It has been hypothesized that more intense sexual selection or sperm competition can also lead to elevated mutation rates, but the empirical evidence is inconclusive. Here, we analyzed the occurrence of germline slippage mutations in the hypervariable pentanucleotide microsatellite locus HrU10 across six species of swallow (Aves: Hirundinidae). These species exhibit marked differences in the length range of the microsatellite, as well as differences in the intensity of sperm competition. We found a strong effect of microsatellite length on the probability of mutation, but no residual effect of species or their level of sperm competition when the length effect was accounted for. Neither could we detect any difference in mutation rate between tree swallows (Tachycineta bicolor) breeding in Hamilton Harbour, Ontario, an industrial site with previous documentation of elevated mutation rates for minisatellite DNA, and a rural reference population. However, our cross-species analysis revealed two significant patterns of sex differences in HrU10 germline mutations: (1) mutations in longer alleles occurred typically in the male germline, those in shorter alleles in the female germline, and (2) male germline mutations were more often expansions than contractions, whereas no directional bias was evident in the female germline. These results indicate some fundamental differences in male and female gametogenesis affecting the probability of slippage mutations. Our study also reflects the value of a comparative, multi-species approach for locus-specific mutation analyses, through which a wider range of influential factors can be assessed than in single-species studies.
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Affiliation(s)
- Jarl A Anmarkrud
- National Centre for Biosystematics, Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, NO-0318 Oslo, Norway.
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19
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Wong A. Testing the effects of mating system variation on rates of molecular evolution in primates. Evolution 2011; 64:2779-85. [PMID: 20497215 DOI: 10.1111/j.1558-5646.2010.01038.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Post-copulatory sexual selection has been proposed to drive the rapid evolution of reproductive proteins, and, more recently,to increase genome-wide mutation rates. Comparisons of rates of molecular evolution between lineages with different levels of female multiple mating represent a promising, but under-utilized, approach for testing the effects of sperm competition on sequence evolution. Here, I use comparisons between primate species with divergent mating systems to examine the effects of sperm competition on reproductive protein evolution, as well as on sex-averaged mutation rates. Rates of nonsynonymous substitution are higher for testis-specific genes along the chimpanzee lineage in comparison to the human lineage, consistent with expectations. However, the data reported here do not allow firm conclusions concerning the effects of mating system on genome-wide mutation rates, with different results obtained from different species pairs. Ultimately, comparative studies encompassing a range of mating systems and other life history traits will be required to make broad generalizations concerning the genomic effects of sperm competition.
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Affiliation(s)
- Alex Wong
- Department of Biology, University of Ottawa, 30 Marie-Curie, Ottawa, Ontario, Canada.
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20
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Møller AP, Cuervo JJ. Minisatellite mutation rates increase with extra-pair paternity among birds. BMC Evol Biol 2009; 9:100. [PMID: 19442282 PMCID: PMC2693433 DOI: 10.1186/1471-2148-9-100] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2009] [Accepted: 05/14/2009] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Amos suggested recently that a previously reported positive relationship between minisatellite mutation rates and extra-pair paternity among species of birds was confounded by transcription errors and selective inclusion of studies. Here we attempted to replicate the results reported by Amos, but also tested for the relationship by expanding the data base by including studies published after our original paper. RESULTS We were able to replicate the positive association between mutation rate and extra-pair paternity in birds, even after controlling statistically for the confounding effecs of mean number of bands scored, using 133 species, compared to 81 species in our first report 2. We suggest that Amos failed to reach a similar conclusion due to four different potential causes of bias. First, Amos missed 15 studies from the literature that we were able to include. Second, he used estimates of mutation rates that were based on both within- and extra-pair offspring, although the latter will cause bias in estimates. Third, he made a number of transcription errors from the original publications for extra-pair paternity, mutation rates, number of novel bands, and mean number of bands scored per individual. Fourth, he included Vireo olivaceus although the mutation rate estimate was based on one single offspring! CONCLUSION There was a positive association between mutation rates and extra-pair paternity in birds, accounting for an intermediate effect size that explained 5-11% of the variance; estimates that are bound to be conservative due to many different causes of noise in the data. This result was robust to statistical control for potentially confounding variables, highlighting that it is important to base comparative studies on all available evidence, and that it is crucial to critically transcribe data while simultaneously checking published estimates for their correctness.
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Hale ML, Verduijn MH, Møller AP, Wolff K, Petrie M. Is the peacock's train an honest signal of genetic quality at the major histocompatibility complex? J Evol Biol 2009; 22:1284-94. [PMID: 19453370 DOI: 10.1111/j.1420-9101.2009.01746.x] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Peacocks are a classic example of sexual selection, where females preferentially mate with males who have longer, more elaborate trains. One of the central hypotheses of sexual selection theory is that large or elaborate male 'ornaments' may signal high genetic quality (good genes). Good genes are thought to be those associated with disease resistance and as diversity at the major histocompatibility complex (MHC) has been shown to equate to superior immune responses, we test whether the peacock's train reveals genetic diversity at the MHC. We demonstrate via a captive breeding experiment that train length of adult males reflects genetic diversity at the MHC while controlling for genome-wide diversity and that peahens lay more, and larger, eggs for males with a more diverse MHC, but not for males with longer trains. Our results suggest that females are assessing and responding to male quality in terms of MHC diversity, but this assessment does not appear to be via train length, despite the fact that train length reflects MHC diversity.
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Affiliation(s)
- M L Hale
- School of Biological Sciences, University of Canterbury, Christchurch, New Zealand.
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Amos W. Sexual selection does not influence minisatellite mutation rate. BMC Evol Biol 2009; 9:5. [PMID: 19133116 PMCID: PMC2636768 DOI: 10.1186/1471-2148-9-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2008] [Accepted: 01/08/2009] [Indexed: 11/26/2022] Open
Abstract
Background Moller and Cuervo report a significant trend between minisatellite mutation rate and the frequency of extra-pair copulations in birds. This is interpreted as evidence that the high rate of evolution demanded by sexual selection has itself selected for a higher mutation rate in species where selection is strongest. However, there are good a priori reasons for believing that their method of calculating minisatellite mutation rates will be highly error prone and a poor surrogate measure of the evolutionary rate of genes. I therefore attempted to replicate their results using both their data and an independent data set based on papers they failed to locate. Results I find that Moller and Cuervo's data set contains numerous errors that act somewhat to strengthen their key regression. More importantly, data from uncited papers fail to replicate their reported trend and one species in particular, Vireo olivaceus, is apparently deliberately omitted, yet its inclusion removes significance from the original correlation. Over the small number of cases were comparisons can be made, mutation rate estimates do not differ between species but do vary significantly depending on the laboratory/operator. Conclusion There appears to be no clear relationship between minisatellite mutation rate and EPC rate in birds. The previously reported trend can be attributed to data transcription errors and unfortunate data selection. My analysis highlights the importance of total methodological transparency when conducting meta-analyses.
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Affiliation(s)
- William Amos
- Department of Zoology, Cambridge University, Cambridge, UK.
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Velando A, Torres R, Alonso-Alvarez C. Avoiding bad genes: oxidatively damaged DNA in germ line and mate choice. Bioessays 2008; 30:1212-9. [DOI: 10.1002/bies.20838] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Jousselin E, Van Noort S, Berry V, Rasplus JY, Rønsted N, Erasmus JC, Greeff JM. ONE FIG TO BIND THEM ALL: HOST CONSERVATISM IN A FIG WASP COMMUNITY UNRAVELED BY COSPECIATION ANALYSES AMONG POLLINATING AND NONPOLLINATING FIG WASPS. Evolution 2008; 62:1777-1797. [PMID: 18419750 DOI: 10.1111/j.1558-5646.2008.00406.x] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Emmanuelle Jousselin
- Institut National de la Recherche Agronomique, Centre de Biologie et de Gestion des Populations, Campus International de Baillarguet, CS-30 016, 34 988 Montferrier sur Lez, France
- E-mail:
| | - Simon Van Noort
- Natural History Division, South African Museum, Iziko Museums of Cape Town, PO Box 61, Cape Town 8000, South Africa
| | - Vincent Berry
- Département Informatique, LIRMM- CNRS, 161, rue Ada 34392 Montpellier Cedex 5, France
| | - Jean-Yves Rasplus
- Institut National de la Recherche Agronomique, Centre de Biologie et de Gestion des Populations, Campus International de Baillarguet, CS-30 016, 34 988 Montferrier sur Lez, France
| | - Nina Rønsted
- Jodrell Laboratory, Royal Botanic Gardens, Kew, TW9 3DS Richmond, Surrey, United Kingdom
| | | | - Jaco M Greeff
- Department of Genetics, University of Pretoria, Pretoria 0002, South Africa
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25
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Zhao Y, Epstein RJ. Programmed genetic instability: a tumor-permissive mechanism for maintaining the evolvability of higher species through methylation-dependent mutation of DNA repair genes in the male germ line. Mol Biol Evol 2008; 25:1737-49. [PMID: 18535014 PMCID: PMC2464741 DOI: 10.1093/molbev/msn126] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Tumor suppressor genes are classified by their somatic behavior either as caretakers (CTs) that maintain DNA integrity or as gatekeepers (GKs) that regulate cell survival, but the germ line role of these disease-related gene subgroups may differ. To test this hypothesis, we have used genomic data mining to compare the features of human CTs (n = 38), GKs (n = 36), DNA repair genes (n = 165), apoptosis genes (n = 622), and their orthologs. This analysis reveals that repair genes are numerically less common than apoptosis genes in the genomes of multicellular organisms (P < 0.01), whereas CT orthologs are commoner than GK orthologs in unicellular organisms (P < 0.05). Gene targeting data show that CTs are less essential than GKs for survival of multicellular organisms (P < 0.0005) and that CT knockouts often permit offspring viability at the cost of male sterility. Patterns of human familial oncogenic mutations confirm that isolated CT loss is commoner than is isolated GK loss (P < 0.00001). In sexually reproducing species, CTs appear subject to less efficient purifying selection (i.e., higher Ka/Ks) than GKs (P = 0.000003); the faster evolution of CTs seems likely to be mediated by gene methylation and reduced transcription-coupled repair, based on differences in dinucleotide patterns (P = 0.001). These data suggest that germ line CT/repair gene function is relatively dispensable for survival, and imply that milder (e.g., epimutational) male prezygotic repair defects could enhance sperm variation—and hence environmental adaptation and speciation—while sparing fertility. We submit that CTs and repair genes are general targets for epigenetically initiated adaptive evolution, and propose a model in which human cancers arise in part as an evolutionarily programmed side effect of age- and damage-inducible genetic instability affecting both somatic and germ line lineages.
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Affiliation(s)
- Yongzhong Zhao
- Laboratory of Computational Oncology, Faculty of Medicine, The University of Hong Kong, Pokfulam, Hong Kong
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Nadeau NJ, Burke T, Mundy NI. Evolution of an avian pigmentation gene correlates with a measure of sexual selection. Proc Biol Sci 2007; 274:1807-13. [PMID: 17504743 PMCID: PMC2270924 DOI: 10.1098/rspb.2007.0174] [Citation(s) in RCA: 83] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2007] [Revised: 04/25/2007] [Accepted: 04/26/2007] [Indexed: 11/12/2022] Open
Abstract
The extravagant plumage traits of male birds are a favourite example of sexual selection. However, to date the units that selection is acting upon, the genes themselves have been a 'black box'. Here, we report evidence of change driven by sexual selection at a pigmentation gene locus in the galliform birds. Across species, we find a correlation between the rate of amino acid change (dN/dS) at this locus (MC1R) and the degree of sexual dichromatism, which we use as a measure of the strength of sexual selection. There is no evidence for a similar pattern in any of five other loci (four candidate and one control locus). This is consistent with previous work on colour polymorphisms and suggests that MC1R may be a key target for selection acting on plumage colour. The pattern of selection at MC1R seems to be consistent with the continuous or cyclical evolution of traits and preferences that is the outcome of several Fisherian and good-genes models of sexual selection. In contrast, we found no support for models of sexual selection that predict an increase in purifying selection as a result of purging of deleterious mutations or for models that predict an increased rate of mutation in association with stronger sexual selection.
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Affiliation(s)
- Nicola J Nadeau
- Department of Zoology, University of CambridgeCambridge CB2 3EJ, UK
| | - Terry Burke
- Department of Animal and Plant Sciences, University of SheffieldSheffield S10 2TN, UK
| | - Nicholas I Mundy
- Department of Zoology, University of CambridgeCambridge CB2 3EJ, UK
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Horth L. Sensory genes and mate choice: Evidence that duplications, mutations, and adaptive evolution alter variation in mating cue genes and their receptors. Genomics 2007; 90:159-75. [PMID: 17544617 DOI: 10.1016/j.ygeno.2007.03.021] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2006] [Revised: 03/05/2007] [Accepted: 03/28/2007] [Indexed: 12/30/2022]
Abstract
Fascinating new data, revealed through gene sequencing, comparative genomics, and genetic engineering, precisely establish which genes are involved in mate choice and mating activity--behaviors that are surprisingly understudied from a genetic perspective. Discussed here are some of the recently identified visual and chemosensory genes that are involved in mate choice and mating behavior. These genes' products are involved in the production, transmission, and receipt of crucial sensory mate-choice cues that affect fitness. This review exposes newfound evidence that alternative splicing, gene-expression pattern changes, and molecular genetic variation in sensory genes are crucial for both intra- and interspecific mate choice and mating success. Many sensory genes have arisen through gene duplications, and data amassed from studies conducted at scales ranging from individual genes to genomic comparisons show that strong, positive Darwinian selection acts on several mating-related genes and that these genes evolve rapidly.
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Affiliation(s)
- Lisa Horth
- Department of Biological Sciences, Old Dominion University, Norfolk, VA 23529, USA.
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Abstract
Mutation has traditionally been considered a random process, but this paradigm is challenged by recent evidence of divergence rate heterogeneity in different genomic regions. One facet of mutation rate variation is the propensity for genetic change to correlate with the number of germ cell divisions, reflecting the replication-dependent origin of many mutations. Haldane was the first to connect this association of replication and mutation to the difference in the number of cell divisions in oogenesis (low) and spermatogenesis (usually high), and the resulting sex difference in the rate of mutation. The concept of male-biased mutation has been thoroughly analysed in recent years using an evolutionary approach, in which sequence divergence of autosomes and/or sex chromosomes are compared to allow inference about the relative contribution of mothers and fathers in the accumulation of mutations. For instance, assuming that a neutral sequence is analysed, that rate heterogeneity owing to other factors is cancelled out by the investigation of many loci and that the effect of ancestral polymorphism is properly taken into account, the male-to-female mutation rate ratio, alpham, can be solved from the observed difference in rate of X and Y chromosome divergence. The male mutation bias is positively correlated with the relative excess of cell divisions in the male compared to the female germ line, as evidenced by a generation time effect: in mammals, alpham is estimated at approximately 4-6 in primates, approximately 3 in carnivores and approximately 2 in small rodents. Another life-history correlate is sexual selection: when there is intense sperm competition among males, increased sperm production will be associated with a larger number of mitotic cell divisions in spermatogenesis and hence an increase in alpham. Male-biased mutation has implications for important aspects of evolutionary biology such as mate choice in relation to mutation load, sexual selection and the maintenance of genetic diversity despite strong directional selection, the tendency for a disproportionate large role of the X (Z) chromosome in post-zygotic isolation, and the evolution of sex.
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Affiliation(s)
- Hans Ellegren
- Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden.
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Saino N, Martinelli R, Biard C, Gil D, Spottiswoode CN, Rubolini D, Surai PF, Møller AP. Maternal immune factors and the evolution of secondary sexual characters. Behav Ecol 2007. [DOI: 10.1093/beheco/arm004] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Cotton S, Pomiankowski A. Evolutionary genetics: Sexually selected mutation rates. Heredity (Edinb) 2007; 98:185-6. [PMID: 17290214 DOI: 10.1038/sj.hdy.6800943] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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Abstract
Here we show that sexual selection can have an effect on the rate of mutation. We simulated the fate of a genetic modifier of the mutation rate in a sexual population with and without sexual selection (modelled using a female choice mechanism). Female choice for 'good genes' should reduce variability among male subjects, leaving insufficient differences to maintain female preferences. However, female choice can actually increase genetic variability by supporting a higher mutation rate in sexually selected traits. Increasing the mutation rate will be selected against because of the resulting decline in mean fitness. However, it also increases the probability of rare beneficial mutations arising, and mating skew caused by female preferences for male subjects carrying those beneficials with few deleterious mutations ('good genes') can lead to a mutation rate above that expected under natural selection. A choice of two male subjects was sufficient for there to be a twofold increase in the mutation rate as opposed to a decrease found under random mating.
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Affiliation(s)
- M Petrie
- Evolution and Behaviour Research Group, School of Biology, University of Newcastle upon Tyne, Newcastle-upon-Tyne, UK.
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Freeman-Gallant CR, Wheelwaright NT, Meiklejohn KE, States SL, Sollecito SV. LITTLE EFFECT OF EXTRAPAIR PATERNITY ON THE OPPORTUNITY FOR SEXUAL SELECTION IN SAVANNAH SPARROWS (PASSERCULUS SANDWICHENISIS). Evolution 2005. [DOI: 10.1111/j.0014-3820.2005.tb01000.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Abstract
A model is described of a highly redundant complex organism that has overlapping banks of genes such that each vital function is specified by several different genetic systems. This generates a synergistic profile linking probability of survival to the number of deleterious mutations in the genome. Computer models show that there is a dynamic interaction between the mean number of new deleterious mutations per generation (X), the mean number of deleterious mutations in the genome of the population (Y) and percentage zygote survival (Zs). Increased X leads to increased Y and a fall in Zs but it takes several generations before a new equilibrium is reached. If sexual attraction is influenced by the number of deleterious mutations in the genome of individuals then Y is reduced and Zs increased for any given value of X. This fall in Y and rise in Zs is more marked in polygamous than monogamous mating systems. The model is specified such that deleterious mutations can occur without any observable or measurable effect on function. Thus sexual selection, in this organism, for low levels of deleterious mutations cannot be based on assessment of performance. Instead it is based on a simple symmetrical surface pattern that is flawlessly reproduced by organisms with no deleterious mutations, but is less than perfect, and therefore less attractive, if genetic systems have been deleted. A complex vital task requires a system with a high level of redundancy that acts so that the loss of one component has no observable effect and therefore cannot be used for sexual selection. The reproduction of a beautiful surface pattern also requires a low error, high redundancy genetic system; however, in this case there is advantage if a single deleterious mutation produces a recognisable change. This leads to the conclusion that sexual selection and sexual attraction should be based on beauty rather than utility, and explains the common observation in nature that it is the most beautiful that survive.
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Affiliation(s)
- R D Morris
- Department of Pathology, Royal Lancaster Infirmary, LA1 4RP, UK
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Freeman-Gallant CR, Wheelwright NT, Meiklejohn KE, States SL, Sollecito SV. LITTLE EFFECT OF EXTRAPAIR PATERNITY ON THE OPPORTUNITY FOR SEXUAL SELECTION IN SAVANNAH SPARROWS (PASSERCULUS SANDWICHENSIS). Evolution 2005. [DOI: 10.1554/04-467] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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