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For: Schaffer AA, Bazarsky M, Levy K, Chalifa-Caspi V, Gat U. A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis. BMC Genomics 2016;17:718. [PMID: 27605362 DOI: 10.1186/s12864-016-3027-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Accepted: 08/20/2016] [Indexed: 02/07/2023]  Open
Number Cited by Other Article(s)
1
Zhang Q, Fu Y, Zhang Y, Liu H. Genome-wide identification and expression profiling of the Wnt gene family in three abalone species. Genes Genomics 2024;46:1363-1374. [PMID: 39397130 DOI: 10.1007/s13258-024-01579-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Accepted: 10/02/2024] [Indexed: 10/15/2024]
2
Holmes G, Ferguson SR, Lewis PA, Echeverri K. LRRK2 kinase activity is necessary for development and regeneration in Nematostella vectensis. Neural Dev 2024;19:16. [PMID: 39118162 PMCID: PMC11308222 DOI: 10.1186/s13064-024-00193-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 07/23/2024] [Indexed: 08/10/2024]  Open
3
Sierra NC, Olsman N, Yi L, Pachter L, Goentoro L, Gold DA. A Novel Approach to Comparative RNA-Seq Does Not Support a Conserved Set of Orthologs Underlying Animal Regeneration. Genome Biol Evol 2024;16:evae120. [PMID: 38922665 PMCID: PMC11214158 DOI: 10.1093/gbe/evae120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 05/23/2024] [Accepted: 06/05/2024] [Indexed: 06/27/2024]  Open
4
Vargas A, DeBiasse M, Dykes L, Edgar A, Hayes T, Groso D, Babonis L, Martindale M, Ryan J. Morphological and dietary changes encoded in the genome of Beroe ovata, a ctenophore-eating ctenophore. NAR Genom Bioinform 2024;6:lqae072. [PMID: 38895105 PMCID: PMC11184263 DOI: 10.1093/nargab/lqae072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 05/03/2024] [Accepted: 05/30/2024] [Indexed: 06/21/2024]  Open
5
Cole AG, Steger J, Hagauer J, Denner A, Ferrer Murguia P, Knabl P, Narayanaswamy S, Wick B, Montenegro JD, Technau U. Updated single cell reference atlas for the starlet anemone Nematostella vectensis. Front Zool 2024;21:8. [PMID: 38500146 PMCID: PMC10946136 DOI: 10.1186/s12983-024-00529-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Accepted: 03/08/2024] [Indexed: 03/20/2024]  Open
6
Holmes G, Ferguson SR, Lewis PA, Echeverri K. LRRK2 kinase activity is necessary for development and regeneration in Nematostella vectensis. RESEARCH SQUARE 2023:rs.3.rs-3525606. [PMID: 37986927 PMCID: PMC10659525 DOI: 10.21203/rs.3.rs-3525606/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
7
Qarri A, Rinkevich B. Transient impacts of UV-B irradiation on whole body regeneration in a colonial urochordate. Dev Biol 2023;503:83-94. [PMID: 37619713 DOI: 10.1016/j.ydbio.2023.08.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 08/17/2023] [Accepted: 08/21/2023] [Indexed: 08/26/2023]
8
Xu J, Mead O, Moya A, Caglar C, Miller DJ, Adamski M, Adamska M. Wound healing and regeneration in the reef building coral Acropora millepora. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2022.979278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]  Open
9
Shum CW, Nong W, So WL, Li Y, Qu Z, Yip HY, Swale T, Ang PO, Chan KM, Chan TF, Chu KH, Chui AP, Lau KF, Ngai SM, Xu F, Hui JH. Genome of the sea anemone Exaiptasia pallida and transcriptome profiles during tentacle regeneration. Front Cell Dev Biol 2022;10:900321. [PMID: 36072338 PMCID: PMC9444052 DOI: 10.3389/fcell.2022.900321] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Accepted: 07/08/2022] [Indexed: 12/19/2022]  Open
10
Croce O, Röttinger E. Creating a User-Friendly and Open-Access Gene Expression Database for Comparing Embryonic Development and Regeneration in Nematostella vectensis. Methods Mol Biol 2022;2450:649-662. [PMID: 35359334 PMCID: PMC9761911 DOI: 10.1007/978-1-0716-2172-1_35] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
11
Plessier F, Schmutz S, Novault S, Marlow H. Single-Cell Transcriptomic Analysis in the Regenerating Cnidarian Nematostella vectensis. Methods Mol Biol 2022;2450:565-581. [PMID: 35359329 PMCID: PMC9761532 DOI: 10.1007/978-1-0716-2172-1_30] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
12
Klein S, Frazier V, Readdean T, Lucas E, Diaz-Jimenez EP, Sogin M, Ruff ES, Echeverri K. Common Environmental Pollutants Negatively Affect Development and Regeneration in the Sea Anemone Nematostella vectensis Holobiont. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.786037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
13
Nematostella vectensis, an Emerging Model for Deciphering the Molecular and Cellular Mechanisms Underlying Whole-Body Regeneration. Cells 2021;10:cells10102692. [PMID: 34685672 PMCID: PMC8534814 DOI: 10.3390/cells10102692] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 09/30/2021] [Accepted: 10/04/2021] [Indexed: 12/18/2022]  Open
14
Srivastava M. Beyond Casual Resemblances: Rigorous Frameworks for Comparing Regeneration Across Species. Annu Rev Cell Dev Biol 2021;37:415-440. [PMID: 34288710 DOI: 10.1146/annurev-cellbio-120319-114716] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
15
The Tentacular Spectacular: Evolution of Regeneration in Sea Anemones. Genes (Basel) 2021;12:genes12071072. [PMID: 34356088 PMCID: PMC8306839 DOI: 10.3390/genes12071072] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 06/03/2021] [Accepted: 07/12/2021] [Indexed: 12/12/2022]  Open
16
Parisi MG, Grimaldi A, Baranzini N, La Corte C, Dara M, Parrinello D, Cammarata M. Mesoglea Extracellular Matrix Reorganization during Regenerative Process in Anemonia viridis (Forskål, 1775). Int J Mol Sci 2021;22:5971. [PMID: 34073146 PMCID: PMC8198993 DOI: 10.3390/ijms22115971] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 05/28/2021] [Accepted: 05/29/2021] [Indexed: 12/23/2022]  Open
17
Ramirez AN, Loubet-Senear K, Srivastava M. A Regulatory Program for Initiation of Wnt Signaling during Posterior Regeneration. Cell Rep 2021;32:108098. [PMID: 32877680 DOI: 10.1016/j.celrep.2020.108098] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 06/03/2020] [Accepted: 08/11/2020] [Indexed: 12/17/2022]  Open
18
Structural and Functional Characterization of the FGF Signaling Pathway in Regeneration of the Polychaete Worm Alitta virens (Annelida, Errantia). Genes (Basel) 2021;12:genes12060788. [PMID: 34063978 PMCID: PMC8224027 DOI: 10.3390/genes12060788] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 05/13/2021] [Accepted: 05/14/2021] [Indexed: 12/16/2022]  Open
19
Bideau L, Kerner P, Hui J, Vervoort M, Gazave E. Animal regeneration in the era of transcriptomics. Cell Mol Life Sci 2021;78:3941-3956. [PMID: 33515282 PMCID: PMC11072743 DOI: 10.1007/s00018-021-03760-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 01/04/2021] [Accepted: 01/09/2021] [Indexed: 12/27/2022]
20
Cazet JF, Cho A, Juliano CE. Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra. eLife 2021;10:60562. [PMID: 33779545 PMCID: PMC8049744 DOI: 10.7554/elife.60562] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 03/28/2021] [Indexed: 12/13/2022]  Open
21
Amiel AR, Michel V, Carvalho JE, Shkreli M, Petit C, Röttinger E. [The sea anemone Nematostella vectensis, an emerging model for biomedical research: Mechano-sensitivity, extreme regeneration and longevity]. Med Sci (Paris) 2021;37:167-177. [PMID: 33591260 DOI: 10.1051/medsci/2020282] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
22
Leclère L, Nir TS, Bazarsky M, Braitbard M, Schneidman-Duhovny D, Gat U. Dynamic Evolution of the Cthrc1 Genes, a Newly Defined Collagen-Like Family. Genome Biol Evol 2020;12:3957-3970. [PMID: 32022859 PMCID: PMC7058181 DOI: 10.1093/gbe/evaa020] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/28/2020] [Indexed: 12/11/2022]  Open
23
Sinigaglia C, Peron S, Eichelbrenner J, Chevalier S, Steger J, Barreau C, Houliston E, Leclère L. Pattern regulation in a regenerating jellyfish. eLife 2020;9:e54868. [PMID: 32894220 PMCID: PMC7524552 DOI: 10.7554/elife.54868] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 09/05/2020] [Indexed: 12/13/2022]  Open
24
Feeding-dependent tentacle development in the sea anemone Nematostella vectensis. Nat Commun 2020;11:4399. [PMID: 32879319 PMCID: PMC7467937 DOI: 10.1038/s41467-020-18133-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Accepted: 08/05/2020] [Indexed: 01/12/2023]  Open
25
van der Burg CA, Pavasovic A, Gilding EK, Pelzer ES, Surm JM, Smith HL, Walsh TP, Prentis PJ. The Rapid Regenerative Response of a Model Sea Anemone Species Exaiptasia pallida Is Characterised by Tissue Plasticity and Highly Coordinated Cell Communication. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2020;22:285-307. [PMID: 32016679 DOI: 10.1007/s10126-020-09951-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Accepted: 01/20/2020] [Indexed: 06/10/2023]
26
Genomic analysis of the tryptome reveals molecular mechanisms of gland cell evolution. EvoDevo 2019;10:23. [PMID: 31583070 PMCID: PMC6767649 DOI: 10.1186/s13227-019-0138-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Accepted: 09/13/2019] [Indexed: 12/25/2022]  Open
27
Cary GA, Wolff A, Zueva O, Pattinato J, Hinman VF. Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa. BMC Biol 2019;17:16. [PMID: 30795750 PMCID: PMC6385403 DOI: 10.1186/s12915-019-0633-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 02/04/2019] [Indexed: 12/16/2022]  Open
28
Cao PL, Kumagai N, Inoue T, Agata K, Makino T. JmjC Domain-Encoding Genes Are Conserved in Highly Regenerative Metazoans and Are Associated with Planarian Whole-Body Regeneration. Genome Biol Evol 2019;11:552-564. [PMID: 30698705 PMCID: PMC6390904 DOI: 10.1093/gbe/evz021] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/25/2019] [Indexed: 12/26/2022]  Open
29
Warner JF, Guerlais V, Amiel AR, Johnston H, Nedoncelle K, Röttinger E. NvERTx: a gene expression database to compare embryogenesis and regeneration in the sea anemone Nematostella vectensis. Development 2018;145:dev.162867. [PMID: 29739837 DOI: 10.1242/dev.162867] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2017] [Accepted: 04/25/2018] [Indexed: 01/28/2023]
30
Gufler S, Artes B, Bielen H, Krainer I, Eder MK, Falschlunger J, Bollmann A, Ostermann T, Valovka T, Hartl M, Bister K, Technau U, Hobmayer B. β-Catenin acts in a position-independent regeneration response in the simple eumetazoan Hydra. Dev Biol 2017;433:310-323. [PMID: 29108673 DOI: 10.1016/j.ydbio.2017.09.005] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2017] [Revised: 08/23/2017] [Accepted: 09/04/2017] [Indexed: 10/18/2022]
31
Transcriptomic investigation of wound healing and regeneration in the cnidarian Calliactis polypus. Sci Rep 2017;7:41458. [PMID: 28150733 PMCID: PMC5288695 DOI: 10.1038/srep41458] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 12/19/2016] [Indexed: 12/11/2022]  Open
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