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For: Ghosh P, Wasil LR, Hatfull GF. Control of phage Bxb1 excision by a novel recombination directionality factor. PLoS Biol 2007;4:e186. [PMID: 16719562 PMCID: PMC1470463 DOI: 10.1371/journal.pbio.0040186] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2006] [Accepted: 04/05/2006] [Indexed: 12/22/2022]  Open
Number Cited by Other Article(s)
1
Wu M, Marchando P, Meyer K, Tang Z, Woolfson DN, Weiner OD. The WAVE complex forms linear arrays at negative membrane curvature to instruct lamellipodia formation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.08.600855. [PMID: 39026726 PMCID: PMC11257481 DOI: 10.1101/2024.07.08.600855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
2
Saunders SH, Ahmed AM. ORBIT for E. coli: kilobase-scale oligonucleotide recombineering at high throughput and high efficiency. Nucleic Acids Res 2024;52:e43. [PMID: 38587185 PMCID: PMC11077079 DOI: 10.1093/nar/gkae227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 02/28/2024] [Accepted: 03/19/2024] [Indexed: 04/09/2024]  Open
3
Wang P, Du X, Zhao Y, Wang W, Cai T, Tang K, Wang X. Combining CRISPR/Cas9 and natural excision for the precise and complete removal of mobile genetic elements in bacteria. Appl Environ Microbiol 2024;90:e0009524. [PMID: 38497640 PMCID: PMC11022536 DOI: 10.1128/aem.00095-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 02/23/2024] [Indexed: 03/19/2024]  Open
4
MacDonald AI, Baksh A, Holland A, Shin H, Rice PA, Stark WM, Olorunniji FJ. Variable orthogonality of RDF - large serine integrase interactions within the ϕC31 family. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.03.587898. [PMID: 38617232 PMCID: PMC11014563 DOI: 10.1101/2024.04.03.587898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
5
Kuhn J, Banerjee P, Haye A, Robinson DN, Iglesias PA, Devreotes PN. Complementary Cytoskeletal Feedback Loops Control Signal Transduction Excitability and Cell Polarity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.13.580131. [PMID: 38405988 PMCID: PMC10888828 DOI: 10.1101/2024.02.13.580131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
6
Roelle S, Kamath ND, Matreyek KA. Mammalian Genomic Manipulation with Orthogonal Bxb1 DNA Recombinase Sites for the Functional Characterization of Protein Variants. ACS Synth Biol 2023;12:3352-3365. [PMID: 37922210 PMCID: PMC10661055 DOI: 10.1021/acssynbio.3c00355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 09/22/2023] [Accepted: 10/19/2023] [Indexed: 11/05/2023]
7
Elmore JR, Dexter GN, Baldino H, Huenemann JD, Francis R, Peabody GL, Martinez-Baird J, Riley LA, Simmons T, Coleman-Derr D, Guss AM, Egbert RG. High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration. SCIENCE ADVANCES 2023;9:eade1285. [PMID: 36897939 PMCID: PMC10005180 DOI: 10.1126/sciadv.ade1285] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 02/01/2023] [Indexed: 05/31/2023]
8
Pandey A, Rodriguez ML, Poole W, Murray RM. Characterization of Integrase and Excisionase Activity in a Cell-Free Protein Expression System Using a Modeling and Analysis Pipeline. ACS Synth Biol 2023;12:511-523. [PMID: 36715625 DOI: 10.1021/acssynbio.2c00534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
9
Efficient targeted transgenesis of large donor DNA into multiple mouse genetic backgrounds using bacteriophage Bxb1 integrase. Sci Rep 2022;12:5424. [PMID: 35361849 PMCID: PMC8971409 DOI: 10.1038/s41598-022-09445-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 03/23/2022] [Indexed: 12/12/2022]  Open
10
Hwang S, Lee Y, Kim JH, Kim G, Kim H, Kim W, Cho S, Palsson BO, Cho BK. Streptomyces as Microbial Chassis for Heterologous Protein Expression. Front Bioeng Biotechnol 2022;9:804295. [PMID: 34993191 PMCID: PMC8724576 DOI: 10.3389/fbioe.2021.804295] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 11/30/2021] [Indexed: 12/29/2022]  Open
11
Ibarra-Chávez R, Hansen MF, Pinilla-Redondo R, Seed KD, Trivedi U. Phage satellites and their emerging applications in biotechnology. FEMS Microbiol Rev 2021;45:fuab031. [PMID: 34104956 PMCID: PMC8632786 DOI: 10.1093/femsre/fuab031] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 06/07/2021] [Indexed: 12/11/2022]  Open
12
Chao G, Travis C, Church G. Measurement of large serine integrase enzymatic characteristics in HEK293 cells reveals variability and influence on downstream reporter expression. FEBS J 2021;288:6410-6427. [PMID: 34043859 DOI: 10.1111/febs.16037] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 04/20/2021] [Accepted: 05/25/2021] [Indexed: 11/30/2022]
13
Catone MV, Palomino MM, Legisa DM, Fina Martin J, Monedero García V, Ruzal SM, Allievi MC. Lactic acid production using cheese whey based medium in a stirred tank reactor by a ccpA mutant of Lacticaseibacillus casei. World J Microbiol Biotechnol 2021;37:61. [PMID: 33719024 DOI: 10.1007/s11274-021-03028-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 03/02/2021] [Indexed: 11/24/2022]
14
Askora A, Kawasaki T, Fujie M, Yamada T. In vitro characterization of the site-specific recombination system based on genus Habenivirus ϕRSM small serine integrase. Mol Genet Genomics 2021;296:551-559. [PMID: 33575837 DOI: 10.1007/s00438-021-01762-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 01/27/2021] [Indexed: 10/22/2022]
15
Abe K, Takahashi T, Sato T. Extreme C-terminal element of SprA serine integrase is a potential component of the "molecular toggle switch" which controls the recombination and its directionality. Mol Microbiol 2020;115:1110-1121. [PMID: 33244797 DOI: 10.1111/mmi.14654] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 10/26/2020] [Accepted: 11/21/2020] [Indexed: 12/11/2022]
16
Fan HF, Su BY, Ma CH, Rowley PA, Jayaram M. A bipartite thermodynamic-kinetic contribution by an activating mutation to RDF-independent excision by a phage serine integrase. Nucleic Acids Res 2020;48:6413-6430. [PMID: 32479633 PMCID: PMC7337939 DOI: 10.1093/nar/gkaa401] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 05/02/2020] [Accepted: 05/08/2020] [Indexed: 12/11/2022]  Open
17
Bernabé-Orts JM, Quijano-Rubio A, Vazquez-Vilar M, Mancheño-Bonillo J, Moles-Casas V, Selma S, Gianoglio S, Granell A, Orzaez D. A memory switch for plant synthetic biology based on the phage ϕC31 integration system. Nucleic Acids Res 2020;48:3379-3394. [PMID: 32083668 PMCID: PMC7102980 DOI: 10.1093/nar/gkaa104] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 02/07/2020] [Accepted: 02/10/2020] [Indexed: 02/07/2023]  Open
18
Compatibility of Site-Specific Recombination Units between Mobile Genetic Elements. iScience 2019;23:100805. [PMID: 31926432 PMCID: PMC6957869 DOI: 10.1016/j.isci.2019.100805] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 12/06/2019] [Accepted: 12/19/2019] [Indexed: 12/17/2022]  Open
19
Borgers K, Vandewalle K, Festjens N, Callewaert N. A guide to Mycobacterium mutagenesis. FEBS J 2019;286:3757-3774. [PMID: 31419030 DOI: 10.1111/febs.15041] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 07/05/2019] [Accepted: 08/12/2019] [Indexed: 12/18/2022]
20
Fogg PCM, Younger E, Fernando BD, Khaleel T, Stark WM, Smith MCM. Recombination directionality factor gp3 binds ϕC31 integrase via the zinc domain, potentially affecting the trajectory of the coiled-coil motif. Nucleic Acids Res 2019;46:1308-1320. [PMID: 29228292 PMCID: PMC5814800 DOI: 10.1093/nar/gkx1233] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Accepted: 11/29/2017] [Indexed: 11/24/2022]  Open
21
Ramisetty BCM, Sudhakari PA. Bacterial 'Grounded' Prophages: Hotspots for Genetic Renovation and Innovation. Front Genet 2019;10:65. [PMID: 30809245 PMCID: PMC6379469 DOI: 10.3389/fgene.2019.00065] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 01/24/2019] [Indexed: 01/07/2023]  Open
22
Murphy KC, Nelson SJ, Nambi S, Papavinasasundaram K, Baer CE, Sassetti CM. ORBIT: a New Paradigm for Genetic Engineering of Mycobacterial Chromosomes. mBio 2018;9:e01467-18. [PMID: 30538179 PMCID: PMC6299477 DOI: 10.1128/mbio.01467-18] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Accepted: 10/19/2018] [Indexed: 11/20/2022]  Open
23
Yan B, Pan Y, Jin Z, Liu X, Li W, Sun B. Interstrain transfer of the prophage ϕNM2 in staphylococcal strains. ANN MICROBIOL 2018. [DOI: 10.1007/s13213-018-1397-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]  Open
24
Balabaskaran-Nina P, Desai SA. Diverse target gene modifications in Plasmodium falciparum using Bxb1 integrase and an intronic attB. Parasit Vectors 2018;11:548. [PMID: 30333047 PMCID: PMC6192176 DOI: 10.1186/s13071-018-3129-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Accepted: 10/01/2018] [Indexed: 12/26/2022]  Open
25
Li H, Sharp R, Rutherford K, Gupta K, Van Duyne GD. Serine Integrase attP Binding and Specificity. J Mol Biol 2018;430:4401-4418. [PMID: 30227134 DOI: 10.1016/j.jmb.2018.09.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 09/07/2018] [Accepted: 09/11/2018] [Indexed: 01/31/2023]
26
Anti-phage islands force their target phage to directly mediate island excision and spread. Nat Commun 2018;9:2348. [PMID: 29904071 PMCID: PMC6002521 DOI: 10.1038/s41467-018-04786-5] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Accepted: 05/11/2018] [Indexed: 02/07/2023]  Open
27
CLAG3 Self-Associates in Malaria Parasites and Quantitatively Determines Nutrient Uptake Channels at the Host Membrane. mBio 2018;9:mBio.02293-17. [PMID: 29739907 PMCID: PMC5941077 DOI: 10.1128/mbio.02293-17] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
28
Lei X, Wang L, Zhao G, Ding X. Site-specificity of serine integrase demonstrated by the attB sequence preference of ɸBT1 integrase. FEBS Lett 2018. [PMID: 29512855 DOI: 10.1002/1873-3468.13023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
29
Merrick CA, Zhao J, Rosser SJ. Serine Integrases: Advancing Synthetic Biology. ACS Synth Biol 2018;7:299-310. [PMID: 29316791 DOI: 10.1021/acssynbio.7b00308] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
30
Retraction: Site‐specific recombination of nitrogen‐fixation genes in cyanobacteria by XisF–XisH–XisI complex: Structures and models, William C. Hwang, James W. Golden, Jaime Pascual, Dong Xu, Anton Cheltsov, Adam Godzik. Proteins 2018;86:268. [PMID: 30338965 PMCID: PMC5094899 DOI: 10.1002/prot.24679] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
31
Abe K, Takamatsu T, Sato T. Mechanism of bacterial gene rearrangement: SprA-catalyzed precise DNA recombination and its directionality control by SprB ensure the gene rearrangement and stable expression of spsM during sporulation in Bacillus subtilis. Nucleic Acids Res 2017;45:6669-6683. [PMID: 28535266 PMCID: PMC5499854 DOI: 10.1093/nar/gkx466] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Accepted: 05/12/2017] [Indexed: 12/17/2022]  Open
32
Olorunniji FJ, McPherson AL, Rosser SJ, Smith MCM, Colloms SD, Stark WM. Control of serine integrase recombination directionality by fusion with the directionality factor. Nucleic Acids Res 2017;45:8635-8645. [PMID: 28666339 PMCID: PMC5737554 DOI: 10.1093/nar/gkx567] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Accepted: 06/29/2017] [Indexed: 11/13/2022]  Open
33
Gupta K, Sharp R, Yuan JB, Li H, Van Duyne GD. Coiled-coil interactions mediate serine integrase directionality. Nucleic Acids Res 2017;45:7339-7353. [PMID: 28549184 PMCID: PMC5499577 DOI: 10.1093/nar/gkx474] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Accepted: 05/15/2017] [Indexed: 11/14/2022]  Open
34
Folliard T, Steel H, Prescott TP, Wadhams G, Rothschild LJ, Papachristodoulou A. A Synthetic Recombinase-Based Feedback Loop Results in Robust Expression. ACS Synth Biol 2017;6:1663-1671. [PMID: 28602075 DOI: 10.1021/acssynbio.7b00131] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
35
Control of Recombination Directionality by the Listeria Phage A118 Protein Gp44 and the Coiled-Coil Motif of Its Serine Integrase. J Bacteriol 2017;199:JB.00019-17. [PMID: 28289084 DOI: 10.1128/jb.00019-17] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 03/06/2017] [Indexed: 02/04/2023]  Open
36
Genome Integration and Excision by a New Streptomyces Bacteriophage, ϕJoe. Appl Environ Microbiol 2017;83:AEM.02767-16. [PMID: 28003200 PMCID: PMC5311408 DOI: 10.1128/aem.02767-16] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 12/18/2016] [Indexed: 01/27/2023]  Open
37
Olorunniji FJ, Merrick C, Rosser SJ, Smith MCM, Stark WM, Colloms SD. Multipart DNA Assembly Using Site-Specific Recombinases from the Large Serine Integrase Family. Methods Mol Biol 2017;1642:303-323. [PMID: 28815508 DOI: 10.1007/978-1-4939-7169-5_19] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
38
Pokhilko A, Zhao J, Stark WM, Colloms SD, Ebenhöh O. A simplified mathematical model of directional DNA site-specific recombination by serine integrases. J R Soc Interface 2017;14:20160618. [PMID: 28077763 PMCID: PMC5310728 DOI: 10.1098/rsif.2016.0618] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 12/09/2016] [Indexed: 11/13/2022]  Open
39
Wang X, Tang B, Ye Y, Mao Y, Lei X, Zhao G, Ding X. Bxb1 integrase serves as a highly efficient DNA recombinase in rapid metabolite pathway assembly. Acta Biochim Biophys Sin (Shanghai) 2017;49:44-50. [PMID: 27864282 DOI: 10.1093/abbs/gmw115] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 10/24/2016] [Indexed: 11/13/2022]  Open
40
Fan HF, Hsieh TS, Ma CH, Jayaram M. Single-molecule analysis of ϕC31 integrase-mediated site-specific recombination by tethered particle motion. Nucleic Acids Res 2016;44:10804-10823. [PMID: 27986956 PMCID: PMC5159548 DOI: 10.1093/nar/gkw861] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Revised: 09/11/2016] [Accepted: 09/22/2016] [Indexed: 11/14/2022]  Open
41
Bowyer J, Zhao J, Subsoontorn P, Wong W, Rosser S, Bates D. Mechanistic Modeling of a Rewritable Recombinase Addressable Data Module. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2016;10:1161-1170. [PMID: 27244749 DOI: 10.1109/tbcas.2016.2526668] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
42
Mycobacteriophages as Incubators for Intein Dissemination and Evolution. mBio 2016;7:mBio.01537-16. [PMID: 27703073 PMCID: PMC5050341 DOI: 10.1128/mbio.01537-16] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
43
Keenholtz RA, Grindley NDF, Hatfull GF, Marko JF. Crossover-site sequence and DNA torsional stress control strand interchanges by the Bxb1 site-specific serine recombinase. Nucleic Acids Res 2016;44:8921-8932. [PMID: 27550179 PMCID: PMC5062993 DOI: 10.1093/nar/gkw724] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 08/08/2016] [Indexed: 01/01/2023]  Open
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Pokhilko A, Zhao J, Ebenhöh O, Smith MCM, Stark WM, Colloms SD. The mechanism of ϕC31 integrase directionality: experimental analysis and computational modelling. Nucleic Acids Res 2016;44:7360-72. [PMID: 27387286 PMCID: PMC5009753 DOI: 10.1093/nar/gkw616] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Accepted: 06/28/2016] [Indexed: 02/04/2023]  Open
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Lima-Junior JD, Viana-Niero C, Conde Oliveira DV, Machado GE, Rabello MCDS, Martins-Junior J, Martins LF, Digiampietri LA, da Silva AM, Setubal JC, Russell DA, Jacobs-Sera D, Pope WH, Hatfull GF, Leão SC. Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U. BMC Microbiol 2016;16:111. [PMID: 27316672 PMCID: PMC4912749 DOI: 10.1186/s12866-016-0734-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2015] [Accepted: 06/08/2016] [Indexed: 01/13/2023]  Open
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Phage-encoded Serine Integrases and Other Large Serine Recombinases. Microbiol Spectr 2016;3. [PMID: 26350324 DOI: 10.1128/microbiolspec.mdna3-0059-2014] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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Srivastava V, Thomson J. Gene stacking by recombinases. PLANT BIOTECHNOLOGY JOURNAL 2016;14:471-82. [PMID: 26332944 DOI: 10.1111/pbi.12459] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2015] [Revised: 07/24/2015] [Accepted: 07/28/2015] [Indexed: 05/09/2023]
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Bowyer J, Rosser S, Colloms S, Bates D. Development and experimental validation of a mechanistic model of in vitro DNA recombination. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016;2015:945-8. [PMID: 26736419 DOI: 10.1109/embc.2015.7318519] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Merrick C, Wardrope C, Paget J, Colloms S, Rosser S. Rapid Optimization of Engineered Metabolic Pathways with Serine Integrase Recombinational Assembly (SIRA). Methods Enzymol 2016;575:285-317. [DOI: 10.1016/bs.mie.2016.02.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/06/2022]
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Fernandez-Rodriguez J, Yang L, Gorochowski TE, Gordon DB, Voigt CA. Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability. ACS Synth Biol 2015;4:1361-72. [PMID: 26548807 DOI: 10.1021/acssynbio.5b00170] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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