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Namli S, Soyer Y. Investigation of class 1 integrons and virulence genes in the emergent Salmonella serovar Infantis in Turkey. Int Microbiol 2021; 25:259-265. [PMID: 34559352 DOI: 10.1007/s10123-021-00212-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 09/06/2021] [Accepted: 09/16/2021] [Indexed: 11/25/2022]
Abstract
The emerging situation of Salmonella enterica subsp. enterica serovar Infantis (S. Infantis) in Turkey was investigated in terms of virulence genes and mobile genetic elements such as Salmonella genomic island 1 (SGI1) and class 1 (C1) integron to see whether increased multidrug resistance (MDR) and ability to cause human cases is a consequence of their possession. Screening of SGI1 (and its variants) and C1 integrons was done with conventional PCR, while screening of gene cassettes and virulence genes was conducted with real-time PCR for 70 S. Infantis isolates from poultry products. SGI1 or its variants were not detected in any of the isolates. Sixty-eight of 70 isolates were detected to carry one C1 integron of size 1.0 kb. These integrons were detected to carry ant(3″)-Ia gene cassette explaining the streptomycin/spectinomycin resistance. Sequence analysis of gene cassettes belongs to four representing isolates which showed that, although their difference in isolation date and place, genetically, they are 99.9% similar. Virulence gene screening was introduced as genotypic virulence profiles. The most dominant profile for S. Infantis isolates, among twelve genes, was gatC-tcfA, which are known to be related to colonization at specific hosts. This study revealed the high percentage of C1 integron possession in S. Infantis isolates from poultry products in Turkey. It also showed the potential of S. Infantis strains to be resistant to more antimicrobial drugs. Moreover, a dominant profile of virulence genes that are uncommon for non-typhoidal Salmonella (NTS) serovars was detected, which might explain the enhanced growth at specified hosts.
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Affiliation(s)
- Sahin Namli
- Department of Food Engineering, Faculty of Engineering, Orta Dogu Teknik Üniversitesi, Ankara, 06800, Turkey
| | - Yesim Soyer
- Department of Food Engineering, Faculty of Engineering, Orta Dogu Teknik Üniversitesi, Ankara, 06800, Turkey.
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Boivin T, Doublet V, Candau JN. The ecology of predispersal insect herbivory on tree reproductive structures in natural forest ecosystems. INSECT SCIENCE 2019; 26:182-198. [PMID: 29082661 DOI: 10.1111/1744-7917.12549] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Revised: 07/06/2017] [Accepted: 08/15/2017] [Indexed: 06/07/2023]
Abstract
Plant-insect interactions are key model systems to assess how some species affect the distribution, the abundance, and the evolution of others. Tree reproductive structures represent a critical resource for many insect species, which can be likely drivers of demography, spatial distribution, and trait diversification of plants. In this review, we present the ecological implications of predispersal herbivory on tree reproductive structures by insects (PIHR) in forest ecosystems. Both insect's and tree's perspectives are addressed with an emphasis on how spatiotemporal variation and unpredictability in seed availability can shape such particular plant-animal interactions. Reproductive structure insects show strong trophic specialization and guild diversification. Insects evolved host selection and spatiotemporal dispersal strategies in response to variable and unpredictable abundance of reproductive structures in both space and time. If PIHR patterns have been well documented in numerous systems, evidences of the subsequent demographic and evolutionary impacts on tree populations are still constrained by time-scale challenges of experimenting on such long-lived organisms, and modeling approaches of tree dynamics rarely consider PIHR when including biotic interactions in their processes. We suggest that spatially explicit and mechanistic approaches of the interactions between individual tree fecundity and insect dynamics will clarify predictions of the demogenetic implications of PIHR in tree populations. In a global change context, further experimental and theoretical contributions to the likelihood of life-cycle disruptions between plants and their specialized herbivores, and to how these changes may generate novel dynamic patterns in each partner of the interaction are increasingly critical.
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Affiliation(s)
| | | | - Jean-Noël Candau
- Natural Resources Canada, Canadian Forest Service, Great Lakes Forestry Centre, Sault Ste Marie, Ontario, Canada
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Lander TA, Klein EK, Oddou-Muratorio S, Candau JN, Gidoin C, Chalon A, Roig A, Fallour D, Auger-Rozenberg MA, Boivin T. Reconstruction of a windborne insect invasion using a particle dispersal model, historical wind data, and Bayesian analysis of genetic data. Ecol Evol 2014; 4:4609-25. [PMID: 25558356 PMCID: PMC4278814 DOI: 10.1002/ece3.1206] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Revised: 07/28/2014] [Accepted: 07/31/2014] [Indexed: 11/29/2022] Open
Abstract
Understanding how invasive species establish and spread is vital for developing effective management strategies for invaded areas and identifying new areas where the risk of invasion is highest. We investigated the explanatory power of dispersal histories reconstructed based on local-scale wind data and a regional-scale wind-dispersed particle trajectory model for the invasive seed chalcid wasp Megastigmus schimitscheki (Hymenoptera: Torymidae) in France. The explanatory power was tested by: (1) survival analysis of empirical data on M. schimitscheki presence, absence and year of arrival at 52 stands of the wasp's obligate hosts, Cedrus (true cedar trees); and (2) Approximate Bayesian analysis of M. schimitscheki genetic data using a coalescence model. The Bayesian demographic modeling and traditional population genetic analysis suggested that initial invasion across the range was the result of long-distance dispersal from the longest established sites. The survival analyses of the windborne expansion patterns derived from a particle dispersal model indicated that there was an informative correlation between the M. schimitscheki presence/absence data from the annual surveys and the scenarios based on regional-scale wind data. These three very different analyses produced highly congruent results supporting our proposal that wind is the most probable vector for passive long-distance dispersal of this invasive seed wasp. This result confirms that long-distance dispersal from introduction areas is a likely driver of secondary expansion of alien invasive species. Based on our results, management programs for this and other windborne invasive species may consider (1) focusing effort at the longest established sites and (2) monitoring outlying populations remains critically important due to their influence on rates of spread. We also suggest that there is a distinct need for new analysis methods that have the capacity to combine empirical spatiotemporal field data, genetic data, and environmental data to investigate dispersal and invasion.
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Affiliation(s)
- Tonya A Lander
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France
| | - Etienne K Klein
- INRA, UR546 Unité de Biostatistique et Processus Spatiaux F-84914, Avignon, France
| | | | - Jean-Noël Candau
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France ; National Resources Canada, Canadian Forest Service, Great Lakes Forestry Ctr Sault Ste Marie, Ontario, P6A 2E5, Canada
| | - Cindy Gidoin
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France
| | - Alain Chalon
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France
| | - Anne Roig
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France
| | - Delphine Fallour
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France
| | | | - Thomas Boivin
- INRA, UR629 Ecologie des Forêts Méditerranéennes F-84914, Avignon, France
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Gidoin C, Roques L, Boivin T. Linking niche theory to ecological impacts of successful invaders: insights from resource fluctuation-specialist herbivore interactions. J Anim Ecol 2014; 84:396-406. [DOI: 10.1111/1365-2656.12303] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Accepted: 09/25/2014] [Indexed: 11/27/2022]
Affiliation(s)
- Cindy Gidoin
- UR 629 Écologie des Forêts Méditerranéennes; INRA; F-84914 Avignon France
| | - Lionel Roques
- UR 546 Biostatistique et Processus Spatiaux; INRA; F-84914 Avignon France
| | - Thomas Boivin
- UR 629 Écologie des Forêts Méditerranéennes; INRA; F-84914 Avignon France
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