Disentangling how landscape spatial and temporal heterogeneity affects Savanna birds

EVI and NDVI as proxies for multifaceted avian diversity in urban areas

Most ecological studies use remote sensing to analyze broad-scale biodiversity patterns, focusing mainly on taxonomic diversity in natural landscapes. One of the most important effects of high levels of urbanization is species loss (i.e., biotic homogenization). Therefore, cost-effective and more efficient methods to monitor biological communities' distribution are essential. This study explores whether the Enhanced Vegetation Index (EVI) and the Normalized Difference Vegetation Index (NDVI) can predict multifaceted avian diversity, urban tolerance, and specialization in urban landscapes. We sampled bird communities among 15 European cities and extracted Landsat 30-meter resolution EVI and NDVI values of the pixels within a 50-m buffer of bird sample points using Google Earth Engine (32-day Landsat 8 Collection Tier 1). Mixed models were used to find the best associations of EVI and NDVI, predicting multiple avian diversity facets: Taxonomic diversity, functional diversity, phylogenetic diversity, specialization levels, and urban tolerance. A total of 113 bird species across 15 cities from 10 different European countries were detected. EVI mean was the best predictor for foraging substrate specialization. NDVI mean was the best predictor for most avian diversity facets: taxonomic diversity, functional richness and evenness, phylogenetic diversity, phylogenetic species variability, community evolutionary distinctiveness, urban tolerance, diet foraging behavior, and habitat richness specialists. Finally, EVI and NDVI standard deviation were not the best predictors for any avian diversity facets studied. Our findings expand previous knowledge about EVI and NDVI as surrogates of avian diversity at a continental scale. Considering the European Commission's proposal for a Nature Restoration Law calling for expanding green urban space areas by 2050, we propose NDVI as a proxy of multiple facets of avian diversity to efficiently monitor bird community responses to land use changes in the cities.

Exploring relationships between native vertebrate biodiversity and grazing land condition

Although commercial grazing can degrade natural habitats, sustainably grazed land may be effective for wildlife conservation. Thus, land condition frameworks that assess the landscape quality of grazed land may also be useful for assessment of habitat quality for wildlife. However, the relationship between the condition of grazed land and native biodiversity is mostly unknown, and this knowledge gap must be addressed to adequately balance commercial production and conservation. In the present case study we determined the relevance of a widely used grazing land condition scale to understanding native vertebrate species richness and abundance (birds, reptiles, amphibians, mammals and all these vertebrate classes grouped) in grazed rangelands in northern Australia (~24–13°S; annual rainfall ranging from >1200 to <400 mm), sampled over approximately 10 years from 17 unique sites, containing 381 1-ha study plots. We defined the land condition scale relative to climate and comprehensive assessment of habitat attributes, and then described the relationships between land condition, habitat and biodiversity. The land condition scale partially explained richness and abundance patterns only for mammals (especially rodents), which tended to be higher in better-condition pasture. For other vertebrate groups, the scale was a very poor descriptor of richness and abundance. The land condition scale was not useful to assess wildlife diversity primarily because ‘woody thickening’ (increases in woody vegetation on grazed land, including shrubs and trees) lowers the ‘grazing value’ of land while also generally promoting vertebrate diversity. In line with this, biodiversity decreased with increasing bare ground and erosion, together with, and in the absence of, vegetation cover (i.e. desertification), consistent with grazing land degradation. The present study supports observations that land clearing and reductions in woody vegetation on grazed rangelands are particularly detrimental to native vertebrates.

A Holistic Landscape Description Reveals That Landscape Configuration Changes More over Time than Composition: Implications for Landscape Ecology Studies

Background

Space-for-time substitution—that is, the assumption that spatial variations of a system can explain and predict the effect of temporal variations—is widely used in ecology. However, it is questionable whether it can validly be used to explain changes in biodiversity over time in response to land-cover changes.

Hypothesis

Here, we hypothesize that different temporal vs spatial trajectories of landscape composition and configuration may limit space-for-time substitution in landscape ecology. Land-cover conversion changes not just the surface areas given over to particular types of land cover, but also affects isolation, patch size and heterogeneity. This means that a small change in land cover over time may have only minor repercussions on landscape composition but potentially major consequences for landscape configuration.

Methods

Using land-cover maps of the Paris region for 1982 and 2003, we made a holistic description of the landscape disentangling landscape composition from configuration. After controlling for spatial variations, we analyzed and compared the amplitudes of changes in landscape composition and configuration over time.

Results

For comparable spatial variations, landscape configuration varied more than twice as much as composition over time. Temporal changes in composition and configuration were not always spatially matched.

Significance

The fact that landscape composition and configuration do not vary equally in space and time calls into question the use of space-for-time substitution in landscape ecology studies. The instability of landscapes over time appears to be attributable to configurational changes in the main. This may go some way to explaining why the landscape variables that account for changes over time in biodiversity are not the same ones that account for the spatial distribution of biodiversity.

Spatio-temporal variation of biotic factors underpins contemporary range dynamics of congeners

Species' ranges are complex often exhibiting multidirectional shifts over space and time. Despite the strong fingerprint of recent historical climate change on species' distributions, biotic factors such as loss of vegetative habitat and the presence of potential competitors constitute important yet often overlooked drivers of range dynamics. Furthermore, short-term changes in environmental conditions can influence the underlying processes of local extinction and local colonization that drive range shifts, yet are rarely considered at broad scales. We used dynamic state-space occupancy models to test multiple hypotheses of the relative importance of major drivers of range shifts of Golden-winged Warblers (Vermivora chrysoptera) and Blue-winged Warblers (V. cyanoptera) between 1983 and 2012 across North America: warming temperatures; habitat changes; and occurrence of congeneric species, used here as proxy for biotic interactions. Dynamic occupancies for both species were most influenced by spatial relative to temporal variation in temperature and habitat. However, temporal variation in temperature anomalies and biotic interactions remained important. The two biotic factors considered, habitat change and biotic interactions, had the largest relative effect on estimated extinction rates followed by abiotic temperature anomalies. For the Golden-winged Warbler, the predicted presence of the Blue-winged Warbler, a hypothesized competitor, most influenced extinction probabilities, contributing to evidence supporting its role in site-level species replacement. Given the overall importance of biotic factors on range-wide dynamic occupancies, their consideration alongside abiotic factors should not be overlooked. Our results suggest that warming compounds the negative effect of habitat loss emphasizing species' need for habitat to adapt to a changing climate. Notably, even closely related species exhibited individual responses to abiotic and biotic factors considered.

Evaluating the impact of abrupt changes in forest policy and management practices on landscape dynamics: analysis of a Landsat image time series in the Atlantic Northern Forest

Sustainable forest management is based on functional relationships between management actions, landscape conditions, and forest values. Changes in management practices make it fundamentally more difficult to study these relationships because the impacts of current practices are difficult to disentangle from the persistent influences of past practices. Within the Atlantic Northern Forest of Maine, U.S.A., forest policy and management practices changed abruptly in the early 1990s. During the 1970s-1980s, a severe insect outbreak stimulated salvage clearcutting of large contiguous tracts of spruce-fir forest. Following clearcut regulation in 1991, management practices shifted abruptly to near complete dependence on partial harvesting. Using a time series of Landsat satellite imagery (1973-2010) we assessed cumulative landscape change caused by these very different management regimes. We modeled predominant temporal patterns of harvesting and segmented a large study area into groups of landscape units with similar harvest histories. Time series of landscape composition and configuration metrics averaged within groups revealed differences in landscape dynamics caused by differences in management history. In some groups (24% of landscape units), salvage caused rapid loss and subdivision of intact mature forest. Persistent landscape change was created by large salvage clearcuts (often averaging > 100 ha) and conversion of spruce-fir to deciduous and mixed forest. In groups that were little affected by salvage (56% of landscape units), contemporary partial harvesting caused loss and subdivision of intact mature forest at even greater rates. Patch shape complexity and edge density reached high levels even where cumulative harvest area was relatively low. Contemporary practices introduced more numerous and much smaller patches of stand-replacing disturbance (typically averaging <15 ha) and a correspondingly large amount of edge. Management regimes impacted different areas to different degrees, producing different trajectories of landscape change that should be recognized when studying the impact of policy and management practices on forest ecology.

Ecological relationships of meso-scale distribution in 25 neotropical vertebrate species

Vertebrates are a vital ecological component of Amazon forest biodiversity. Although vertebrates are a functionally important part of various ecosystem services they continue to be threatened by anthropogenic impacts throughout the Amazon. Here we use a standardized, regularly spaced arrangement of camera traps within 25km2 to provide a baseline assessment of vertebrate species diversity in a sustainable use protected area in the eastern Brazilian Amazon. We examined seasonal differences in the per species encounter rates (number of photos per camera trap and number of cameras with photos). Generalized linear models (GLMs) were then used to examine the influence of five variables (altitude, canopy cover, basal area, distance to nearest river and distance to nearest large river) on the number of photos per species and on functional groups. GLMs were also used to examine the relationships between large predators [Jaguar (Panthera onca) and Puma (Puma concolor)] and their prey. A total of 649 independent photos of 25 species were obtained from 1,800 camera trap days (900 each during wet and dry seasons). Only ungulates and rodents showed significant seasonal differences in the number of photos per camera. The number of photos differed between seasons for only three species (Mazama americana, Dasyprocta leporina and Myoprocta acouchy) all of which were photographed more (3 to 10 fold increase) during the wet season. Mazama americana was the only species where a significant difference was found in occupancy, with more photos in more cameras during the wet season. For most groups and species variation in the number of photos per camera was only explained weakly by the GLMs (deviance explained ranging from 10.3 to 54.4%). Terrestrial birds (Crax alector, Psophia crepitans and Tinamus major) and rodents (Cuniculus paca, Dasyprocta leporina and M. acouchy) were the notable exceptions, with our GLMs significantly explaining variation in the distribution of all species (deviance explained ranging from 21.0 to 54.5%). The group and species GLMs showed some novel ecological information from this relatively pristine area. We found no association between large cats and their potential prey. We also found that rodent and bird species were more often recorded closer to streams. As hunters gain access via rivers this finding suggests that there is currently little anthropogenic impact on the species. Our findings provide a standardized baseline for comparison with other sites and with which planned management and extractive activities can be evaluated.

More famine than feast: pattern and variation in a potentially degenerating mammal fauna on Cape York Peninsula

Context Global mammal populations continue to be threatened by environmental change, and recent decadal monitoring in northern Australia suggests a collapse in mammal abundance in key locations. Cape York Peninsula has globally significant natural values but there is very little published about the status and distribution of mammals in this region. Aims Following an extensive field survey we investigated two key questions: (i) what is the composition, spatial variation and change from previous regional surveys in the mid to late 1900s in the native terrestrial and arboreal mammal fauna recorded; and (ii) which landscape and site factors best predict mammal richness and abundance. Methods We sampled 202 one-hectare sites across seven locations from 2009 to 2012 in woodlands, closed forestand dune scrub and tussock grasslands. We collected landscape and site-based environmental data for each location, representing fire, weather and vegetation factors. We used generalised linear mixed models to examine the relationship between mammals and these factors. Key results Mammals were generally scarce across the sites and were more abundant and species rich in wet coastal grasslands or closed forests then tropical savanna woodlands. Fire frequency data and the surrounding vegetation complexity were consistent landscape-scale predictors of mammals; ground cover and woody complexity were significant at the site scale. Conclusions Notwithstanding interpretational constraints related to the limited evidence base of historic sampling, the mammal fauna recorded in this study for Cape York Peninsula was similar in composition to the mammal fauna described from 1948–1980 and surveys in 1985, with some species seemingly declining (e.g. Melomys burtoni, Dasyurus hallucatus, Sminthopsis virginiae) and others stable (e.g. Rattus sordidus) or more common (e.g. Rattus tunneyi); however, across all sites abundance was low, and many sites had few or no mammals. Implications In the absence of consistent long-term systematic monitoring it is difficult to determine if this survey and historical surveys represent pre-European patterns for mammals. The absence or low abundance of mammals in most sites suggest that cotemporary patterns may not represent an intact mammal fauna. Due to the equivocal nature of these findings a critical next step is to establish robust monitoring and experimental work to reveal the response of mammals to management interventions.