Raman scattering and in-water ocean optical properties

Monte Carlo modelling for elastic and Raman signals in oceanic LiDAR

We investigate Raman returns in oceanic light detection and ranging (LiDAR), and explore the similarities and differences to conventional elastic returns. We show that Raman returns have much more complex behavior than elastic returns, which likely cannot be well matched by simple models, making Monte Carlo simulations essential. We investigate the correlation between the time of signal arrival and the depth of the Raman event, and find that a linear correlation only exists for judicious choice of system parameters.

CO2 Ocean Bistability on Terrestrial Exoplanets

Cycling of carbon dioxide between the atmosphere and interior of rocky planets can stabilize global climate and enable planetary surface temperatures above freezing over geologic time. However, variations in global carbon budget and unstable feedback cycles between planetary sub-systems may destabilize the climate of rocky exoplanets toward regimes unknown in the Solar System. Here, we perform clear-sky atmospheric radiative transfer and surface weathering simulations to probe the stability of climate equilibria for rocky, ocean-bearing exoplanets at instellations relevant for planetary systems in the outer regions of the circumstellar habitable zone. Our simulations suggest that planets orbiting G- and F-type stars (but not M-type stars) may display bistability between an Earth-like climate state with efficient carbon sequestration and an alternative stable climate equilibrium where CO2 condenses at the surface and forms a blanket of either clathrate hydrate or liquid CO2. At increasing instellation and with ineffective weathering, the latter state oscillates between cool, surface CO2-condensing and hot, non-condensing climates. CO2 bistable climates may emerge early in planetary history and remain stable for billions of years. The carbon dioxide-condensing climates follow an opposite trend in pCO2 versus instellation compared to the weathering-stabilized planet population, suggesting the possibility of observational discrimination between these distinct climate categories.

Determination of the Raman polarizability tensor in the optically anisotropic crystal potassium dihydrogen phosphate and its deuterated analog

The Raman tensor of the dominant A₁ modes of the nonlinear optical crystalline material potassium dihydrogen phosphate and its 70% deuterated analog have been ascertained. Challenges in determining the A₁ mode tensor element values based on previous reports have been resolved using a specially designed experimental setup that makes use of spherical crystal samples. This novel experimental design enabled the determination of measurement artifacts, including polarization rotation of the pump and/or scattered light propagating through the sample and the contribution of additional overlapping phonon modes, which have hindered previous efforts. Results confirmed that the polarization tensor is diagonal, and matrix elements were determined with high accuracy.

Absolute Cross Sections of Liquids from Broadband Stimulated Raman Scattering with Femtosecond and Picosecond Pulses

Broadband stimulated Raman scattering (SRS) is often observed in applications that use nonlinear spectroscopy to probe the composition or dynamics of complex systems. Whether the SRS response is measured intentionally or unintentionally, as a background signal, the relative scattering intensities provide a quantitative measure of the population profile of target molecules. Solvent scattering is a valuable internal reference for determining absolute concentrations in these applications, but accurate cross sections have been reported for only a limited number of transitions in select solvents and were measured using spontaneous Raman scattering with narrowband continuous wave or nanosecond light sources. This work reports the measurement and analysis of absolute Raman scattering cross sections spanning the frequency range of 500-4000 cm^-1 for cyclohexane, DMSO, acetonitrile, methanol, water, benzene, and toluene using broadband SRS with femtosecond and picosecond Raman pump pulses at 488 nm. Varying the duration of the Raman pump pulses from ∼80 fs to >1 ps confirms that the cross sections are independent of the spectral bandwidth across the range of ∼250 to <20 cm^-1. The cross sections and depolarization ratios measured using broadband SRS agree with the limited number of previously reported values, after accounting for overlapping transitions in the lower-resolution femtosecond and picosecond spectra. The SRS cross sections reported here can be used with confidence as internal reference standards for a wide range of applications, including nonlinear spectroscopy and coherent microscopy measurements using ultrafast lasers.

Modeling the remote-sensing reflectance of highly turbid waters

In ocean-color remote sensing, subsurface remote-sensing reflectance (r _{r s} ) of optically deep waters can be linked to its absorption (a) and backscattering coefficients (b _b ) by various models. The use of such models allows for quick calculations r _{r s} from such coefficients, eliminating the need to solve the radiative transfer equation. In particular, r _{r s} can be expressed as a function of b_b/(a+b_b). HydroLight and Monte Carlo simulations showed that commonly used models underestimate r _{r s} in waters with high suspended sediment loads. Monte Carlo simulations confirmed that this issue is due to a sharp increase in multiple scattering events at high turbidity levels. A quartic polynomial model is derived relating r _{r s} and inherent optical properties (IOPs) for waters of any turbidity, to avoid significant errors in waters of high turbidity.

Atmospheric Correction of Satellite Ocean-Color Imagery During the PACE Era

The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission will carry into space the Ocean Color Instrument (OCI), a spectrometer measuring at 5nm spectral resolution in the ultraviolet (UV) to near infrared (NIR) with additional spectral bands in the shortwave infrared (SWIR), and two multi-angle polarimeters that will overlap the OCI spectral range and spatial coverage, i. e., the Spectrometer for Planetary Exploration (SPEXone) and the Hyper-Angular Rainbow Polarimeter (HARP2). These instruments, especially when used in synergy, have great potential for improving estimates of water reflectance in the post Earth Observing System (EOS) era. Extending the top-of-atmosphere (TOA) observations to the UV, where aerosol absorption is effective, adding spectral bands in the SWIR, where even the most turbid waters are black and sensitivity to the aerosol coarse mode is higher than at shorter wavelengths, and measuring in the oxygen A-band to estimate aerosol altitude will enable greater accuracy in atmospheric correction for ocean color science. The multi-angular and polarized measurements, sensitive to aerosol properties (e.g., size distribution, index of refraction), can further help to identify or constrain the aerosol model, or to retrieve directly water reflectance. Algorithms that exploit the new capabilities are presented, and their ability to improve accuracy is discussed. They embrace a modern, adapted heritage two-step algorithm and alternative schemes (deterministic, statistical) that aim at inverting the TOA signal in a single step. These schemes, by the nature of their construction, their robustness, their generalization properties, and their ability to associate uncertainties, are expected to become the new standard in the future. A strategy for atmospheric correction is presented that ensures continuity and consistency with past and present ocean-color missions while enabling full exploitation of the new dimensions and possibilities. Despite the major improvements anticipated with the PACE instruments, gaps/issues remain to be filled/tackled. They include dealing properly with whitecaps, taking into account Earth-curvature effects, correcting for adjacency effects, accounting for the coupling between scattering and absorption, modeling accurately water reflectance, and acquiring a sufficiently representative dataset of water reflectance in the UV to SWIR. Dedicated efforts, experimental and theoretical, are in order to gather the necessary information and rectify inadequacies. Ideas and solutions are put forward to address the unresolved issues. Thanks to its design and characteristics, the PACE mission will mark the beginning of a new era of unprecedented accuracy in ocean-color radiometry from space.

Characterization of the Light Field and Apparent Optical Properties in the Ocean Euphotic Layer Based on Hyperspectral Measurements of Irradiance Quartet

Although the light fields and apparent optical properties (AOPs) within the ocean euphotic layer have been studied for many decades through extensive measurements and theoretical modeling, there is virtually a lack of simultaneous high spectral resolution measurements of plane and scalar downwelling and upwelling irradiances (the so-called irradiance quartet). We describe a unique dataset of hyperspectral irradiance quartet, which was acquired under a broad range of environmental conditions within the water column from the near-surface depths to about 80 m in the Gulf of California. This dataset enabled the characterization of a comprehensive suite of AOPs for realistic non-uniform vertical distributions of seawater inherent optical properties (IOPs) and chlorophyll-a concentration (Chl) in the common presence of inelastic radiative processes within the water column, in particular Raman scattering by water molecules and chlorophyll-a fluorescence. In the blue and green spectral regions, the vertical patterns of AOPs are driven primarily by IOPs of seawater with weak or no discernible effects of inelastic processes. In the red, the light field and AOPs are strongly affected or totally dominated by inelastic processes of Raman scattering by water molecules, and additionally by chlorophyll-a fluorescence within the fluorescence emission band. The strongest effects occur in the chlorophyll-a fluorescence band within the chlorophyll-a maximum layer, where the average cosines of the light field approach the values of uniform light field, irradiance reflectance is exceptionally high approaching 1, and the diffuse attenuation coefficients for various irradiances are exceptionally low, including the negative values for the attenuation of upwelling plane and scalar irradiances. We established the empirical relationships describing the vertical patterns of some AOPs in the red spectral region as well as the relationships between some AOPs which can be useful in common experimental situations when only the downwelling plane irradiance measurements are available. We also demonstrated the applicability of irradiance quartet data in conjunction with Gershun’s equation for estimating the absorption coefficient of seawater in the blue-green spectral region, in which the effects of inelastic processes are weak or negligible.

Concept for maritime near-surface surveillance using water Raman scattering

We discuss a maritime surveillance and detection concept based on Raman scattering of water molecules. Using a range-gated scanning lidar that detects Raman scattered photons from water, the absence or change of signal indicates the presence of a non-water object. With sufficient spatial resolution, a two-dimensional outline of the object can be generated by the scanning lidar. Because Raman scattering is an inelastic process with a relatively large wavelength shift for water, this concept avoids the often problematic elastic scattering for objects at or very close to the water surface or from the bottom surface for shallow waters. The maximum detection depth for this concept is limited by the attenuation of the excitation and return Raman light in water. If excitation in the UV is used, fluorescence can be used for discrimination between organic and non-organic objects. In this paper, we present a lidar model for this concept and discuss results of proof-of-concept measurements. Using published cross section values, the model and measurements are in reasonable agreement and show that a sufficient number of Raman photons can be generated for modest lidar parameters to make this concept useful for near-surface detection.

Water-leaving contribution to polarized radiation field over ocean

The top-of-atmosphere (TOA) radiation field from a coupled atmosphere-ocean system (CAOS) includes contributions from the atmosphere, surface, and water body. Atmospheric correction of ocean color imagery is to retrieve water-leaving radiance from the TOA measurement, from which ocean bio-optical properties can be obtained. Knowledge of the absolute and relative magnitudes of water-leaving signal in the TOA radiation field is important for designing new atmospheric correction algorithms and developing retrieval algorithms for new ocean biogeochemical parameters. In this paper we present a systematic sensitivity study of water-leaving contribution to the TOA radiation field, from 340 nm to 865 nm, with polarization included. Ocean water inherent optical properties are derived from bio-optical models for two kinds of waters, one dominated by phytoplankton (PDW) and the other by non-algae particles (NDW). In addition to elastic scattering, Raman scattering and fluorescence from dissolved organic matter in ocean waters are included. Our sensitivity study shows that the polarized reflectance is minimized for both CAOS and ocean signals in the backscattering half plane, which leads to numerical instability when calculating water leaving relative contribution, the ratio between polarized water leaving and CAOS signals. If the backscattering plane is excluded, the water-leaving polarized signal contributes less than 9% to the TOA polarized reflectance for PDW in the whole spectra. For NDW, the polarized water leaving contribution can be as much as 20% in the wavelength range from 470 to 670 nm. For wavelengths shorter than 452 nm or longer than 865 nm, the water leaving contribution to the TOA polarized reflectance is in general smaller than 5% for NDW. For the TOA total reflectance, the water-leaving contribution has maximum values ranging from 7% to 16% at variable wavelengths from 400 nm to 550 nm from PDW. The water leaving contribution to the TOA total reflectance can be as large as 35% for NDW, which is in general peaked at 550 nm. Both the total and polarized reflectances from water-leaving contributions approach zero in the ultraviolet and near infrared bands. These facts can be used as constraints or guidelines when estimating the water leaving contribution to the TOA reflectance for new atmospheric correction algorithms for ocean color imagery.

Vector radiative transfer model for coupled atmosphere and ocean systems including inelastic sources in ocean waters

Inelastic scattering plays an important role in ocean optics. The main inelastic scattering mechanisms include Raman scattering, fluorescence by colored dissolved organic matter (FDOM), and fluorescence by chlorophyll. This paper reports an implementation of all three inelastic scattering mechanisms in the exact vector radiative transfer model for coupled atmosphere and ocean Systems (CAOS). Simulation shows that FDOM contributes to the water radiation field in the broad visible spectral region, while chlorophyll fluorescence is limited in a narrow band centered at 685 nm. This is consistent with previous findings in the literature. The fluorescence distribution as a function of depth and viewing angle is presented. The impacts of fluorescence to the degree of linear polarization (DoLP) and orientation of the polarization ellipse (OPE) are studied. The DoLP is strongly influenced by inelastic scattering at wavelengths with strong inelastic scattering contribution. The OPE is less affected by inelastic scattering but it has a noticeable impact, in terms of the angular region of positive polarization, in the backward direction. This effect is more apparent for deeper water depth.

Constraints on the Early Terrestrial Surface UV Environment Relevant to Prebiotic Chemistry

The UV environment is a key boundary condition to abiogenesis. However, considerable uncertainty exists as to planetary conditions and hence surface UV at abiogenesis. Here, we present two-stream multilayer clear-sky calculations of the UV surface radiance on Earth at 3.9 Ga to constrain the UV surface fluence as a function of albedo, solar zenith angle (SZA), and atmospheric composition. Variation in albedo and latitude (through SZA) can affect maximum photoreaction rates by a factor of >10.4; for the same atmosphere, photoreactions can proceed an order of magnitude faster at the equator of a snowball Earth than at the poles of a warmer world. Hence, surface conditions are important considerations when computing prebiotic UV fluences. For climatically reasonable levels of CO₂, fluence shortward of 189 nm is screened out, meaning that prebiotic chemistry is robustly shielded from variations in UV fluence due to solar flares or variability. Strong shielding from CO₂ also means that the UV surface fluence is insensitive to plausible levels of CH₄, O₂, and O₃. At scattering wavelengths, UV fluence drops off comparatively slowly with increasing CO₂ levels. However, if SO₂ and/or H₂S can build up to the ≥1-100 ppm level as hypothesized by some workers, then they can dramatically suppress surface fluence and hence prebiotic photoprocesses. H₂O is a robust UV shield for λ < 198 nm. This means that regardless of the levels of other atmospheric gases, fluence ≲198 nm is only available for cold, dry atmospheres, meaning sources with emission ≲198 (e.g., ArF excimer lasers) can only be used in simulations of cold environments with low abundance of volcanogenic gases. On the other hand, fluence at 254 nm is unshielded by H₂O and is available across a broad range of [Formula: see text], meaning that mercury lamps are suitable for initial studies regardless of the uncertainty in primordial H₂O and CO₂ levels. Key Words: Radiative transfer-Origin of life-Planetary environments-UV radiation-Prebiotic chemistry. Astrobiology 17, 169-204.

Stimulated Raman Scattering: From Bulk to Nano

Stimulated Raman scattering (SRS) describes a family of techniques first discovered and developed in the 1960s. Whereas the nascent history of the technique is parallel to that of laser light sources, recent advances have spurred a resurgence in its use and development that has spanned across scientific fields and spatial scales. SRS is a nonlinear technique that probes the same vibrational modes of molecules that are seen in spontaneous Raman scattering. While spontaneous Raman scattering is an incoherent technique, SRS is a coherent process, and this fact provides several advantages over conventional Raman techniques, among which are much stronger signals and the ability to time-resolve the vibrational motions. Technological improvements in pulse generation and detection strategies have allowed SRS to probe increasingly smaller volumes and shorter time scales. This has enabled SRS research to move from its original domain, of probing bulk media, to imaging biological tissues and single cells at the micro scale, and, ultimately, to characterizing samples with subdiffraction resolution at the nanoscale. In this Review, we give an overview of the history of the technique, outline its basic properties, and present historical and current uses at multiple length scales to underline the utility of SRS to the molecular sciences.

Implementation of an analytical Raman scattering correction for satellite ocean-color processing

Raman scattering of photons by seawater molecules is an inelastic scattering process. This effect can contribute significantly to the water-leaving radiance signal observed by space-borne ocean-color spectroradiometers. If not accounted for during ocean-color processing, Raman scattering can cause biases in derived inherent optical properties (IOPs). Here we describe a Raman scattering correction (RSC) algorithm that has been integrated within NASA's standard ocean-color processing software. We tested the RSC with NASA's Generalized Inherent Optical Properties algorithm (GIOP). A comparison between derived IOPs and in situ data revealed that the magnitude of the derived backscattering coefficient and the phytoplankton absorption coefficient were reduced when the RSC was applied, whilst the absorption coefficient of colored dissolved and detrital matter remained unchanged. Importantly, our results show that the RSC did not degrade the retrieval skill of the GIOP. In addition, a time-series study of oligotrophic waters near Bermuda showed that the RSC did not introduce unwanted temporal trends or artifacts into derived IOPs.

Contribution of Raman scattering to polarized radiation field in ocean waters

We have implemented Raman scattering in a vector radiative transfer model for coupled atmosphere and ocean systems. A sensitivity study shows that the Raman scattering contribution is greatest in clear waters and at longer wavelengths. The Raman scattering contribution may surpass the elastic scattering contribution by several orders of magnitude at depth. The degree of linear polarization in water is smaller when Raman scattering is included. The orientation of the polarization ellipse shows similar patterns for both elastic and inelastic scattering contributions. As polarimeters and multipolarization-state lidars are planned for future Earth observing missions, our model can serve as a valuable tool for the simulation and interpretation of these planned observations.

Influence of Raman scattering on the light field in natural waters: a simple assessment

A simple, surprisingly accurate, method for estimating the influence of Raman scattering on the upwelling light field in natural waters is developed. The method is based on the single (or quasi-single) scattering solution of the radiative transfer equation with the Raman source function. Given the light field at the excitation wavelength, accurate estimates (~1-10%) of the contribution of Raman scattering to the light field at the emission wavelength are obtained. The accuracy is only slightly degraded when typically measured aspects of the light field at the excitation are available.

Assessment and correction of turbidity effects on Raman observations of chemicals in aqueous solutions

Improvements in diode laser, fiber optic, and data acquisition technologies are enabling increased use of Raman spectroscopic techniques for both in lab and in situ water analysis. Aqueous media encountered in the natural environment often contain suspended solids that can interfere with spectroscopic measurements, yet removal of these solids, for example, via filtration, can have even greater adverse effects on the extent to which subsequent measurements are representative of actual field conditions. In this context, this study focuses on evaluation of turbidity effects on Raman spectroscopic measurements of two common environmental pollutants in aqueous solution: ammonium nitrate and trichloroethylene. The former is typically encountered in the runoff from agricultural operations and is a strong scatterer that has no significant influence on the Raman spectrum of water. The latter is a commonly encountered pollutant at contaminated sites associated with degreasing and cleaning operations and is a weak scatterer that has a significant influence on the Raman spectrum of water. Raman observations of each compound in aqueous solutions of varying turbidity created by doping samples with silica flour with grain sizes ranging from 1.6 to 5.0 μm were employed to develop relationships between observed Raman signal strength and turbidity level. Shared characteristics of these relationships were then employed to define generalized correction methods for the effect of turbidity on Raman observations of compounds in aqueous solution.

Hide and seek in the open sea: pelagic camouflage and visual countermeasures

Camouflage is exceptionally challenging in pelagic environments because of their featureless nature. Thus, it is perhaps no surprise that pelagic species have evolved highly sophisticated cryptic strategies, three of which-transparency, mirrors, and counter illumination-are rare or absent in other habitats. Pelagic visual systems are equally complex, and several visual capabilities, including UV and polarization sensitivity and intraocular filters, are thought to facilitate detection of camouflaged animals. This article reviews the optical nature of the pelagic realm and both the camouflage and camouflage-breaking strategies of its inhabitants, focusing primarily on underlying principles and what remains to be discovered. A theme throughout is that far more is known about the structures of the optical and visual systems involved than about their function, an imbalance that is due primarily to the rarity of observations of undisturbed behavior.

Influence of Raman scattering on ocean color inversion models

Raman scattering can be a significant contributor to the emergent radiance spectrum from the surface ocean. Here, we present an analytical approach to directly estimate the Raman contribution to remote sensing reflectance, and evaluate its effects on optical properties estimated from two common semianalytical inversion models. For application of the method to ocean color remote sensing, spectral irradiance products in the ultraviolet from the OMI instrument are merged with MODerate-resolution Imaging Spectroradiometer (MODIS) data in the visible. The resulting global fields of Raman-corrected optical properties show significant differences from standard retrievals, particularly for the particulate backscattering coefficient, b(bp), where average errors in clear ocean waters are ~50%. Given the interest in transforming b(bp) into biogeochemical quantities, Raman scattering must be accounted for in semianalytical inversion schemes.

Accurate measurements of the Raman scattering coefficient and the depolarization ratio in liquid water

Despite a long history, the Raman scattering coefficient of water has so far only been measured with 10% uncertainty using a 95% confidence interval. In this paper, we present an experiment where we have achieved 1.5% uncertainty by using a low concentration of Rhodamine 6G in ethanol as a reference along with accurate consideration of polarization-related effects and the geometry of the experimental setup. We have found that the photon-to-photon Raman scattering coefficient of the OH stretching band of liquid water is (1.84±0.03)×10(-4) m(-1) when integrated over the spectral frequency range from 620 to 700 nm while the exciting laser operates at 532 nm. We have also accurately measured the depolarization ratio across this band.

Robust approach to directly measuring water-leaving radiance in the field

It has been a long-standing goal to precisely measure water-leaving radiance (L(w), or its equivalent property, remote-sensing reflectance) in the field, but reaching this goal is quite a challenge. This is because conventional approaches do not provide a direct measurement of L(w), but rather measure various related components and subsequently derive this core property from these components. Due to many uncontrollable factors in the measurement procedure and imprecise post-measurement processing routines, the resulting L(w) is inherently associated with various levels of uncertainties. Here we present a methodology called the skylight-blocked approach (SBA) to measure L(w) directly in the field, along with results obtained recently in the Laurentian Great Lakes. These results indicate that SBA can measure L(w) in high precision. In particular, there is no limitation of water types for the deployment of SBA, and the requirement of post-measurement processing is minimum; thus high-quality L(w) for a wide range of aquatic environments can be acquired.

Genesis and evolution of polarization of light in the ocean [invited]

The radiative transfer of sunlight through the deep oceans of the world is a complex and only partially solved environmental optical problem. Empirically, in situ systematic measurements of key parameters such as polarization of deep open seawater have been very sparse in recent decades. Although we have the necessary equation of transfer to solve this complex problem, until it can be solved explicitly, only approximations and partial analytic solutions are possible in addition to some successful computer modeling. Further complexity is added by the diversity of researchers' interests from academic to international policy making, as well as the ineffective communication between the different disciplines concerned, ranging from mathematics to endangered species. As a result, isolated focused pockets of good data and theory have been developed in recent decades without the needed breadth of understanding. This present review intends to bring together some visual biology and optical physics in order to understand the role of polarization in navigation, communication, and identification of marine animals as well as a possible tool for remotely sensing underwater objects.

Spectra of particulate backscattering in natural waters

Hyperspectral profiles of downwelling irradiance and upwelling radiance in natural waters (oligotrophic and mesotrophic) are combined with inverse radiative transfer to obtain high resolution spectra of the absorption coefficient (a) and the backscattering coefficient (b(b)) of the water and its constituents. The absorption coefficient at the mesotrophic station clearly shows spectral absorption features attributable to several phytoplankton pigments (Chlorophyll a, b, c, and Carotenoids). The backscattering shows only weak spectral features and can be well represented by a power-law variation with wavelength (lambda): b(b) approximately lambda(-n), where n is a constant between 0.4 and 1.0. However, the weak spectral features in b(b)b suggest that it is depressed in spectral regions of strong particle absorption. The applicability of the present inverse radiative transfer algorithm, which omits the influence of Raman scattering, is limited to lambda < 490 nm in oligotrophic waters and lambda < 575 nm in mesotrophic waters.

Detection of fluorescent-labeled probes at subpicomolar concentrations by magnetic modulation

A sensitive and rapid method for detecting fluorescent dyes at low concentrations in homogenous solution is experimentally demonstrated. Fluorescent-labeled DNA probes are detected by attaching magnetic beads and applying alternating magnetic field gradient. This condenses the fluorescent probes into a small detection volume and eliminates the scattering noise from solution by synchronous detection. For DNA probes concentration of 1 x 10(-13) M the detection signal was 3.3 times higher than the noise, thereby implying detection sensitivity of 3 x 10(-14) M.

Practical test of a point-source integrating cavity absorption meter: the performance of different collector assemblies

A prototype point-source integrating cavity absorption meter (PSICAM) is presented and compared with spectrophotometric absorption measurements. Different light collector assemblies of the PSICAM were tested regarding their capability to determine the absorption of water constituents accurately over a wide range of concentrations and scattering properties. The PSICAM setup with a radiance-type sensor showed the best performance. It was compared with a photometric absorption determination using nonscattering dye solutions. The mean difference between both methods was less than 2.4% in the spectral range of 400-700 nm. The absorption determination with the PSICAM, when equipped with a radiance sensor as a light collector, was only little affected by scattering and temperature. We conclude that the PSICAM can be used to determine the absorption of natural seawater samples at ambient temperatures.

Raman lidar observations of cloud liquid water

We report the design and the performances of a Raman lidar for long-term monitoring of tropospheric aerosol backscattering and extinction coefficients, water vapor mixing ratio, and cloud liquid water. We focus on the system's capabilities of detecting Raman backscattering from cloud liquid water. After describing the system components, along with the current limitations and options for improvement, we report examples of observations in the case of low-level cumulus clouds. The measurements of the cloud liquid water content, as well as the estimations of the cloud droplet effective radii and number densities, obtained by combining the extinction coefficient and cloud water content within the clouds, are critically discussed.

Propagation and perception of bioluminescence: factors affecting counterillumination as a cryptic strategy

Many deep-sea species, particularly crustaceans, cephalopods, and fish, use photophores to illuminate their ventral surfaces and thus disguise their silhouettes from predators viewing them from below. This strategy has several potential limitations, two of which are examined here. First, a predator with acute vision may be able to detect the individual photophores on the ventral surface. Second, a predator may be able to detect any mismatch between the spectrum of the bioluminescence and that of the background light. The first limitation was examined by modeling the perceived images of the counterillumination of the squid Abralia veranyi and the myctophid fish Ceratoscopelus maderensis as a function of the distance and visual acuity of the viewer. The second limitation was addressed by measuring downwelling irradiance under moonlight and starlight and then modeling underwater spectra. Four water types were examined: coastal water at a depth of 5 m and oceanic water at 5, 210, and 800 m. The appearance of the counterillumination was more affected by the visual acuity of the viewer than by the clarity of the water, even at relatively large distances. Species with high visual acuity (0.11 degrees resolution) were able to distinguish the individual photophores of some counterilluminating signals at distances of several meters, thus breaking the camouflage. Depth and the presence or absence of moonlight strongly affected the spectrum of the background light, particularly near the surface. The increased variability near the surface was partially offset by the higher contrast attenuation at shallow depths, which reduced the sighting distance of mismatches. This research has implications for the study of spatial resolution, contrast sensitivity, and color discrimination in deep-sea visual systems.

Effect of inelastic scattering on underwater daylight in the ocean: model evaluation, validation, and first results

A model based on a matrix-operator theory capable of simulating underwater daylight in the ocean is presented. The main focus is on gelbstoff and chlorophyll fluorscence as well as water Raman scattering as sources of inelastic scattering and their effect on underwater daylight and relevance for the remote sensing of ocean color. Any combination of inelastic sources can be investigated, including differences in simulated underwater daylight in the absence and the presence of these sources. To our knowledge, it is the first matrix-operator model to include all these inelastic source. The model allows simulations for case 1 and case 2 waters. Calculations can be done with highly anisotropic phase functions as they are observed in the ocean, and every order of multiple scattering is considered. A detailed mathematical description of inelastic sources is given, and a special treatment of the depth dependency of these sources is presented. The model is validated by comparison with depth-dependent and spectrally resolved measurements of downward irradiance in the open ocean. The differences between measured and simulated data are within the error of the radiometric measurements. Water Raman scattering has been found to contribute significantly to water-leaving radiance. The inelastic fraction depends on the water Raman scattering coefficient, on the ratio of the total attenuation coefficient at excitation and emission wavelengths, and on the spectral course of the irradiance incident on the ocean. For clear ocean waters the inelastic fraction can reach values of more than 17% [C = 0.08 mg m(-3), a(y) (440 nm) = 0.01 m(-1)] at wavelengths relevant for the remote sensing of ocean color. The inelastic fraction of gelbstoff fluorescence can reach or even exceed the relevance of water Raman scattering atshort wavelengths. In the water column, depending on optically active substances and on actual depth, water Raman scattering can provide 100% of the light field at wavelengths greater than 580 nm. The effect of gelbstoff fluorescence on depth-dependent irradiances is less significant than the effect of water Raman scattering in all cases considered, except for near surface levels and high gelbstoff concentrations.

Cryptic and conspicuous coloration in the pelagic environment

Despite the importance of cryptic and conspicuous coloration in pelagic ecosystems, few researchers have investigated the optimal reflectance spectra for either trait. In this study, the underwater radiance distribution in tropical oceanic water was modelled using measured inherent optical properties and radiative transfer calculations. The modelled light field was then used to predict the reflectance spectra that resulted in minimal or maximal object contrast as a function of depth, viewing angle, azimuth and solar elevation. The results matched commonly observed trends in the coloration of many pelagic organisms and showed that optimal coloration for either crypticity or conspicuity is a complex function of the parameters examined. The effects of viewing angle and depth were substantial and non-intuitive, showing that red coloration is most cryptic at depth. The effects of viewing azimuth were less significant and the effects of solar elevation were minor. White coloration and black coloration were equally cryptic/conspicuous when viewed from below. Although conspicuous objects viewed from below had the lowest contrast when viewed from a short distance, they had the longest sighting distances. The contrast of maximally conspicuous objects viewed from short distances was greatest at wavelengths displaced from the wavelength of maximum light penetration.

Determination of the fluorescence quantum yield by oceanic phytoplankton in their natural habitat

Sun-stimulated chlorophyll a fluorescence has been measured in situ, within the upward and downward light fields, in oceanic waters with chlorophyll concentrations of 0.04-3 mg m(-3). We combined these signals with phytoplankton absorption spectra to derive the fluorescence quantum yield, phi (number of photons emitted by fluorescence/number of absorbed photons). phi was derived separately from hyperspectral (upward and downward) irradiance measurements (with a LI-COR Instruments spectroradiometer) and from nadir radiance near 683 nm (with a Biospherical Instruments profiler). The contribution of inelastic Raman scattering to the signal in the red band was assessed and subtracted. Raman-corrected phi values derived from the two instruments compared well. Vertical phi profiles were strongly structured, with maximal (5-6%) values at depth, whereas phi was approximately =1% in near-surface waters (measurements made approximately at solar noon). These near-surface values are needed for interpretation of remotely sensed fluorescence signals. This optical study shows that the fluorescence yield of algae in their natural environment can be accurately derived in a nonintrusive way with available instrumentation and adequate protocols.

Irradiance inversion algorithm for estimating the absorption and backscattering coefficients of natural waters: Raman-scattering effects

We modify an algorithm for retrieving the absorption (a) and backscattering (b(b)) coefficient profiles in natural waters by inverting profiles of downwelling and upwelling irradiance so as to include the presence of Raman scattering. For a given wavelength of interest, lambda, the light field at the appropriate Raman excitation wavelength lambda(e) is first inverted to obtain the Raman source function at lambda. Starting from estimates of the inherent optical properties at lambda, the contribution to the irradiances at lambda from Raman scattering is then estimated and subtracted from the total irradiances to obtain the elastically scattered irradiances. We then inverted the elastically scattered irradiances to find new estimates of a and b(b) using our original method [Appl. Opt. 37, 3886 (1998)]. The algorithm then operates iteratively: The new estimates are used with the Raman source function to derive a new estimate of the Raman contribution, etc. Sample results are provided that demonstrate the working of the algorithm and show that the absorption and scattering coefficients can be retrieved with accuracies similar to those in the absence of Raman scattering down to depths at which the light field is significantly perturbed by it, e.g., with approximately 90% of the upwelling light field originating from Raman scattering.

Estimation of the inherent optical properties of natural waters from the irradiance attenuation coefficient and reflectance in the presence of Raman scattering

By means of radiative transfer simulations we developed a model for estimating the absorption a, the scattering b, and the backscattering b(b) coefficients in the upper ocean from irradiance reflectance just beneath the sea surface, R(0-), and the average attenuation coefficient for downwelling irradiance, <K(d)>1, between the surface and the first attenuation depth. The model accounts for Raman scattering by water, and it does not require any assumption about the spectral shapes of a, b, and b(b). The best estimations are obtained for a and b(b) in the blue and green spectral regions, where errors of a few percent to <10% are expected over a broad range of chlorophyll concentration in water. The model is useful for satellite ocean color applications because the model input, R(0-) and <K(d)>1, can be retrieved from remote sensing and the model output, a and b(b), is the major determinant of remote-sensing reflectance.

Application of the Raman scattering coefficient of water to calculations in marine optics

The relation between the total Raman scattering coefficient of water (b(r)) and the Raman scattering cross section of liquid water is clarified. Consideration of the experimental configurations used to derive the Raman scattering cross section of water relative to benzene leads to a revised value of b(r) for water. In certain applications in marine optics it is necessary to scale b(r) to effect a change from implicit units of energy to quanta.

Hyperspectral remote sensing for shallow waters. 2. Deriving bottom depths and water properties by optimization

In earlier studies of passive remote sensing of shallow-water bathymetry, bottom depths were usually derived by empirical regression. This approach provides rapid data processing, but it requires knowledge of a few true depths for the regression parameters to be determined, and it cannot reveal in-water constituents. In this study a newly developed hyperspectral, remote-sensing reflectance model for shallow water is applied to data from computer simulations and field measurements. In the process, a remote-sensing reflectance spectrum is modeled by a set of values of absorption, backscattering, bottom albedo, and bottom depth; then it is compared with the spectrum from measurements. The difference between the two spectral curves is minimized by adjusting the model values in a predictor-corrector scheme. No information in addition to the measured reflectance is required. When the difference reaches a minimum, or the set of variables is optimized, absorption coefficients and bottom depths along with other properties are derived simultaneously. For computer-simulated data at a wind speed of 5 m/s the retrieval error was 5.3% for depths ranging from 2.0 to 20.0 m and 7.0% for total absorption coefficients at 440 nm ranging from 0.04 to 0.24 m(-1). At a wind speed of 10 m/s the errors were 5.1% for depth and 6.3% for total absorption at 440 nm. For field data with depths ranging from 0.8 to 25.0 m the difference was 10.9% (R2 = 0.96, N = 37) between inversion-derived and field-measured depth values and just 8.1% (N = 33) for depths greater than 2.0 m. These results suggest that the model and the method used in this study, which do not require in situ calibration measurements, perform very well in retrieving in-water optical properties and bottom depths from above-surface hyperspectral measurements.

Contribution of Raman scattering to water-leaving radiance: a reexamination

We have reexamined the contribution of Raman scattering to the water-leaving radiance in case 1 waters by carrying out radiative transfer simulations that combine the latest reported measurements of the absorption coefficient of pure water with direct measurements of the spectral variation of the Raman-scattering coefficient. The resulting contribution of Raman scattering is then compared with experimental measurements of the water-leaving radiance, and the fractional contribution of radiance produced by Raman scattering to the total radiance measured at a given wavelength is determined. The results show that (1) the contribution of Raman scattering to the water-leaving radiance in an ocean of pure seawater is as much as 50-100% larger than earlier predictions, and (2) the Raman contribution does not decay as rapidly with increasing concentrations of chlorophyllouslike pigments C as predicted earlier. In fact, the Raman fraction for C <or= 1 mg/m(3) is approximately >8% at wavelengths of interest in ocean color remote sensing and therefore cannot be ignored in ocean color modeling.

Absolute Emission Spectra from Bacillus subtilis and Escherichia coli Vegetative Cells in Solution

Spectrally resolved emission (270-560 nm) from dilute suspensions of washed Bacillus subtilis and Escherichia coli were measured by use of tunable laser excitation between 270 and 300 nm. Integrated absolute emission cross sections increase with decreasing excitation wavelength and range from 1.8 x 10(-12) to 6.0 x 10(-11) cm(2)/(particle sr). An emission band near 340 nm dominates all observed spectra. At each excitation wavelength spectrally resolved emissions from the E. coli and B. subtilis suspensions are indistinguishable.

Raman scattering by pure water and seawater

Measurements of the magnitude and spectral distribution of the Raman-scattering coefficients of pure water (b(rw)) and seawater (b(rs)) are presented. Two independent measurements of the spectral distribution of the Raman-scattering coefficient of pure water were made for incident wavelengths ranging from 250 to 500 nm. These measurements revealed a strong dependence of b(rw) on wavelength that could be represented by a (lambda')(-5.3+/-0.3) relationship, where lambda' is the incident wavelength, or a lambda(-4.6+/-0.3) relationship, where lambda is the Raman-scattered wavelength, when normalized to units of photons. The corresponding relationships for normalization to energy are (lambda')(-5.5+/-0.4) and lambda(-4.8+/-0.3), respectively. These relationships are found to be consistent with resonance Raman theory for an absorption wavelength of 130 nm. The absolute value of b(rw) for the 3400-cm(-1) line was found to be (2.7 +/- 0.2) x 10(-4) m(-1) for an incident wavelength of 488 nm, which is consistent with a number of earlier reports. The difference between the magnitudes of the Raman-scattering coefficients for pure water and seawater was statistically insignificant.

Ocean-color model incorporating transspectral processes

Ocean color is determined by spectral variations in reflectance at the sea surface, which in turn result from both elastic and inelastic processes. We extend an elastic-scattering model of sea surface reflectance to deal with Raman scattering, which is an inelastic process. The analytic solutions are derived for a vertically homogeneous and optically deep water column. The model presented here is based on the quasi-single-scattering approximation of Gordon [Appl. Opt. 12, 2803 (1973)] and is an extension of the model of Sathyendranath and Platt [Appl. Opt. 36, 2620 (1997)]. The Raman-scattering model includes a first-order Raman-scattering term and four second-order terms. Two of the second-order terms result from a combination of an elastic and a Raman-scattering event, whereas the other two second-order terms result from two Raman-scattering events. We show that the contribution to reflectance from these last two terms is typically of the order of 1% of the first-order Raman-scattering term. Therefore these terms and higher-order terms can be neglected for most applications. Issues related to the implementation of the model are discussed, with special reference to remote-sensing applications. Results from the analytic model are compared with Monte Carlo simulations of reflectance at the sea surface.

In situ measurements of Raman scattering in clear ocean water

We have further developed and improved the prototype oceanic Fraunhofer line discriminator by using a well-protected fiber-optic-wire cable and in-water electronic housing. We conducted a series of in situ measurements in clear ocean water in the Florida Straits. By comparing the reduced data with the Monte Carlo simulation results, we verify the Raman scattering coefficient B(r) with an excitation wavelength at 488 nm to be 2.6 x 10(-4) m(-1) [Appl. Opt. 29, 71-84 (1990)], as opposed to 14.4 x 10(-4) m(-1) [Appl. Opt.14, 2116-2120 (1975)]. The wavelength dependence of the Raman scattering coefficient is found to have an insignificant effect on the in-water light field. We also discuss factors that lead to errors. This study can be used as a basis for inelastic light scattering in the radiative transfer theory and will allow other inelastic light, e.g., fluorescence, to be detected with in situ measurements.

Radiance-irradiance inversion algorithm for estimating the absorption and backscattering coefficients of natural waters: homogeneous waters

A full multiple-scattering algorithm for inverting upwelling radiance (L(u)) or irradiance (E(u)) and downwelling irradiance (E(d)) profiles in homogeneous natural waters to obtain the absorption (a) and backscattering (b(b)) coefficients is described and tested with simulated data. An attractive feature of the algorithm is that it does not require precise knowledge of the scattering phase function of the medium. For the E(u)-E(d) algorithm, tests suggest that the error in the retrieved a should usually be ?1%, and the error in b(b)?10-20%. The performance of the L(u)-E(d) algorithm is not as good because it is more sensitive to the scattering phase function employed in the inversions; however, the error in a is usually still small, i.e., ?3%. When the algorithm is extended to accommodate the presence of a Lambertian-reflecting bottom, the retrievals of a are still excellent, even when the presence of the bottom significantly influences the upwelling light field; however, the error in b(b) can be large.

Wavelength dependence of the Raman cross section for liquid water

We report measurements of the wavelength dependence of the 3400-cm(-1) Raman scattering cross section of liquid water for excitation wavelengths between 215 and 550 nm. Using previous measurements of the absolute Raman scattering cross section, we have determined an expression for the wavelength dependence of the absolute Raman cross section for water.

Is the use of underwater polarized light by fish restricted to crepuscular time periods?

We measured the spectral distributions of the underwater total and polarized light fields in the upper photic zone of meso-eutrophic waters (i.e., blue-green waters containing medium to high chlorophyll a concentrations). Per cent polarization levels during the day were always lower than 40%, but at crepuscular times these values could increase to 67%. A corresponding change occurred in the spectral distribution, with proportionately more shorter wavelength photons contributing to the total spectrum during crepuscular periods. Electrophysiological recordings from the optic nerve of rainbow trout subjected to light stimuli of varying polarization percentages show that the animal's threshold for detecting polarized light is between 63 and 72%. These physiological findings suggest that the use of water-induced polarized light cues by rainbow trout and similar percomorph fish should be restricted to crepuscular time periods.

Marine asymptotic daylight field: effects of inelastic processes

The governing equations are developed for the marine asymptotic daylight field in the scalar approximation, including the effects of inelastic processes-Raman scattering and chromophoric dissolved organic matter fluorescence. The governing equations are solved numerically and compared with Monte Carlo simulations. It is found that these solutions are the actual radiance distributions approached by the asymptotic field in the Monte Carlo simulations. Sample solutions are provided to show the sensitivity of the light field to the various parameters of the medium. For certain values of the parameters, inclusion of inelastic processes can drastically alter the radiance distribution, e.g., from a near-Dirac delta function in the absence of inelastic processes to a near-isotropic distribution in their presence. The results suggest that in a real ocean, the asymptotic (and near-asymptotic) radiance distribution will tend to become more uniform as the wavelength increases beyond ~500 nm. Finally, it is shown that even for depths far from the asymptotic regime, the radiance distribution of the inelastic component of the light field can be well approximated by the asymptotic theory developed here for inelastic processes. Two exact analytical solutions to the governing equations are also provided.

Method to derive ocean absorption coefficients from remote-sensing reflectance

A method to derive in-water absorption coefficients from total remote-sensing reflectance (ratio of the upwelling radiance to the downwelling irradiance above the surface) analytically is presented. For measurements made in the Gulf of Mexico and Monterey Bay, with concentrations of chlorophyll-a ranging from 0.07 to 50 mg/m(3), comparisons are made for the total absorption coefficients derived with the suggested method and those derived with diffuse attenuation coefficients. For these coastal to open-ocean waters, including regions of upwelling and the Loop Current, the results are as follows: at 440 nm the difference between the two methods is 13.0% (r(2) = 0.96) for total absorption coefficients ranging from 0.02 to 2.0 m(-1); at 488 nm the difference is 14.5% (r(2) = 0.97); and at 550 nm the difference is 13.6% (r(2) = 0.96). The results indicate that the method presented works very well for retrieval of in-water absorption coefficients exclusively from remotely measured signals, and that this method has a wide range of potential applications in oceanic remote sensing.