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For: Jiang B, Xie D, Liu W, Peng Q, He X. De novo assembly and characterization of the transcriptome, and development of SSR markers in wax gourd (Benicasa hispida). PLoS One 2013;8:e71054. [PMID: 23951078 PMCID: PMC3738631 DOI: 10.1371/journal.pone.0071054] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2013] [Accepted: 06/26/2013] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Yan J, Cheng J, Xie D, Wang Y, Wang M, Yang S, Jiang B, Chen L, Cai J, Liu W. A nonsynonymous mutation in BhLS, encoding an acyl-CoA N-acyltransferase leads to fruit and seed size variation in wax gourd (Benincasa hispida). TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024;137:100. [PMID: 38602584 DOI: 10.1007/s00122-024-04604-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 03/18/2024] [Indexed: 04/12/2024]
2
Borlay AJ, Mweu CM, Nyanjom SG, Omolo KM, Naitchede LHS. De novo transcriptomic analysis of Doum Palm (Hyphaene compressa) revealed an insight into its potential drought tolerance. PLoS One 2024;19:e0292543. [PMID: 38470884 DOI: 10.1371/journal.pone.0292543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 09/24/2023] [Indexed: 03/14/2024]  Open
3
Wang Q, Guo C, Yang S, Zhong Q, Tian J. Screening and Verification of Reference Genes for Analysis of Gene Expression in Garlic (Allium sativum L.) under Cold and Drought Stress. PLANTS (BASEL, SWITZERLAND) 2023;12:763. [PMID: 36840111 PMCID: PMC9963267 DOI: 10.3390/plants12040763] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Revised: 01/30/2023] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
4
Luo C, Yan J, He C, Liu W, Xie D, Jiang B. Genome-Wide Identification of the SAUR Gene Family in Wax Gourd (Benincasa hispida) and Functional Characterization of BhSAUR60 during Fruit Development. Int J Mol Sci 2022;23:ijms232214021. [PMID: 36430500 PMCID: PMC9694812 DOI: 10.3390/ijms232214021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 11/01/2022] [Accepted: 11/03/2022] [Indexed: 11/16/2022]  Open
5
Xu Y, Zhang H, Zhong Y, Jiang N, Zhong X, Zhang Q, Chai S, Li H, Zhang Z. Comparative genomics analysis of bHLH genes in cucurbits identifies a novel gene regulating cucurbitacin biosynthesis. HORTICULTURE RESEARCH 2022;9:uhac038. [PMID: 35184192 PMCID: PMC9071377 DOI: 10.1093/hr/uhac038] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 01/22/2022] [Accepted: 01/30/2022] [Indexed: 05/08/2023]
6
Ma L, Wang Q, Zheng Y, Guo J, Yuan S, Fu A, Bai C, Zhao X, Zheng S, Wen C, Guo S, Gao L, Grierson D, Zuo J, Xu Y. Cucurbitaceae genome evolution, gene function and molecular breeding. HORTICULTURE RESEARCH 2022;9:uhab057. [PMID: 35043161 PMCID: PMC8969062 DOI: 10.1093/hr/uhab057] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 10/28/2021] [Indexed: 05/07/2023]
7
Das RR, Pradhan S, Parida A. De-novo transcriptome analysis unveils differentially expressed genes regulating drought and salt stress response in Panicum sumatrense. Sci Rep 2020;10:21251. [PMID: 33277539 PMCID: PMC7718891 DOI: 10.1038/s41598-020-78118-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 11/03/2020] [Indexed: 12/15/2022]  Open
8
Abbas HMK, Huang HX, Wang AJ, Wu TQ, Xue SD, Ahmad A, Xie DS, Li JX, Zhong YJ. Metabolic and transcriptomic analysis of two Cucurbita moschata germplasms throughout fruit development. BMC Genomics 2020;21:365. [PMID: 32414328 PMCID: PMC7227267 DOI: 10.1186/s12864-020-6774-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 05/06/2020] [Indexed: 01/11/2023]  Open
9
Zhao X, Wang M, Chai J, Li Q, Zhou Y, Li Y, Cai X. De novo assembly and characterization of the transcriptome and development of microsatellite markers in a Chinese endemic Euphorbia kansui. BIOTECHNOL BIOTEC EQ 2020. [DOI: 10.1080/13102818.2020.1788992] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]  Open
10
Xie D, Xu Y, Wang J, Liu W, Zhou Q, Luo S, Huang W, He X, Li Q, Peng Q, Yang X, Yuan J, Yu J, Wang X, Lucas WJ, Huang S, Jiang B, Zhang Z. The wax gourd genomes offer insights into the genetic diversity and ancestral cucurbit karyotype. Nat Commun 2019;10:5158. [PMID: 31727887 PMCID: PMC6856369 DOI: 10.1038/s41467-019-13185-3] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 10/25/2019] [Indexed: 12/12/2022]  Open
11
Comparative transcriptome and metabolite profiling of four tissues from Alisma orientale (Sam.) Juzep reveals its inflorescence developmental and medicinal characteristics. Sci Rep 2019;9:12310. [PMID: 31444376 PMCID: PMC6707231 DOI: 10.1038/s41598-019-48806-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 08/13/2019] [Indexed: 12/11/2022]  Open
12
Transcriptome analysis and codominant markers development in caper, a drought tolerant orphan crop with medicinal value. Sci Rep 2019;9:10411. [PMID: 31320697 PMCID: PMC6639398 DOI: 10.1038/s41598-019-46613-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 06/27/2019] [Indexed: 01/08/2023]  Open
13
Liu B, Liu Y, Wang L, Hou C, An M. RNA-seq-based analysis of the hypertrophic scarring with and without pressure therapy in a Bama minipig model. Sci Rep 2018;8:11831. [PMID: 30087370 PMCID: PMC6081447 DOI: 10.1038/s41598-018-29840-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Accepted: 07/19/2018] [Indexed: 11/09/2022]  Open
14
Guo WL, Chen BH, Chen XJ, Guo YY, Yang HL, Li XZ, Wang GY. Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew. PLoS One 2018;13:e0190175. [PMID: 29320569 PMCID: PMC5761878 DOI: 10.1371/journal.pone.0190175] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2017] [Accepted: 12/08/2017] [Indexed: 01/08/2023]  Open
15
Ruangnam S, Wanchana S, Phoka N, Saeansuk C, Mahatheeranont S, de Hoop SJ, Toojinda T, Vanavichit A, Arikit S. A deletion of the gene encoding amino aldehyde dehydrogenase enhances the "pandan-like" aroma of winter melon (Benincasa hispida) and is a functional marker for the development of the aroma. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2017;130:2557-2565. [PMID: 28887587 DOI: 10.1007/s00122-017-2976-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2016] [Accepted: 08/30/2017] [Indexed: 05/16/2023]
16
De novo transcriptome sequencing and assembly from apomictic and sexual Eragrostis curvula genotypes. PLoS One 2017;12:e0185595. [PMID: 29091722 PMCID: PMC5665505 DOI: 10.1371/journal.pone.0185595] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Accepted: 09/15/2017] [Indexed: 11/19/2022]  Open
17
Zhang L, Yang X, Qi X, Guo C, Jing Z. Characterizing the transcriptome and microsatellite markers for almond (Amygdalus communis L.) using the Illumina sequencing platform. Hereditas 2017;155:14. [PMID: 29075165 PMCID: PMC5649074 DOI: 10.1186/s41065-017-0049-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Accepted: 10/09/2017] [Indexed: 11/10/2022]  Open
18
Han C, Li Q, Li X, Zhang Z, Huang J. De novo assembly, characterization and annotation for the transcriptome of Sphaeroma terebrans and microsatellite marker discovery. Genes Genomics 2017;40:167-176. [PMID: 29892920 DOI: 10.1007/s13258-017-0618-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 10/05/2017] [Indexed: 12/12/2022]
19
Comparative Transcriptome Analysis Reveals Adaptive Evolution of Notopterygium incisum and Notopterygium franchetii, Two High-Alpine Herbal Species Endemic to China. Molecules 2017;22:molecules22071158. [PMID: 28696392 PMCID: PMC6152189 DOI: 10.3390/molecules22071158] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Revised: 07/07/2017] [Accepted: 07/07/2017] [Indexed: 02/04/2023]  Open
20
Cloning and characterization of WRKY gene homologs in Chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How) and their expression in response to fusaric acid treatment. 3 Biotech 2017;7:86. [PMID: 28501986 DOI: 10.1007/s13205-017-0711-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Accepted: 03/30/2017] [Indexed: 10/19/2022]  Open
21
Liu XY, Li J, Liu MM, Yao Q, Chen JZ. Transcriptome Profiling to Understand the Effect of Citrus Rootstocks on the Growth of 'Shatangju' Mandarin. PLoS One 2017;12:e0169897. [PMID: 28081213 PMCID: PMC5231354 DOI: 10.1371/journal.pone.0169897] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2016] [Accepted: 12/24/2016] [Indexed: 01/01/2023]  Open
22
Song X, Liu G, Huang Z, Duan W, Tan H, Li Y, Hou X. Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage. BMC Genomics 2016;17:297. [PMID: 27103267 PMCID: PMC4840866 DOI: 10.1186/s12864-016-2625-2] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2015] [Accepted: 04/16/2016] [Indexed: 12/21/2022]  Open
23
Huang J, Gao Y, Jia H, Zhang Z. Characterization of the teosinte transcriptome reveals adaptive sequence divergence during maize domestication. Mol Ecol Resour 2016;16:1465-1477. [DOI: 10.1111/1755-0998.12526] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Revised: 02/26/2016] [Accepted: 02/26/2016] [Indexed: 11/30/2022]
24
Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing. Sci Rep 2016;6:20549. [PMID: 26853106 PMCID: PMC4744933 DOI: 10.1038/srep20549] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Accepted: 01/06/2016] [Indexed: 11/09/2022]  Open
25
Deng T, Pang C, Lu X, Zhu P, Duan A, Tan Z, Huang J, Li H, Chen M, Liang X. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. PLoS One 2016;11:e0147132. [PMID: 26766209 PMCID: PMC4713091 DOI: 10.1371/journal.pone.0147132] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Accepted: 12/29/2015] [Indexed: 01/11/2023]  Open
26
Jiang B, Liu W, Xie D, Peng Q, He X, Lin Y, Liang Z. High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing. BMC Genomics 2015;16:1035. [PMID: 26647294 PMCID: PMC4673774 DOI: 10.1186/s12864-015-2220-y] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 11/16/2015] [Indexed: 11/10/2022]  Open
27
De novo assembly and characterization of the leaf, bud, and fruit transcriptome from the vulnerable tree Juglans mandshurica for the development of 20 new microsatellite markers using Illumina sequencing. Mol Genet Genomics 2015;291:849-62. [DOI: 10.1007/s00438-015-1147-y] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Accepted: 11/13/2015] [Indexed: 01/08/2023]
28
Chen SF, Li MW, Jing HJ, Zhou RC, Yang GL, Wu W, Fan Q, Liao WB. De Novo Transcriptome Assembly in Firmiana danxiaensis, a Tree Species Endemic to the Danxia Landform. PLoS One 2015;10:e0139373. [PMID: 26427005 PMCID: PMC4591120 DOI: 10.1371/journal.pone.0139373] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Accepted: 09/11/2015] [Indexed: 11/19/2022]  Open
29
De novo transcriptome assembly, gene annotation, marker development, and miRNA potential target genes validation under abiotic stresses in Oenanthe javanica. Mol Genet Genomics 2014;290:671-83. [PMID: 25416420 DOI: 10.1007/s00438-014-0953-y] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2014] [Accepted: 11/10/2014] [Indexed: 10/24/2022]
30
Chen X, Zhang J, Liu Q, Guo W, Zhao T, Ma Q, Wang G. Transcriptome sequencing and identification of cold tolerance genes in hardy Corylus species (C. heterophylla Fisch) floral buds. PLoS One 2014;9:e108604. [PMID: 25268521 PMCID: PMC4182504 DOI: 10.1371/journal.pone.0108604] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2014] [Accepted: 09/01/2014] [Indexed: 11/22/2022]  Open
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