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Lee S, Chung WG, Jeong H, Cui G, Kim E, Lim JA, Seo H, Kwon YW, Byeon SH, Lee J, Park JU. Electrophysiological Analysis of Retinal Organoid Development Using 3D Microelectrodes of Liquid Metals. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024:e2404428. [PMID: 38896876 DOI: 10.1002/adma.202404428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 06/17/2024] [Indexed: 06/21/2024]
Abstract
Despite of the substantial potential of human-derived retinal organoids, the degeneration of retinal ganglion cells (RGCs) during maturation limits their utility in assessing the functionality of later-born retinal cell subtypes. Additionally, conventional analyses primarily rely on fluorescent emissions, which limits the detection of actual cell functionality while risking damage to the 3D cytoarchitecture of organoids. Here, an electrophysiological analysis is presented to monitor RGC development in early to mid-stage retinal organoids, and compare distinct features with fully-mature mouse retina. This approach utilizes high-resolution 3D printing of liquid-metal microelectrodes, enabling precise targeting of specific inner retinal layers within organoids. The adaptable distribution and softness of these microelectrodes facilitate the spatiotemporal recording of inner retinal signals. This study not only demonstrates the functional properties of RGCs in retinal organoid development but also provides insights into their synaptic connectivity, reminiscent of fetal native retinas. Further comparison with fully-mature mouse retina in vivo verifies the organoid features, highlighting the potential of early-stage retinal organoids in biomedical research.
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Affiliation(s)
- Sanghoon Lee
- Department of Materials Science & Engineering, Yonsei University, Seoul, 03722, Republic of Korea
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul, 03722, Republic of Korea
- Graduate Program of Nano Biomedical Engineering (NanoBME), Advanced Science Institute, Yonsei University, Seoul, 03722, Republic of Korea
| | - Won Gi Chung
- Department of Materials Science & Engineering, Yonsei University, Seoul, 03722, Republic of Korea
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul, 03722, Republic of Korea
- Graduate Program of Nano Biomedical Engineering (NanoBME), Advanced Science Institute, Yonsei University, Seoul, 03722, Republic of Korea
| | - Han Jeong
- Institute of Vision Research, Department of Ophthalmology, Severance Eye Hospital, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
- Brain Korea 21 Project for Medical Science, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
| | - Gang Cui
- Institute of Vision Research, Department of Ophthalmology, Severance Eye Hospital, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
| | - Enji Kim
- Department of Materials Science & Engineering, Yonsei University, Seoul, 03722, Republic of Korea
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul, 03722, Republic of Korea
- Graduate Program of Nano Biomedical Engineering (NanoBME), Advanced Science Institute, Yonsei University, Seoul, 03722, Republic of Korea
| | - Jeong Ah Lim
- Institute of Vision Research, Department of Ophthalmology, Severance Eye Hospital, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
| | - Hunkyu Seo
- Department of Materials Science & Engineering, Yonsei University, Seoul, 03722, Republic of Korea
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul, 03722, Republic of Korea
- Graduate Program of Nano Biomedical Engineering (NanoBME), Advanced Science Institute, Yonsei University, Seoul, 03722, Republic of Korea
| | - Yong Won Kwon
- Department of Materials Science & Engineering, Yonsei University, Seoul, 03722, Republic of Korea
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul, 03722, Republic of Korea
- Graduate Program of Nano Biomedical Engineering (NanoBME), Advanced Science Institute, Yonsei University, Seoul, 03722, Republic of Korea
| | - Suk Ho Byeon
- Institute of Vision Research, Department of Ophthalmology, Severance Eye Hospital, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
- Brain Korea 21 Project for Medical Science, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
| | - Junwon Lee
- Institute of Vision Research, Department of Ophthalmology, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul, 06273, Republic of Korea
| | - Jang-Ung Park
- Department of Materials Science & Engineering, Yonsei University, Seoul, 03722, Republic of Korea
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul, 03722, Republic of Korea
- Graduate Program of Nano Biomedical Engineering (NanoBME), Advanced Science Institute, Yonsei University, Seoul, 03722, Republic of Korea
- Department of Neurosurgery, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea
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Rathbun DL, Jalligampala A, Zrenner E, Hosseinzadeh Z. Improvements for recording retinal function with Microelectrode Arrays. MethodsX 2024; 12:102543. [PMID: 38313698 PMCID: PMC10834997 DOI: 10.1016/j.mex.2023.102543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Accepted: 12/28/2023] [Indexed: 02/06/2024] Open
Abstract
A microelectrode array (MEA) is a configuration of multiple electrodes that enables the concurrent targeting of multiple sites for extracellular recording and stimulation. By utilizing light pulses or electrical stimulations, MEA recordings unveil the complex patterns of electrical activities that arise from the signaling processes within the retinal network. Here, we present a stepwise approach for using microelectrode arrays (MEAs) for recording action potentials from the mouse retina in response to electrical and light stimuli. We provide detailed techniques accompanied by description of a custom optical system, example recordings, troubleshooting guidelines, and data processing methods including spike sorting and code resources for analyzing light and electrical responses. The comprehensive nature of this paper aims to guide researchers in utilizing MEAs effectively for investigating retinal functionality. In particular, it can be easy to have a MEA experiment fail, but hard to identify the source of the failure. This paper is meant to demystify that process. It includes:•A description of MEA setup, recording, and spike data validation.•A troubleshooting guide for common failure modes in MEA recordings from mouse retina.•Spike detection and sorting to precisely extract distinctive action potential.
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Affiliation(s)
- D L Rathbun
- Department of Ophthalmology, Detroit Institute of Ophthalmology, Henry Ford Health System, Detroit, MI 48202, USA
| | - A Jalligampala
- Department of Ophthalmology and Visual Sciences, University of Louisville, Louisville, KY 40202, USA
| | - E Zrenner
- Institute for Ophthalmic Research, Eberhard Karls University, 72076 Tübingen, Germany
- Werner Reichardt Centre for Integrative Neuroscience (CIN), 72076 Tübingen, Germany
| | - Z Hosseinzadeh
- Department of Ophthalmology and Eye Hospital, University of Leipzig, Leipzig, Germany
- Department of Ophthalmology, Radboud University Medical Center, Nijmegen, The Netherlands
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Corna A, Cojocaru AE, Bui MT, Werginz P, Zeck G. Avoidance of axonal stimulation with sinusoidal epiretinal stimulation. J Neural Eng 2024; 21:026036. [PMID: 38547529 DOI: 10.1088/1741-2552/ad38de] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 03/28/2024] [Indexed: 04/11/2024]
Abstract
Objective.Neuromodulation, particularly electrical stimulation, necessitates high spatial resolution to achieve artificial vision with high acuity. In epiretinal implants, this is hindered by the undesired activation of distal axons. Here, we investigate focal and axonal activation of retinal ganglion cells (RGCs) in epiretinal configuration for different sinusoidal stimulation frequencies.Approach.RGC responses to epiretinal sinusoidal stimulation at frequencies between 40 and 100 Hz were tested inex-vivophotoreceptor degenerated (rd10) isolated retinae. Experiments were conducted using a high-density CMOS-based microelectrode array, which allows to localize RGC cell bodies and axons at high spatial resolution.Main results.We report current and charge density thresholds for focal and distal axon activation at stimulation frequencies of 40, 60, 80, and 100 Hz for an electrode size with an effective area of 0.01 mm2. Activation of distal axons is avoided up to a stimulation amplitude of 0.23µA (corresponding to 17.3µC cm-2) at 40 Hz and up to a stimulation amplitude of 0.28µA (14.8µC cm-2) at 60 Hz. The threshold ratio between focal and axonal activation increases from 1.1 for 100 Hz up to 1.6 for 60 Hz, while at 40 Hz stimulation frequency, almost no axonal responses were detected in the tested intensity range. With the use of synaptic blockers, we demonstrate the underlying direct activation mechanism of the ganglion cells. Finally, using high-resolution electrical imaging and label-free electrophysiological axon tracking, we demonstrate the extent of activation in axon bundles.Significance.Our results can be exploited to define a spatially selective stimulation strategy avoiding axonal activation in future retinal implants, thereby solving one of the major limitations of artificial vision. The results may be extended to other fields of neuroprosthetics to achieve selective focal electrical stimulation.
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Affiliation(s)
- Andrea Corna
- Institute of Biomedical Electronics, TU Wien, Vienna, Austria
| | | | - Mai Thu Bui
- Institute of Biomedical Electronics, TU Wien, Vienna, Austria
| | - Paul Werginz
- Institute of Biomedical Electronics, TU Wien, Vienna, Austria
| | - Günther Zeck
- Institute of Biomedical Electronics, TU Wien, Vienna, Austria
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Xu A, Beyeler M. Retinal ganglion cells undergo cell type-specific functional changes in a computational model of cone-mediated retinal degeneration. Front Neurosci 2023; 17:1147729. [PMID: 37274203 PMCID: PMC10233015 DOI: 10.3389/fnins.2023.1147729] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 05/02/2023] [Indexed: 06/06/2023] Open
Abstract
Introduction Understanding the retina in health and disease is a key issue for neuroscience and neuroengineering applications such as retinal prostheses. During degeneration, the retinal network undergoes complex and multi-stage neuroanatomical alterations, which drastically impact the retinal ganglion cell (RGC) response and are of clinical importance. Here we present a biophysically detailed in silico model of the cone pathway in the retina that simulates the network-level response to both light and electrical stimulation. Methods The model included 11, 138 cells belonging to nine different cell types (cone photoreceptors, horizontal cells, ON/OFF bipolar cells, ON/OFF amacrine cells, and ON/OFF ganglion cells) confined to a 300 × 300 × 210μm patch of the parafoveal retina. After verifying that the model reproduced seminal findings about the light response of retinal ganglion cells (RGCs), we systematically introduced anatomical and neurophysiological changes (e.g., reduced light sensitivity of photoreceptor, cell death, cell migration) to the network and studied their effect on network activity. Results The model was not only able to reproduce common findings about RGC activity in the degenerated retina, such as hyperactivity and increased electrical thresholds, but also offers testable predictions about the underlying neuroanatomical mechanisms. Discussion Overall, our findings demonstrate how biophysical changes typified by cone-mediated retinal degeneration may impact retinal responses to light and electrical stimulation. These insights may further our understanding of retinal processing and inform the design of retinal prostheses.
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Affiliation(s)
- Aiwen Xu
- Department of Computer Science, University of California, California, Santa Barbara, CA, United States
| | - Michael Beyeler
- Department of Computer Science, University of California, California, Santa Barbara, CA, United States
- Department of Psychological & Brain Sciences, University of California, California, Santa Barbara, CA, United States
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Xu A, Beyeler M. Retinal ganglion cells undergo cell typeâ€"specific functional changes in a biophysically detailed model of retinal degeneration. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.01.13.523982. [PMID: 36711897 PMCID: PMC9882163 DOI: 10.1101/2023.01.13.523982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Understanding the retina in health and disease is a key issue for neuroscience and neuroengineering applications such as retinal prostheses. During degeneration, the retinal network undergoes complex and multi-stage neuroanatomical alterations, which drastically impact the retinal ganglion cell (RGC) response and are of clinical importance. Here we present a biophysically detailed in silico model of retinal degeneration that simulates the network-level response to both light and electrical stimulation as a function of disease progression. The model is not only able to reproduce common findings about RGC activity in the degenerated retina, such as hyperactivity and increased electrical thresholds, but also offers testable predictions about the underlying neuroanatomical mechanisms. Overall, our findings demonstrate how biophysical changes associated with retinal degeneration affect retinal responses to both light and electrical stimulation, which may further our understanding of visual processing in the retina as well as inform the design and application of retinal prostheses.
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Extraretinal Spike Normalization in Retinal Ganglion Cell Axons. eNeuro 2020; 7:ENEURO.0504-19.2020. [PMID: 32086286 PMCID: PMC7110362 DOI: 10.1523/eneuro.0504-19.2020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 01/24/2020] [Accepted: 02/10/2020] [Indexed: 11/21/2022] Open
Abstract
Spike conduction velocity characteristically differs between myelinated and unmyelinated axons. Here we test whether spikes of myelinated and unmyelinated paths differ in other respects by measuring rat retinal ganglion cell (RGC) spike duration in the intraretinal, unmyelinated nerve fiber layer and the extraretinal, myelinated optic nerve and optic chiasm. We find that rapid spike firing and illumination broaden spikes in intraretinal axons but not in extraretinal axons. RGC axons thus initiate spikes intraretinally and normalize spike duration extraretinally. Additionally, we analyze spikes that were recorded in a previous study of rhesus macaque retinogeniculate transmission and find that rapid spike firing does not broaden spikes in optic tract. The spike normalization we find reduces the number of spike properties that can change during RGC light responses. However, this is not because identical spikes fire in all axons. Instead, our recordings show that different subtypes of RGC generate axonal spikes of different durations and that the differences resemble spike duration increases that alter neurotransmitter release from other neurons. Moreover, previous studies have shown that RGC spikes of shorter duration can fire at higher maximum frequencies. These properties should facilitate signal transfer by different mechanisms at RGC synapses onto subcortical target neurons.
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Obien MEJ, Frey U. Large-Scale, High-Resolution Microelectrode Arrays for Interrogation of Neurons and Networks. ADVANCES IN NEUROBIOLOGY 2019; 22:83-123. [PMID: 31073933 DOI: 10.1007/978-3-030-11135-9_4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
High-density microelectrode arrays (HD-MEAs) are increasingly being used for the observation and manipulation of neurons and networks in vitro. Large-scale electrode arrays allow for long-term extracellular recording of the electrical activity from thousands of neurons simultaneously. Beyond population activity, it has also become possible to extract information of single neurons at subcellular level (e.g., the propagation of action potentials along axons). In effect, HD-MEAs have become an electrical imaging platform for label-free extraction of the structure and activation of cells in cultures and tissues. The quality of HD-MEA data depends on the resolution of the electrode array and the signal-to-noise ratio. In this chapter, we begin with an introduction to HD-MEA signals. We provide an overview of the developments on complementary metal-oxide-semiconductor or CMOS-based HD-MEA technology. We also discuss the factors affecting the performance of HD-MEAs and the trending application requirements that drive the efforts for future devices. We conclude with an outlook on the potential of HD-MEAs for advancing basic neuroscience and drug discovery.
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Affiliation(s)
- Marie Engelene J Obien
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland.
- MaxWell Biosystems, Basel, Switzerland.
| | - Urs Frey
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland
- MaxWell Biosystems, Basel, Switzerland
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Obien MEJ, Hierlemann A, Frey U. Accurate signal-source localization in brain slices by means of high-density microelectrode arrays. Sci Rep 2019; 9:788. [PMID: 30692552 PMCID: PMC6349853 DOI: 10.1038/s41598-018-36895-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 11/28/2018] [Indexed: 12/12/2022] Open
Abstract
Extracellular recordings by means of high-density microelectrode arrays (HD-MEAs) have become a powerful tool to resolve subcellular details of single neurons in active networks grown from dissociated cells. To extend the application of this technology to slice preparations, we developed models describing how extracellular signals, produced by neuronal cells in slices, are detected by microelectrode arrays. The models help to analyze and understand the electrical-potential landscape in an in vitro HD-MEA-recording scenario based on point-current sources. We employed two modeling schemes, (i) a simple analytical approach, based on the method of images (MoI), and (ii) an approach, based on finite-element methods (FEM). We compared and validated the models with large-scale, high-spatiotemporal-resolution recordings of slice preparations by means of HD-MEAs. We then developed a model-based localization algorithm and compared the performance of MoI and FEM models. Both models provided accurate localization results and a comparable and negligible systematic error, when the point source was in saline, a condition similar to cell-culture experiments. Moreover, the relative random error in the x-y-z-localization amounted only up to 4.3% for z-distances up to 200 μm from the HD-MEA surface. In tissue, the systematic errors of both, MoI and FEM models were significantly higher, and a pre-calibration was required. Nevertheless, the FEM values proved to be closer to the tissue experimental results, yielding 5.2 μm systematic mean error, compared to 22.0 μm obtained with MoI. These results suggest that the medium volume or "saline height", the brain slice thickness and anisotropy, and the location of the reference electrode, which were included in the FEM model, considerably affect the extracellular signal and localization performance, when the signal source is at larger distance to the array. After pre-calibration, the relative random error of the z-localization in tissue was only 3% for z-distances up to 200 μm. We then applied the model and related detailed understanding of extracellular recordings to achieve an electrically-guided navigation of a stimulating micropipette, solely based on the measured HD-MEA signals, and managed to target spontaneously active neurons in an acute brain slice for electroporation.
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Affiliation(s)
- Marie Engelene J Obien
- Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
- RIKEN Quantitative Biology Center, Kobe, Japan.
- MaxWell Biosystems AG, Basel, Switzerland.
| | - Andreas Hierlemann
- Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland
| | - Urs Frey
- Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland
- RIKEN Quantitative Biology Center, Kobe, Japan
- MaxWell Biosystems AG, Basel, Switzerland
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Gupta I, Serb A, Khiat A, Zeitler R, Vassanelli S, Prodromakis T. Sub 100 nW Volatile Nano-Metal-Oxide Memristor as Synaptic-Like Encoder of Neuronal Spikes. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2018; 12:351-359. [PMID: 29570062 DOI: 10.1109/tbcas.2018.2797939] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Advanced neural interfaces mediate a bioelectronic link between the nervous system and microelectronic devices, bearing great potential as innovative therapy for various diseases. Spikes from a large number of neurons are recorded leading to creation of big data that require online processing under most stringent conditions, such as minimal power dissipation and on-chip space occupancy. Here, we present a new concept where the inherent volatile properties of a nano-scale memristive device are used to detect and compress information on neural spikes as recorded by a multielectrode array. Simultaneously, and similarly to a biological synapse, information on spike amplitude and frequency is transduced in metastable resistive state transitions of the device, which is inherently capable of self-resetting and of continuous encoding of spiking activity. Furthermore, operating the memristor in a very high resistive state range reduces its average in-operando power dissipation to less than 100 nW, demonstrating the potential to build highly scalable, yet energy-efficient on-node processors for advanced neural interfaces.
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Yger P, Spampinato GLB, Esposito E, Lefebvre B, Deny S, Gardella C, Stimberg M, Jetter F, Zeck G, Picaud S, Duebel J, Marre O. A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo. eLife 2018; 7:e34518. [PMID: 29557782 PMCID: PMC5897014 DOI: 10.7554/elife.34518] [Citation(s) in RCA: 155] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 03/19/2018] [Indexed: 01/03/2023] Open
Abstract
In recent years, multielectrode arrays and large silicon probes have been developed to record simultaneously between hundreds and thousands of electrodes packed with a high density. However, they require novel methods to extract the spiking activity of large ensembles of neurons. Here, we developed a new toolbox to sort spikes from these large-scale extracellular data. To validate our method, we performed simultaneous extracellular and loose patch recordings in rodents to obtain 'ground truth' data, where the solution to this sorting problem is known for one cell. The performance of our algorithm was always close to the best expected performance, over a broad range of signal-to-noise ratios, in vitro and in vivo. The algorithm is entirely parallelized and has been successfully tested on recordings with up to 4225 electrodes. Our toolbox thus offers a generic solution to sort accurately spikes for up to thousands of electrodes.
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Affiliation(s)
- Pierre Yger
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | | | - Elric Esposito
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | | | - Stéphane Deny
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | - Christophe Gardella
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
- Laboratoire de Physique Statistique, CNRS, ENS, UPMC, 75005ParisFrance
| | - Marcel Stimberg
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | | | | | - Serge Picaud
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | - Jens Duebel
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | - Olivier Marre
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
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Esler TB, Kerr RR, Tahayori B, Grayden DB, Meffin H, Burkitt AN. Minimizing activation of overlying axons with epiretinal stimulation: The role of fiber orientation and electrode configuration. PLoS One 2018; 13:e0193598. [PMID: 29494655 PMCID: PMC5833203 DOI: 10.1371/journal.pone.0193598] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Accepted: 02/14/2018] [Indexed: 12/19/2022] Open
Abstract
Currently, a challenge in electrical stimulation of the retina with a visual prosthesis (bionic eye) is to excite only the cells lying directly under the electrode in the ganglion cell layer, while avoiding excitation of axon bundles that pass over the surface of the retina in the nerve fiber layer. Stimulation of overlying axons results in irregular visual percepts, limiting perceptual efficacy. This research explores how differences in fiber orientation between the nerve fiber layer and ganglion cell layer leads to differences in the electrical activation of the axon initial segment and axons of passage. Approach. Axons of passage of retinal ganglion cells in the nerve fiber layer are characterized by a narrow distribution of fiber orientations, causing highly anisotropic spread of applied current. In contrast, proximal axons in the ganglion cell layer have a wider distribution of orientations. A four-layer computational model of epiretinal extracellular stimulation that captures the effect of neurite orientation in anisotropic tissue has been developed using a volume conductor model known as the cellular composite model. Simulations are conducted to investigate the interaction of neural tissue orientation, stimulating electrode configuration, and stimulation pulse duration and amplitude. Main results. Our model shows that simultaneous stimulation with multiple electrodes aligned with the nerve fiber layer can be used to achieve selective activation of axon initial segments rather than passing fibers. This result can be achieved while reducing required stimulus charge density and with only modest increases in the spread of activation in the ganglion cell layer, and is shown to extend to the general case of arbitrary electrode array positioning and arbitrary target volume. Significance. These results elucidate a strategy for more targeted stimulation of retinal ganglion cells with experimentally-relevant multi-electrode geometries and achievable stimulation requirements.
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Affiliation(s)
- Timothy B. Esler
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, Australia
- * E-mail:
| | - Robert R. Kerr
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, Australia
- Seer Medical, Melbourne, Victoria, Australia
| | - Bahman Tahayori
- Monash Institute of Medical Engineering, Monash University, Clayton, Victoria, Australia
| | - David B. Grayden
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, Australia
- Centre for Neural Engineering, The University of Melbourne, Parkville, Victoria, Australia
| | - Hamish Meffin
- National Vision Research Institute, Australian College of Optometry, Carlton, Victoria, Australia
- ARC Centre of Excellence for Integrative Brain Function, Optometry & Vision Science, The University of Melbourne, Parkville, Victoria, Australia
| | - Anthony N. Burkitt
- Department of Biomedical Engineering, The University of Melbourne, Parkville, Victoria, Australia
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Abstract
Microelectrode array (MEA) recordings of the ex vivo flat-mounted retina enable the functional analysis of the retinal output. The electrical activity of a large portion of retinal ganglion cells (RGCs) is recorded simultaneously in response to various light stimuli. Analysis of the recorded time series of action potentials reveals physiological parameters such as firing rate, time latency, receptive field size, axonal conduction velocity. These parameters change during retinal diseases.
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Affiliation(s)
- Günther Zeck
- Neurophysics, NMI at the University Tübingen, Markwiesenstrs. 55, Reutlingen, 72770, Germany.
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Hurst J, Vitkute M, Hofmann K, Müller S, Löscher M, Bartz-Schmidt KU, Spitzer MS, Schnichels S, Januschowski K. Comparison of Different Cell Culture Media in the Model of the Isolated and Superfused Bovine Retina: Investigating the Limits of More Physiological Perfusion Solutions. Curr Eye Res 2017; 43:232-243. [PMID: 29111831 DOI: 10.1080/02713683.2017.1387668] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
PURPOSE The isolated superfused retina is a standardized tool in ophthalmological research. However, stable electroretinogram (ERG) responses can only be obtained for around eight hours; therefore, limiting its use. The aim of this study was to evaluate the short-term potential of different cell culture media and to promote long-term testing based on the results obtained. MATERIALS AND METHODS For the experimental procedure bovine retinae were prepared and perfused with the standard Sickel solution and an ERG was performed. After recording stable a- or b-waves, different media (Dulbecco's Modified Eagle's Medium (DMEM), MACS, and Neurobasal) were superfused for 45 minutes. ERG recovery was monitored overall for 75 minutes. Analysis of the mRNA expression of Thy-1, GFAP, Bax/Bcl-2-ratio, Rhodopsin, and Opsin via qRT-PCR was performed directly after ERG recording on the same retina. RESULTS None of the tested media had a negative effect on a-wave amplitudes, although b-wave amplitudes decreased (DMEM) or increased (MACS and Neurobasal) compared to the standard solution (Sickel) after 45 minutes of exposure. However, after 75 minutes of wash-out, no difference to the standard solution alone could be observed. Exposure to different media either had no effect or decreased the Opsin and Rhodopsin mRNA levels. Thy-1 expression was strongly diminished in DMEM and MACS (by 2-3-fold), whereas incubation in Neurobasal medium led to a slight increase compared to incubation with the standard solution. Furthermore, the Bax/Bcl-2 ratio indicated an anti-apoptotic effect (Bax/Bcl-2 = 0.16; p < 0.05) for Neurobasal. CONCLUSION Neurobasal medium displayed the best electrophysiological properties in the short-term and may be applicable for stable long-term escalation testing.
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Affiliation(s)
- José Hurst
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany
| | - Milda Vitkute
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany
| | - Kathleen Hofmann
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany
| | - Sebastian Müller
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany
| | - Marina Löscher
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany
| | | | - Martin S Spitzer
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany.,b Department of Ophthalmology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Sven Schnichels
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany
| | - Kai Januschowski
- a Centre for Ophthalmology, University Eye Hospital Tübingen , Tübingen , Germany.,c Eye Hospital , Sulzbach , Saar , Germany
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14
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Zeck G, Jetter F, Channappa L, Bertotti G, Thewes R. Electrical Imaging: Investigating Cellular Function at High Resolution. ACTA ACUST UNITED AC 2017; 1:e1700107. [DOI: 10.1002/adbi.201700107] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2017] [Revised: 07/27/2017] [Indexed: 12/26/2022]
Affiliation(s)
- Günther Zeck
- Neurophysics, Natural and Medical Sciences Institute at the University Tübingen; 72770 Reutlingen Germany
| | - Florian Jetter
- Neurophysics, Natural and Medical Sciences Institute at the University Tübingen; 72770 Reutlingen Germany
| | - Lakshmi Channappa
- Neurophysics, Natural and Medical Sciences Institute at the University Tübingen; 72770 Reutlingen Germany
| | - Gabriel Bertotti
- Chair of Sensor and Actuator Systems; Technical University of Berlin; 10587 Berlin Germany
| | - Roland Thewes
- Chair of Sensor and Actuator Systems; Technical University of Berlin; 10587 Berlin Germany
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15
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Hierlemann A. Direct Interfacing of Neurons to Highly Integrated Microsystems. PROCEEDINGS. IEEE INTERNATIONAL CONFERENCE ON MICRO ELECTRO MECHANICAL SYSTEMS 2017; 2017:199-204. [PMID: 28677939 PMCID: PMC5448667 DOI: 10.1109/memsys.2017.7863375] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The use of large high-density transducer arrays enables fundamentally new neuroscientific insights through enabling high-throughput monitoring of action potentials of larger neuronal networks (> 1000 neurons) over extended time to see effects of disturbances or developmental effects, and through facilitating detailed investigations of neuronal signaling characteristics at subcellular level, for example, the study of axonal signal propagation that has been largely inaccessible to established methods. Applications include research in neural diseases and pharmacology.
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Affiliation(s)
- Andreas Hierlemann
- ETH Zurich, Department of Biosystems Science and Engineering, CH-4058, Basel, Switzerland
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16
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Obien MEJ, Gong W, Frey U, Bakkum DJ. CMOS-Based High-Density Microelectrode Arrays: Technology and Applications. SERIES IN BIOENGINEERING 2017. [DOI: 10.1007/978-981-10-3957-7_1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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17
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Gupta I, Serb A, Khiat A, Zeitler R, Vassanelli S, Prodromakis T. Real-time encoding and compression of neuronal spikes by metal-oxide memristors. Nat Commun 2016; 7:12805. [PMID: 27666698 PMCID: PMC5052668 DOI: 10.1038/ncomms12805] [Citation(s) in RCA: 113] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Accepted: 08/03/2016] [Indexed: 11/09/2022] Open
Abstract
Advanced brain-chip interfaces with numerous recording sites bear great potential for investigation of neuroprosthetic applications. The bottleneck towards achieving an efficient bio-electronic link is the real-time processing of neuronal signals, which imposes excessive requirements on bandwidth, energy and computation capacity. Here we present a unique concept where the intrinsic properties of memristive devices are exploited to compress information on neural spikes in real-time. We demonstrate that the inherent voltage thresholds of metal-oxide memristors can be used for discriminating recorded spiking events from background activity and without resorting to computationally heavy off-line processing. We prove that information on spike amplitude and frequency can be transduced and stored in single devices as non-volatile resistive state transitions. Finally, we show that a memristive device array allows for efficient data compression of signals recorded by a multi-electrode array, demonstrating the technology's potential for building scalable, yet energy-efficient on-node processors for brain-chip interfaces. The need for intelligent compression of big data, for example in neuroscience, has sparked interest in neuromorphic data processing. Here, Gupta et al. use memristors as event integrators to encode and compress neuronal spiking activity recorded by multi-electrode arrays.
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Affiliation(s)
- Isha Gupta
- Department of Electronics and Computer Science, Faculty of Physical Science and Engineering, University of Southampton, University Road, SO17 1BJ Southampton, United Kingdom
| | - Alexantrou Serb
- Department of Electronics and Computer Science, Faculty of Physical Science and Engineering, University of Southampton, University Road, SO17 1BJ Southampton, United Kingdom
| | - Ali Khiat
- Department of Electronics and Computer Science, Faculty of Physical Science and Engineering, University of Southampton, University Road, SO17 1BJ Southampton, United Kingdom
| | - Ralf Zeitler
- Max Planck Institute for Intelligent Systems, Heisenbergstr, 3, 70569 Stuttgart, Germany
| | - Stefano Vassanelli
- Department of Biomedical Sciences, University of Padova, Via Francesco Marzolo 3, Padova 35131, Italy
| | - Themistoklis Prodromakis
- Department of Electronics and Computer Science, Faculty of Physical Science and Engineering, University of Southampton, University Road, SO17 1BJ Southampton, United Kingdom
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18
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Unsupervised neural spike sorting for high-density microelectrode arrays with convolutive independent component analysis. J Neurosci Methods 2016; 271:1-13. [DOI: 10.1016/j.jneumeth.2016.06.006] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2015] [Revised: 06/08/2016] [Accepted: 06/08/2016] [Indexed: 11/18/2022]
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19
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Fromherz P. Current-Induced Transistor Sensorics with Electrogenic Cells. BIOSENSORS-BASEL 2016; 6:18. [PMID: 27120627 PMCID: PMC4931478 DOI: 10.3390/bios6020018] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Revised: 03/31/2016] [Accepted: 04/12/2016] [Indexed: 11/22/2022]
Abstract
The concepts of transistor recording of electroactive cells are considered, when the response is determined by a current-induced voltage in the electrolyte due to cellular activity. The relationship to traditional transistor recording, with an interface-induced response due to interactions with the open gate oxide, is addressed. For the geometry of a cell-substrate junction, the theory of a planar core-coat conductor is described with a one-compartment approximation. The fast electrical relaxation of the junction and the slow change of ion concentrations are pointed out. On that basis, various recording situations are considered and documented by experiments. For voltage-gated ion channels under voltage clamp, the effects of a changing extracellular ion concentration and the enhancement/depletion of ion conductances in the adherent membrane are addressed. Inhomogeneous ion conductances are crucial for transistor recording of neuronal action potentials. For a propagating action potential, the effects of an axon-substrate junction and the surrounding volume conductor are distinguished. Finally, a receptor-transistor-sensor is described, where the inhomogeneity of a ligand–activated ion conductance is achieved by diffusion of the agonist and inactivation of the conductance. Problems with regard to a development of reliable biosensors are mentioned.
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Affiliation(s)
- Peter Fromherz
- Max-Planck-Institute for Biochemistry, Am Klopferspitz 18, Martinsried-München 82152, Germany.
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20
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Lewandowska MK, Radivojević M, Jäckel D, Müller J, Hierlemann AR. Cortical Axons, Isolated in Channels, Display Activity-Dependent Signal Modulation as a Result of Targeted Stimulation. Front Neurosci 2016; 10:83. [PMID: 27013945 PMCID: PMC4779934 DOI: 10.3389/fnins.2016.00083] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Accepted: 02/19/2016] [Indexed: 12/01/2022] Open
Abstract
Mammalian cortical axons are extremely thin processes that are difficult to study as a result of their small diameter: they are too narrow to patch while intact, and super-resolution microscopy is needed to resolve single axons. We present a method for studying axonal physiology by pairing a high-density microelectrode array with a microfluidic axonal isolation device, and use it to study activity-dependent modulation of axonal signal propagation evoked by stimulation near the soma. Up to three axonal branches from a single neuron, isolated in different channels, were recorded from simultaneously using 10-20 electrodes per channel. The axonal channels amplified spikes such that propagations of individual signals along tens of electrodes could easily be discerned with high signal to noise. Stimulation from 10 up to 160 Hz demonstrated similar qualitative results from all of the cells studied: extracellular action potential characteristics changed drastically in response to stimulation. Spike height decreased, spike width increased, and latency increased, as a result of reduced propagation velocity, as the number of stimulations and the stimulation frequencies increased. Quantitatively, the strength of these changes manifested itself differently in cells at different frequencies of stimulation. Some cells' signal fidelity fell to 80% already at 10 Hz, while others maintained 80% signal fidelity at 80 Hz. Differences in modulation by axonal branches of the same cell were also seen for different stimulation frequencies, starting at 10 Hz. Potassium ion concentration changes altered the behavior of the cells causing propagation failures at lower concentrations and improving signal fidelity at higher concentrations.
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Affiliation(s)
- Marta K Lewandowska
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich Basel, Switzerland
| | - Miloš Radivojević
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich Basel, Switzerland
| | - David Jäckel
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich Basel, Switzerland
| | - Jan Müller
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich Basel, Switzerland
| | - Andreas R Hierlemann
- Bio Engineering Laboratory, Department of Biosystems Science and Engineering, ETH Zürich Basel, Switzerland
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21
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Zeck G. Aberrant Activity in Degenerated Retinas Revealed by Electrical Imaging. Front Cell Neurosci 2016; 10:25. [PMID: 26903810 PMCID: PMC4758270 DOI: 10.3389/fncel.2016.00025] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2015] [Accepted: 01/25/2016] [Indexed: 02/05/2023] Open
Abstract
In this review, I present and discuss the current understanding of aberrant electrical activity found in the ganglion cell layer (GCL) of rod-degenerated (rd) mouse retinas. The reported electrophysiological properties revealed by electrical imaging using high-density microelectrode arrays can be subdivided between spiking activity originating from retinal ganglion cells (RGCs) and local field potentials (LFPs) reflecting strong trans-membrane currents within the GCL. RGCs in rd retinas show increased and rhythmic spiking compared to age-matched wild-type retinas. Fundamental spiking frequencies range from 5 to 15 Hz in various mouse models. The rhythmic RGC spiking is driven by a presynaptic network comprising AII amacrine and bipolar cells. In the healthy retina this rhythm-generating circuit is inhibited by photoreceptor input. A unique physiological feature of rd retinas is rhythmic LFP manifested as spatially-restricted low-frequency (5-15 Hz) voltage changes. Their spatiotemporal characterization revealed propagation and correlation with RGC spiking. LFPs rely on gap-junctional coupling and are shaped by glycinergic and by GABAergic transmission. The aberrant RGC spiking and LFPs provide a simple readout of the functionality of the remaining retinal circuitry which can be used in the development of improved vision restoration strategies.
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Affiliation(s)
- Günther Zeck
- Neurochip Research Group, Natural and Medical Sciences Institute at the University of Tübingen Reutlingen, Germany
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22
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Ness TV, Chintaluri C, Potworowski J, Łęski S, Głąbska H, Wójcik DK, Einevoll GT. Modelling and Analysis of Electrical Potentials Recorded in Microelectrode Arrays (MEAs). Neuroinformatics 2015; 13:403-26. [PMID: 25822810 PMCID: PMC4626530 DOI: 10.1007/s12021-015-9265-6] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Microelectrode arrays (MEAs), substrate-integrated planar arrays of up to thousands of closely spaced metal electrode contacts, have long been used to record neuronal activity in in vitro brain slices with high spatial and temporal resolution. However, the analysis of the MEA potentials has generally been mainly qualitative. Here we use a biophysical forward-modelling formalism based on the finite element method (FEM) to establish quantitatively accurate links between neural activity in the slice and potentials recorded in the MEA set-up. Then we develop a simpler approach based on the method of images (MoI) from electrostatics, which allows for computation of MEA potentials by simple formulas similar to what is used for homogeneous volume conductors. As we find MoI to give accurate results in most situations of practical interest, including anisotropic slices covered with highly conductive saline and MEA-electrode contacts of sizable physical extensions, a Python software package (ViMEAPy) has been developed to facilitate forward-modelling of MEA potentials generated by biophysically detailed multicompartmental neurons. We apply our scheme to investigate the influence of the MEA set-up on single-neuron spikes as well as on potentials generated by a cortical network comprising more than 3000 model neurons. The generated MEA potentials are substantially affected by both the saline bath covering the brain slice and a (putative) inadvertent saline layer at the interface between the MEA chip and the brain slice. We further explore methods for estimation of current-source density (CSD) from MEA potentials, and find the results to be much less sensitive to the experimental set-up.
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Affiliation(s)
- Torbjørn V Ness
- Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway
| | - Chaitanya Chintaluri
- Department of Neurophysiology, Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland
| | - Jan Potworowski
- Department of Neurophysiology, Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland
| | - Szymon Łęski
- Department of Neurophysiology, Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland
| | - Helena Głąbska
- Department of Neurophysiology, Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland
| | - Daniel K Wójcik
- Department of Neurophysiology, Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland
| | - Gaute T Einevoll
- Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway.
- Department of Physics, University of Oslo, Oslo, Norway.
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23
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Müller J, Ballini M, Livi P, Chen Y, Radivojevic M, Shadmani A, Viswam V, Jones IL, Fiscella M, Diggelmann R, Stettler A, Frey U, Bakkum DJ, Hierlemann A. High-resolution CMOS MEA platform to study neurons at subcellular, cellular, and network levels. LAB ON A CHIP 2015; 15:2767-80. [PMID: 25973786 PMCID: PMC5421573 DOI: 10.1039/c5lc00133a] [Citation(s) in RCA: 151] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Studies on information processing and learning properties of neuronal networks would benefit from simultaneous and parallel access to the activity of a large fraction of all neurons in such networks. Here, we present a CMOS-based device, capable of simultaneously recording the electrical activity of over a thousand cells in in vitro neuronal networks. The device provides sufficiently high spatiotemporal resolution to enable, at the same time, access to neuronal preparations on subcellular, cellular, and network level. The key feature is a rapidly reconfigurable array of 26 400 microelectrodes arranged at low pitch (17.5 μm) within a large overall sensing area (3.85 × 2.10 mm(2)). An arbitrary subset of the electrodes can be simultaneously connected to 1024 low-noise readout channels as well as 32 stimulation units. Each electrode or electrode subset can be used to electrically stimulate or record the signals of virtually any neuron on the array. We demonstrate the applicability and potential of this device for various different experimental paradigms: large-scale recordings from whole networks of neurons as well as investigations of axonal properties of individual neurons.
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Affiliation(s)
- Jan Müller
- ETH Zurich, Bio Engineering Laboratory, Department of Biosystems Science and Engineering, Mattenstrasse 26, CH-4058 Basel, Switzerland.
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24
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Obien MEJ, Deligkaris K, Bullmann T, Bakkum DJ, Frey U. Revealing neuronal function through microelectrode array recordings. Front Neurosci 2015; 8:423. [PMID: 25610364 PMCID: PMC4285113 DOI: 10.3389/fnins.2014.00423] [Citation(s) in RCA: 305] [Impact Index Per Article: 33.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 12/03/2014] [Indexed: 12/26/2022] Open
Abstract
Microelectrode arrays and microprobes have been widely utilized to measure neuronal activity, both in vitro and in vivo. The key advantage is the capability to record and stimulate neurons at multiple sites simultaneously. However, unlike the single-cell or single-channel resolution of intracellular recording, microelectrodes detect signals from all possible sources around every sensor. Here, we review the current understanding of microelectrode signals and the techniques for analyzing them. We introduce the ongoing advancements in microelectrode technology, with focus on achieving higher resolution and quality of recordings by means of monolithic integration with on-chip circuitry. We show how recent advanced microelectrode array measurement methods facilitate the understanding of single neurons as well as network function.
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Affiliation(s)
| | - Kosmas Deligkaris
- RIKEN Quantitative Biology Center, RIKEN Kobe, Japan ; Graduate School of Frontier Biosciences, Osaka University Osaka, Japan
| | | | - Douglas J Bakkum
- Department of Biosystems Science and Engineering, ETH Zurich Basel, Switzerland
| | - Urs Frey
- RIKEN Quantitative Biology Center, RIKEN Kobe, Japan ; Graduate School of Frontier Biosciences, Osaka University Osaka, Japan ; Department of Biosystems Science and Engineering, ETH Zurich Basel, Switzerland
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25
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Inayat S, Rountree CM, Troy JB, Saggere L. Chemical stimulation of rat retinal neurons: feasibility of an epiretinal neurotransmitter-based prosthesis. J Neural Eng 2014; 12:016010. [PMID: 25504758 DOI: 10.1088/1741-2560/12/1/016010] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
OBJECTIVE No cure currently exists for photoreceptor degenerative diseases, which cause partial or total blindness in millions of people worldwide. Electrical retinal prostheses have been developed by several groups with the goal of restoring vision lost to these diseases, but electrical stimulation has limitations. It excites both somas and axons, activating retinal pathways nonphysiologically, and limits spatial resolution because of current spread. Chemical stimulation of retinal ganglion cells (RGCs) using the neurotransmitter glutamate has been suggested as an alternative to electrical stimulation with some significant advantages. However, sufficient scientific data to support developing a chemical-based retinal prosthesis is lacking. The goal of this study was to investigate the feasibility of a neurotransmitter-based retinal prosthesis and determine therapeutic stimulation parameters. APPROACH We injected controlled amounts of glutamate into rat retinas from the epiretinal side ex vivo via micropipettes using a pressure injection system and recorded RGC responses with a multielectrode array. Responsive units were identified using a spike rate threshold of 3 Hz. MAIN RESULTS We recorded both somal and axonal units and demonstrated successful glutamatergic stimulation across different RGC subtypes. Analyses show that exogenous glutamate acts on RGC synapses similar to endogenous glutamate and, unlike electrical prostheses, stimulates only RGC somata. The spatial spread of glutamate stimulation was ≈ 290 μm from the injection site, comparable to current electrical prostheses. Further, the glutamate injections produced spatially differential responses in OFF, ON, and ON-OFF RGC subtypes, suggesting that differential stimulation of the OFF and ON systems may be possible. A temporal resolution of 3.2 Hz was obtained, which is a rate suitable for spatial vision. SIGNIFICANCE We provide strong support for the feasibility of an epiretinal neurotransmitter-based retinal prosthesis. Our findings suggest that chemical stimulation of RGCs is a viable alternative to electrical stimulation and could offer distinct advantages such as the selective stimulation of RGC somata.
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Affiliation(s)
- Samsoon Inayat
- Department of Mechanical and Industrial Engineering, University of Illinois at Chicago, Chicago, Illinois, USA. Department of Neurobiology, Northwestern University, Evanston, Illinois, USA
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26
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Menzler J, Channappa L, Zeck G. Rhythmic ganglion cell activity in bleached and blind adult mouse retinas. PLoS One 2014; 9:e106047. [PMID: 25153888 PMCID: PMC4143350 DOI: 10.1371/journal.pone.0106047] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2014] [Accepted: 07/31/2014] [Indexed: 12/02/2022] Open
Abstract
In retinitis pigmentosa – a degenerative disease which often leads to incurable blindness- the loss of photoreceptors deprives the retina from a continuous excitatory input, the so-called dark current. In rodent models of this disease this deprivation leads to oscillatory electrical activity in the remaining circuitry, which is reflected in the rhythmic spiking of retinal ganglion cells (RGCs). It remained unclear, however, if the rhythmic RGC activity is attributed to circuit alterations occurring during photoreceptor degeneration or if rhythmic activity is an intrinsic property of healthy retinal circuitry which is masked by the photoreceptor’s dark current. Here we tested these hypotheses by inducing and analysing oscillatory activity in adult healthy (C57/Bl6) and blind mouse retinas (rd10 and rd1). Rhythmic RGC activity in healthy retinas was detected upon partial photoreceptor bleaching using an extracellular high-density multi-transistor-array. The mean fundamental spiking frequency in bleached retinas was 4.3 Hz; close to the RGC rhythm detected in blind rd10 mouse retinas (6.5 Hz). Crosscorrelation analysis of neighbouring wild-type and rd10 RGCs (separation distance <200 µm) reveals synchrony among homologous RGC types and a constant phase shift (∼70 msec) among heterologous cell types (ON versus OFF). The rhythmic RGC spiking in these retinas is driven by a network of presynaptic neurons. The inhibition of glutamatergic ganglion cell input or the inhibition of gap junctional coupling abolished the rhythmic pattern. In rd10 and rd1 retinas the presynaptic network leads to local field potentials, whereas in bleached retinas additional pharmacological disinhibition is required to achieve detectable field potentials. Our results demonstrate that photoreceptor bleaching unmasks oscillatory activity in healthy retinas which shares many features with the functional phenotype detected in rd10 retinas. The quantitative physiological differences advance the understanding of the degeneration process and may guide future rescue strategies.
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Affiliation(s)
- Jacob Menzler
- Neurochip Research Group, Natural and Medical Sciences Institute at the University Tübingen, Reutlingen, Germany
- Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, Neuherberg, Germany
| | - Lakshmi Channappa
- Neurochip Research Group, Natural and Medical Sciences Institute at the University Tübingen, Reutlingen, Germany
| | - Guenther Zeck
- Neurochip Research Group, Natural and Medical Sciences Institute at the University Tübingen, Reutlingen, Germany
- * E-mail:
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27
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Kim R, Joo S, Jung H, Hong N, Nam Y. Recent trends in microelectrode array technology for in vitro neural interface platform. Biomed Eng Lett 2014. [DOI: 10.1007/s13534-014-0130-6] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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28
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Eickenscheidt M, Zeck G. Action potentials in retinal ganglion cells are initiated at the site of maximal curvature of the extracellular potential. J Neural Eng 2014; 11:036006. [DOI: 10.1088/1741-2560/11/3/036006] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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29
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Greene E. Shape recognition elicited by microsecond flashes is not based on photon quantity. Iperception 2014; 5:87-93. [PMID: 25469213 PMCID: PMC4249994 DOI: 10.1068/i0639rep] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2013] [Revised: 02/07/2014] [Indexed: 11/07/2022] Open
Abstract
It is generally thought that the perceptual impact of a brief flash of light is determined by the quantity of photons the flash delivers. This means that only the total quantity of photons is important below a critical duration of about 30-100 ms. Recent findings have challenged this concept and the present work provides additional evidence that it is not correct. The first experiment reported here delivered a given quantity of photons in under 200 μs, either as a single threshold-intensity flash or as multiple flashes at the same intensity. The single flash was ineffective at eliciting recognition, but multiple flashes became progressively more effective as the number of flashes was increased. A second experiment varied the number of 10 μs flashes. The effectiveness of multiple flashes was far higher than would be expected on the basis of the total quantity of photons being delivered. The results of both experiments suggest that the brief transitions of intensity provided by the flashes are far more important than the quantity of photons. A final experiment examined the combined impact from two threshold-intensity flashes as the interstimulus interval was increased. The pair members were able to combine their influence for at least 100 ms. These results call for more attention to how very brief light flashes generate signals that convey image content.
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Affiliation(s)
- Ernest Greene
- Laboratory for Neurometric Research, Department of Psychology, University of Southern California, Los Angeles, CA, 90089 USA; e-mail:
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30
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Stutzki H, Leibig C, Andreadaki A, Fischer D, Zeck G. Inflammatory stimulation preserves physiological properties of retinal ganglion cells after optic nerve injury. Front Cell Neurosci 2014; 8:38. [PMID: 24574973 PMCID: PMC3922046 DOI: 10.3389/fncel.2014.00038] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2013] [Accepted: 01/27/2014] [Indexed: 01/29/2023] Open
Abstract
Axonal injury in the optic nerve is associated with retinal ganglion cell (RGC) degeneration and irreversible loss of vision. However, inflammatory stimulation (IS) by intravitreal injection of Pam3Cys transforms RGCs into an active regenerative state enabling these neurons to survive injury and to regenerate axons into the injured optic nerve. Although morphological changes have been well studied, the functional correlates of RGCs transformed either into a de- or regenerating state at a sub-cellular level remain unclear. In the current study, we investigated the signal propagation in single intraretinal axons as well as characteristic activity features of RGCs in a naive, a degenerative or a regenerative state in ex vivo retinae 1 week after either optic nerve cut alone (ONC) or additional IS (ONC + IS). Recordings of single RGCs using high-density microelectrode arrays demonstrate that the mean intraretinal axonal conduction velocity significantly decreased within the first week after ONC. In contrast, when ONC was accompanied by regenerative Pam3Cys treatment the mean intraretinal velocity was undistinguishable from control RGCs, indicating a protective effect on the proximal axon. Spontaneous RGC activity decreased for the two most numerous RGC types (ON- and OFF-sustained cells) within one post-operative week, but did not significantly increase in RGCs after IS. The analysis of light-induced activity revealed that RGCs in ONC animals respond on average later and with fewer spikes than control RGCs. IS significantly improved the responsiveness of the two studied RGC types. These results show that the transformation into a regenerative state by IS preserves, at least transiently, the physiological functional properties of injured RGCs.
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Affiliation(s)
- Henrike Stutzki
- Neurochip Research Group, Natural and Medical Sciences Institute, University of Tübingen Reutlingen, Germany ; Graduate Training Centre of Neuroscience Tübingen, Germany
| | - Christian Leibig
- Neurochip Research Group, Natural and Medical Sciences Institute, University of Tübingen Reutlingen, Germany ; Graduate Training Centre of Neuroscience Tübingen, Germany
| | - Anastasia Andreadaki
- Department of Neurology, Experimental Neurology, Heinrich Heine University Düsseldorf Düsseldorf, Germany
| | - Dietmar Fischer
- Department of Neurology, Experimental Neurology, Heinrich Heine University Düsseldorf Düsseldorf, Germany
| | - Günther Zeck
- Neurochip Research Group, Natural and Medical Sciences Institute, University of Tübingen Reutlingen, Germany
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Bakkum DJ, Frey U, Radivojevic M, Russell TL, Müller J, Fiscella M, Takahashi H, Hierlemann A. Tracking axonal action potential propagation on a high-density microelectrode array across hundreds of sites. Nat Commun 2014; 4:2181. [PMID: 23867868 DOI: 10.1038/ncomms3181] [Citation(s) in RCA: 135] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2013] [Accepted: 06/24/2013] [Indexed: 12/22/2022] Open
Abstract
Axons are traditionally considered stable transmission cables, but evidence of the regulation of action potential propagation demonstrates that axons may have more important roles. However, their small diameters render intracellular recordings challenging, and low-magnitude extracellular signals are difficult to detect and assign. Better experimental access to axonal function would help to advance this field. Here we report methods to electrically visualize action potential propagation and network topology in cortical neurons grown over custom arrays, which contain 11,011 microelectrodes and are fabricated using complementary metal oxide semiconductor technology. Any neuron lying on the array can be recorded at high spatio-temporal resolution, and simultaneously precisely stimulated with little artifact. We find substantial velocity differences occurring locally within single axons, suggesting that the temporal control of a neuron's output may contribute to neuronal information processing.
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Affiliation(s)
- Douglas J Bakkum
- Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
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Maccione A, Hennig MH, Gandolfo M, Muthmann O, van Coppenhagen J, Eglen SJ, Berdondini L, Sernagor E. Following the ontogeny of retinal waves: pan-retinal recordings of population dynamics in the neonatal mouse. J Physiol 2013; 592:1545-63. [PMID: 24366261 PMCID: PMC3979611 DOI: 10.1113/jphysiol.2013.262840] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
The immature retina generates spontaneous waves of spiking activity that sweep across the ganglion cell layer during a limited period of development before the onset of visual experience. The spatiotemporal patterns encoded in the waves are believed to be instructive for the wiring of functional connections throughout the visual system. However, the ontogeny of retinal waves is still poorly documented as a result of the relatively low resolution of conventional recording techniques. Here, we characterize the spatiotemporal features of mouse retinal waves from birth until eye opening in unprecedented detail using a large-scale, dense, 4096-channel multielectrode array that allowed us to record from the entire neonatal retina at near cellular resolution. We found that early cholinergic waves propagate with random trajectories over large areas with low ganglion cell recruitment. They become slower, smaller and denser when GABAA signalling matures, as occurs beyond postnatal day (P) 7. Glutamatergic influences dominate from P10, coinciding with profound changes in activity dynamics. At this time, waves cease to be random and begin to show repetitive trajectories confined to a few localized hotspots. These hotspots gradually tile the retina with time, and disappear after eye opening. Our observations demonstrate that retinal waves undergo major spatiotemporal changes during ontogeny. Our results support the hypotheses that cholinergic waves guide the refinement of retinal targets and that glutamatergic waves may also support the wiring of retinal receptive fields.
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Affiliation(s)
- Alessandro Maccione
- Institute of Neuroscience, Newcastle University Medical School, Framlington Place, Newcastle upon Tyne NE2 4HH, UK.
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Abstract
OBJECTIVE High-rate pulse trains have proven to be effective in cochlear prosthetics and, more recently, have been shown to elicit a wide range of interesting response properties in axons of the peripheral nervous system. Surprisingly, the effectiveness of such trains for use in retinal prostheses has not been explored. APPROACH Using cell-attached patch clamp methods, we measured the in vitro response of two rabbit retinal ganglion cell types, OFF-brisk transient (OFF-BT) and ON-OFF directionally selective (DS), to trains of biphasic pulses delivered at 2000 pulses per second (PPS). MAIN RESULTS For OFF-BT cells, response onset occurred at ~20 µA, and maximum response occurred at ~40 µA. Interestingly, spiking levels decreased for further increases in amplitude. In contrast, DS cells had a spiking onset at ~25 µA and maintained strong spiking as stimulus amplitude was increased, even at the highest levels tested. Thus, a low-amplitude stimulus train at 2000 PPS (~25 µA) will activate OFF-BT cells strongly, while simultaneously activating DS cells only weakly. In contrast, a high amplitude train (~75 µA) will activate DS cells strongly while suppressing responses in OFF-BT cells. SIGNIFICANCE The response differences between cell types suggest some forms of preferential activation may be possible, and further testing is warranted. Further, the scope of the response differences found here suggests activation mechanisms that are more complex than those described in previous studies.
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Affiliation(s)
- Changsi Cai
- VA Boston Healthcare System, Boston, MA, USA
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Fiscella M, Farrow K, Jones IL, Jäckel D, Müller J, Frey U, Bakkum DJ, Hantz P, Roska B, Hierlemann A. Recording from defined populations of retinal ganglion cells using a high-density CMOS-integrated microelectrode array with real-time switchable electrode selection. J Neurosci Methods 2012; 211:103-13. [PMID: 22939921 DOI: 10.1016/j.jneumeth.2012.08.017] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2012] [Revised: 08/15/2012] [Accepted: 08/16/2012] [Indexed: 10/28/2022]
Abstract
In order to understand how retinal circuits encode visual scenes, the neural activity of defined populations of retinal ganglion cells (RGCs) has to be investigated. Here we report on a method for stimulating, detecting, and subsequently targeting defined populations of RGCs. The possibility to select a distinct population of RGCs for extracellular recording enables the design of experiments that can increase our understanding of how these neurons extract precise spatio-temporal features from the visual scene, and how the brain interprets retinal signals. We used light stimulation to elicit a response from physiologically distinct types of RGCs and then utilized the dynamic-configurability capabilities of a microelectronics-based high-density microelectrode array (MEA) to record their synchronous action potentials. The layout characteristics of the MEA made it possible to stimulate and record from multiple, highly overlapping RGCs simultaneously without light-induced artifacts. The high-density of electrodes and the high signal-to-noise ratio of the MEA circuitry allowed for recording of the activity of each RGC on 14±7 electrodes. The spatial features of the electrical activity of each RGC greatly facilitated spike sorting. We were thus able to localize, identify and record from defined RGCs within a region of mouse retina. In addition, we stimulated and recorded from genetically modified RGCs to demonstrate the applicability of optogenetic methods, which introduces an additional feature to target a defined cell type. The developed methodologies can likewise be applied to other neuronal preparations including brain slices or cultured neurons.
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Eickenscheidt M, Jenkner M, Thewes R, Fromherz P, Zeck G. Electrical stimulation of retinal neurons in epiretinal and subretinal configuration using a multicapacitor array. J Neurophysiol 2012; 107:2742-55. [PMID: 22357789 DOI: 10.1152/jn.00909.2011] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Electrical stimulation of retinal neurons offers the possibility of partial restoration of visual function. Challenges in neuroprosthetic applications are the long-term stability of the metal-based devices and the physiological activation of retinal circuitry. In this study, we demonstrate electrical stimulation of different classes of retinal neurons with a multicapacitor array. The array—insulated by an inert oxide—allows for safe stimulation with monophasic anodal or cathodal current pulses of low amplitude. Ex vivo rabbit retinas were interfaced in either epiretinal or subretinal configuration to the multicapacitor array. The evoked activity was recorded from ganglion cells that respond to light increments by an extracellular tungsten electrode. First, a monophasic epiretinal cathodal or a subretinal anodal current pulse evokes a complex burst of action potentials in ganglion cells. The first action potential occurs within 1 ms and is attributed to direct stimulation. Within the next milliseconds additional spikes are evoked through bipolar cell or photoreceptor depolarization, as confirmed by pharmacological blockers. Second, monophasic epiretinal anodal or subretinal cathodal currents elicit spikes in ganglion cells by hyperpolarization of photoreceptor terminals. These stimuli mimic the photoreceptor response to light increments. Third, the stimulation symmetry between current polarities (anodal/cathodal) and retina-array configuration (epi/sub) is confirmed in an experiment in which stimuli presented at different positions reveal the center-surround organization of the ganglion cell. A simple biophysical model that relies on voltage changes of cell terminals in the transretinal electric field above the stimulation capacitor explains our results. This study provides a comprehensive guide for efficient stimulation of different retinal neuronal classes with low-amplitude capacitive currents.
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Affiliation(s)
- Max Eickenscheidt
- Department of Membrane and Neurophysics, Max Planck Institute for Biochemistry, Martinsried; and
| | - Martin Jenkner
- Corporate Research, Infineon Technologies, Munich, Germany
| | - Roland Thewes
- Corporate Research, Infineon Technologies, Munich, Germany
| | - Peter Fromherz
- Department of Membrane and Neurophysics, Max Planck Institute for Biochemistry, Martinsried; and
| | - Günther Zeck
- Department of Membrane and Neurophysics, Max Planck Institute for Biochemistry, Martinsried; and
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