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Studying the cardiovascular system of a marine crustacean with magnetic resonance imaging at 9.4 T. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2019; 32:567-579. [PMID: 31124010 DOI: 10.1007/s10334-019-00752-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 04/29/2019] [Accepted: 05/07/2019] [Indexed: 10/26/2022]
Abstract
OBJECTIVES An approach is presented for high-field MRI studies of the cardiovascular system (CVS) of a marine crustacean, the edible crab Cancer pagurus, submerged in highly conductive seawater. MATERIALS AND METHODS Structure and function of the CVS were investigated at 9.4 T. Cardiac motion was studied using self-gated CINE MRI. Imaging protocols and radio-frequency coil arrangements were tested for anatomical imaging. Haemolymph flow was quantified using phase-contrast angiography. Signal-to-noise-ratios and flow velocities in afferent and efferent branchial veins were compared with Student's t test (n = 5). RESULTS Seawater induced signal losses were dependent on imaging protocols and RF coil setup. Internal cardiac structures could be visualized with high spatial resolution within 8 min using a gradient-echo technique. Variations in haemolymph flow in different vessels could be determined over time. Maximum flow was similar within individual vessels and corresponded to literature values from Doppler measurements. Heart contractions were more pronounced in lateral and dorso-ventral directions than in the anterior-posterior direction. DISCUSSION Choosing adequate imaging protocols in combination with a specific RF coil arrangement allows to monitor various parts of the crustacean CVS with exceptionally high spatial resolution despite the adverse effects of seawater at 9.4 T.
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Nischik ES, Krieger J. Evaluation of standard imaging techniques and volumetric preservation of nervous tissue in genetically identical offspring of the crayfish Procambarus fallax cf. virginalis (Marmorkrebs). PeerJ 2018; 6:e5181. [PMID: 30018856 PMCID: PMC6044273 DOI: 10.7717/peerj.5181] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 06/18/2018] [Indexed: 01/24/2023] Open
Abstract
In the field of comparative neuroanatomy, a meaningful interspecific comparison demands quantitative data referring to method-specific artifacts. For evaluating the potential of state-of-the-art imaging techniques in arthropod neuroanatomy, micro-computed X-ray microscopy (μCT) and two different approaches using confocal laser-scanning microscopy (cLSM) were applied to obtain volumetric data of the brain and selected neuropils in Procambarus fallax forma virginalis (Crustacea, Malacostraca, Decapoda). The marbled crayfish P. fallax cf. virginalis features a parthogenetic reproduction generating genetically identical offspring from unfertilized eggs. Therefore, the studied organism provides ideal conditions for the comparative analysis of neuroanatomical imaging techniques and the effect of preceding sample preparations of nervous tissue. We found that wet scanning of whole animals conducted with μCT turned out to be the least disruptive method. However, in an additional experiment it was discovered that fixation in Bouin’s solution, required for μCT scans, resulted in an average tissue shrinkage of 24% compared to freshly dissected and unfixed brains. The complete sample preparation using fixation in half-strength Karnovsky’s solution of dissected brains led to an additional volume decrease of 12.5%, whereas the preparation using zinc-formaldehyde as fixative resulted in a shrinkage of 5% in comparison to the volumes obtained by μCT. By minimizing individual variability, at least for aquatic arthropods, this pioneer study aims for the inference of method-based conversion factors in the future, providing a valuable tool for reducing quantitative neuroanatomical data already published to a common denominator. However, volumetric deviations could be shown for all experimental protocols due to methodological noise and/or phenotypic plasticity among genetically identical individuals. MicroCT using undried tissue is an appropriate non-disruptive technique for allometry of arthropod brains since spatial organ relationships are conserved and tissue shrinkage is minimized. Collecting tissue-based shrinkage factors according to specific sample preparations might allow a better comparability of volumetric data from the literature, even if another technique was applied.
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Affiliation(s)
- Emanuel S Nischik
- Zoological Institute and Museum, Cytology and Evolutionary Biology, University of Greifswald, Greifswald, Germany
| | - Jakob Krieger
- Zoological Institute and Museum, Cytology and Evolutionary Biology, University of Greifswald, Greifswald, Germany
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Knebel D, Assaf Y, Ayali A. The use of MEMRI for monitoring central nervous system activity during intact insect walking. JOURNAL OF INSECT PHYSIOLOGY 2018; 108:48-53. [PMID: 29758239 DOI: 10.1016/j.jinsphys.2018.05.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 05/10/2018] [Accepted: 05/11/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND Monitoring neuronal activity in the intact behaving animal is most desired in neuroethological research, yet it is rarely straightforward or even feasible. Here we present the use of manganese enhanced magnetic resonance imaging (MEMRI), a technique allowing monitoring the activity of an animal's nervous system during specific behavioral patterns. Using MEMRI we were able to show activity in different ganglia of the central nervous system of intact locusts during walking. RESULTS We injected two groups of locusts with manganese, which serves as a magnetic contrast agent. One group was forced to walk on a treadmill for two hours, while the other was immobilized and served as a control. Subsequently, all animals were scanned in a T1 MRI protocol, and the accumulation of manganese in the neuronal tissues that were active during walking was demonstrated by comparing the scans of the two groups. Two neuronal sites showed significantly higher T1 signal in the walking locusts compared to the immobilized ones: the prothoracic ganglion, which locally controls the front legs, and the subesophageal ganglion, a head ganglion which takes part in initiation and maintenance of walking. CONCLUSION MEMRI is a potent, non-invasive technique for monitoring neuronal activity in intact locusts, and arthropods in general. Specifically, it provides a promising way for revealing the role of central and high-order neuronal structures in motor behaviors such as walking.
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Affiliation(s)
- Daniel Knebel
- School of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
| | - Yaniv Assaf
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel; Department of Neurobiology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Amir Ayali
- School of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
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Svehla P, Bédécarrats A, Jahn C, Nargeot R, Ciobanu L. Intracellular manganese enhanced MRI signals reflect the frequency of action potentials in Aplysia neurons. J Neurosci Methods 2017; 295:121-128. [PMID: 29248445 DOI: 10.1016/j.jneumeth.2017.12.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 12/12/2017] [Accepted: 12/13/2017] [Indexed: 01/05/2023]
Abstract
BACKGROUND Manganese-enhanced magnetic resonance imaging (MEMRI) is an increasingly popular alternative to standard functional MRI methods in animal studies. The contrast in MEMRI images is based on the accumulation of Mn2+ ions inside neurons, and, since manganese can serve as calcium analogue, this accumulation reflects calcium dynamics providing versatile information about brain neuroarchitecture and functionality. However, despite its use as a functional imaging tool, the exact relationship between the MEMRI signal and neuronal activity remains elusive. NEW METHOD In order to better understand the mechanisms underlying Mn2+ accumulation resulting in MEMRI signal enhancement we investigated single neuron responses of isolated Aplysia buccal ganglia subjected to chemical (dopamine) or electrical stimulation of an input nerve (oesophageal nerve). The elicited electrical activity that represents a fictive feeding was recorded with electrophysiological methods and the Mn2+ uptake in individual neurons was evaluated with MEMRI at 17.2T. RESULTS & COMPARISON WITH EXISTING METHOD(S) We show a positive correlation between bursts of electrical activity and MEMRI signal intensity in identified neurons and demonstrate that the MEMRI signal reflects mainly fast and high membrane depolarization processes such as action potentials, and it is not sensitive to slow and small membrane depolarizations, such as post-synaptic potentials.
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Affiliation(s)
- Pavel Svehla
- NeuroSpin, CEA Saclay, 91191 Gif-sur-Yvette, France; University Paris-Sud, XI, 91450 Orsay, France
| | | | | | - Romuald Nargeot
- University of Bordeaux, INCIA, UMR 5287, F-33000 Bordeaux, France
| | - Luisa Ciobanu
- NeuroSpin, CEA Saclay, 91191 Gif-sur-Yvette, France.
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Abstract
Neoplasia is a documented occurrence across invertebrate taxa, but challenges remain with regard to tumor diagnosis and treatment. Literature reports of neoplasia are frequent in mollusks and insects, infrequent in Cnidaria and crustaceans, and are yet to be documented in Porifera and echinoderms. A significant contribution could be made by veterinary practitioners documenting and treating neoplasms in invertebrates. Traditional methods of veterinary diagnosis are encouraged, but the anatomy and tissue biology of each invertebrate species need to be considered. Most neoplasms described in the invertebrate literature have been considered benign, making external lesions potentially amenable to surgical resection.
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Köhnk S, Baudewig J, Brandis D, Boretius S. What's in this crab? MRI providing high-resolution three-dimensional insights into recent finds and historical collections of Brachyura. ZOOLOGY 2016; 121:1-9. [PMID: 27955955 DOI: 10.1016/j.zool.2016.11.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Revised: 09/26/2016] [Accepted: 11/21/2016] [Indexed: 11/30/2022]
Abstract
Museum collections may be viewed as a unique window onto the diversity and the functional evolution of species on earth. Detailed information about the inner structure of many precious collectors' items is, however, difficult to gain without destruction of the objects of interest. Here we applied magnetic resonance imaging (MRI) to freshly fixed as well as century-old museum specimens and compared the effects of fixative (formalin, ethanol, mercury chloride) on the image quality. Three-dimensional (3D) reconstruction of MRI was exemplarily used to non-invasively visualize anatomical structures of the brachyuran species Ilia nucleus, Ozius guttatus and Austinograea williamsi. Moreover, the potential of combining MRI and micro-computed tomography (μCT) was exemplarily analyzed for O. guttatus. The best MRI quality was achieved with formalin fixation and this also applied to specimens more than 100 years old. For specimens with a straight carapace width of about 30mm, an isotropic spatial resolution of 100μm allowed for the delineation of all major organ systems such as the nervous system, the gastrointestinal tract, the reproductive system and the heart. Moreover, combining MRI and μCT revealed new insights into the interaction of the heart and surrounding skeletal structures. As examples of its potential, MRI of a specimen of O. guttatus showed a very rare double infection with bopyrid isopods and 3D reconstruction of the reproductive tract of A. williamsi revealed a remarkable size of the ovaries as well as a shape and orientation of the seminal receptacles unusual for brachyurans. Thus, MRI may open up extensive possibilities to study evolutionary and ecological questions by utilizing the immense wealth of natural historical collections without any destruction of the items.
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Affiliation(s)
- Stephanie Köhnk
- Zoological Museum, University of Kiel, Hegewischstraße 3, D-24105 Kiel, Germany
| | - Jürgen Baudewig
- Molecular Imaging North Competence Center, Department of Radiology and Neuroradiology, University of Kiel, Am Botanischen Garten 41, D-24118 Kiel, Germany; German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, D-37077 Göttingen, Germany
| | - Dirk Brandis
- Zoological Museum, University of Kiel, Hegewischstraße 3, D-24105 Kiel, Germany
| | - Susann Boretius
- Molecular Imaging North Competence Center, Department of Radiology and Neuroradiology, University of Kiel, Am Botanischen Garten 41, D-24118 Kiel, Germany; German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, D-37077 Göttingen, Germany.
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Heikkilä M, Mutanen M, Wahlberg N, Sihvonen P, Kaila L. Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera). BMC Evol Biol 2015; 15:260. [PMID: 26589618 PMCID: PMC4654798 DOI: 10.1186/s12862-015-0520-0] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 10/26/2015] [Indexed: 11/21/2022] Open
Abstract
BACKGROUND Ditrysia comprise close to 99 % of all butterflies and moths. The evolutionary relationships among the ditrysian superfamilies have received considerable attention in phylogenetic studies based on DNA and transcriptomic data, but the deepest divergences remain for large parts unresolved or contradictory. To obtain complementary insight into the evolutionary history of the clade, and to test previous hypotheses on the subdivision of Ditrysia based on morphology, we examine the morphology of larvae, pupae and adult males and females of 318 taxa representing nearly all ditrysian superfamilies and families. We present the most comprehensive morphological dataset on Ditrysia to date, consisting of over 500 morphological characters. The data are analyzed alone and combined with sequence data (one mitochondrial and seven nuclear protein-coding gene regions, sequenced from 422 taxa). The full dataset consists of 473 exemplar species. Analyses are performed using maximum likelihood methods, and parsimony methods for the morphological dataset. We explore whether combining morphological data and DNA-data can stabilize taxa that are unstable in phylogenetic studies based on genetic data only. RESULTS Morphological characters are found phylogenetically informative in resolving apical nodes (superfamilies and families), but characters serving as evidence of relatedness of larger assemblages are few. Results include the recovery of a monophyletic Tineoidea, Sesioidea and Cossoidea, and a stable position for some unstable taxa (e.g. Epipyropidae, Cyclotornidae, Urodoidea + Schreckensteinioidea). Several such taxa, however, remain unstable even though morphological characters indicate a position in the tree (e.g. Immidae). Evidence supporting affinities between clades are suggested, e.g. a novel larval synapomorphy for Tineidae. We also propose the synonymy of Tineodidae with Alucitidae, syn. nov. CONCLUSIONS The large morphological dataset provides information on the diversity and distribution of morphological traits in Ditrysia, and can be used in future research on the evolution of these traits, in identification keys and in identification of fossil Lepidoptera. The "backbone" of the phylogeny for Ditrysia remains largely unresolved. As previously proposed as an explanation for the scarcity of molecular signal in resolving the deeper nodes, this may be due to the rapid radiation of Ditrysia in the Cretaceous.
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Affiliation(s)
- Maria Heikkilä
- Finnish Museum of Natural History, Zoology Unit, University of Helsinki, PO Box 17, Helsinki, 00014, Finland.
| | - Marko Mutanen
- Department of Genetics and Physiology, University of Oulu, PO Box 3000, Oulu, 90014, Finland.
| | - Niklas Wahlberg
- Laboratory of Genetics, Department of Biology, University of Turku, Turku, 20014, Finland.
- Department of Biology, Lund University, 223 62, Lund, Sweden.
| | - Pasi Sihvonen
- University of Helsinki, Research Affairs, PO Box 33, Helsinki, 00014, Finland.
| | - Lauri Kaila
- Finnish Museum of Natural History, Zoology Unit, University of Helsinki, PO Box 17, Helsinki, 00014, Finland.
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Seo E, Ohishi K, Maruyama T, Imaizumi-Ohashi Y, Murakami M, Seo Y. Magnetic resonance imaging analysis of water flow in the mantle cavity of live Mytilus galloprovincialis. ACTA ACUST UNITED AC 2015; 217:2277-87. [PMID: 25141344 DOI: 10.1242/jeb.101949] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Water flow inside the shell of Mytilus galloprovincialis was measured by phase-contrast magnetic resonance imaging (MRI). In seawater without algal cells at 23 °C, water approached the mussel from the posterior-ventral side, and entered through the inhalant aperture at a velocity of 40-20 mm s(-1). The flow rate in the lower mantle cavity decreased to 10-20 mm s(-1), the water flowed in the anterior-dorsal direction and approached the demibranches at a velocity of 5-10 mm s(-1). After passing through the lamellae to the upper mantle cavity, the water stretched the interlamellar cavity, turned to the posterior-dorsal direction and accumulated in the epibranchial cavity. The water flows came together at the ventral side of the posterior adductor muscle. The velocity increased more to than 50 mm s(-1) in the exhalant siphon, and exhaled out in the posterior-dorsal direction. The anterior-posterior direction of the flow was imaged every 1.92 s by the inflow effect of T1-weighted MRI. The flow seemed to be constant, and no cyclic motion of the mantles or the gills was detected. Spontaneous closure of the shells caused a quick drop of the flow in the mantle cavity. In the opening process of the shells, water flow in the interlamellar cavities increased before the opening, followed by an increase of flows in the exhalant siphon and inhalant aperture with minimum delay, reaching a plateau within 1 min of the shells opening. This provides direct evidence that the lateral cilia drive water in the mussel M. galloprovincialis.
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Affiliation(s)
- Eriko Seo
- Department of Marine Ecosystem Dynamics, Division of Marine Life Science, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan
| | - Kazue Ohishi
- Marine Biodiversity Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology, Yokosuka, 237-0061, Japan
| | - Tadashi Maruyama
- Marine Biodiversity Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology, Yokosuka, 237-0061, Japan
| | - Yoshie Imaizumi-Ohashi
- Department of Regulatory Physiology, Dokkyo Medical University School of Medicine, Tochigi, 321-0293, Japan
| | - Masataka Murakami
- Department of Molecular Physiology, National Institute for Physiological Sciences, Okazaki, 444-8787, Japan
| | - Yoshiteru Seo
- Department of Regulatory Physiology, Dokkyo Medical University School of Medicine, Tochigi, 321-0293, Japan
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Functional magnetic resonance microscopy at single-cell resolution in Aplysia californica. Proc Natl Acad Sci U S A 2014; 111:8667-72. [PMID: 24872449 DOI: 10.1073/pnas.1403739111] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In this work, we show the feasibility of performing functional MRI studies with single-cell resolution. At ultrahigh magnetic field, manganese-enhanced magnetic resonance microscopy allows the identification of most motor neurons in the buccal network of Aplysia at low, nontoxic Mn(2+) concentrations. We establish that Mn(2+) accumulates intracellularly on injection into the living Aplysia and that its concentration increases when the animals are presented with a sensory stimulus. We also show that we can distinguish between neuronal activities elicited by different types of stimuli. This method opens up a new avenue into probing the functional organization and plasticity of neuronal networks involved in goal-directed behaviors with single-cell resolution.
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Seo E, Ohishi K, Maruyama T, Imaizumi-Ohashi Y, Murakami M, Seo Y. Testing the constant-volume hypothesis by magnetic resonance imaging of Mytilus galloprovincialis heart. ACTA ACUST UNITED AC 2014; 217:964-73. [PMID: 24311801 DOI: 10.1242/jeb.092577] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The constant-volume (CV) hypothesis was tested using the Mytilus galloprovincialis heart under two conditions. The volume of the ventricle, auricles and pericardium, and the flow in the heart and adjacent vessels were measured by magnetic resonance imaging. In synthetic seawater at 23°C (immersed condition), the end-diastolic volume (EDV), end-systolic volume (ESV) and stroke volume (SV) were 50%, 21% and 29% of the heart volume, respectively, and the auricle volume (VA) was maximized at end-systole. Assuming a constant volume of the heart, venous return to the auricles (IV) was constant, and out-flow from the pericardium to the kidney (IPK) was 2/3 of SV. During aerial exposure (emersed condition), EDV, ESV and SV decreased to 33%, 22% and 11%, respectively. VA was maximized at end-diastole and associated with the decrease of systolic IV to 1/2 of diastolic IV, while IPK remained at 80% of the immersed condition. Based on these results--in addition to two postulates of the CV hypothesis: (1) the total volume of the heart is always the same, and (2) ventricle contraction causes a decrease in pressure in the pericardium--we modified two postulates: (3) the low pericardial pressure maintains venous return from the anterior oblique vein to the auricle, and (4) the pressure difference between the auricle and the pericardium drives haemolymph filtration through the auricle walls. We also added a new postulate: (5) dilatation of the ventricle is associated with the haemolymph output to the kidney via the renopericardial canals.
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Affiliation(s)
- Eriko Seo
- Department of Marine Ecosystem Dynamics, Division of Marine Life Science, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa 277-8564, Japan
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Highlighting manganese dynamics in the nervous system of Aplysia californica using MEMRI at ultra-high field. Neuroimage 2013; 76:264-71. [PMID: 23523801 DOI: 10.1016/j.neuroimage.2013.03.022] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2012] [Revised: 03/07/2013] [Accepted: 03/09/2013] [Indexed: 11/20/2022] Open
Abstract
Exploring the pathways of manganese (Mn(2+)) transport in the nervous system becomes of interest as many recent studies use Mn(2+) as a neural tract tracer in mammals. In this study, we performed manganese enhanced MRI (MEMRI) at 17.2 T on the buccal ganglia of Aplysia californica. The main advantage of this model over mammalian systems is that it contains networks of large identified neurons. Using Mn(2+) retrograde transport along selected nerves, we first validated the mapping of motor neurons' axonal projections into peripheral nerves, previously obtained from optical imaging (Morton et al., 1991). This protocol was found not to alter the functional properties of the neuronal network. Second, we compared the Mn(2+) dynamics inside the ganglia in the presence or absence of chemical stimulation. We found that 2h of stimulation with the modulatory transmitter dopamine increased the extent of areas of intermediate signal enhancement caused by manganese accumulation. In the absence of dopamine, an overall decrease of the enhanced areas in favor of non-enhanced areas was found, as a result of natural Mn(2+) washout. This supports the hypothesis that, upon activation, Mn(2+) is released from labeled neurons and captured by other, initially unlabeled, neurons. However, the latter could not be clearly identified due to lack of sensitivity and multiplicity of possible pathways starting from labeled cells. Nonetheless, the Aplysia buccal ganglia remain a well-suited model for attempting to visualize Mn(2+) transport from neuron to neuron upon activation, as well as for studying dopaminergic modulation in a motor network.
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Otopalik AG, Shin J, Beltz BS, Sandeman DC, Kolodny NH. Differential uptake of MRI contrast agents indicates charge-selective blood-brain interface in the crayfish. Cell Tissue Res 2012; 349:493-503. [DOI: 10.1007/s00441-012-1413-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2011] [Accepted: 03/19/2012] [Indexed: 11/28/2022]
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Berquist RM, Gledhill KM, Peterson MW, Doan AH, Baxter GT, Yopak KE, Kang N, Walker HJ, Hastings PA, Frank LR. The Digital Fish Library: using MRI to digitize, database, and document the morphological diversity of fish. PLoS One 2012; 7:e34499. [PMID: 22493695 PMCID: PMC3321017 DOI: 10.1371/journal.pone.0034499] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2011] [Accepted: 03/02/2012] [Indexed: 01/01/2023] Open
Abstract
Museum fish collections possess a wealth of anatomical and morphological data that are essential for documenting and understanding biodiversity. Obtaining access to specimens for research, however, is not always practical and frequently conflicts with the need to maintain the physical integrity of specimens and the collection as a whole. Non-invasive three-dimensional (3D) digital imaging therefore serves a critical role in facilitating the digitization of these specimens for anatomical and morphological analysis as well as facilitating an efficient method for online storage and sharing of this imaging data. Here we describe the development of the Digital Fish Library (DFL, http://www.digitalfishlibrary.org), an online digital archive of high-resolution, high-contrast, magnetic resonance imaging (MRI) scans of the soft tissue anatomy of an array of fishes preserved in the Marine Vertebrate Collection of Scripps Institution of Oceanography. We have imaged and uploaded MRI data for over 300 marine and freshwater species, developed a data archival and retrieval system with a web-based image analysis and visualization tool, and integrated these into the public DFL website to disseminate data and associated metadata freely over the web. We show that MRI is a rapid and powerful method for accurately depicting the in-situ soft-tissue anatomy of preserved fishes in sufficient detail for large-scale comparative digital morphology. However these 3D volumetric data require a sophisticated computational and archival infrastructure in order to be broadly accessible to researchers and educators.
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Affiliation(s)
- Rachel M. Berquist
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Kristen M. Gledhill
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Matthew W. Peterson
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Allyson H. Doan
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Gregory T. Baxter
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Kara E. Yopak
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - Ning Kang
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
| | - H. J. Walker
- Marine Vertebrate Collection and Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America
| | - Philip A. Hastings
- Marine Vertebrate Collection and Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America
| | - Lawrence R. Frank
- Center for Scientific Computation in Imaging, University of California San Diego, La Jolla, California, United States of America
- Center for Functional Magnetic Resonance Imaging, University of California San Diego, La Jolla, California, United States of America
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Ziegler A, Kunth M, Mueller S, Bock C, Pohmann R, Schröder L, Faber C, Giribet G. Application of magnetic resonance imaging in zoology. ZOOMORPHOLOGY 2011. [DOI: 10.1007/s00435-011-0138-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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15
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Herberholz J, Mishra SH, Uma D, Germann MW, Edwards DH, Potter K. Non-invasive imaging of neuroanatomical structures and neural activation with high-resolution MRI. Front Behav Neurosci 2011; 5:16. [PMID: 21503138 PMCID: PMC3071494 DOI: 10.3389/fnbeh.2011.00016] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2011] [Accepted: 03/18/2011] [Indexed: 11/13/2022] Open
Abstract
Several years ago, manganese-enhanced magnetic resonance imaging (MEMRI) was introduced as a new powerful tool to image active brain areas and to identify neural connections in living, non-human animals. Primarily restricted to studies in rodents and later adapted for bird species, MEMRI has recently been discovered as a useful technique for neuroimaging of invertebrate animals. Using crayfish as a model system, we highlight the advantages of MEMRI over conventional techniques for imaging of small nervous systems. MEMRI can be applied to image invertebrate nervous systems at relatively high spatial resolution, and permits identification of stimulus-evoked neural activation non-invasively. Since the selection of specific imaging parameters is critical for successful in vivo micro-imaging, we present an overview of different experimental conditions that are best suited for invertebrates. We also compare the effects of hardware and software specifications on image quality, and provide detailed descriptions of the steps necessary to prepare animals for successful imaging sessions. Careful consideration of hardware, software, experiments, and specimen preparation will promote a better understanding of this novel technique and facilitate future MEMRI studies in other laboratories.
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Affiliation(s)
- Jens Herberholz
- Department of Psychology, University of Maryland College Park, MD, USA
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Analysis of freshly fixed and museum invertebrate specimens using high-resolution, high-throughput MRI. Methods Mol Biol 2011; 771:633-51. [PMID: 21874501 DOI: 10.1007/978-1-61779-219-9_32] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Magnetic resonance imaging (MRI) is now considered a routine tool for comparative morphological imaging in small vertebrate model organisms. However, the application of high-resolution imaging protocols to visualize the anatomy of invertebrate organisms has not yet become a generally accepted tool among zoologists. Here, we describe MRI protocols that permit visualization of both the internal and the external anatomy of freshly fixed invertebrates and specimens from museum collections. The choice of protocols has been optimized to allow the assembly of the large numbers of datasets that are necessary for comparative morphological analyses. Although the primary focus of our work is on sea urchin internal anatomy, we also present results from a variety of other invertebrate taxa to demonstrate the principal feasibility of MRI studies to obtain anatomical information at high resolutions. Furthermore, we briefly describe procedures suitable for 3D modelling.
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Edirisinghe EPNS, Apalkov VM, Cymbalyuk GS. The anomalous effect of surface diffusion on the nuclear magnetic resonance signal in restricted geometry. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:145304. [PMID: 21389527 DOI: 10.1088/0953-8984/22/14/145304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Anisotropy of diffusion properties in a specimen plays a key role in numerous applications of nuclear magnetic resonance (NMR) imaging, like non-invasive tracking of fibers in the central nervous system. We suggest that contrasting fiber structures with certain diameters could be improved if second-order effects are taken into account. We introduce a procedure consisting of two standard diffusion NMR experiments differing in their gradient pulse characteristics. These two echo signals will be called the background and principal signals. We show that the difference obtained by subtracting one echo signal from the other has either typical or anomalous properties. In the typical case, as the duration of the gradient pulse in the second experiment is set to smaller and smaller values, the difference from the background echo signal tends toward its maximum. In contrast, in the anomalous case the difference between the background and the principal signals has a maximum at a certain nonzero duration of the pulse in the second experiment. This critical duration is determined by different characteristics, including the diameters of fibers. For this anomalous effect to take place the fast surface diffusion channel coupled to the surrounding media is required. The diffusion of magnetic molecules along the surface of restricted media and the coupling of the surface and the bulk translational motions can strongly modify the echo attenuation NMR signal. The origin of this strong anomalous effect is the change of the symmetry of the lowest diffusion eigenmode of the system. We illustrate the effect of surface diffusion for a cylindrically symmetric system and describe the experimental conditions under which the anomalous behavior of the echo signals can be observed.
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Affiliation(s)
- E P N S Edirisinghe
- Department of Physics and Astronomy, Georgia State University, Atlanta, GA 30303, USA
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18
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Hobbs KH, Hooper SL. High-resolution computed tomography of lobster (Panulirus interruptus) stomach. J Morphol 2010; 270:1029-41. [PMID: 19274746 DOI: 10.1002/jmor.10740] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
We used micro computed tomography to produce a high-resolution density image of the lobster (Panulirus interruptus) stomach and identified on this image the previously defined stomach ossicles. These data are the first coordinate-based, three-dimensional description of the stomach and are a necessary first step for developing biomechanical models of it. They are also interesting for several reasons in their own right. First, the ossicles showed large shape and density variations. These data suggest that different ossicles may serve different functions, with some acting as force-delivering levers, some as spring-like elements, and some as wall-like elements that resist internal stomach pressure or function as two-dimensional force-delivering plates. Second, large intra-ossicle density variations were present in individual ossicles, reminiscent of I-beams, oval bicycle frames, and similar mass-minimizing structural elements, suggesting that evolution has minimized ossicle mass and identifying which ossicle regions are most likely important in force delivery. Third, joints appeared to be either continuous density interconnections without distinct separations between the ossicles or 'floating' joints in which the ends of the two ossicles were separated by relatively large distances spanned by connective tissue. In these latter joints, although the distance between ossicle ends is likely maintained at a relatively constant value, a wide range of ossicle angles would thus be theoretically possible. Notably absent are close-apposition, morphologically specialized joints such as hinge or ball-and-socket joints.
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Affiliation(s)
- Kevin H Hobbs
- Department of Biological Sciences, Irvine Hall, Ohio University, Athens, Ohio 45701, USA
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19
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Giribet G. A new dimension in combining data? The use of morphology and phylogenomic data in metazoan systematics. ACTA ZOOL-STOCKHOLM 2010. [DOI: 10.1111/j.1463-6395.2009.00420.x] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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20
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Yu HJ, Yamaguchi A. Endogenous serotonin acts on 5-HT2C-like receptors in key vocal areas of the brain stem to initiate vocalizations in Xenopus laevis. J Neurophysiol 2009; 103:648-58. [PMID: 19955293 DOI: 10.1152/jn.00827.2009] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Serotonin initiates various rhythmic behaviors in vertebrates. Previously we have shown that serotonergic neurons innervate the central vocal pathway in the African clawed frog (Xenopus laevis). We also discovered that exogenous serotonin applied to isolated brains in vitro activates fictive vocalizations by activating 5-HT(2C)-like receptors. In this study, we examined the location of 5-HT(2C)-like receptors and determined whether endogenously released serotonin also initiates vocalizations by activating 5-HT(2C)-like receptors in male Xenopus brains. To this end, we first identified the specific location of 5-HT(2C)-like receptors using immunohistochemistry. We next examined which of the populations of neurons that express 5-HT(2C)-like receptors are functionally relevant for initiating fictive vocalizations by applying a 5-HT(2C) receptor agonist to brains transected at various levels. Of four populations of immunopositive neurons, we showed that 5-HT(2C)-like receptors located in two areas of the brain stem vocal circuit, the raphe nucleus and motor nucleus IX-X, initiate fictive vocalizations. We next showed that endogenous serotonin can also activate fictive vocalizations by increasing the extracellular concentration of endogenous serotonin using a selective serotonin reuptake inhibitor (SSRI). The SSRI-induced vocal initiation is also mediated by activation of 5-HT(2C)-like receptors because blockade of these receptors prevents fictive vocalization. The results suggest that in vivo release of serotonin initiates male vocalizations by activating 5-HT(2C)-like receptors in the brain stem vocal nuclei.
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Affiliation(s)
- Heather J Yu
- Department of Biology, Boston University, Boston, Massachusetts 02215, USA.
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21
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Ziegler A, Faber C, Mueller S, Bartolomaeus T. Systematic comparison and reconstruction of sea urchin (Echinoidea) internal anatomy: a novel approach using magnetic resonance imaging. BMC Biol 2008; 6:33. [PMID: 18651948 PMCID: PMC2500006 DOI: 10.1186/1741-7007-6-33] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2008] [Accepted: 07/23/2008] [Indexed: 11/30/2022] Open
Abstract
Background Traditional comparative morphological analyses and subsequent three-dimensional reconstructions suffer from a number of drawbacks. This is particularly evident in the case of soft tissue studies that are technically demanding, time-consuming, and often prone to produce artefacts. These problems can partly be overcome by employing non-invasive, destruction-free imaging techniques, in particular micro-computed tomography or magnetic resonance imaging. Results Here, we employed high-field magnetic resonance imaging techniques to gather numerous data from members of a major marine invertebrate taxon, the sea urchins (Echinoidea). For this model study, 13 of the 14 currently recognized high-ranking subtaxa (orders) of this group of animals were analyzed. Based on the acquired datasets, interactive three-dimensional models were assembled. Our analyses reveal that selected soft tissue characters can even be used for phylogenetic inferences in sea urchins, as exemplified by differences in the size and shape of the gastric caecum found in the Irregularia. Conclusion The main focus of our investigation was to explore the possibility to systematically visualize the internal anatomy of echinoids obtained from various museum collections. We show that, in contrast to classical preparative procedures, magnetic resonance imaging can give rapid, destruction-free access to morphological data from numerous specimens, thus extending the range of techniques available for comparative studies of invertebrate morphology.
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Affiliation(s)
- Alexander Ziegler
- Institut für Biologie, Freie Universität Berlin, Königin-Luise-Strasse, 14195 Berlin, Germany.
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22
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Ribi W, Senden TJ, Sakellariou A, Limaye A, Zhang S. Imaging honey bee brain anatomy with micro-X-ray-computed tomography. J Neurosci Methods 2008; 171:93-7. [PMID: 18400304 DOI: 10.1016/j.jneumeth.2008.02.010] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2007] [Revised: 02/15/2008] [Accepted: 02/22/2008] [Indexed: 10/22/2022]
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Clarac F, Pearlstein E. Invertebrate preparations and their contribution to neurobiology in the second half of the 20th century. ACTA ACUST UNITED AC 2007; 54:113-61. [PMID: 17500093 DOI: 10.1016/j.brainresrev.2006.12.007] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
This review summarized the contribution to neurobiology achieved through the use of invertebrate preparations in the second half of the 20th century. This fascinating period was preceded by pioneers who explored a wide variety of invertebrate phyla and developed various preparations appropriate for electrophysiological studies. Their work advanced general knowledge about neuronal properties (dendritic, somatic, and axonal excitability; pre- and postsynaptic mechanisms). The study of invertebrates made it possible to identify cell bodies in different ganglia, and monitor their operation in the course of behavior. In the 1970s, the details of central neural circuits in worms, molluscs, insects, and crustaceans were characterized for the first time and well before equivalent findings were made in vertebrate preparations. The concept and nature of a central pattern generator (CPG) have been studied in detail, and the stomatogastric nervous system (STNS) is a fine example, having led to many major developments since it was first examined. The final part of the review is a discussion of recent neuroethological studies that have addressed simple cognitive functions and confirmed the utility of invertebrate models. After presenting our invertebrate "mice," the worm Caenorhabditis elegans and the fruit fly Drosophila melanogaster, our conclusion, based on arguments very different from those used fifty years ago, is that invertebrate models are still essential for acquiring insight into the complexity of the brain.
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Affiliation(s)
- François Clarac
- P3M, CNRS, Université de la Méditerranée, Marseille, France.
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Watanabe T, Schachtner J, Krizan M, Boretius S, Frahm J, Michaelis T. Manganese-enhanced 3D MRI of established and disrupted synaptic activity in the developing insect brain in vivo. J Neurosci Methods 2007; 158:50-5. [PMID: 16766041 DOI: 10.1016/j.jneumeth.2006.05.012] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2006] [Revised: 05/03/2006] [Accepted: 05/05/2006] [Indexed: 10/24/2022]
Abstract
The antennal lobe of the sphinx moth Manduca sexta serves as a model for the development of the olfactory system. Here, the establishment of the glomerular synaptic network formed by the olfactory receptor axons and antennal lobe neurons at pupal stage P12 was followed by transection of the right antenna and - within 24 h - by injection of MnCl2 into the hemolymph. In vivo 3D MRI at 100 and 60 microm isotropic resolution was then performed at P13 to P17. Whereas the left antennal lobe revealed a pronounced increase of the signal-to-noise ratio (SNR) reflecting normal synaptic activity, the observation of only a small SNR increase within the right antennal lobe indicated the disruption of pertinent activity after antennal transection. The accumulation of manganese in the intact antennal system became observable within 3 h and lasted for at least 2 days after injection. Intra-individual comparisons between the right and left side yielded a statistically significant differential SNR increase in the left antennal lobe. Because such an effect was not observed in younger animals studied at pupal stages P10/P11, the MRI findings confirm the development of functional synapses in the antennal lobe of Manduca sexta by P13.
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Affiliation(s)
- Takashi Watanabe
- Biomedizinische NMR Forschungs GmbH, Max-Planck-Institut für biophysikalische Chemie, 37070 Göttingen, Germany.
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Powell KR, Albers HE. Center for Behavioral Neuroscience: a prototype multi-institutional collaborative research center. JOURNAL OF BIOMEDICAL DISCOVERY AND COLLABORATION 2006; 1:9. [PMID: 16846500 PMCID: PMC1557540 DOI: 10.1186/1747-5333-1-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2006] [Accepted: 07/17/2006] [Indexed: 11/24/2022]
Abstract
The Center for Behavioral Neuroscience was launched in the fall of 1999 with support from the National Science Foundation, the Georgia Research Alliance, and our eight participating institutions (Georgia State University, Emory University, Georgia Institute of Technology, Morehouse School of Medicine, Clark-Atlanta University, Spelman College, Morehouse College, Morris Brown College). The CBN provides the resources to foster innovative research in behavioral neuroscience, with a specific focus on the neurobiology of social behavior. Center faculty working in collaboratories use diverse model systems from invertebrates to humans to investigate fear, aggression, affiliation, and reproductive behaviors. The addition of new research foci in reward and reinforcement, memory and cognition, and sex differences has expanded the potential for collaborations among Center investigators. Technology core laboratories develop the molecular, cellular, systems, behavioral, and imaging tools essential for investigating how the brain influences complex social behavior and, in turn, how social experience influences brain function. In addition to scientific discovery, a major goal of the CBN is to train the next generation of behavioral neuroscientists and to increase the number of women and under-represented minorities in neuroscience. Educational programs are offered for K-12 students to spark an interest in science. Undergraduate and graduate initiatives encourage students to participate in interdisciplinary and inter-institutional programs, while postdoctoral programs provide a bridge between laboratories and allow the interdisciplinary research and educational ventures to flourish. Finally, the CBN is committed to knowledge transfer, partnering with community organizations to bring neuroscience to the public. This multifaceted approach through research, education, and knowledge transfer will have a major impact on how we study interactions between the brain and behavior, as well as how the public views brain function and neuroscience.
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Affiliation(s)
- Kelly R Powell
- Center for Behavioral Neuroscience, Georgia State University, P.O. Box 3966, Atlanta, Georgia 30302-3966, USA
| | - H Elliott Albers
- Center for Behavioral Neuroscience, Georgia State University, P.O. Box 3966, Atlanta, Georgia 30302-3966, USA
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Brinkley CK, Kolodny NH, Kohler SJ, Sandeman DC, Beltz BS. Magnetic resonance imaging at 9.4 T as a tool for studying neural anatomy in non-vertebrates. J Neurosci Methods 2005; 146:124-32. [PMID: 15935229 DOI: 10.1016/j.jneumeth.2005.02.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2004] [Revised: 02/02/2005] [Accepted: 02/02/2005] [Indexed: 10/25/2022]
Abstract
This report describes magnetic resonance imaging (MRI) methods we have developed at 9.4 T for observing internal organs and the nervous system of an invertebrate organism, the crayfish, Cherax destructor. We have compared results acquired using two different pulse sequences, and have tested manganese (Mn(2+)) as an agent to enhance contrast of neural tissues in this organism. These techniques serve as a foundation for further development of functional MRI and neural tract-tracing methods in non-vertebrate systems.
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Affiliation(s)
- Catherine K Brinkley
- Department of Biological Sciences, 106 Central Street, Wellesley College, Wellesley, MA 02481, USA
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van Bergen Y. MANGANESE REVEALS ALL. J Exp Biol 2004. [DOI: 10.1242/jeb.01384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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