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Balasubramanian VK, Balakrishnan M, Murugan K, John Kennedy JPK, Chou JY, Muthuramalingam JB. Synthesis and characterization of lactide from Bacillus amyloliquefaciens brewed lactic acid utilizing cheap agricultural sources. 3 Biotech 2024; 14:13. [PMID: 38107031 PMCID: PMC10721759 DOI: 10.1007/s13205-023-03855-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 11/13/2023] [Indexed: 12/19/2023] Open
Abstract
Lactic acid (LA) is a nifty molecule with an eclectic range of applications in innumerable industries and is produced through biological and chemical processes. Factually, LA is converted into lactide (LAC), which is the precursor for polylactic acid (PLA). PLA is considered one of the first-rate replacements for petroleum-based products and is believed to be environmentally sustainable. Nevertheless, it has always been challenging due to increased PLA productivity costs. Reduction in the LA and LAC production price directly echoes the production price of PLA. Therefore, low-cost LA and LAC production methods have to be found to produce PLA effectively. Hence, this study uses cheap agricultural sources derived microbial LA to make LAC through dimerization. Produced LAC was analyzed through FT-IR, NMR, TGA and XRD. FT-IR results revealed that the successful dimerization of LA to LAC, NMR analysis revealed that the aligning of methine and methyl groups in produced LAC, TGA analysis exposed that the microbial LAC has more thermal stability than the commercial LAC, XRD results showed that the produced LACs are crystalline with 32% and 42% crystallinity. To the best of our acquaintance, this manuscript is pioneering one to describe LA production through microbial fermentation and uses this monomer to produce LAC through dimerization.
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Affiliation(s)
- Vignesh Kumar Balasubramanian
- Department of Botany, Alagappa University, Karaikudi, Tamil Nadu 630 003 India
- Department of Biology, National Changhua University of Education, Changhua, 500 Taiwan
| | - Muthumari Balakrishnan
- Department of Botany, Alagappa University, Karaikudi, Tamil Nadu 630 003 India
- Department of Biology, National Changhua University of Education, Changhua, 500 Taiwan
| | - Kavitha Murugan
- Department of Botany, Alagappa University, Karaikudi, Tamil Nadu 630 003 India
| | | | - Jui-Yu Chou
- Department of Biology, National Changhua University of Education, Changhua, 500 Taiwan
| | - Jothi Basu Muthuramalingam
- Center for Distance and Online Education (CDOE), Alagappa University, Karaikudi, Tamil Nadu 630 003 India
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Gupta V, Odaneth AA, Lali AM. High cell density continuous fermentation for L-lactic acid production from cane molasses. Prep Biochem Biotechnol 2023; 53:1043-1057. [PMID: 36655700 DOI: 10.1080/10826068.2023.2166956] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Commercial production of lactic acid (LA) utilizes mostly glucose or lactose coupled with yeast extract (YE) as a supplement. With sugars, nitrogen, and vitamin supplementation being most of the LA production costs, the use of inexpensive molasses, a by-product of the sugar industry, can provide considerable cost savings. There are just a few publications on the production of LA from molasses; consequently, the present investigation was conducted using molasses supplemented with yeast extract. The research was done in a continuous-flow, high-cell-density (HCD) bioreactor with an external membrane microfiltration device for cell recycling. The system, run at 1 L with Lactobacillus delbrueckii NCIM 2025, produced a LA yield of 0.95-0.98 g/g from ∼100 g sugars/L when supplemented with 1 g/L YE. Dilution rates in the range of 0.04-0.36 h-1 resulted in volumetric lactic acid productivities in the range of 4.3-27.6 g/L h, which compares favorably with the highest values recorded in literature, for glucose in the presence of YE, which was as high as 30 g/L. The utilization of cane molasses has a significant impact on the economics of lactic acid production, as measured by a comparison of costs with commercial glucose.
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Affiliation(s)
- Vaishali Gupta
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology, Mumbai, India
| | - Annamma A Odaneth
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology, Mumbai, India
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3
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Ge YD, Guo YT, Jiang LL, Wang HH, Hou SL, Su FZ. Enzymatic Characterization and Coenzyme Specificity Conversion of a Novel Dimeric Malate Dehydrogenase from Bacillus subtilis. Protein J 2023; 42:14-23. [PMID: 36534341 PMCID: PMC9761052 DOI: 10.1007/s10930-022-10087-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/14/2022] [Indexed: 12/23/2022]
Abstract
Malate is an important material to various industrials and clinical applications. Bacillus subtilis is a widely used biocatalyst tool for chemical production. However, the specific enzymatic properties of malate dehydrogenase from Bacillus subtilis (BsMDH) remain largely unknown. In the present study, BsMDH was cloned, recombinantly expressed and purified to test its enzymatic properties. The molecular weight of single unit of BsMDH was 34,869.7 Da. Matrix-Assisted Laser-Desorption Ionization-Time-of-Flight Mass Spectrometry and gel filtration analysis indicated that the recombinant BsMDH could form dimers. The kcat/Km values of oxaloacetate and NADH were higher than those of malate and NAD+, respectively, indicating a better catalysis in the direction of malate synthesis than the reverse. Furthermore, six BsMDH mutants were constructed with the substitution of amino acids at the coenzyme binding site. Among them, BsMDH-T7 showed a greatly higher affinity and catalysis efficiency to NADPH than NADH with the degree of alteration of 2039, suggesting the shift of the coenzyme dependence from NADH to NADPH. In addition, BsMDH-T7 showed a relatively lower Km value, but a higher kcat and kcat/Km than NADPH-dependent MDHs from Thermus flavus and Corynebacterium glutamicum. Overall, these results indicated that BsMDH and BsMDH-T7 mutant might be promising enzymes for malate production.
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Affiliation(s)
- Ya-Dong Ge
- College of Life Sciences, Anhui Normal University, Wuhu, 241000, People's Republic of China.
| | - Yi-Tian Guo
- College of Life Sciences, Anhui Normal University, Wuhu, 241000, People's Republic of China
| | - Lu-Lu Jiang
- College of Life Sciences, Anhui Normal University, Wuhu, 241000, People's Republic of China
| | - Hui-Hui Wang
- College of Life Sciences, Anhui Normal University, Wuhu, 241000, People's Republic of China
| | - Shao-Lin Hou
- College of Life Sciences, Anhui Normal University, Wuhu, 241000, People's Republic of China
| | - Feng-Zhi Su
- College of Life Sciences, Anhui Normal University, Wuhu, 241000, People's Republic of China
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Wu N, Zhang J, Chen Y, Xu Q, Song P, Li Y, Li K, Liu H. Recent advances in microbial production of L-malic acid. Appl Microbiol Biotechnol 2022; 106:7973-7992. [PMID: 36370160 DOI: 10.1007/s00253-022-12260-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 10/19/2022] [Accepted: 10/23/2022] [Indexed: 11/14/2022]
Abstract
Over the last few decades, increasing concerns regarding fossil fuel depletion and excessive CO2 emissions have led to extensive fundamental studies and industrial trials regarding microbial chemical production. As an additive or precursor, L-malic acid has been shown to exhibit distinctive properties in the food, pharmaceutical, and daily chemical industries. L-malic acid is currently mainly fabricated through a fumarate hydratase-based biocatalytic conversion route, wherein petroleum-derived fumaric acid serves as a substrate. In this review, for the first time, we comprehensively describe the methods of malic acid strain transformation, raw material utilization, malic acid separation, etc., especially recent progress and remaining challenges for industrial applications. First, we summarize the various pathways involved in L-malic acid biosynthesis using different microorganisms. We also discuss several strain engineering strategies for improving the titer, yield, and productivity of L-malic acid. We illustrate the currently available alternatives for reducing production costs and the existing strategies for optimizing the fermentation process. Finally, we summarize the present challenges and future perspectives regarding the development of microbial L-malic acid production. KEY POINTS: • A range of wild-type, mutant, laboratory-evolved, and metabolically engineered strains which could produce L-malic acid were comprehensively described. • Alternative raw materials for reducing production costs and the existing strategies for optimizing the fermentation were sufficiently summarized. • The present challenges and future perspectives regarding the development of microbial L-malic acid production were elaboratively discussed.
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Affiliation(s)
- Na Wu
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China
| | - Jiahui Zhang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China
| | - Yaru Chen
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China
| | - Qing Xu
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China
| | - Ping Song
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China
| | - Yingfeng Li
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China
| | - Ke Li
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, China.
| | - Hao Liu
- MOE Key Laboratory of Industrial Fermentation Microbiology, College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China. .,Tianjin Engineering Research Center of Microbial Metabolism and Fermentation Process Control, Tianjin University of Science & Technology, Tianjin, China.
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Storage Potential of the Cactus Pear (Opuntia ficus-indica) Fruit Juice and Its Biological and Chemical Evaluation during Fermentation into Cactus Pear Wine. BEVERAGES 2022. [DOI: 10.3390/beverages8040067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The cactus pear (Opuntia ficus-indica) fruit is widely cultivated and grown naturally in arid regions because it is adaptive to a wide range of soil and environments. The pear fruit is inhabited by different micro-organisms and has chemical composition suitable for wine making. Profiling the contributing micro-organisms and evaluating the chemical parameters of cactus pear wine can assist in selecting reliable microbes for use as starter cultures. Spontaneous fermentation was carried out for 13 days and followed by three months of cold storage. Fermenting microbes were isolated, characterised and identified. The chemical parameters, namely, sugar concentration, ethanol concentration, pH and total acidity, were analysed. A total of 22 micro-organisms were identified, among which nine yeast species, two acetic acid bacteria (Gluconobacter spp.) and eight Bacillus spp. were isolated. The simple sugars were used up, and ethanol was produced to a high concentration of 50.9 g/L. The pH ranged between 2.8 and 2.9; hence, a maximum total acidity of ±25 g/100 mL was achieved. At least 78% of the available tannins were used in the early stages of fermentation. Potassium and magnesium were the highest minerals obtained, and zinc was the lowest. The highest ash content obtained was 7.9 g/100 mL. The vitamin C content was retained and gradually increased throughout the fermentation process. The findings indicate that lasting flavoured wine can be developed from cactus pear fruit because of the fermenting microbes and the chemical composition of the fruit.
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Isolation and Characterization of Bacteria and Fungi Associated with Agarwood Fermentation. Curr Microbiol 2022; 79:313. [DOI: 10.1007/s00284-022-02999-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Accepted: 08/14/2022] [Indexed: 11/03/2022]
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Li P, Zhao F, Wei X, Tao X, Ding F. Biological modification of pentosans in wheat B starch wastewater and preparation of a composite film. BMC Biotechnol 2022; 22:4. [PMID: 35039025 PMCID: PMC8764783 DOI: 10.1186/s12896-022-00734-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 01/07/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Petrochemical resources are becoming increasingly scarce, and petroleum-based plastic materials adversely impact the environment. Thus, replacement of petroleum-based materials with new and effective renewable materials is urgently required. RESULTS In this study, a wheat pentosan-degrading bacterium (MXT-1) was isolated from wheat-processing plant wastewater. The MXT-1 strain was identified using molecular biology techniques. The degradation characteristics of the bacteria in wheat pentosan were analyzed. The results show that wheat pentosan was effectively degraded by bacteria. The molecular weight of fermented wheat pentosan decreased from 1730 to 257 kDa. The pentosan before and after the biological modification was mixed with chitosan to prepare a composite film. After fermentation, the water-vapor permeability of the wheat pentosan film decreased from 0.2769 to 0.1286 g mm (m2 h KPa)-1. Results obtained from the Fourier-transformed infrared experiments demonstrate that the wave number of the hydroxyl-stretching vibration peak of the membrane material decreased, and the width of the peak widened. The diffraction peak of the film shifted to the higher 2θ, as seen using X-ray diffraction. The cross-section of the modified composite membrane was observed via scanning electron microscopy, which revealed that the structure was denser; however, no detectable phase separation was observed. These results may indicate improved molecular compatibility between wheat pentosan and chitosan and stronger hydrogen bonding between the molecules. Given the increased number of short-chain wheat pentosan molecules, although the tensile strength of the film decreased, its flexibility increased after fermentation modification. CONCLUSION The findings of this study established that the physical properties of polysaccharide films can be improved using strain MXT-1 to ferment and modify wheat pentosan. The compatibility and synergy between pentosan and chitosan molecules was substantially enhanced, and hydrogen bonding was strengthened after biological modification. Therefore, modified pentosan film could be a potential candidate material for edible packaging films.
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Affiliation(s)
- Piwu Li
- School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Daxue Road 3501, Changqing District, Jinan, 250353, People's Republic of China.,State Key Laboratory of Biobased Material and Green Papermaking (LBMP), Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250353, People's Republic of China
| | - Fei Zhao
- School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Daxue Road 3501, Changqing District, Jinan, 250353, People's Republic of China.,State Key Laboratory of Biobased Material and Green Papermaking (LBMP), Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250353, People's Republic of China
| | - Xiaofeng Wei
- School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Daxue Road 3501, Changqing District, Jinan, 250353, People's Republic of China.,State Key Laboratory of Biobased Material and Green Papermaking (LBMP), Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250353, People's Republic of China
| | - Xiangling Tao
- School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Daxue Road 3501, Changqing District, Jinan, 250353, People's Republic of China.,State Key Laboratory of Biobased Material and Green Papermaking (LBMP), Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250353, People's Republic of China
| | - Feng Ding
- School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Daxue Road 3501, Changqing District, Jinan, 250353, People's Republic of China. .,State Key Laboratory of Biobased Material and Green Papermaking (LBMP), Qilu University of Technology, Shandong Academy of Sciences, Jinan, 250353, People's Republic of China.
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8
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Lactic Acid Bacteria Bacteriocin, an Antimicrobial Peptide Effective Against Multidrug Resistance: a Comprehensive Review. Int J Pept Res Ther 2021. [DOI: 10.1007/s10989-021-10317-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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9
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Park SA, Bhatia SK, Park HA, Kim SY, Sudheer PDVN, Yang YH, Choi KY. Bacillus subtilis as a robust host for biochemical production utilizing biomass. Crit Rev Biotechnol 2021; 41:827-848. [PMID: 33622141 DOI: 10.1080/07388551.2021.1888069] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Bacillus subtilis is regarded as a suitable host for biochemical production owing to its excellent growth and bioresource utilization characteristics. In addition, the distinct endogenous metabolic pathways and the suitability of the heterologous pathways have made B. subtilis a robust and promising host for producing biochemicals, such as: bioalcohols; bioorganic acids (lactic acids, α-ketoglutaric acid, and γ-aminobutyric acid); biopolymers (poly(γ-glutamic acid, polyhydroxyalkanoates (PHA), and polysaccharides and monosaccharides (N-acetylglucosamine, xylooligosaccharides, and hyaluronic acid)); and bioflocculants. Also for producing oligopeptides and functional peptides, owing to its efficient protein secretion system. Several metabolic and genetic engineering techniques, such as target gene overexpression and inactivation of bypass pathways, have led to the improvement in production titers and product selectivity. In this review article, recent progress in the utilization of robust B. subtilis-based host systems for biomass conversion and biochemical production has been highlighted, and the prospects of such host systems are suggested.
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Affiliation(s)
- Seo A Park
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, South Korea
| | - Shashi Kant Bhatia
- Department of Biological Engineering, College of Engineering, Konkuk University, Seoul, Republic of Korea.,Institute for Ubiquitous Information Technology and Application, Konkuk University, Seoul, Republic of Korea
| | - Hyun A Park
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, South Korea
| | - Seo Yeong Kim
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, South Korea
| | | | - Yung-Hun Yang
- Department of Biological Engineering, College of Engineering, Konkuk University, Seoul, Republic of Korea.,Institute for Ubiquitous Information Technology and Application, Konkuk University, Seoul, Republic of Korea
| | - Kwon-Young Choi
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, South Korea.,Department of Environmental and Safety Engineering, College of Engineering, Ajou University, Suwon, South Korea
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Castillo Alfonso F, Vigueras-Ramírez G, Rosales-Colunga LM, Del Monte-Martínez A, Olivares Hernández R. Propionate as the preferred carbon source to produce 3-indoleacetic acid in B. subtilis: comparative flux analysis using five carbon sources. Mol Omics 2021; 17:554-564. [PMID: 33972977 DOI: 10.1039/d1mo00039j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
3-Indoleacetic acid (IAA) is a phytohormone that promotes plant root growth, improving the use of nutrients and crop yield and it is been reported that bacteria of the genus Bacillus are capable of producing this phytohormone under various growth conditions. Considering this metabolic capability, in this work, Bacillus subtilis was cultivated in five different carbon sources: glucose, acetate, propionate, citrate and glycerol; and l-tryptophan (Trp) was used as an inducer for the IAA production. Based on the experimental results it was observed that the highest growth rate was achieved using glucose as a carbon source (μ = 0.12 h-1) and the lowest value was for citrate (μ = 0.08 h-1). On the other hand, the highest IAA production was obtained using propionate Yp/s = 0.975 (gIAA gTrp-1) and the lowest was when glucose was the substrate Yp/s = 0.803 (gIAA gTrp-1). In order to explore the metabolism and understand these differences, the experimental data was used to calculate the flux distribution using the genomic-scale metabolic model of Bacillus subtilis. Performing a comparative analysis it is observed that the fluxes towards precursors increase when propionate is the carbon source.
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Affiliation(s)
- Freddy Castillo Alfonso
- Posgrado en Ciencias Naturales e Ingeniería, Universidad Autónoma Metropolitana, Unidad Cuajimalpa, Av. Vasco de Quiroga 4871, Col. Santa Fe Cuajimalpa, Delegación Cuajimalpa, Ciudad de Mexico, 05348, Mexico
| | - Gabriel Vigueras-Ramírez
- Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana, Unidad Cuajimalpa, Av. Vasco de Quiroga 4871, Col. Santa Fe Cuajimalpa, Delegación Cuajimalpa, Ciudad de Mexico, 05348, Mexico.
| | - Luis Manuel Rosales-Colunga
- Facultad de Ingeniería, Universidad Autónoma de San Luis Potosí, Av. Dr Manuel Nava 8, Zona Universitaria, 78290, San Luis Potosí, S.L.P, Mexico
| | - Alberto Del Monte-Martínez
- Centro de Estudios de Proteínas, Univerisdad de La Habana, Calle 25 #455, e/J e I, vedado, 10400, Havana, Cuba
| | - Roberto Olivares Hernández
- Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana, Unidad Cuajimalpa, Av. Vasco de Quiroga 4871, Col. Santa Fe Cuajimalpa, Delegación Cuajimalpa, Ciudad de Mexico, 05348, Mexico.
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Alves KJ, da Silva MCP, Cotta SR, Ottoni JR, van Elsas JD, de Oliveira VM, Andreote FD. Mangrove soil as a source for novel xylanase and amylase as determined by cultivation-dependent and cultivation-independent methods. Braz J Microbiol 2019; 51:217-228. [PMID: 31741310 DOI: 10.1007/s42770-019-00162-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Accepted: 09/19/2019] [Indexed: 11/25/2022] Open
Abstract
Xylanase and α-amylase enzymes participate in the degradation of organic matter, acting in hemicellulose and starch mineralization, respectively, and are in high demand for industrial use. Mangroves represent a promising source for bioprospecting enzymes due to their unique characteristics, such as fluctuations in oxic/anoxic conditions and salinity. In this context, the present work aimed to bioprospect xylanases from mangrove soil using cultivation-dependent and cultivation-independent methods. Through screening from a metagenomic library, three potentially xylanolytic clones were obtained and sequenced, and reads were assembled into contigs and annotated. The contig MgrBr135 was affiliated with the Planctomycetaceae family and was one of 30 ORFs selected for subcloning that demonstrated only amylase activity. Through the cultivation method, 38 bacterial isolates with xylanolytic activity were isolated. Isolate 11 showed an enzymatic index of 10.9 using the plate assay method. Isolate 39 achieved an enzyme activity of 0.43 U/mL using the colorimetric method with 3,5-dinitrosalicylic acid. Isolate 39 produced xylanase on culture medium with salinity ranging from 1.25 to 5%. Partial 16S rRNA gene sequencing identified isolates in the Bacillus and Paenibacillus genera. The results of this study highlight the importance of mangroves as an enzyme source and show that bacterial groups can be used for starch and hemicellulose degradation.
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Affiliation(s)
- Kelly Jaqueline Alves
- Department of Soil Science, Laboratory of Soil Microbiology, University of Sao Paulo, Padua Dias Avenue, 11 CP 09, Piracicaba, São Paulo, 13418-900, Brazil.
| | - Mylenne Calciolari Pinheiro da Silva
- Department of Soil Science, Laboratory of Soil Microbiology, University of Sao Paulo, Padua Dias Avenue, 11 CP 09, Piracicaba, São Paulo, 13418-900, Brazil
| | - Simone Raposo Cotta
- Center for Nuclear Energy in Agriculture, University of São Paulo, Centenario Avenue, 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Júlia Ronzella Ottoni
- University Center Dinâmica das Cataratas, Castelo Branco Street, 349, Foz do Iguaçu, Paraná, 85852-010, Brazil
| | - Jan Dirk van Elsas
- Microbial Ecology, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh 7, 9747, AG, Groningen, the Netherlands
| | - Valeria Maia de Oliveira
- Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas (UNICAMP), Alexandre Cazellato Avenue, 999, Paulínia, São Paulo, 13140-000, Brazil
| | - Fernando Dini Andreote
- Department of Soil Science, Laboratory of Soil Microbiology, University of Sao Paulo, Padua Dias Avenue, 11 CP 09, Piracicaba, São Paulo, 13418-900, Brazil
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12
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Yoshiyama Y, Shima J, Fushiki T. Problem-Solving Exercise for Undergraduate Students Involving the Japanese Fermented Food Natto. JOURNAL OF MICROBIOLOGY & BIOLOGY EDUCATION 2019; 20:20.1.6. [PMID: 31160925 PMCID: PMC6508896 DOI: 10.1128/jmbe.v20i1.1614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Accepted: 09/11/2018] [Indexed: 06/09/2023]
Abstract
Natto is a traditional Japanese food made from soybeans fermented by Bacillus subtilis natto. Because natto is high in protein and contains healthful bacteria, dieticians and producers have campaigned for higher consumption of natto in areas such as Kansai, where our university is located. One of the reasons for the low consumption of natto is its distinctive flavor. As a problem-solving exercise, undergraduate students attempted to make natto more marketable. Students set a goal of modifying natto flavor by adding spices to achieve flavors deemed palatable by organoleptic tests. During the exercise, they noticed that lemongrass, Cymbopogon citratus, had a flavor-masking ability that reduced the intensity of natto flavor, and they finally determined that it was a useful food additive to make natto marketable. The exercise was an active learning process that effectively induced voluntary student effort of to solve problems originating from microorganisms.
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Affiliation(s)
- Yoko Yoshiyama
- Faculty of Agriculture, Ryukoku University, Shiga 520-2194, Japan
| | - Jun Shima
- Faculty of Agriculture, Ryukoku University, Shiga 520-2194, Japan
| | - Toru Fushiki
- Faculty of Agriculture, Ryukoku University, Shiga 520-2194, Japan
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13
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Zhang Y, Zhang Z, Dai L, Liu Y, Cheng M, Chen L. Isolation and characterization of a novel gossypol-degrading bacteria Bacillus subtilis strain Rumen Bacillus Subtilis. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES 2018; 31:63-70. [PMID: 28728360 PMCID: PMC5756925 DOI: 10.5713/ajas.17.0018] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Revised: 05/15/2017] [Accepted: 06/19/2017] [Indexed: 11/27/2022]
Abstract
OBJECTIVE The aim of the study was to isolate gossypol-degrading bacteria and to assess its potential for gossypol degradation. METHODS Rumen liquid was collected from fistulated cows grazing the experimental pasture. Approximately 1 mL of the rumen liquid was spread onto basal medium plates containing 2 g/L gossypol as the only source of carbon and was then cultured at 39°C to isolate gossypol-degrading bacteria. The isolated colonies were cultured for 6 h and then their size and shape observed by microscope and scanning electron microscope. The 16S rRNA gene of isolated colonies was sequenced and aligned using National Center for Biotechnology Information-Basic Local Alignment Search Tool. The various fermentation conditions, initial pH, incubation temperature, inoculum level and fermentationperiod were analyzed in cottonseed meal (CSM). The crude protein (CP), total gossypol (TG), and free gossypol (FG) were determined in CSM after fermentation with isolated strain at 39°C for 72 h. RESULTS Screening results showed that a single bacterial isolate, named Rumen Bacillus Subtilis (RBS), could use gossypol as a carbon source. The bacterium was identified by 16S rDNA sequencing as being 98% homologous to the sequence of Bacillus subtilis strain GH38. The optimum fermentation conditions were found to be 72 h, 39°C, pH 6.5, moisture 50%, inoculum level 107 cell/g. In the optimum fermentation conditions, the FG and TG content in fermented CSM decreased 78.86% and 49% relative to the control. The content of CP and the essential amino acids of the fermented CSM increased respectively, compared with the control. CONCLUSION The isolation of a gossypol-degrading bacterium from the cow rumen is of great importance for gossypol biodegradation and may be a valuable potential source for gossypol-degradation of CSM.
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Affiliation(s)
- Yunhua Zhang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei 230036, China
| | - Zhengyou Zhang
- College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China
| | - Li Dai
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei 230036, China
| | - Ying Liu
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei 230036, China
| | - Maoji Cheng
- College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China
| | - Lijuan Chen
- College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China
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Perez-Garcia O, Mankelow C, Chandran K, Villas-Boas SG, Singhal N. Modulation of Nitrous Oxide (N 2O) Accumulation by Primary Metabolites in Denitrifying Cultures Adapting to Changes in Environmental C and N. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:13678-13688. [PMID: 29083886 DOI: 10.1021/acs.est.7b03345] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Metabolomics provides insights into the actual physiology of cells rather than their mere "potential", as provided by genomic and transcriptomic analysis. We investigate the modulation of nitrous oxide (N2O) accumulation by intracellular metabolites in denitrifying bacteria using metabolomics and genome-based metabolic network modeling. Profiles of metabolites and their rates of production/consumption were obtained for denitrifying batch cultures under four conditions: initial COD:N ratios of 11:1 and 4:1 with and without nitrite spiking (28 mg-N L-1). Only the nitrite-spiked cultures accumulated N2O. The NO2- spiked cultures with an initial COD:N = 11:1 accumulated 3.3 ± 0.57% of the total nitrogen added as N2O and large pools of tricarboxylic acid cycle intermediates and amino acids. In comparison, the NO2- spiked cultures with COD:N = 4:1 showed significantly higher (p = 0.028) N2O accumulation (8.5.3 ± 0.9% of the total nitrogen added), which was linked to the depletion of C11-C20 fatty acids. Metabolic modeling analysis shows that at COD:N of 4:1 the denitrifying cells slowly generate electron equivalents as FADH2 through β-oxidation of saturated fatty acids, while COD:N of 11:1 do it through the TCA cycle. When combined with NO2- shock, this prolonged the duration over which insufficient electron equivalents were available to completely reduce NOx to N2, resulting in increased N2O accumulation. Results extend the understanding of how organic carbon and nitrite loads modulate N2O accumulation in denitrification, which may contribute to further design strategies to control greenhouse gas emissions from agricultural soils or wastewater treatment systems.
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Affiliation(s)
- Octavio Perez-Garcia
- Department of Civil and Environmental Engineering, University of Auckland , Private Bag 92019, Auckland 1142, New Zealand
| | - Cody Mankelow
- Department of Civil and Environmental Engineering, University of Auckland , Private Bag 92019, Auckland 1142, New Zealand
| | - Kartik Chandran
- Department of Earth and Environmental Engineering, Columbia University , New York, New York 10027, United States
| | - Silas G Villas-Boas
- School of Biological Sciences, University of Auckland , Private Bag 92019, Auckland 1010, New Zealand
| | - Naresh Singhal
- Department of Civil and Environmental Engineering, University of Auckland , Private Bag 92019, Auckland 1142, New Zealand
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Awasthi D, Wang L, Rhee MS, Wang Q, Chauliac D, Ingram LO, Shanmugam KT. Metabolic engineering of
Bacillus subtilis
for production of D‐lactic acid. Biotechnol Bioeng 2017; 115:453-463. [DOI: 10.1002/bit.26472] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Revised: 09/27/2017] [Accepted: 10/05/2017] [Indexed: 01/13/2023]
Affiliation(s)
- Deepika Awasthi
- Department of Microbiology and Cell ScienceUniversity of FloridaGainesvilleFlorida
| | - Liang Wang
- Department of Microbiology and Cell ScienceUniversity of FloridaGainesvilleFlorida
| | - Mun S. Rhee
- Department of Microbiology and Cell ScienceUniversity of FloridaGainesvilleFlorida
| | - Qingzhao Wang
- Department of Microbiology and Cell ScienceUniversity of FloridaGainesvilleFlorida
| | - Diane Chauliac
- Department of Microbiology and Cell ScienceUniversity of FloridaGainesvilleFlorida
| | - Lonnie O. Ingram
- Department of Microbiology and Cell ScienceUniversity of FloridaGainesvilleFlorida
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Abdel-Rahman MA, Sonomoto K. Opportunities to overcome the current limitations and challenges for efficient microbial production of optically pure lactic acid. J Biotechnol 2016; 236:176-92. [DOI: 10.1016/j.jbiotec.2016.08.008] [Citation(s) in RCA: 114] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Accepted: 08/11/2016] [Indexed: 10/21/2022]
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18
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He Y, Mao C, Chen Z, Wen H, Lu W, Wu H. Identification of differential metabolites in liquid diet fermented with Bacillus subtilis using gas chromatography time of flight mass spectrometry. ACTA ACUST UNITED AC 2016; 2:351-356. [PMID: 29767058 PMCID: PMC5941047 DOI: 10.1016/j.aninu.2016.07.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Revised: 07/15/2016] [Accepted: 07/26/2016] [Indexed: 01/01/2023]
Abstract
Growth and health responses of pigs fed fermented liquid diet are not always consistent and causes for this issue are still not very clear. Metabolites produced at different fermentation time points should be one of the most important contributors. However, currently no literatures about differential metabolites of fermented liquid diet are reported. The aim of this experiment was to explore the difference of metabolites in a fermented liquid diet between different fermentation time intervals. A total of eighteen samples that collected from Bacillus subtilis fermented liquid diet on days 7, 21 and 35 respectively were used for the identification of metabolites by gas chromatography time of flight mass spectrometry (GC-TOF-MS). Fifteen differential metabolites including melibiose, sortitol, ribose, cellobiose, maltotriose, sorbose, isomaltose, maltose, fructose, d-glycerol-1-phosphate, 4-aminobutyric acid, beta-alanine, tyrosine, pyruvic acid and pantothenic acid were identified between 7-d samples and 21-d samples. The relative level of melibiose, ribose, maltotriose, d-glycerol-1-phosphate, tyrosine and pyruvic acid in samples collected on day 21 was significantly higher than that in samples collected on day 7 (P < 0.01), respectively. Eight differential metabolites including ribose, sorbose, galactinol, cellobiose, pyruvic acid, galactonic acid, pantothenic acid and guanosine were found between 21-d samples and 35-d samples. Samples collected on day 35 had a higher relative level of ribose than that in samples collected on day 21 (P < 0.01). In conclusion, many differential metabolites which have important effects on the growth and health of pigs are identified and findings contribute to explain the difference in feeding response of fermented liquid diet.
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Affiliation(s)
- Yuyong He
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang 330045, China
| | - Chunxia Mao
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang 330045, China
| | - Zhiyu Chen
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang 330045, China
| | - Hong Wen
- Jiangxi Provincial Institute of Veterinary Drugs and Feed Control, Nanchang 330096, China
| | - Wei Lu
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang 330045, China
| | - Huadong Wu
- College of Animal Science and Technology, Jiangxi Agricultural University, Nanchang 330045, China
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2,3-Butanediol production from cellobiose using exogenous beta-glucosidase-expressing Bacillus subtilis. Appl Microbiol Biotechnol 2016; 100:5781-9. [DOI: 10.1007/s00253-016-7326-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Revised: 01/12/2016] [Accepted: 01/14/2016] [Indexed: 01/04/2023]
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20
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Metabolic potential of Bacillus subtilis 168 for the direct conversion of xylans to fermentation products. Appl Microbiol Biotechnol 2015; 100:1501-1510. [PMID: 26559526 DOI: 10.1007/s00253-015-7124-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Revised: 09/30/2015] [Accepted: 10/20/2015] [Indexed: 10/22/2022]
Abstract
Methylglucuronoxylans (MeGXn) and methylglucuronoarabinoxylans (MeGAXn) respectively comprise most of the hemicellulose fractions in dicots and monocots and, next to cellulose, are the major resources for the production of fuels and chemicals from lignocellulosics. With either MeGXn or MeGAXn as a substrate, Bacillus subtilis 168 accumulates acidic methylglucuronoxylotriose as a limit product following the uptake and metabolism of neutral xylooligosaccharides. Secreted GH11 endoxylanase (Xyn11A), GH30 endoxylanase (Xyn30C), and GH43 arabinoxylan arabinofuranohydrolase (Axh43) respectively encoded by the xynA, xynC, and xynD genes collectively contribute to the depolymerization of MeGAXn. Studies here demonstrate the complementary roles of these enzymes in the digestion of MeGAXn. Coordinate expression of the xynD and xynC genes defines an operon accounting for the Axh43-catalyzed release of arabinose followed by Xyn30C and Xyn11A-catalyzed depolymerization of MeGAXn. Both sources generate acetate and lactate as the principal fermentation products, with yields of 26 % acetate and 32 % lactate from MeGXn compared to 22 % acetate and 21 % lactate from MeGAXn. These studies of the GH43/GH30/GH11 system in B. subtilis 168 provide a basis for the further development of B. subtilis and related species as biocatalysts for direct conversion of hemicellulose derived from energy crops as well as agricultural and forest residues to chemical feedstocks.
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21
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Soo CS, Yap WS, Hon WM, Phang LY. Mini review: hydrogen and ethanol co-production from waste materials via microbial fermentation. World J Microbiol Biotechnol 2015; 31:1475-88. [DOI: 10.1007/s11274-015-1902-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2015] [Accepted: 07/13/2015] [Indexed: 11/30/2022]
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22
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He Y, Chen Z, Liu X, Wang C, Lu W. Influence of trace elements mixture on bacterial diversity and fermentation characteristics of liquid diet fermented with probiotics under air-tight condition. PLoS One 2014; 9:e114218. [PMID: 25486254 PMCID: PMC4259320 DOI: 10.1371/journal.pone.0114218] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2014] [Accepted: 11/05/2014] [Indexed: 12/20/2022] Open
Abstract
Cu2+, Zn2+, Fe2+ and I- are often supplemented to the diet of suckling and early weaning piglets, but little information is available regarding the effects of different Cu2+, Zn2+, Fe2+ and I- mixtures on bacteria growth, diversity and fermentation characteristics of fermented liquid diet for piglets. Pyrosequencing was performed to investigate the effect of Cu2+, Zn2+, Fe2+ and I- mixtures on the diversity, growth and fermentation characteristics of bacteria in the liquid diet fermented with Bacillus subtilis and Enterococcus faecalis under air-tight condition. Results showed that the mixtures of Cu2+, Zn2+, Fe2+ and I- at different concentrations promoted Bacillus growth, increased bacterial diversity and lactic acid production and lowered pH to about 5. The importance of Cu2+, Zn2+, Fe2+ and I- is different for Bacillus growth with the order Zn2+> Fe2+>Cu2+> I- in a 21-d fermentation and Cu2+>I->Fe2+>Zn2+ in a 42-d fermentation. Cu2+, Zn2+, Fe2+ and I- is recommended at a level of 150, 60, 150 and 0.6 mg/kg respectively for the production of fermented liquid diet with Bacillus subtilis. The findings improve our understanding of the influence of trace elements on liquid diet fermentation with probiotics and support the proper use of trace elements in the production of fermented liquid diet for piglets.
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Affiliation(s)
- Yuyong He
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang, People’s Republic of China
| | - Zhiyu Chen
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang, People’s Republic of China
| | - Xiaolan Liu
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang, People’s Republic of China
| | - Chengwei Wang
- College of Life Science, Jiangxi Science & Technology Normal University, Nanchang, People’s Republic of China
| | - Wei Lu
- Jiangxi Province Key Laboratory of Animal Nutrition, Jiangxi Agricultural University, Nanchang, People’s Republic of China
- * E-mail:
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23
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Abdel-Rahman MA, Tashiro Y, Zendo T, Sakai K, Sonomoto K. Enterococcus faecium QU 50: a novel thermophilic lactic acid bacterium for high-yield l-lactic acid production from xylose. FEMS Microbiol Lett 2014; 362:1-7. [DOI: 10.1093/femsle/fnu030] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Bi H, Zhao H, Lu F, Zhang C, Bie X, Lu Z. Improvement of the Nutritional Quality and Fibrinolytic Enzyme Activity of Soybean Meal by Fermentation of B
acillus subtilis. J FOOD PROCESS PRES 2014. [DOI: 10.1111/jfpp.12340] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hua Bi
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing 210095 China
| | - Haizhen Zhao
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing 210095 China
| | - Fengxia Lu
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing 210095 China
| | - Chong Zhang
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing 210095 China
| | - Xiaomei Bie
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing 210095 China
| | - Zhaoxin Lu
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing 210095 China
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25
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Xu K, Xu P. Betaine and beet molasses enhance L-lactic acid production by Bacillus coagulans. PLoS One 2014; 9:e100731. [PMID: 24956474 PMCID: PMC4067348 DOI: 10.1371/journal.pone.0100731] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Accepted: 05/29/2014] [Indexed: 11/17/2022] Open
Abstract
Lactic acid is an important chemical with various industrial applications, and it can be efficiently produced by fermentation, in which Bacillus coagulans strains present excellent performance. Betaine can promote lactic acid fermentation as an effective osmoprotectant. Here, positive effect of betaine on fermentation by B. coagulans is revealed. Betaine could enhance lactic acid production by protecting l-LDH activity and cell growth from osmotic inhibition, especially under high glucose concentrations and with poor organic nitrogen nutrients. The fermentation with 0.05 g/L betaine could produce 17.9% more lactic acid compared to the fermentation without betaine. Beet molasses, which is rich in sucrose and betaine, was utilized in a co-feeding fermentation and raised the productivity by 22%. The efficient lactic acid fermentation by B. coagulans is thus developed by using betaine and beet molasses.
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Affiliation(s)
- Ke Xu
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, People's Republic of China
| | - Ping Xu
- State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, People's Republic of China
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26
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Gao T, Ho KP. l-Lactic acid production by Bacillus subtilis MUR1 in continuous culture. J Biotechnol 2013; 168:646-51. [DOI: 10.1016/j.jbiotec.2013.09.023] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2013] [Revised: 09/03/2013] [Accepted: 09/27/2013] [Indexed: 11/25/2022]
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27
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Liu L, Liu Y, Shin HD, Chen RR, Wang NS, Li J, Du G, Chen J. Developing Bacillus spp. as a cell factory for production of microbial enzymes and industrially important biochemicals in the context of systems and synthetic biology. Appl Microbiol Biotechnol 2013; 97:6113-27. [DOI: 10.1007/s00253-013-4960-4] [Citation(s) in RCA: 91] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Revised: 04/25/2013] [Accepted: 04/27/2013] [Indexed: 01/29/2023]
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28
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Hasunuma T, Okazaki F, Okai N, Hara KY, Ishii J, Kondo A. A review of enzymes and microbes for lignocellulosic biorefinery and the possibility of their application to consolidated bioprocessing technology. BIORESOURCE TECHNOLOGY 2013. [PMID: 23195654 DOI: 10.1016/j.biortech.2012.10.047] [Citation(s) in RCA: 154] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The biorefinery manufacturing process for producing chemicals and liquid fuels from biomass is a promising approach for securing energy and resources. To establish cost-effective fermentation of lignocellulosic biomass, the consolidation of sacccharification and fermentation processes is a desirable strategy, but requires the development of microorganisms capable of cellulose/hemicellulose hydrolysis and target chemical production. Such an endeavor requires a large number of prerequisites to be realized, including engineering microbial strains with high cellulolytic activity, high product yield, productivities, and titers, ability to use many carbon sources, and resistance to toxic compounds released during the pretreatment of lignocellulosic biomass. Researchers have focused on either engineering naturally cellulolytic microorganisms to improve product-related properties or modifying non-cellulolytic organisms with high product yields to become cellulolytic. This article reviews recent advances in the development of microorganisms for the production of renewable chemicals and advanced biofuels, as well as ethanol, from lignocellulosic materials through consolidated bioprocessing.
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Affiliation(s)
- Tomohisa Hasunuma
- Organization of Advanced Science and Technology, Kobe University, 1-1 Rokkodai, Nada, Kobe 657-8501, Japan
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Gao T, Wong Y, Ng C, Ho K. L-lactic acid production by Bacillus subtilis MUR1. BIORESOURCE TECHNOLOGY 2012; 121:105-110. [PMID: 22858473 DOI: 10.1016/j.biortech.2012.06.108] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2012] [Revised: 06/28/2012] [Accepted: 06/29/2012] [Indexed: 06/01/2023]
Abstract
Bacillus subtilis MUR1 is a novel lactic acid (LA) producing strain that has the potential for industrial production of LA due to its high productivity of LA, high yield of substrate conversion, and high final concentration of LA produced. B. subtilis MUR1 can produce 99.3 and 183.2g/l of L-LA in 12 and 52 h respectively with a 98.5% substrate conversion yield and a maximum L-LA production rate of 16.1g/l/h. Compared with batch culture, and several fed-batch cultures with different initial glucose concentrations, the fed-batch culture with initial 30 g/l glucose produced the highest final concentration and productivity of L-LA. Corn steep liquor can be used to partly replace yeast extract in the production medium for the production of L-LA by B. subtilis MUR1.
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Affiliation(s)
- Ting Gao
- Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong SAR, China
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30
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Mu L, Wen J. Engineered Bacillus subtilis 168 produces l-malate by heterologous biosynthesis pathway construction and lactate dehydrogenase deletion. World J Microbiol Biotechnol 2012; 29:33-41. [DOI: 10.1007/s11274-012-1155-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2012] [Accepted: 08/16/2012] [Indexed: 11/29/2022]
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Recent advances in engineering the central carbon metabolism of industrially important bacteria. Microb Cell Fact 2012; 11:50. [PMID: 22545791 PMCID: PMC3461431 DOI: 10.1186/1475-2859-11-50] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2012] [Accepted: 04/30/2012] [Indexed: 01/19/2023] Open
Abstract
This paper gives an overview of the recent advances in engineering the central carbon metabolism of the industrially important bacteria Escherichia coli, Bacillus subtilis, Corynobacterium glutamicum, Streptomyces spp., Lactococcus lactis and other lactic acid bacteria. All of them are established producers of important classes of products, e.g. proteins, amino acids, organic acids, antibiotics, high-value metabolites for the food industry and also, promising producers of a large number of industrially or therapeutically important chemicals. Optimization of existing or introduction of new cellular processes in these microorganisms is often achieved through manipulation of targets that reside at major points of central metabolic pathways, such as glycolysis, gluconeogenesis, the pentose phosphate pathway and the tricarboxylic acid cycle with the glyoxylate shunt. Based on the huge progress made in recent years in biochemical, genetic and regulatory studies, new fascinating engineering approaches aim at ensuring an optimal carbon and energy flow within central metabolism in order to achieve optimized metabolite production.
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Enhanced microbial utilization of recalcitrant cellulose by an ex vivo cellulosome-microbe complex. Appl Environ Microbiol 2011; 78:1437-44. [PMID: 22210210 DOI: 10.1128/aem.07138-11] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
A cellulosome-microbe complex was assembled ex vivo on the surface of Bacillus subtilis displaying a miniscaffoldin that can bind with three dockerin-containing cellulase components: the endoglucanase Cel5, the processive endoglucanase Cel9, and the cellobiohydrolase Cel48. The hydrolysis performances of the synthetic cellulosome bound to living cells, the synthetic cellulosome, a noncomplexed cellulase mixture with the same catalytic components, and a commercial fungal enzyme mixture were investigated on low-accessibility recalcitrant Avicel and high-accessibility regenerated amorphous cellulose (RAC). The cell-bound cellulosome exhibited 4.5- and 2.3-fold-higher hydrolysis ability than cell-free cellulosome on Avicel and RAC, respectively. The cellulosome-microbe synergy was not completely explained by the removal of hydrolysis products from the bulk fermentation broth by free-living cells and appeared to be due to substrate channeling of long-chain hydrolysis products assimilated by the adjacent cells located in the boundary layer. Our results implied that long-chain hydrolysis products in the boundary layer may inhibit cellulosome activity to a greater extent than the short-chain products in bulk phase. The findings that cell-bound cellulosome expedited the microbial cellulose utilization rate by 2.3- to 4.5-fold would help in the development of better consolidated bioprocessing microorganisms (e.g., B. subtilis) that can hydrolyze recalcitrant cellulose rapidly at low secretory cellulase levels.
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Wang Q, Zhao X, Chamu J, Shanmugam KT. Isolation, characterization and evolution of a new thermophilic Bacillus licheniformis for lactic acid production in mineral salts medium. BIORESOURCE TECHNOLOGY 2011; 102:8152-8. [PMID: 21704521 DOI: 10.1016/j.biortech.2011.06.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2011] [Revised: 05/31/2011] [Accepted: 06/01/2011] [Indexed: 05/08/2023]
Abstract
The high fermentation cost of lactic acid is a barrier for polylactic acid (PLA) to compete with the petrochemical derived plastics. In order to lower the cost of lactic acid, the industry needs a microorganism that can ferment various sugars at high temperature (50°C) and at the same time using low cost mineral salts (MS) medium. One such bacterium, BL1, was isolated at 50°C and identified as Bacillus licheniformis. BL1 can ferment glucose to optically pure l-lactate with a maximum specific productivity of 7.8 g/hl in LB medium and 0.7 g/hl in MS medium at 50°C. BL1 can also consume 10% and 15% glucose in 20 and 48 h, respectively. After serial transfer of BL1 and BL2 in different concentrations of xylose and MS medium respectively, the final mutant BL3 could efficiently ferment glucose and xylose with specific productivity of 1.9 g/hl and 1.2g/hl in strict MS medium.
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Affiliation(s)
- Qingzhao Wang
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, People's Republic of China.
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Berger E, Crampton MC, Nxumalo NP, Louw ME. Extracellular secretion of a recombinant therapeutic peptide by Bacillus halodurans utilizing a modified flagellin type III secretion system. Microb Cell Fact 2011; 10:62. [PMID: 21813023 PMCID: PMC3160875 DOI: 10.1186/1475-2859-10-62] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2011] [Accepted: 08/04/2011] [Indexed: 12/04/2022] Open
Abstract
Background Through modification of the flagellin type III secretion pathway of Bacillus halodurans heterologous peptides could be secreted into the medium as flagellin fusion monomers. The stability of the secreted monomers was significantly enhanced through gene-targeted inactivation of host cell extracellular proteases. In evaluating the biotechnological potential of this extracellular secretion system an anti-viral therapeutic peptide, Enfuvirtide, was chosen. Currently, Enfuvirtide is synthesised utilizing 106 chemical steps. We used Enfuvirtide as a model system in an effort to develop a more cost-effective biological process for therapeutic peptide production. Results An attempt was made to increase the levels of the fusion peptide by two strategies, namely strain improvement through gene-targeted knock-outs, as well as vector and cassette optimization. Both approaches proved to be successful. Through chromosomal inactivation of the spo0A, lytC and lytE genes, giving rise to strain B. halodurans BhFDL05S, the secretion of recombinant peptide fusions was increased 10-fold. Cassette optimization, incorporating an expression vector pNW33N and the N- and C-terminal regions of the flagellin monomer as an in-frame peptide fusion, resulted in a further 3.5-fold increase in the secretion of recombinant peptide fusions. Conclusions The type III flagellar secretion system of B. halodurans has been shown to successfully secrete a therapeutic peptide as a heterologous flagellin fusion. Improvements to both the strain and expression cassette led to increased levels of recombinant peptide, showing promise for a biotechnological application.
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Affiliation(s)
- Eldie Berger
- CSIR Biosciences, Box 395, Pretoria 0001, South Africa
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Zhang XZ, Sathitsuksanoh N, Zhu Z, Percival Zhang YH. One-step production of lactate from cellulose as the sole carbon source without any other organic nutrient by recombinant cellulolytic Bacillus subtilis. Metab Eng 2011; 13:364-72. [PMID: 21549854 DOI: 10.1016/j.ymben.2011.04.003] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2010] [Revised: 04/09/2011] [Accepted: 04/25/2011] [Indexed: 10/18/2022]
Abstract
Although intensive efforts have been made to create recombinant cellulolytic microorganisms, real recombinant cellulose-utilizing microorganisms that can produce sufficient secretory active cellulase, hydrolyze cellulose, and utilize released soluble sugars for supporting both cell growth and cellulase synthesis without any other organic nutrient (e.g., yeast extract, peptone, amino acids), are not available. Here we demonstrated that over-expression of Bacillus subtilis endoglucanase BsCel5 enabled B. subtilis to grow on solid cellulosic materials as the sole carbon source for the first time. Furthermore, two-round directed evolution was conducted to increase specific activity of BsCel5 on regenerated amorphous cellulose (RAC) and enhance its expression/secretion level in B. subtilis. To increase lactate yield, the alpha-acetolactate synthase gene (alsS) in the 2,3-butanediol pathway was knocked out. In the chemically defined minimal M9/RAC medium, B. subtilis XZ7(pBscel5-MT2C) strain (ΔalsS), which expressed a BsCel5 mutant MT2C, was able to hydrolyze RAC with cellulose digestibility of 74% and produced about 3.1g/L lactate with a yield of 60% of the theoretical maximum. When 0.1% (w/v) yeast extract was added in the M9/RAC medium, cellulose digestibility and lactate yield were enhanced to 92% and 63% of the theoretical maximum, respectively. The recombinant industrially safe cellulolytic B. subtilis would be a promising consolidated bioprocessing platform for low-cost production of biocommodities from cellulosic materials.
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Affiliation(s)
- Xiao-Zhou Zhang
- Department of Biological Systems Engineering, Virginia Tech, Blacksburg, VA 24061, USA
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Li S, Wen J, Jia X. Engineering Bacillus subtilis for isobutanol production by heterologous Ehrlich pathway construction and the biosynthetic 2-ketoisovalerate precursor pathway overexpression. Appl Microbiol Biotechnol 2011; 91:577-89. [PMID: 21533914 DOI: 10.1007/s00253-011-3280-9] [Citation(s) in RCA: 87] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2011] [Revised: 03/24/2011] [Accepted: 03/26/2011] [Indexed: 12/14/2022]
Abstract
In the present work, Bacillus subtilis was engineered as the cell factory for isobutanol production due to its high tolerance to isobutanol. Initially, an efficient heterologous Ehrlich pathway controlled by the promoter P(43) was introduced into B. subtilis for the isobutanol biosynthesis. Further, investigation of acetolactate synthase of B. subtilis, ketol-acid reductoisomerase, and dihydroxy-acid dehydratase of Corynebacterium glutamicum responsible for 2-ketoisovalerate precursor biosynthesis showed that acetolactate synthase played an important role in isobutanol biosynthesis. The overexpression of acetolactate synthase led to a 2.8-fold isobutanol production compared with the control. Apart from isobutanol, alcoholic profile analysis also confirmed the existence of 1.21 g/L ethanol, 1.06 g/L 2-phenylethanol, as well as traces of 2-methyl-1-butanol and 3-methyl-1-butanol in the fermentation broth. Under microaerobic condition, the engineered B. subtilis produced up to 2.62 g/L isobutanol in shake-flask fed-batch fermentation, which was 21.3% higher than that in batch fermentation.
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Affiliation(s)
- Shanshan Li
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
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Verhulst NO, Andriessen R, Groenhagen U, Bukovinszkiné Kiss G, Schulz S, Takken W, van Loon JJA, Schraa G, Smallegange RC. Differential attraction of malaria mosquitoes to volatile blends produced by human skin bacteria. PLoS One 2010; 5:e15829. [PMID: 21209854 PMCID: PMC3012726 DOI: 10.1371/journal.pone.0015829] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2010] [Accepted: 11/26/2010] [Indexed: 02/08/2023] Open
Abstract
The malaria mosquito Anopheles gambiae sensu stricto is mainly guided by human odour components to find its blood host. Skin bacteria play an important role in the production of human body odour and when grown in vitro, skin bacteria produce volatiles that are attractive to A. gambiae. The role of single skin bacterial species in the production of volatiles that mediate the host-seeking behaviour of mosquitoes has remained largely unknown and is the subject of the present study. Headspace samples were taken to identify volatiles that mediate this behaviour. These volatiles could be used as mosquito attractants or repellents. Five commonly occurring species of skin bacteria were tested in an olfactometer for the production of volatiles that attract A. gambiae. Odour blends produced by some bacterial species were more attractive than blends produced by other species. In contrast to odours from the other bacterial species tested, odours produced by Pseudomonas aeruginosa were not attractive to A. gambiae. Headspace analysis of bacterial volatiles in combination with behavioural assays led to the identification of six compounds that elicited a behavioural effect in A. gambiae. Our results provide, to our knowledge, the first evidence for a role of selected bacterial species, common on the human skin, in determining the attractiveness of humans to malaria mosquitoes. This information will be used in the further development of a blend of semiochemicals for the manipulation of mosquito behaviour.
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Affiliation(s)
- Niels O Verhulst
- Laboratory of Entomology, Wageningen University and Research Centre, Wageningen, The Netherlands.
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Abdel-Rahman MA, Tashiro Y, Zendo T, Shibata K, Sonomoto K. Isolation and characterisation of lactic acid bacterium for effective fermentation of cellobiose into optically pure homo l-(+)-lactic acid. Appl Microbiol Biotechnol 2010; 89:1039-49. [DOI: 10.1007/s00253-010-2986-4] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2010] [Revised: 10/25/2010] [Accepted: 10/25/2010] [Indexed: 11/25/2022]
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