1
|
Laghouaouta H, Laplana M, Ros-Freixedes R, Fraile LJ, Pena RN. Sequence variants associated with resilient responses in growing pigs. J Anim Breed Genet 2024. [PMID: 38967062 DOI: 10.1111/jbg.12886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 05/23/2024] [Accepted: 06/18/2024] [Indexed: 07/06/2024]
Abstract
The current work aimed to identify genomic regions and candidate genes associated with resilience in pigs. In previous work, we proposed the body weight deviation from the expected growth curve (ΔBW) and the increase of the positive acute-phase protein haptoglobin (ΔHP) after a vaccine challenge as resilience indicators which may be improved through selective breeding in pigs. Individuals with steady growth rate and minor activation of haptoglobin (high ΔBW and low ΔHP values) were considered resilient. In contrast, pigs with perturbed growth rate and high activation of haptoglobin (low ΔBW and high ΔHP values) were considered susceptible. Both ∆BW and ∆HP were simultaneously considered to select the most resilient (N = 40) and susceptible (N = 40) pigs. A genome-wide association study was carried out for the pigs' response classification to the challenge test using whole-genome sequence data (7,760,720 variants). Eleven associated genomic regions were identified, harbouring relevant candidate genes related to the immune response (such as pro- and anti-inflammatory responses) and growth pathways. These associated genomic regions harboured 41 potential functional mutations (frameshift, splice donor, splice acceptor, start loss and stop loss/gain) in candidate genes. Overall, this study advances our knowledge about the genetic determinism of resilience, highlighting its polygenic nature and strong relationship with immunity and growth.
Collapse
Affiliation(s)
- Houda Laghouaouta
- Department of Animal Science, University of Lleida-Agrotecnio-CERCA Center, Lleida, Spain
| | - Marina Laplana
- Department of Animal Science, University of Lleida-Agrotecnio-CERCA Center, Lleida, Spain
| | - Roger Ros-Freixedes
- Department of Animal Science, University of Lleida-Agrotecnio-CERCA Center, Lleida, Spain
| | - Lorenzo J Fraile
- Department of Animal Science, University of Lleida-Agrotecnio-CERCA Center, Lleida, Spain
| | - Ramona N Pena
- Department of Animal Science, University of Lleida-Agrotecnio-CERCA Center, Lleida, Spain
| |
Collapse
|
2
|
Miyumo S, Wasike CB, Ilatsia ED, Bennewitz J, Chagunda MGG. Evaluation of selection strategies in dual-purpose and specialized breeding of indigenous chicken. Poult Sci 2024; 103:103916. [PMID: 38908120 DOI: 10.1016/j.psj.2024.103916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 05/12/2024] [Accepted: 05/24/2024] [Indexed: 06/24/2024] Open
Abstract
This study aimed to evaluate various selection strategies for adoption in dual-purpose (ICD), meat (ICM) and layer (ICL) breeding goals in indigenous chicken breeding programs. The ICM goal aimed to improve live weight (LW12), daily gain (ADG) and egg weight (EW12) or together with feed efficiency and antibody response. For the ICL goal, age at first egg (AFE) and egg number (EN12) or together with feed efficiency and antibody response were targeted. In the ICD goal, the objective was to improve LW12, ADG, AFE and EN12 or together with feed efficiency and antibody response. Highest total index responses of US$ 49.83, US$ 65.71, and US$ 37.90 were estimated in indices targeting only production traits in the ICD, ICM and ICL goals, respectively. Highest index accuracy estimates of 0.77 and 0.70 were observed in indices that considered production and feed-related traits in the ICD and ICL goals, respectively, while in the ICM goal, the highest estimate of 0.96 was observed in an index targeting only production traits. Inbreeding levels ranged from 0.60 to 1.14% across the various indices considered in the breeding goals. Targeting only production traits in the ICD, ICM and ICL goals required the least number of generations of selection of 7.46, 5.50, and 8.52, respectively, to achieve predefined gains. Generally, a strategy targeting only production traits in a goal was the most optimal but resulted to unfavorable correlated responses in feed efficiency and antibody response. Addition of feed efficiency or/and antibody response in a goal was, however, not attractive due to the decline in total index response and accuracy and increase in inbreeding levels and number of generations of selection. Considering the feed availability and disease challenges in the tropics, choice of including feed efficiency or/and antibody response in the ICD, ICM and ICL goals should depend on targeted production system, resource availability to support breeding activities and magnitude of correlated responses on these traits when not included in the goals.
Collapse
Affiliation(s)
- Sophie Miyumo
- Department of Animal Breeding and Husbandry in the Tropics and Sub-tropics, University of Hohenheim, Stuttgart 70599, Germany.
| | - Chrilukovian B Wasike
- Livestock Efficiency Enhancement group (LEEG), Department of Animal and Fisheries Sciences, Maseno University, Maseno, Kenya
| | - Evans D Ilatsia
- Kenya Agricultural and Livestock Research Organization, Poultry Research Program, Naivasha 20117, Kenya
| | - Jörn Bennewitz
- Department of Animal Breeding and Genetics, University of Hohenheim, Stuttgart 70599, Germany
| | - Mizeck G G Chagunda
- Department of Animal Breeding and Husbandry in the Tropics and Sub-tropics, University of Hohenheim, Stuttgart 70599, Germany
| |
Collapse
|
3
|
Lecoeur A, Blanc F, Gourichon D, Bruneau N, Burlot T, Pinard-van der Laan MH, Calenge F. Host genetics drives differences in cecal microbiota composition and immune traits of laying hens raised in the same environment. Poult Sci 2024; 103:103609. [PMID: 38547541 PMCID: PMC11000118 DOI: 10.1016/j.psj.2024.103609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/12/2024] [Accepted: 02/28/2024] [Indexed: 04/11/2024] Open
Abstract
Vaccination is one of the most effective strategies for preventing infectious diseases but individual vaccine responses are highly heterogeneous. Host genetics and gut microbiota composition are 2 likely drivers of this heterogeneity. We studied 94 animals belonging to 4 lines of laying hens: a White Leghorn experimental line genetically selected for a high antibody response against the Newcastle Disease Virus (NDV) vaccine (ND3) and its unselected control line (CTR), and 2 commercial lines (White Leghorn [LEG] and Rhode Island Red [RIR]). Animals were reared in the same conditions from hatching to 42 d of age, and animals from different genetic lines were mixed. Animals were vaccinated at 22 d of age and their humoral vaccine response against NDV was assessed by hemagglutination inhibition assay and ELISA from blood samples collected at 15, 19, and 21 d after vaccination. The immune parameters studied were the 3 immunoglobulins subtypes A, M, and Y and the blood cell composition was assessed by flow cytometry. The composition of the cecal microbiota was assessed at the end of the experiment by analyzing amplified 16S rRNA gene sequences to obtain amplicon sequence variants (ASV). The 4 lines showed significantly different levels of NDV vaccine response at the 3 measured points, with, logically, a higher response of the genetically selected ND3 line, and intermediate and low responses for the unselected CTR control line and for the 2 commercial lines, respectively. The ND3 line displayed also a higher proportion of immunoglobulins (IgA, IgM, and IgY). The RIR line showed the most different blood cell composition. The 4 lines showed significantly different microbiota characteristics: composition, abundances at all taxonomic levels, and correlations between genera and vaccine response. The tested genetic lines differ for immune parameters and gut microbiota composition and functions. These phenotypic differences can be attributed to genetic differences between lines. Causal relationships between both types of parameters are discussed and will be investigated in further studies.
Collapse
Affiliation(s)
- Alexandre Lecoeur
- Université Paris-Saclay, INRAE, AgroParisTech, Jouy-en-Josas 78350, France.
| | - Fany Blanc
- Université Paris-Saclay, INRAE, AgroParisTech, Jouy-en-Josas 78350, France
| | | | - Nicolas Bruneau
- Université Paris-Saclay, INRAE, AgroParisTech, Jouy-en-Josas 78350, France
| | | | | | - Fanny Calenge
- Université Paris-Saclay, INRAE, AgroParisTech, Jouy-en-Josas 78350, France
| |
Collapse
|
4
|
Bernard M, Lecoeur A, Coville JL, Bruneau N, Jardet D, Lagarrigue S, Meynadier A, Calenge F, Pascal G, Zerjal T. Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions. Sci Rep 2024; 14:8210. [PMID: 38589474 PMCID: PMC11001975 DOI: 10.1038/s41598-024-58374-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 03/28/2024] [Indexed: 04/10/2024] Open
Abstract
The gut microbiota is known to play an important role in energy harvest and is likely to affect feed efficiency. In this study, we used 16S metabarcoding sequencing to analyse the caecal microbiota of laying hens from feed-efficient and non-efficient lines obtained by divergent selection for residual feed intake. The two lines were fed either a commercial wheat-soybean based diet (CTR) or a low-energy, high-fibre corn-sunflower diet (LE). The analysis revealed a significant line x diet interaction, highlighting distinct differences in microbial community composition between the two lines when hens were fed the CTR diet, and more muted differences when hens were fed the LE diet. Our results are consistent with the hypothesis that a richer and more diverse microbiota may play a role in enhancing feed efficiency, albeit in a diet-dependent manner. The taxonomic differences observed in the microbial composition seem to correlate with alterations in starch and fibre digestion as well as in the production of short-chain fatty acids. As a result, we hypothesise that efficient hens are able to optimise nutrient absorption through the activity of fibrolytic bacteria such as Alistipes or Anaerosporobacter, which, via their production of propionate, influence various aspects of host metabolism.
Collapse
Affiliation(s)
- Maria Bernard
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
- INRAE, SIGENAE, 78350, Jouy-en-Josas, France.
| | - Alexandre Lecoeur
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France
| | - Jean-Luc Coville
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France
| | - Nicolas Bruneau
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France
| | - Deborah Jardet
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France
| | | | - Annabelle Meynadier
- GenPhySE, Université de Toulouse, INRAE, ENVT, 31326, Castanet-Tolosan, France
| | - Fanny Calenge
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France
| | - Géraldine Pascal
- GenPhySE, Université de Toulouse, INRAE, ENVT, 31326, Castanet-Tolosan, France
| | - Tatiana Zerjal
- INRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
| |
Collapse
|
5
|
Ducrot C, Barrio MB, Boissy A, Charrier F, Even S, Mormède P, Petit S, Pinard-van der Laan MH, Schelcher F, Casabianca F, Ducos A, Foucras G, Guatteo R, Peyraud JL, Vayssier-Taussat M, Veysset P, Friggens NC, Fernandez X. Animal board invited review: Improving animal health and welfare in the transition of livestock farming systems: Towards social acceptability and sustainability. Animal 2024; 18:101100. [PMID: 38452419 DOI: 10.1016/j.animal.2024.101100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 01/24/2024] [Accepted: 01/25/2024] [Indexed: 03/09/2024] Open
Abstract
The need to integrate more clearly societal expectations on livestock farming has led the authors of this article to consider that livestock farming systems must be redesigned to position health and welfare at the heart of their objectives. This article proposes a vision of the advances in knowledge required at different scales to contribute to this transformation. After defining health and welfare of animals, the article emphasises the need to consider health in a broader perspective, to deepen the question of positive emotional experiences regarding welfare, and raises the question of how to assess these two elements on farms. The positive interactions between health and welfare are presented. Some possible tensions between them are also discussed, in particular when improving welfare by providing a more stimulating and richer environment such as access to outdoor increases the risk of infectious diseases. Jointly improving health and welfare of animals poses a number of questions at various scales, from the animal level to the production chain. At the animal level, the authors highlight the need to explore: the long-term links between better welfare and physiological balance, the role of microbiota, the psycho-neuro-endocrine mechanisms linking positive mental state and health, and the trade-off between the physiological functions of production, reproduction and immunity. At the farm level, in addition to studying the relationships at the group level between welfare, health and production, the paper supports the idea of co-constructing innovative systems with livestock farmers, as well as analysing the cost, acceptability and impact of improved systems on their working conditions and well-being. At the production chain or territory levels, various questions are raised. These include studying the best strategies to improve animal health and welfare while preserving economic viability, the labelling of products and the consumers' willingness to pay, the consequences of heterogeneity in animal traits on the processing of animal products, and the spatial distribution of livestock farming and the organisation of the production and value chain. At the level of the citizen and consumer, one of the challenges is to better inter-relate sanitary and health perspectives on the one hand, and welfare concerns on the other hand. There is also a need to improve citizens' knowledge on livestock farming, and to develop more intense and constructive exchanges between livestock farmers, the livestock industry and citizens. These difficult issues plead for interdisciplinary and transdisciplinary research involving various scientific disciplines and the different stakeholders, including public policy makers through participatory research.
Collapse
Affiliation(s)
- C Ducrot
- ASTRE, Univ Montpellier, INRAE, CIRAD, Campus international de Baillarguet, 34980 Montferrier sur Lez, France.
| | - M B Barrio
- Département Santé animale, INRAE, 31326 Castanet-Tolosan, France
| | - A Boissy
- Herbivores, Université Clermont Auvergne, INRAE, VetAgro Sup, 63122 Saint-Genès-Champanelle, France
| | - F Charrier
- LISIS, Université Paris-Est Marne-la-Vallée, INRAE, 77454 Marne-la-Vallée, France
| | - S Even
- STLO, INRAE, Institut Agro, 35042 Rennes, France
| | - P Mormède
- Département de Génétique animale, INRAE, 31326 Castanet-Tolosan, France
| | - S Petit
- CESAER, INRAE, Institut Agro, Univ. Bourgogne-Franche-Comté, 21000 Dijon, France
| | | | - F Schelcher
- IHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France
| | | | - A Ducos
- GENPHYSE, Université de Toulouse, INRAE, ENVT, Toulouse, France
| | - G Foucras
- IHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France
| | - R Guatteo
- BIOEPAR, Oniris, INRAE, 44300 Nantes, France
| | - J-L Peyraud
- PEGASE, INRAE, Institut Agro Rennes, 35590 St Gilles, France
| | | | - P Veysset
- Herbivores, Université Clermont Auvergne, INRAE, VetAgro Sup, 63122 Saint-Genès-Champanelle, France
| | - N C Friggens
- Modélisation Systémique Appliquée aux Ruminants, Université Paris-Saclay, INRAE, AgroParisTech, 91120 Palaiseau, France
| | | |
Collapse
|
6
|
Strillacci MG, Punturiero C, Milanesi R, Bernini F, Mason T, Bagnato A. Antibiotic treatments and somatic cell count as phenotype to map QTL for mastitis susceptibility in Holstein cattle breed. ITALIAN JOURNAL OF ANIMAL SCIENCE 2023. [DOI: 10.1080/1828051x.2023.2175498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Affiliation(s)
| | - Chiara Punturiero
- Department of Veterinary Medicine and Animal Science, Università degli Studi di Milano, Lodi, Italy
| | - Raffaella Milanesi
- Department of Veterinary Medicine and Animal Science, Università degli Studi di Milano, Lodi, Italy
| | - Francesca Bernini
- Department of Veterinary Medicine and Animal Science, Università degli Studi di Milano, Lodi, Italy
| | - Tiziano Mason
- Department of Veterinary Medicine and Animal Science, Università degli Studi di Milano, Lodi, Italy
| | - Alessandro Bagnato
- Department of Veterinary Medicine and Animal Science, Università degli Studi di Milano, Lodi, Italy
| |
Collapse
|
7
|
Pesti GM, Choct M. The future of feed formulation for poultry: Toward more sustainable production of meat and eggs. ANIMAL NUTRITION (ZHONGGUO XU MU SHOU YI XUE HUI) 2023; 15:71-87. [PMID: 37799133 PMCID: PMC10550521 DOI: 10.1016/j.aninu.2023.02.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 01/24/2023] [Accepted: 02/05/2023] [Indexed: 10/07/2023]
Abstract
Current methods for feed formulation are based on minimizing costs, not maximizing profits. Complex models of bird growth and reproduction as functions of genetic, feed and other environmental variables are being developed, but their adaptation has been slow. The development of profit maximizing models will evolve to center on the production functions of broilers and layers. The production functions are the relationship between the value of products (mainly meat and eggs) and the cost of feed. The production function is the tool used to maximize profits subject to all the various inputs, not just feed or nutrition. The production function is subject to the law of diminishing returns. The most profitable output levels are those where the marginal value (price) of the meat or eggs is just equal to the marginal cost of the inputs including feed, housing, processing and all other costs. Anything that affects the production function, bird genetics, feed quality, housing and environment, will be considered to maximize profits for the poultry firm. The profit maximizing models of poultry firms will improve as various technical improvements are made: metabolizable energy to describe ingredients will evolve to net energy systems that consider that the heat production (and therefore energetic efficiency) of broilers is different depending on the ingredients used to formulate the feed and the environmental temperatures under which they are reared. Amino acid needs will include a method to find the birds' needs for the non-essential amino acids. "Digestible" amino acid assays will differentiate between digestion and absorption to best balance various sources. The carbohydrate fractions of feed ingredients will be determined to optimize the use of exogenous enzymes. The value of meat and egg co-products will reduce overall costs (e.g., organic fertilizer for crop enhancement). Future profit maximizing production models will be ever evolving processes where field conditions and results are continually being utilized to re-calibrate the technical models so that the management team can use them with cost and return projections to decide on the best choices of inputs and outputs.
Collapse
Affiliation(s)
- Gene M. Pesti
- Poultry Hub Australia, Armidale, NSW 2351, Australia
- The University of Georgia, Athens, GA 30602, USA
| | - Mingan Choct
- The University of New England, Armidale, NSW 2351, Australia
| |
Collapse
|
8
|
Guarnido-Lopez P, Ortigues-Marty I, David J, Polakof S, Cantalapiedra-Hijar G. Comparative analysis of signalling pathways in tissue protein metabolism in efficient and non-efficient beef cattle: acute response to an identical single meal size. Animal 2023; 17:101017. [PMID: 37948891 DOI: 10.1016/j.animal.2023.101017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 10/09/2023] [Accepted: 10/10/2023] [Indexed: 11/12/2023] Open
Abstract
Protein turnover has been associated to residual feed intake (RFI) in beef cattle. However, this relationship may be confounded by feeding level and affected by the composition of the diet being fed. Our aim was to assess postmortem the protein metabolism signalling pathways in skeletal muscle and liver of 32 Charolais young bulls with extreme RFI phenotypes. Bulls were fed two contrasting diets during the whole fattening period but were subjected to a similar and single nutritional stimulus, induced by their respective concentrate, just prior to slaughter. The key targets were protein degradation (autophagy and ubiquitin) and synthesis signalling pathways through western-blot analysis, as well as hepatic transaminase activity. To ensure a precise assessment of all animals at the same postprandial time, they were provided with a test meal (2.5 kg of either a high-starch and high-protein concentrate or high-fibre and low-protein concentrate) 3 hours prior to slaughter, irrespective of their RFI grouping. Blood and tissues were sampled at the slaughterhouse (3 h and 3 h30 postprandially, respectively). In response to an identical single meal size, efficient RFI animals showed higher (P < 0.05) postprandial plasma β-hydroxybutyrate concentrations and insulinemia (only with the high-starch concentrate) than non-efficient animals. Moreover, efficient RFI bulls had lower muscle (P = 0.04) and liver (P = 0.08) ubiquitin protein abundance (degradation pathway) and tended to have lower alanine transaminase activity in the liver (P = 0.06) compared to non-efficient bulls, regardless of diet. A positive correlation between protein degradation potential and amino acid catabolism was identified in this study (r = 0.52, P = 0.004), which was interpreted as being biologically linked to the RFI phenotype. Efficient RFI bulls also had a faster potential for protein synthesis in the muscle, as indicated by their greater ratio of phosphorylated to total form of ribosomal protein S6 kinase (P = 0.05), regardless of diet. Results on protein synthesis pathway in muscle and plasma metabolite concentrations suggested that efficient RFI cattle may have a faster nutrient absorption and insulin responsiveness after feeding than inefficient cattle. We did not find significant differences in hepatic protein synthesis pathways between the two RFI groups (P > 0.05). Our findings suggest that, in response to an identical single meal size, efficient RFI animals exhibited lower activation of tissue protein degradation pathways and faster muscle protein synthesis activation compared to their inefficient counterparts. This pattern was observed regardless of the composition of the tested meals.
Collapse
Affiliation(s)
- P Guarnido-Lopez
- INRAE, VetAgro Sup, UMR Herbivores, Université Clermont Auvergne, F-63122 Saint-Genès-Champanelle, France
| | - I Ortigues-Marty
- INRAE, VetAgro Sup, UMR Herbivores, Université Clermont Auvergne, F-63122 Saint-Genès-Champanelle, France
| | - J David
- Université Clermont-Auvergne, INRAE, UMR1019, Unité Nutrition Humaine, Clermont-Ferrand, France
| | - S Polakof
- Université Clermont-Auvergne, INRAE, UMR1019, Unité Nutrition Humaine, Clermont-Ferrand, France
| | - G Cantalapiedra-Hijar
- INRAE, VetAgro Sup, UMR Herbivores, Université Clermont Auvergne, F-63122 Saint-Genès-Champanelle, France.
| |
Collapse
|
9
|
Campos PM, Schreier LL, Proszkowiec-Weglarz M, Dridi S. Cecal microbiota composition differs under normal and high ambient temperatures in genetically distinct chicken lines. Sci Rep 2023; 13:16037. [PMID: 37749169 PMCID: PMC10519933 DOI: 10.1038/s41598-023-43123-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 09/20/2023] [Indexed: 09/27/2023] Open
Abstract
Modern broilers, selected for high growth rate, are more susceptible to heat stress (HS) as compared to their ancestral jungle fowl (JF). HS affects epithelia barrier integrity, which is associated with gut microbiota. The aim of this study was to determine the effect of HS on the cecal luminal (CeL) and cecal mucosal (CeM) microbiota in JF and three broiler populations: Athens Canadian Random Bred (ACRB), 1995 Random Bred (L1995), and Modern Random Bred (L2015). Broiler chicks were subjected to thermoneutral TN (24 °C) or chronic cyclic HS (8 h/day, 36 °C) condition from day 29 until day 56. HS affected richness in CeL microbiota in a line-dependent manner, decreasing richness in slow-growing JF and ACRB lines, while increasing richness in faster-growing L1995 and L2015. Microbiota were distinct between HS and TN conditions in CeL microbiota of all four lines and in CeM microbiota of L2015. Certain bacterial genera were also affected in a line-dependent manner, with HS tending to increase relative abundance in CeL microbiota of slow-growing lines, while decreases were common in fast-growing lines. Predictive functional analysis suggested a greater impact of HS on metabolic pathways in L2015 compared to other lines.
Collapse
Affiliation(s)
- Philip M Campos
- USDA-ARS Research Participation Program, Oak Ridge Institute for Science and Education (ORISE), 1299 Bethel Valley Rd, Oak Ridge, TN, 37830, USA
- USDA-ARS, NEA, Beltsville Agricultural Research Center, Animal Biosciences and Biotechnology Laboratory, 10300 Baltimore Avenue, Bldg. 307, BARC-East, Beltsville, MD, 20705, USA
- USDA-ARS, NEA Bioinformatics, Statistics Group, 10300 Baltimore Ave, Bldg. 003, Rooms 229E, 330, 331; BARC-West, Beltsville, MD, 20705, USA
| | - Lori L Schreier
- USDA-ARS, NEA, Beltsville Agricultural Research Center, Animal Biosciences and Biotechnology Laboratory, 10300 Baltimore Avenue, Bldg. 307, Room 304, BARC-East, Beltsville, MD, 20705, USA
| | - Monika Proszkowiec-Weglarz
- USDA-ARS, NEA, Beltsville Agricultural Research Center, Animal Biosciences and Biotechnology Laboratory, 10300 Baltimore Avenue, Bldg. 307, Room 335, BARC-East, Beltsville, MD, 20705, USA.
| | - Sami Dridi
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA
| |
Collapse
|
10
|
Schmidt CJ, Kim DK, Pendarvis GK, Abasht B, McCarthy FM. Proteomic insight into human directed selection of the domesticated chicken Gallus gallus. PLoS One 2023; 18:e0289648. [PMID: 37549140 PMCID: PMC10406324 DOI: 10.1371/journal.pone.0289648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 07/21/2023] [Indexed: 08/09/2023] Open
Abstract
Chicken domestication began at least 3,500 years ago for purposes of divination, cockfighting, and food. Prior to industrial scale chicken production, domestication selected larger birds with increased egg production. In the mid-20th century companies began intensive selection with the broiler (meat) industry focusing on improved feed conversion, rapid growth, and breast muscle yield. Here we present proteomic analysis comparing the modern broiler line, Ross 708, with the UIUC legacy line which is not selected for growth traits. Breast muscle proteome analysis identifies cellular processes that have responded to human directed artificial selection. Mass spectrometry was used to identify protein level differences in the breast muscle of 6-day old chicks from Modern and Legacy lines. Our results indicate elevated levels of stress proteins, ribosomal proteins and proteins that participate in the innate immune pathway in the Modern chickens. Furthermore, the comparative analyses indicated expression differences for proteins involved in multiple biochemical pathways. In particular, the Modern line had elevated levels of proteins affecting the pentose phosphate pathway, TCA cycle and fatty acid oxidation while proteins involved in the first phase of glycolysis were reduced compared to the Legacy line. These analyses provide hypotheses linking the morphometric changes driven by human directed selection to biochemical pathways. These results also have implications for the poultry industry, specifically Wooden Breast disease which is linked to rapid breast muscle growth.
Collapse
Affiliation(s)
- Carl J. Schmidt
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware, United States of America
| | - Dong Kyun Kim
- Center for Innovation in Brain Sciences, University of Arizona, Tucson, Arizona, United States of America
| | - G Ken Pendarvis
- School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona, United States of America
| | - Behnam Abasht
- Department of Animal and Food Sciences, University of Delaware, Newark, Delaware, United States of America
| | - Fiona M. McCarthy
- School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona, United States of America
| |
Collapse
|
11
|
Furtado AP, Carvalho ITS, Lewis EL, Bleke CA, Pantoja DL, Colli GR, French SS, Paludo GR. Short-term impact of a wildfire on the homeostasis of Tropidurus oreadicus lizards. JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2023; 339:423-436. [PMID: 36773015 DOI: 10.1002/jez.2687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 01/24/2023] [Accepted: 01/27/2023] [Indexed: 02/12/2023]
Abstract
Wildfires cause significant changes in natural habitats and can impact lizard populations. Through changes in the thermal environment, reduced prey availability, and increased exposure to parasite vectors, wildfires affect lizard physiology, immunity, and health. We sampled 56 Tropidurus oreadicus lizards from Cerrado savannas of Brazil living in two adjacent sites: one burned 14 days before the study, and the other unburned for 6 years. We logged the air temperatures of those sites throughout fieldwork. We assessed the short-term possible homeostatic imbalances caused by the fires via measuring body mass, circulating levels of corticosterone (CORT), leukocytes profile changes in heterophile-lymphocyte ratios (HLRs), innate immunity using the bacterial killing assay (BKA), and the diagnosis of hemoparasites using molecular techniques. The air temperature was significantly higher in the burned site. There was no difference in lizard body mass between the two sites, suggesting that prey availability was not affected by the wildfire. While parasite presence was seemingly not affected by fire, the timing of initial parasite infection for animals in the study was unknown, so we also evaluated parasitism as an independent variable relative to the other metrics. Our results showed that parasitic infections lead to reduced bactericidal capacity and body mass in lizards, suggesting clinical disease and depletion of innate immune resources. Moreover, we observed increased HLR with fire and parasitic infections and a strong negative correlation with BKA. These findings suggest that the increased environmental temperature following wildfires may lead to increased CORT and decreased BKA.
Collapse
Affiliation(s)
- Adriana P Furtado
- Departamento de Ciências Animais, Universidade de Brasília, Brasília, Distrito Federal, Brazil
| | - Izabelle T S Carvalho
- Departamento de Ciências Animais, Universidade de Brasília, Brasília, Distrito Federal, Brazil
| | - Erin L Lewis
- Department of Biology, Utah State University, Logan, Utah, USA
| | - Cole A Bleke
- Department of Wildland Resources, Utah State University, Logan, Utah, USA
| | - Davi L Pantoja
- Departamento de Biologia, Universidade Federal do Piauí, Teresina, Piauí, Brazil
| | - Guarino R Colli
- Departamento de Zoologia, Universidade de Brasília, Brasília, Distrito Federal, Brazil
| | | | - Giane R Paludo
- Departamento de Ciências Animais, Universidade de Brasília, Brasília, Distrito Federal, Brazil
| |
Collapse
|
12
|
Dadfar MJ, Torshizi RV, Maghsoudi A, Ehsani A, Masoudi AA. Trade-off between feed efficiency and immunity in specialized high-performing chickens. Poult Sci 2023; 102:102703. [PMID: 37141810 DOI: 10.1016/j.psj.2023.102703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 04/03/2023] [Accepted: 04/03/2023] [Indexed: 05/06/2023] Open
Abstract
Based on resource allocation theory, ignoring importance of immunity, and focus on growth and feed efficiency (FE) traits in breeding plans may lead to serious weakness in immune system performance. However, in poultry the adverse effects of selection for FE on the immune system are unclear. Therefore, an experiment was conducted to study the trade-off between FE and immunity using a total of 180 high-performing specialized male chickens from a commercial broiler line which were selected over 30 generations for growth (body weight gain, BWG) and FE (residual feed intake, RFI). Birds were reared for 42 d and 5 FE-related traits of the birds in the last week were considered including daily feed intake (DFI), feed conversion ratio (FCR), residual feed intake (RFI), residual BW gain (RG), and residual intake and gain (RIG). For all 180 chickens, immune system performance including humoral immune response, cell-mediated immunity (CMI), and the activity of lysozyme enzyme (L. activity) as innate immunity was measured. After ascending sort of each FE records, 10% of higher records (H-FE: N = 18) and 10% of lower records (L-FE: N = 18) were determined, and immunity between L-FE and H-FE groups were compared. Moreover, L-BWG and H-BWG were analyzed because BWG is one of components in the FE formula. Performance of the immune system was not statistically different for CMI in none of the studied FE groups. Moreover, high and low groups for DFI and BWG were not different regarding the immunity of the birds. Antibody titers against Newcastle disease virus (NDV) were different between low and high groups of FCR, RG, and RIG. Likewise, SRBC-derived antibodies were significantly different between RFI groups. Rather than humoral immunity, RIG had adversely effect on the innate immunity. Results of the present study showed that although RIG is a more appropriate indicator for FE, choosing for high RIG can weaken the performance of the both humoral and innate immune systems, while RFI had fewer adverse effects.
Collapse
Affiliation(s)
- Mohammad-Javad Dadfar
- Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Rasoul Vaez Torshizi
- Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran.
| | - Ali Maghsoudi
- Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Alireza Ehsani
- Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Ali Akbar Masoudi
- Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| |
Collapse
|
13
|
Sadr AS, Nassiri M, Ghaderi-Zefrehei M, Heidari M, Smith J, Muhaghegh Dolatabady M. RNA-Seq Profiling between Commercial and Indigenous Iranian Chickens Highlights Differences in Innate Immune Gene Expression. Genes (Basel) 2023; 14:genes14040793. [PMID: 37107551 PMCID: PMC10138050 DOI: 10.3390/genes14040793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 03/17/2023] [Accepted: 03/20/2023] [Indexed: 03/29/2023] Open
Abstract
The purpose of the current study was to examine transcriptomic-based profiling of differentially expressed innate immune genes between indigenous and commercial chickens. In order to compare the transcriptome profiles of the different chicken breeds, we extracted RNA from blood samples of the Isfahan indigenous chicken (as indigenous) and Ross broiler chicken (as commercial) breeds. RNA-Seq yielded totals of 36,763,939 and 31,545,002 reads for the indigenous and commercial breeds, respectively, with clean reads then aligned to the chicken reference genome (Galgal5). Overall, 1327 genes were significantly differentially expressed, of which 1013 genes were upregulated in the commercial versus the indigenous breed, while 314 were more highly expressed in the indigenous birds. Furthermore, our results demonstrated that the SPARC, ATP6V0D2, IL4I1, SMPDL3A, ADAM7, TMCC3, ULK2, MYO6, THG1L and IRG1 genes were the most significantly expressed genes in the commercial birds and the PAPPA, DUSP1, PSMD12, LHX8, IL8, TRPM2, GDAP1L1, FAM161A, ABCC2 and ASAH2 genes were the most significant in the indigenous chickens. Of notable finding in this study was that the high-level gene expressions of heat-shock proteins (HSPs) in the indigenous breeds could serve as a guideline for future genetic improvement. This study identified genes with breed-specific expression, and comparative transcriptome analysis helped understanding of the differences in underlying genetic mechanisms between commercial and local breeds. Therefore, the current results can be used to identify candidate genes for further breed improvement.
Collapse
Affiliation(s)
- Ayeh Sadat Sadr
- South of Iran Aquaculture Research Institute, Iranian Fisheries Science Research Institute (IFSRI), Agricultural Research Education and Extension Organization (AREEO), Ahvaz 71867-37533, Iran
| | - Mohammadreza Nassiri
- Recombinant Proteins Research Group, The Research Institute of Biotechnology, Ferdowsi University of Mashhad, Mashhad 91779-48974, Iran
- Research Associate/Peptide Drug and Bioinformatics, School of Biotechnology and Biomolecular Sciences Level 2, E26, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
| | - Mostafa Ghaderi-Zefrehei
- Department of Animal Science, Agricultural Faculty, Yasouj University, Yasouj 75918-74934, Iran
- Correspondence: or (M.G.-Z.); (J.S.)
| | - Maryam Heidari
- Department of Animal Sciences, College of Agriculture, Isfahan University of Technology, Isfahan 83111-84156, Iran
| | - Jacqueline Smith
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK
- Correspondence: or (M.G.-Z.); (J.S.)
| | | |
Collapse
|
14
|
Boyner M, Ivarsson E, Wattrang E, Sun L, Wistedt A, Wall H. Effects of access to feed, water, and a competitive exclusion product in the hatcher on some immune traits and gut development in broiler chickens. Br Poult Sci 2023. [PMID: 36628611 DOI: 10.1080/00071668.2022.2163152] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
This study evaluated the effect of access to feed, water, and the competitive exclusion (CE) product Broilact®, administered in the hatcher, on broiler performance, caecal microbiota development, organ development, intestinal morphology, serum levels of IgY and vaccine-induced antibody responses.In total, 250 chicks were hatched in a HatchCareTM hatcher and divided into four groups, given access to feed, water and the CE product sprayed on the chicks (CEs); access to feed, water, and the CE product in water (CEw); access to feed and water (Cpos); or no access to feed and water (Cneg) in the hatcher. At the research facility, 10 chicks per hatching treatment were euthanized for organ measurements. The remaining 200 chicks were randomly distributed to 20 pens. On d 11, all birds were vaccinated against avian pneumovirus (APV). Three focal birds per pen were blood-sampled weekly for quantification of IgY and serum antibodies to APV. On d 11 and 32, two birds per replicate pen were euthanised for organ measurements and sample collection. Feed intake and body weight were recorded weekly.Delayed access to feed and water reduced weight gain and feed intake early in life. At the end of the study, no differences in body weight remained.There were some early effects on organs, with depressed intestinal development and higher relative gizzard weight for the Cneg group at placement. No treatment effects on the immune traits measured were detected. The relative abundance of seven bacterial genera differed between treatment groups at d 11 of age. The results suggested that chickens are capable of compensating for 40 h feed and water deprival post-hatch. Provision of Broilact® did not have any persistent performance-enhancing properties, although different outcomes under rearing conditions closer to commercial production cannot be ruled out.
Collapse
Affiliation(s)
- M Boyner
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - E Ivarsson
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - E Wattrang
- Department of Microbiology, National Veterinary Institute, Uppsala
| | - L Sun
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - A Wistedt
- Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - H Wall
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, Uppsala, Sweden
| |
Collapse
|
15
|
Miyumo SA, Wasike CB, Ilatsia ED, Bennewitz J, Chagunda MGG. Genetic and phenotypic correlations among feed efficiency, immune and production traits in indigenous chicken of Kenya. Front Genet 2023; 13:1070304. [PMID: 36685862 PMCID: PMC9849598 DOI: 10.3389/fgene.2022.1070304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 12/20/2022] [Indexed: 01/07/2023] Open
Abstract
This study aimed at estimating genetic and phenotypic relationships among feed efficiency, immune and production traits measured pre- (9-20 weeks of age) and post- (12 weeks from on-set of lay) maturity. Production traits were average daily gain (ADG) and average daily feed-intake (ADFI1) in the pre-maturity period and age at first egg (AFE), average daily feed-intake (ADFI2) and average daily egg mass (EM) in the post-maturity period. Feed efficiency comprised of residual feed intake (RFI) estimated in both periods. Natural antibodies binding to keyhole limpet hemocyanin (KLH-IgM) and specific antibodies binding to Newcastle disease virus (NDV-IgG) measured at 16 and 28 weeks of age represented immune traits pre- and post-maturity, respectively. In the growing period, 1,820 records on ADG, KLH-IgM and NDV-IgG, and 1,559 records on ADFI1 and RFI were available for analyses. In the laying period, 1,340 records on AFE, EM, KLH-IgM and NDV-IgG, and 1,288 records on ADFI2 and RFI were used in the analyses. Bi-variate animal mixed model was fitted to estimate (co)variance components, heritability and correlations among the traits. The model constituted sex, population, generation, line and genotype as fixed effects, and animal and residual effects as random variables. During the growing period, moderate to high heritability (0.36-0.68) was estimated for the production traits and RFI while the antibody traits had low (0.10-0.22) heritability estimates. Post-maturity, the production traits and RFI were moderately (0.30-0.37) heritable while moderate to high (0.25-0.41) heritability was estimated for the antibody traits. Genetic correlations between feed efficiency and production traits in both periods showed that RFI had negative genetic correlations with ADG (-0.47) and EM (-0.56) but was positively correlated with ADFI1 (0.60), ADFI2 (0.74) and AFE (0.35). Among immune and production traits, KLH-IgM and NDV-IgG had negative genetic correlations with ADG (-0.22; -0.56), AFE (-0.39; -0.42) and EM (-0.35; -0.16) but were positively correlated with ADFI1 (0.41; 0.34) and ADFI2 (0.47; 0.52). Genetic correlations between RFI with KLH-IgM (0.62; 0.33) and NDV-IgG (0.58; 0.50) were positive in both production periods. Feed intake, RFI and antibody traits measured in both production periods were positively correlated with estimates ranging from 0.48 to 0.82. Results from this study indicate selection possibilities to improve production, feed efficiency and immune-competence in indigenous chicken. The genetic correlations suggest that improved feed efficiency would be associated with high growth rates, early maturing chicken, high egg mass and reduced feed intake. In contrast, improved general (KLH-IgM) and specific (NDV-IgG) immunity would result in lower growth rates and egg mass but associated with early sexual maturation and high feed intake. Unfavorable genetic correlations between feed efficiency and immune traits imply that chicken of higher productivity and antibody levels will consume more feed to support both functions. These associations indicate that selective breeding for feed efficiency and immune-competence may have genetic consequences on production traits and should therefore be accounted for in indigenous chicken improvement programs.
Collapse
Affiliation(s)
- Sophie A. Miyumo
- Department of Animal Breeding and Husbandry in the Tropics and Sub-Tropics, University of Hohenheim, Stuttgart, Germany,*Correspondence: Sophie A. Miyumo,
| | - Chrilukovian B. Wasike
- Livestock Efficiency Enhancement Group (LEEG), Department of Animal and Fisheries Sciences, Maseno University, Maseno, Kenya
| | - Evans D. Ilatsia
- Kenya Agricultural and Livestock Research Organization, Naivasha, Kenya
| | - Jorn Bennewitz
- Department of Animal Breeding and Genetics, University of Hohenheim, Stuttgart, Germany
| | - Mizeck G. G. Chagunda
- Department of Animal Breeding and Husbandry in the Tropics and Sub-Tropics, University of Hohenheim, Stuttgart, Germany
| |
Collapse
|
16
|
Zou X, Liu T, Li Y, Chen P, Yan X, Ma J, Ji J, Qu H, Cai M, He Y, He J, Xu X, Lin C, Zhou G, Shu D, Luo C. Long-term divergent selection for residual feed intake in Chinese broiler chickens. Poult Sci 2022; 102:102298. [PMID: 36638759 PMCID: PMC9843260 DOI: 10.1016/j.psj.2022.102298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 10/24/2022] [Accepted: 10/24/2022] [Indexed: 01/12/2023] Open
Abstract
This study aimed to assess the effect of inbreeding on production traits using a long-term closed-line population recorded for residual feed intake (RFI). The study first used data from a previously reported population to determine the appropriate period of divergent selection for RFI. The results showed that RFI had similar moderate heritability estimates (0.28-0.34) during the fast-growing period (7-12 wk), and RFI at 7 to 10 wk had the highest heritability (0.34). Therefore, divergent selection was performed in a Chinese broiler population for RFI at 7 to 10 wk; the total sample size from generations zero (G0) to 13 was 9050. The divergence between the 2 lines increased steadily throughout generations, resulting in G13 with average RFI values of 304.55 in high RFI (HRFI) males, -160.31 in low RFI (LRFI) males, 296.30 in HRFI females and -157.55 in LRFI females. The feed intake (FI) and feed conversion ratio were almost higher in HRFI broilers than in LRFI broilers, and the magnitude of the difference in FI increased from approximately 4% for both sexes in G1 to approximately 33% in G13. Body weight gain was irregular from G1 to G13 and higher in LRFI broilers than in HRFI broilers after G10. Indeed, the HRFI broilers consumed more food, but they were lighter than LRFI broilers. In G13, LRFI males had heavier slaughter weight, longer cecum length, more white blood cells (WBC), red blood cells (RBC) and hemoglobin (HGB), but triglycerides, lower dressed percentage, percentage of half eviscerated yield, and eviscerated yield than HRFI males. LRFI females had a higher percentage of breast muscle and gizzard yield, longer cecum length, and more WBCs, RBCs and HGB but less abdominal fat and serum total cholesterol than HRFI females. This study was the first to verify that long-term divergent selection for RFI in Chinese broiler chickens is positive and beneficial.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - Dingming Shu
- State Key Laboratory of Livestock and Poultry Breeding & Guangdong Key Laboratory of Animal Breeding and Nutrition & Institute of Animal Science, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
| | - Chenglong Luo
- State Key Laboratory of Livestock and Poultry Breeding & Guangdong Key Laboratory of Animal Breeding and Nutrition & Institute of Animal Science, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
| |
Collapse
|
17
|
Dunislawska A, Pietrzak E, Bełdowska A, Siwek M. Health in poultry- immunity and microbiome with regard to a concept of one health. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Abstract
The overall concept of OneHealth focuses on health and infectious disease in the context of the relationship between humans, animals, and the environment. In poultry production, there are many opportunities to implement OneHealth by organizing work and introducing appropriate engineering solutions. It is recommended that future research directions include designing and testing solutions to improve air quality and the elimination of antibiotics in the poultry industry. For this to be possible, it is essential to understand the indigenous microbiota of poultry, which plays a crucial role in nutrients, but also restricts the growth of pathogenic organisms. In poultry production, the most important thing is disease control in the herd, high product quality, and product efficiency. Food safety is key for consumers, as some zoonoses are transmitted through the food chain. Moreover, antibiotic resistance of bacteria is becoming a growing threat. For this reason, it is essential to maintain the proper immune status in the herd. Virus disease control in poultry is based on vaccination programs and the maintenance of biosecurity. This chapter aims to present the current state of knowledge in the field of immunity and microbiome of poultry in the context of the OneHealth concept.
Collapse
Affiliation(s)
- Aleksandra Dunislawska
- Department of Animal Biotechnology and Genetics , Bydgoszcz University of Science and Technology , Mazowiecka 28, 85-796 Bydgoszcz , Poland
| | - Elżbieta Pietrzak
- Department of Animal Biotechnology and Genetics , Bydgoszcz University of Science and Technology , Mazowiecka 28, 85-796 Bydgoszcz , Poland
| | - Aleksandra Bełdowska
- Department of Animal Biotechnology and Genetics , Bydgoszcz University of Science and Technology , Mazowiecka 28, 85-796 Bydgoszcz , Poland
| | - Maria Siwek
- Department of Animal Biotechnology and Genetics , Bydgoszcz University of Science and Technology , Mazowiecka 28, 85-796 Bydgoszcz , Poland
| |
Collapse
|
18
|
Lopez BS. Can Infectious Disease Control Be Achieved without Antibiotics by Exploiting Mechanisms of Disease Tolerance? Immunohorizons 2022; 6:730-740. [DOI: 10.4049/immunohorizons.2200043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 10/04/2022] [Indexed: 01/04/2023] Open
Abstract
Abstract
Antimicrobial use in animal agriculture may be contributing to the emerging public health crisis of antimicrobial resistance. The sustained prevalence of infectious diseases driving antimicrobial use industry-wide suggests that traditional methods of bolstering disease resistance are, for some diseases, ineffective. A paradigm shift in our approach to infectious disease control is needed to reduce antimicrobial use and sustain animal and human health and the global economy. Targeting the defensive mechanisms that promote the health of an infected host without impacting pathogen fitness, termed “disease tolerance,” is a novel disease control approach ripe for discovery. This article presents examples of disease tolerance dictating clinical outcomes for several infectious diseases in humans, reveals evidence suggesting a similarly critical role of disease tolerance in the progression of infectious diseases plaguing animal agriculture, and thus substantiates the assertion that exploiting disease tolerance mechanisms can positively impact animal and human health.
Collapse
Affiliation(s)
- Brina S. Lopez
- Department of Farm Animal Medicine, Midwestern University College of Veterinary Medicine, Glendale, AZ
| |
Collapse
|
19
|
Emami NK, Schreier LL, Greene E, Tabler T, Orlowski SK, Anthony NB, Proszkowiec-Weglarz M, Dridi S. Ileal microbial composition in genetically distinct chicken lines reared under normal or high ambient temperatures. Anim Microbiome 2022; 4:28. [PMID: 35449035 PMCID: PMC9028080 DOI: 10.1186/s42523-022-00183-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 04/06/2022] [Indexed: 12/20/2022] Open
Abstract
Background Heat stress (HS) has negative effects on poultry productivity, health and welfare resulting in economic losses. Broiler chickens are particularly susceptible to HS due to their high metabolic rate and rapid growth. The commensal intestinal bacterial populations have an important physiological role in the host and could ameliorate the negative effect of HS on the host. Thus, the aim of this study was to compare changes in the ileal (IL) microbiota in four different broiler lines during HS.
Results Day-old broiler chicks from Giant Jungle Fowl (JF), Athens Canadian Random Bred (ACRB), 1995 Random Bred (L1995), and Modern Random Bred (L2015) lines were raised under thermoneutral (TN) conditions until day (d) 28. On d 29 birds were subjected to TN (24 °C) or chronic cyclic HS (8 h/d, 36 °C) condition till d 56. On d 56 two birds per pen were euthanized, and IL luminal content (IL-L) and mucosal scrapings (IL-M) were collected for bacterial DNA isolation. Libraries were constructed using V3–V4 16S rRNA primers and sequenced using MiSeq. DNA sequences were analyzed using QIIME2 platform and SILVA 132 database for alpha and beta diversity, and taxonomic composition, respectively. Functional property of microbiota was predicted using the PICRUSt 2 pipeline and illustrated with STAMP software. Shannon index was significantly elevated in IL-M under HS. β-diversity PCoA plots revealed separation of microbial community of L2015-TN from JF-TN, JF-HS, ACRB-TN, and ACRB-HS in the IL-M. PERMANOVA analysis showed a significant difference between microbial community of L1995-HS compared to ACRB-HS and JF-TN, L1995-TN compared to ACRB-HS and JF-TN, L2015-HS compared to ACRB-HS and ACRB-TN, L2015-HS compared to JF-TN, L2015-TN compared to ACRB-HS and JF-TN, and ACRB-HS compared to JF-TN in the IL-L. The impact of HS on microbial composition of IL-M was more prominent compared to IL-L with 12 and 2 taxa showing significantly different relative abundance, respectively. Furthermore, differences in microbiota due to the genetic line were more prominent in IL-M than IL-L with 18 and 8 taxa showing significantly different relative abundance, respectively. Unlike taxonomy, predicted function of microbiota was not affected by HS. Comparison of L2015 with JF or ACRB showed significant changes in predicted function of microbiota in both, IL-M and IL-L. Differences were most prominent between L2015 and JF; while there was no difference between L2015 and L1995. Conclusions These data indicate the genetic line × temperature effect on the diversity and composition of IL microbiota. Moreover, the data showcase the effect of host genetics on the composition of IL microbiota and their predicted function. These data are of critical importance for devising nutritional strategies to maintain GIT microbial balance and alleviate the negative effects of HS on broiler chickens’ performance and health. Supplementary Information The online version contains supplementary material available at 10.1186/s42523-022-00183-y.
Collapse
Affiliation(s)
- Nima K Emami
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA
| | - Lori L Schreier
- United States Department of Agriculture, Agricultural Research Service, Northeast Area, Animal Biosciences and Biotechnology Laboratory, Beltsville, MD, 20705, USA
| | - Elizabeth Greene
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA
| | - Travis Tabler
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA
| | - Sara K Orlowski
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA
| | - Nicholas B Anthony
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA
| | - Monika Proszkowiec-Weglarz
- United States Department of Agriculture, Agricultural Research Service, Northeast Area, Animal Biosciences and Biotechnology Laboratory, Beltsville, MD, 20705, USA.
| | - Sami Dridi
- Center of Excellence for Poultry Science, University of Arkansas, 1260 W. Maple Street, Fayetteville, AR, 72701, USA.
| |
Collapse
|
20
|
Meyer MM, Lamont SJ, Bobeck EA. Mitochondrial and Glycolytic Capacity of Peripheral Blood Mononuclear Cells Isolated From Diverse Poultry Genetic Lines: Optimization and Assessment. Front Vet Sci 2022; 8:815878. [PMID: 35155649 PMCID: PMC8831803 DOI: 10.3389/fvets.2021.815878] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 12/10/2021] [Indexed: 12/03/2022] Open
Abstract
Cellular metabolic preference is a culmination of environment, nutrition, genetics, and individual variation in poultry. The Seahorse XFe24 analyzer was used to generate foundational immune cellular metabolic data in layer, broiler, and legacy genetic strains using fresh chicken peripheral blood mononuclear cells (PBMCs). Baseline mitochondrial respiration [oxygen consumption rate (OCR)] and glycolytic activity [extracellular acidification rate (ECAR)] were determined in modern commercial laying hen (Bovans White) and broiler (Ross 308) lines, as well as the highly inbred lines of Iowa State University (L8, Fayoumi M-15.2, Spanish, Ghs-6), partially inbred broiler line, and advanced intercrosses of broiler by Fayoumi M-15.2 and broiler by Leghorn lines. Commercial broiler vs. Bovans layer and unvaccinated vs. vaccinated Bovans layer immune cell metabolic potential were compared following an in-assay pathway inhibitor challenge. Titrations consistently showed that optimal PBMC density in laying hens and broilers was 3 million cells per well monolayer. Assay media substrate titrations identified 25 mM glucose, 1 mM glutamine, and 1 mM sodium pyruvate as the optimal concentration for layer PBMCs. Pathway inhibitor injection titrations in Bovans layers and broilers showed that 0.5 μM carbonyl cyanide-4 phenylhydrazone (FCCP) and 1 μM oligomycin were optimal. Baseline OCR and ECAR were significantly affected by genetic line of bird (p < 0.05), with the dual-purpose, L8 inbred line showing the highest OCR (mean 680 pmol/min) and the partially inbred broiler line showing the greatest ECAR (mean 74 mpH/min). ECAR metabolic potential tended to be greater in modern layers than broilers (p < 0.10), indicating increased ability to utilize the glycolytic pathway to produce energy. OCR was significantly higher in vaccinated than unvaccinated hens (p < 0.05), while baseline ECAR values were significantly lower in vaccinated Bovans laying hens, showing increased oxidative capacity in activated immune cells. These baseline data indicate that different genetic strains of birds utilized the mitochondrial respiration pathway differently and that modern commercial lines may have reduced immune cell metabolic capacity compared with legacy lines due to intense selection for production traits. Furthermore, the Seahorse assay demonstrated the ability to detect differences in cellular metabolism between genetic lines and immune status of chickens.
Collapse
Affiliation(s)
| | | | - Elizabeth A. Bobeck
- Department of Animal Science, Iowa State University, Ames, IA, United States
| |
Collapse
|
21
|
Douhard F, Douhard M, Gilbert H, Monget P, Gaillard J, Lemaître J. How much energetic trade-offs limit selection? Insights from livestock and related laboratory model species. Evol Appl 2021; 14:2726-2749. [PMID: 34950226 PMCID: PMC8674892 DOI: 10.1111/eva.13320] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 10/22/2021] [Accepted: 10/22/2021] [Indexed: 12/22/2022] Open
Abstract
Trade-offs between life history traits are expected to occur due to the limited amount of resources that organisms can obtain and share among biological functions, but are of least concern for selection responses in nutrient-rich or benign environments. In domestic animals, selection limits have not yet been reached despite strong selection for higher meat, milk or egg yields. Yet, negative genetic correlations between productivity traits and health or fertility traits have often been reported, supporting the view that trade-offs do occur in the context of nonlimiting resources. The importance of allocation mechanisms in limiting genetic changes can thus be questioned when animals are mostly constrained by their time to acquire and process energy rather than by feed availability. Selection for high productivity traits early in life should promote a fast metabolism with less energy allocated to self-maintenance (contributing to soma preservation and repair). Consequently, the capacity to breed shortly after an intensive period of production or to remain healthy should be compromised. We assessed those predictions in mammalian and avian livestock and related laboratory model species. First, we surveyed studies that compared energy allocation to maintenance between breeds or lines of contrasting productivity but found little support for the occurrence of an energy allocation trade-off. Second, selection experiments for lower feed intake per unit of product (i.e. higher feed efficiency) generally resulted in reduced allocation to maintenance, but this did not entail fitness costs in terms of survival or future reproduction. These findings indicate that the consequences of a particular selection in domestic animals are much more difficult to predict than one could anticipate from the energy allocation framework alone. Future developments to predict the contribution of time constraints and trade-offs to selection limits will be insightful to breed livestock in increasingly challenging environments.
Collapse
Affiliation(s)
| | - Mathieu Douhard
- Laboratoire de Biométrie & Biologie EvolutiveCNRSUMR 5558Université Lyon 1VilleurbanneFrance
| | - Hélène Gilbert
- GenPhySEINRAEENVTUniversité de ToulouseCastanet‐TolosanFrance
| | | | - Jean‐Michel Gaillard
- Laboratoire de Biométrie & Biologie EvolutiveCNRSUMR 5558Université Lyon 1VilleurbanneFrance
| | - Jean‐François Lemaître
- Laboratoire de Biométrie & Biologie EvolutiveCNRSUMR 5558Université Lyon 1VilleurbanneFrance
| |
Collapse
|