1
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Li Y. Differential behaviors of calcium-induced calcium release in one dimensional dendrite by Nernst-Planck equation, cable model and pure diffusion model. Cogn Neurodyn 2024; 18:1285-1305. [PMID: 38826668 PMCID: PMC11143177 DOI: 10.1007/s11571-023-09952-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 02/16/2023] [Accepted: 03/08/2023] [Indexed: 06/04/2024] Open
Abstract
The source and dynamics of calcium is the key factor that regulates dendritic integration. Apart from the voltage-gated and ligand-gated calcium influx, an important source of calcium is from inner store of endoplasmic reticulum with a regenerative process of calcium-induced calcium release (CICR). To trigger this process, inositol 1,4,5-trisphosphate (IP3) and calcium are needed to satisfy certain requirements. The aim of our paper is to investigate how the CICR depends on the dynamics of membrane potential. We utilize one dimensional dendritic model to calculate membrane potential by Nernst-Planck Equation (NPE) and cable model and Pure Diffusion (PD) model, computational simulations are carried out to inject the calcium influx by synaptic stimulation and to predict subsequent CICR and calcium wave propagation. Our results demonstrate that CICR initiation and calcium wave propagation have much difference between electro-diffusion process of NPE and cable model. We find that cable model has lower threshold of IP3 stimulation to trigger CICR but is more difficult for calcium propagation than NPE, PD model requires even higher threshold of IP3 to initiate CICR process and calcium duration is shorter than NPE; the regenerative calcium wave propagates with faster speed in NPE than that in cable model and in PD model. Our work addresses the important role of electro-diffusion dynamics of charged ions in regulating CICR process in dendritic structure; and provides theoretical predictions for neurological process which requires sustaining calcium for downstream signaling processes.
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Affiliation(s)
- Yinyun Li
- School of Systems Science, Beijing Normal University, Beijing, 100875 China
- Department of Mathematics and Statistics, Washington State University Vancouver, Vancouver, USA
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2
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Signorelli L, Manzoni A, Sætra MJ. Uncertainty quantification and sensitivity analysis of neuron models with ion concentration dynamics. PLoS One 2024; 19:e0303822. [PMID: 38771746 PMCID: PMC11108148 DOI: 10.1371/journal.pone.0303822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Accepted: 05/01/2024] [Indexed: 05/23/2024] Open
Abstract
This paper provides a comprehensive and computationally efficient case study for uncertainty quantification (UQ) and global sensitivity analysis (GSA) in a neuron model incorporating ion concentration dynamics. We address how challenges with UQ and GSA in this context can be approached and solved, including challenges related to computational cost, parameters affecting the system's resting state, and the presence of both fast and slow dynamics. Specifically, we analyze the electrodiffusive neuron-extracellular-glia (edNEG) model, which captures electrical potentials, ion concentrations (Na+, K+, Ca2+, and Cl-), and volume changes across six compartments. Our methodology includes a UQ procedure assessing the model's reliability and susceptibility to input uncertainty and a variance-based GSA identifying the most influential input parameters. To mitigate computational costs, we employ surrogate modeling techniques, optimized using efficient numerical integration methods. We propose a strategy for isolating parameters affecting the resting state and analyze the edNEG model dynamics under both physiological and pathological conditions. The influence of uncertain parameters on model outputs, particularly during spiking dynamics, is systematically explored. Rapid dynamics of membrane potentials necessitate a focus on informative spiking features, while slower variations in ion concentrations allow a meaningful study at each time point. Our study offers valuable guidelines for future UQ and GSA investigations on neuron models with ion concentration dynamics, contributing to the broader application of such models in computational neuroscience.
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Affiliation(s)
- Letizia Signorelli
- Department of Mathematics, Politecnico di Milano, Milano, Italy
- Department of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway
| | - Andrea Manzoni
- MOX, Department of Mathematics, Politecnico di Milano, Milano, Italy
| | - Marte J. Sætra
- Department of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway
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3
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Li D, Li S, Pan M, Li Q, Song J, Zhang R. The role of extracellular glutamate homeostasis dysregulated by astrocyte in epileptic discharges: a model evidence. Cogn Neurodyn 2024; 18:485-502. [PMID: 38699615 PMCID: PMC11061099 DOI: 10.1007/s11571-023-10001-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 07/26/2023] [Accepted: 08/13/2023] [Indexed: 05/05/2024] Open
Abstract
Glutamate (Glu) is a predominant excitatory neurotransmitter that acts on glutamate receptors to transfer signals in the central nervous system. Abnormally elevated extracellular glutamate levels is closely related to the generation and transition of epileptic seizures. However, there lacks of investigation regarding the role of extracellular glutamate homeostasis dysregulated by astrocyte in neuronal epileptic discharges. According to this, we propose a novel neuron-astrocyte computational model (NAG) by incorporating extracellular Glu concentration dynamics from three aspects of regulatory mechanisms: (1) the Glu uptake through astrocyte EAAT2; (2) the binding and release Glu via activating astrocyte mGluRs; and (3) the Glu free diffusion in the extracellular space. Then the proposed model NAG is analyzed theoretically and numerically to verify the effect of extracellular Glu homeostasis dysregulated by such three regulatory mechanisms on neuronal epileptic discharges. Our results demonstrate that the neuronal epileptic discharges can be aggravated by the downregulation expression of EAAT2, the aberrant activation of mGluRs, and the elevated Glu levels in extracellular micro-environment; as well as various discharge states (including bursting, mixed-mode spiking, and tonic firing) can be transited by their combination. Furthermore, we find that such factors can also alter the bifurcation threshold for the generation and transition of epileptic discharges. The results in this paper can be helpful for researchers to understand the astrocyte role in modulating extracellular Glu homeostasis, and provide theoretical basis for future related experimental studies.
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Affiliation(s)
- Duo Li
- The Medical Big Data Research Center and The School of Mathematics, Northwest University, Xi’an, 710127 China
| | - Sihui Li
- The Medical Big Data Research Center and The School of Mathematics, Northwest University, Xi’an, 710127 China
| | - Min Pan
- The Medical Big Data Research Center and The School of Mathematics, Northwest University, Xi’an, 710127 China
| | - Qiang Li
- The Medical Big Data Research Center and The School of Mathematics, Northwest University, Xi’an, 710127 China
| | - Jiangling Song
- The Medical Big Data Research Center and The School of Mathematics, Northwest University, Xi’an, 710127 China
| | - Rui Zhang
- The Medical Big Data Research Center and The School of Mathematics, Northwest University, Xi’an, 710127 China
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4
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Verardo C, Mele LJ, Selmi L, Palestri P. Finite-element modeling of neuromodulation via controlled delivery of potassium ions using conductive polymer-coated microelectrodes. J Neural Eng 2024; 21:026002. [PMID: 38306702 DOI: 10.1088/1741-2552/ad2581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 02/02/2024] [Indexed: 02/04/2024]
Abstract
Objective. The controlled delivery of potassium is an interesting neuromodulation modality, being potassium ions involved in shaping neuron excitability, synaptic transmission, network synchronization, and playing a key role in pathological conditions like epilepsy and spreading depression. Despite many successful examples of pre-clinical devices able to influence the extracellular potassium concentration, computational frameworks capturing the corresponding impact on neuronal activity are still missing.Approach. We present a finite-element model describing a PEDOT:PSS-coated microelectrode (herein, simplyionic actuator) able to release potassium and thus modulate the activity of a cortical neuron in anin-vitro-like setting. The dynamics of ions in the ionic actuator, the neural membrane, and the cellular fluids are solved self-consistently.Main results. We showcase the capability of the model to describe on a physical basis the modulation of the intrinsic excitability of the cell and of the synaptic transmission following the electro-ionic stimulation produced by the actuator. We consider three case studies for the ionic actuator with different levels of selectivity to potassium: ideal selectivity, no selectivity, and selectivity achieved by embedding ionophores in the polymer.Significance. This work is the first step toward a comprehensive computational framework aimed to investigate novel neuromodulation devices targeting specific ionic species, as well as to optimize their design and performance, in terms of the induced modulation of neural activity.
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Affiliation(s)
- Claudio Verardo
- Polytechnic Department of Engineering and Architecture, Università degli Studi di Udine, Udine, Italy
- BioRobotics Institute and Department of Excellence in Robotics and AI, Scuola Superiore Sant'Anna, Pisa, Italy
| | - Leandro Julian Mele
- Polytechnic Department of Engineering and Architecture, Università degli Studi di Udine, Udine, Italy
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, United States of America
| | - Luca Selmi
- Department of Engineering "Enzo Ferrari", Università degli Studi di Modena e Reggio Emilia, Modena, Italy
| | - Pierpaolo Palestri
- Polytechnic Department of Engineering and Architecture, Università degli Studi di Udine, Udine, Italy
- Department of Engineering "Enzo Ferrari", Università degli Studi di Modena e Reggio Emilia, Modena, Italy
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5
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Hanssen KØ, Grødem S, Fyhn M, Hafting T, Einevoll GT, Ness TV, Halnes G. Responses in fast-spiking interneuron firing rates to parameter variations associated with degradation of perineuronal nets. J Comput Neurosci 2023; 51:283-298. [PMID: 37058180 PMCID: PMC10182141 DOI: 10.1007/s10827-023-00849-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 03/01/2023] [Accepted: 03/10/2023] [Indexed: 04/15/2023]
Abstract
The perineuronal nets (PNNs) are sugar coated protein structures that encapsulate certain neurons in the brain, such as parvalbumin positive (PV) inhibitory neurons. As PNNs are theorized to act as a barrier to ion transport, they may effectively increase the membrane charge-separation distance, thereby affecting the membrane capacitance. Tewari et al. (2018) found that degradation of PNNs induced a 25%-50% increase in membrane capacitance [Formula: see text] and a reduction in the firing rates of PV-cells. In the current work, we explore how changes in [Formula: see text] affects the firing rate in a selection of computational neuron models, ranging in complexity from a single compartment Hodgkin-Huxley model to morphologically detailed PV-neuron models. In all models, an increased [Formula: see text] lead to reduced firing, but the experimentally reported increase in [Formula: see text] was not alone sufficient to explain the experimentally reported reduction in firing rate. We therefore hypothesized that PNN degradation in the experiments affected not only [Formula: see text], but also ionic reversal potentials and ion channel conductances. In simulations, we explored how various model parameters affected the firing rate of the model neurons, and identified which parameter variations in addition to [Formula: see text] that are most likely candidates for explaining the experimentally reported reduction in firing rate.
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Affiliation(s)
- Kine Ødegård Hanssen
- Department of Physics, University of Oslo, Oslo, Norway.
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway.
| | - Sverre Grødem
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Biosciences, University of Oslo, Oslo, Norway
| | - Marianne Fyhn
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Biosciences, University of Oslo, Oslo, Norway
| | - Torkel Hafting
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway
| | - Gaute T Einevoll
- Department of Physics, University of Oslo, Oslo, Norway
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Physics, Norwegian University of Life Sciences, Ås, Norway
| | - Torbjørn Vefferstad Ness
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Physics, Norwegian University of Life Sciences, Ås, Norway
| | - Geir Halnes
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Physics, Norwegian University of Life Sciences, Ås, Norway
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6
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Guerrier C, Dellazizzo Toth T, Galtier N, Haas K. An Algorithm Based on a Cable-Nernst Planck Model Predicting Synaptic Activity throughout the Dendritic Arbor with Micron Specificity. Neuroinformatics 2023; 21:207-220. [PMID: 36348198 DOI: 10.1007/s12021-022-09609-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/02/2022] [Indexed: 11/09/2022]
Abstract
Recent technological advances have enabled the recording of neurons in intact circuits with a high spatial and temporal resolution, creating the need for modeling with the same precision. In particular, the development of ultra-fast two-photon microscopy combined with fluorescence-based genetically-encoded Ca2+-indicators allows capture of full-dendritic arbor and somatic responses associated with synaptic input and action potential output. The complexity of dendritic arbor structures and distributed patterns of activity over time results in the generation of incredibly rich 4D datasets that are challenging to analyze (Sakaki et al. in Frontiers in Neural Circuits 14:33, 2020). Interpreting neural activity from fluorescence-based Ca2+ biosensors is challenging due to non-linear interactions between several factors influencing intracellular calcium ion concentration and its binding to sensors, including the ionic dynamics driven by diffusion, electrical gradients and voltage-gated conductances. To investigate those dynamics, we designed a model based on a Cable-like equation coupled to the Nernst-Planck equations for ionic fluxes in electrolytes. We employ this model to simulate signal propagation and ionic electrodiffusion across a dendritic arbor. Using these simulation results, we then designed an algorithm to detect synapses from Ca2+ imaging datasets. We finally apply this algorithm to experimental Ca2+-indicator datasets from neurons expressing jGCaMP7s (Dana et al. in Nature Methods 16:649-657, 2019), using full-dendritic arbor sampling in vivo in the Xenopus laevis optic tectum using fast random-access two-photon microscopy. Our model reproduces the dynamics of visual stimulus-evoked jGCaMP7s-mediated calcium signals observed experimentally, and the resulting algorithm allows prediction of the location of synapses across the dendritic arbor. Our study provides a way to predict synaptic activity and location on dendritic arbors, from fluorescence data in the full dendritic arbor of a neuron recorded in the intact and awake developing vertebrate brain.
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Affiliation(s)
- Claire Guerrier
- Université Côte d'azur, LJAD, CNRS UMR7351, Nice, France. .,CNRS - IRL3457, CRM, Université de Montréal, Montréal, Canada.
| | | | | | - Kurt Haas
- Djavad Mowafaghian Centre for Brain Health, UBC - Vancouver, Vancouver, Canada
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7
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Superconducting Bio-Inspired Au-Nanowire-Based Neurons. NANOMATERIALS 2022; 12:nano12101671. [PMID: 35630895 PMCID: PMC9147065 DOI: 10.3390/nano12101671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 04/27/2022] [Accepted: 05/10/2022] [Indexed: 02/01/2023]
Abstract
High-performance modeling of neurophysiological processes is an urgent task that requires new approaches to information processing. In this context, two- and three-junction superconducting quantum interferometers with Josephson weak links based on gold nanowires are fabricated and investigated experimentally. The studied cells are proposed for the implementation of bio-inspired neurons—high-performance, energy-efficient, and compact elements of neuromorphic processor. The operation modes of an advanced artificial neuron capable of generating the burst firing activation patterns are explored theoretically. A comparison with the Izhikevich mathematical model of biological neurons is carried out.
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8
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Membrane electrical properties of mouse hippocampal CA1 pyramidal neurons during strong inputs. Biophys J 2022; 121:644-657. [PMID: 34999132 PMCID: PMC8873947 DOI: 10.1016/j.bpj.2022.01.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 09/21/2021] [Accepted: 01/05/2022] [Indexed: 11/24/2022] Open
Abstract
In this work, we highlight an electrophysiological feature often observed in recordings from mouse CA1 pyramidal cells that has so far been ignored by experimentalists and modelers. It consists of a large and dynamic increase in the depolarization baseline (i.e., the minimum value of the membrane potential between successive action potentials during a sustained input) in response to strong somatic current injections. Such an increase can directly affect neurotransmitter release properties and, more generally, the efficacy of synaptic transmission. However, it cannot be explained by any currently available conductance-based computational model. Here we present a model addressing this issue, demonstrating that experimental recordings can be reproduced by assuming that an input current modifies, in a time-dependent manner, the electrical and permeability properties of the neuron membrane by shifting the ionic reversal potentials and channel kinetics. For this reason, we propose that any detailed model of ion channel kinetics for neurons exhibiting this characteristic should be adapted to correctly represent the response and the synaptic integration process during strong and sustained inputs.
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9
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Computing Extracellular Electric Potentials from Neuronal Simulations. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2022; 1359:179-199. [DOI: 10.1007/978-3-030-89439-9_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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10
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Ellingsrud AJ, Boullé N, Farrell PE, Rognes ME. Accurate numerical simulation of electrodiffusion and water movement in brain tissue. MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA 2021; 38:516-551. [PMID: 34791309 DOI: 10.1093/imammb/dqab016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 08/09/2021] [Accepted: 10/19/2021] [Indexed: 12/19/2022]
Abstract
Mathematical modelling of ionic electrodiffusion and water movement is emerging as a powerful avenue of investigation to provide a new physiological insight into brain homeostasis. However, in order to provide solid answers and resolve controversies, the accuracy of the predictions is essential. Ionic electrodiffusion models typically comprise non-trivial systems of non-linear and highly coupled partial and ordinary differential equations that govern phenomena on disparate time scales. Here, we study numerical challenges related to approximating these systems. We consider a homogenized model for electrodiffusion and osmosis in brain tissue and present and evaluate different associated finite element-based splitting schemes in terms of their numerical properties, including accuracy, convergence and computational efficiency for both idealized scenarios and for the physiologically relevant setting of cortical spreading depression (CSD). We find that the schemes display optimal convergence rates in space for problems with smooth manufactured solutions. However, the physiological CSD setting is challenging: we find that the accurate computation of CSD wave characteristics (wave speed and wave width) requires a very fine spatial and fine temporal resolution.
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Affiliation(s)
| | - Nicolas Boullé
- Mathematical Institute, University of Oxford, Oxford, UK
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11
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Niemeyer N, Schleimer JH, Schreiber S. Biophysical models of intrinsic homeostasis: Firing rates and beyond. Curr Opin Neurobiol 2021; 70:81-88. [PMID: 34454303 DOI: 10.1016/j.conb.2021.07.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 06/14/2021] [Accepted: 07/14/2021] [Indexed: 12/01/2022]
Abstract
In view of ever-changing conditions both in the external world and in intrinsic brain states, maintaining the robustness of computations poses a challenge, adequate solutions to which we are only beginning to understand. At the level of cell-intrinsic properties, biophysical models of neurons permit one to identify relevant physiological substrates that can serve as regulators of neuronal excitability and to test how feedback loops can stabilize crucial variables such as long-term calcium levels and firing rates. Mathematical theory has also revealed a rich set of complementary computational properties arising from distinct cellular dynamics and even shaping processing at the network level. Here, we provide an overview over recently explored homeostatic mechanisms derived from biophysical models and hypothesize how multiple dynamical characteristics of cells, including their intrinsic neuronal excitability classes, can be stably controlled.
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Affiliation(s)
- Nelson Niemeyer
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany; Einstein Center for Neurosciences Berlin, Charitéplatz 1, 10117, Berlin, Germany; Bernstein Center for Computational Neuroscience, 10115, Berlin, Germany
| | - Jan-Hendrik Schleimer
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany; Bernstein Center for Computational Neuroscience, 10115, Berlin, Germany
| | - Susanne Schreiber
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany; Einstein Center for Neurosciences Berlin, Charitéplatz 1, 10117, Berlin, Germany; Bernstein Center for Computational Neuroscience, 10115, Berlin, Germany.
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12
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Sætra MJ, Einevoll GT, Halnes G. An electrodiffusive neuron-extracellular-glia model for exploring the genesis of slow potentials in the brain. PLoS Comput Biol 2021; 17:e1008143. [PMID: 34270543 PMCID: PMC8318289 DOI: 10.1371/journal.pcbi.1008143] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 07/28/2021] [Accepted: 06/28/2021] [Indexed: 11/29/2022] Open
Abstract
Within the computational neuroscience community, there has been a focus on simulating the electrical activity of neurons, while other components of brain tissue, such as glia cells and the extracellular space, are often neglected. Standard models of extracellular potentials are based on a combination of multicompartmental models describing neural electrodynamics and volume conductor theory. Such models cannot be used to simulate the slow components of extracellular potentials, which depend on ion concentration dynamics, and the effect that this has on extracellular diffusion potentials and glial buffering currents. We here present the electrodiffusive neuron-extracellular-glia (edNEG) model, which we believe is the first model to combine compartmental neuron modeling with an electrodiffusive framework for intra- and extracellular ion concentration dynamics in a local piece of neuro-glial brain tissue. The edNEG model (i) keeps track of all intraneuronal, intraglial, and extracellular ion concentrations and electrical potentials, (ii) accounts for action potentials and dendritic calcium spikes in neurons, (iii) contains a neuronal and glial homeostatic machinery that gives physiologically realistic ion concentration dynamics, (iv) accounts for electrodiffusive transmembrane, intracellular, and extracellular ionic movements, and (v) accounts for glial and neuronal swelling caused by osmotic transmembrane pressure gradients. The edNEG model accounts for the concentration-dependent effects on ECS potentials that the standard models neglect. Using the edNEG model, we analyze these effects by splitting the extracellular potential into three components: one due to neural sink/source configurations, one due to glial sink/source configurations, and one due to extracellular diffusive currents. Through a series of simulations, we analyze the roles played by the various components and how they interact in generating the total slow potential. We conclude that the three components are of comparable magnitude and that the stimulus conditions determine which of the components that dominate.
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Affiliation(s)
- Marte J. Sætra
- Department of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway
| | - Gaute T. Einevoll
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Physics, University of Oslo, Oslo, Norway
- Department of Physics, Norwegian University of Life Sciences, Ås, Norway
| | - Geir Halnes
- Centre for Integrative Neuroplasticity, University of Oslo, Oslo, Norway
- Department of Physics, Norwegian University of Life Sciences, Ås, Norway
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13
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Kalia M, Meijer HGE, van Gils SA, van Putten MJAM, Rose CR. Ion dynamics at the energy-deprived tripartite synapse. PLoS Comput Biol 2021; 17:e1009019. [PMID: 34143772 PMCID: PMC8244923 DOI: 10.1371/journal.pcbi.1009019] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 06/30/2021] [Accepted: 04/28/2021] [Indexed: 01/09/2023] Open
Abstract
The anatomical and functional organization of neurons and astrocytes at 'tripartite synapses' is essential for reliable neurotransmission, which critically depends on ATP. In low energy conditions, synaptic transmission fails, accompanied by a breakdown of ion gradients, changes in membrane potentials and cell swelling. The resulting cellular damage and cell death are causal to the often devastating consequences of an ischemic stroke. The severity of ischemic damage depends on the age and the brain region in which a stroke occurs, but the reasons for this differential vulnerability are far from understood. In the present study, we address this question by developing a comprehensive biophysical model of a glutamatergic synapse to identify key determinants of synaptic failure during energy deprivation. Our model is based on fundamental biophysical principles, includes dynamics of the most relevant ions, i.e., Na+, K+, Ca2+, Cl- and glutamate, and is calibrated with experimental data. It confirms the critical role of the Na+/K+-ATPase in maintaining ion gradients, membrane potentials and cell volumes. Our simulations demonstrate that the system exhibits two stable states, one physiological and one pathological. During energy deprivation, the physiological state may disappear, forcing a transit to the pathological state, which can be reverted when blocking voltage-gated Na+ and K+ channels. Our model predicts that the transition to the pathological state is favoured if the extracellular space fraction is small. A reduction in the extracellular space volume fraction, as, e.g. observed with ageing, will thus promote the brain's susceptibility to ischemic damage. Our work provides new insights into the brain's ability to recover from energy deprivation, with translational relevance for diagnosis and treatment of ischemic strokes.
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Affiliation(s)
- Manu Kalia
- Applied Analysis, Department of Applied Mathematics, University of Twente, Enschede, The Netherlands
- * E-mail:
| | - Hil G. E. Meijer
- Applied Analysis, Department of Applied Mathematics, University of Twente, Enschede, The Netherlands
| | - Stephan A. van Gils
- Applied Analysis, Department of Applied Mathematics, University of Twente, Enschede, The Netherlands
| | | | - Christine R. Rose
- Institute of Neurobiology, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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14
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Lombardi A, Jedlicka P, Luhmann HJ, Kilb W. Coincident glutamatergic depolarizations enhance GABAA receptor-dependent Cl- influx in mature and suppress Cl- efflux in immature neurons. PLoS Comput Biol 2021; 17:e1008573. [PMID: 33465082 PMCID: PMC7845986 DOI: 10.1371/journal.pcbi.1008573] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 01/29/2021] [Accepted: 11/30/2020] [Indexed: 11/19/2022] Open
Abstract
The impact of GABAergic transmission on neuronal excitability depends on the Cl--gradient across membranes. However, the Cl--fluxes through GABAA receptors alter the intracellular Cl- concentration ([Cl-]i) and in turn attenuate GABAergic responses, a process termed ionic plasticity. Recently it has been shown that coincident glutamatergic inputs significantly affect ionic plasticity. Yet how the [Cl-]i changes depend on the properties of glutamatergic inputs and their spatiotemporal relation to GABAergic stimuli is unknown. To investigate this issue, we used compartmental biophysical models of Cl- dynamics simulating either a simple ball-and-stick topology or a reconstructed CA3 neuron. These computational experiments demonstrated that glutamatergic co-stimulation enhances GABA receptor-mediated Cl- influx at low and attenuates or reverses the Cl- efflux at high initial [Cl-]i. The size of glutamatergic influence on GABAergic Cl--fluxes depends on the conductance, decay kinetics, and localization of glutamatergic inputs. Surprisingly, the glutamatergic shift in GABAergic Cl--fluxes is invariant to latencies between GABAergic and glutamatergic inputs over a substantial interval. In agreement with experimental data, simulations in a reconstructed CA3 pyramidal neuron with physiological patterns of correlated activity revealed that coincident glutamatergic synaptic inputs contribute significantly to the activity-dependent [Cl-]i changes. Whereas the influence of spatial correlation between distributed glutamatergic and GABAergic inputs was negligible, their temporal correlation played a significant role. In summary, our results demonstrate that glutamatergic co-stimulation had a substantial impact on ionic plasticity of GABAergic responses, enhancing the attenuation of GABAergic inhibition in the mature nervous systems, but suppressing GABAergic [Cl-]i changes in the immature brain. Therefore, glutamatergic shift in GABAergic Cl--fluxes should be considered as a relevant factor of short-term plasticity. Information processing in the brain requires that excitation and inhibition are balanced. The main inhibitory neurotransmitter in the brain is gamma-amino-butyric acid (GABA). GABA actions depend on the Cl--gradient, but activation of ionotropic GABA receptors causes Cl--fluxes and thus reduces GABAergic inhibition. Here, we investigated how a coincident membrane depolarization by excitatory glutamatergic synapses influences GABA-induced Cl--fluxes using a biophysical compartmental model of Cl- dynamics, simulating either simple or realistic neuron topologies. We demonstrate that glutamatergic co-stimulation directly affects GABA-induced Cl--fluxes, with the size of glutamatergic effects depending on the conductance, the decay kinetics, and localization of glutamatergic inputs. We also show that the glutamatergic shift in GABAergic Cl--fluxes is surprisingly stable over a substantial range of latencies between glutamatergic and GABAergic inputs. We conclude from these results that glutamatergic co-stimulation alters GABAergic Cl--fluxes and in turn affects the strength of GABAergic inhibition. These coincidence-dependent ionic changes should be considered as a relevant factor of short-term plasticity in the CNS.
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Affiliation(s)
- Aniello Lombardi
- Institute of Physiology, University Medical Center Mainz, Johannes Gutenberg University, Mainz, Germany
| | - Peter Jedlicka
- ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany
- Institute of Clinical Neuroanatomy, Neuroscience Center, Goethe University, Frankfurt/Main, Germany
- Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany
| | - Heiko J. Luhmann
- Institute of Physiology, University Medical Center Mainz, Johannes Gutenberg University, Mainz, Germany
| | - Werner Kilb
- Institute of Physiology, University Medical Center Mainz, Johannes Gutenberg University, Mainz, Germany
- * E-mail:
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