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Whole Transcriptome-Based Study to Speculate upon the Silkworm Yellow Blood Inhibitor (I) Gene and Analyze the miRNA-Mediated Gene Regulatory Network. Processes (Basel) 2022. [DOI: 10.3390/pr10081556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
White cocoon is developed and used as a natural fiber, and different silkworm strains have different cocoon colors. Natural-colored cocoons are preferred by people, however, the cocoon color mainly settles on sericin and it basically falls off after reeling. Currently, there are no varieties applied to production due to the formation mechanism of cocoon color is not clear. The formation of cocoon color involves multiple gene regulations. Previous studies have shown that the main genes regulating cocoon traits are the yellow blood (Y) gene, yellow blood inhibitor (I) gene, and yellow cocoon (C) gene. Among them, the products of the Y gene and C gene have been studied, but the I gene is still unclear. In this study, the midgut tissues of the yellow (NB) and the white (306) cocoon silkworm were analyzed by whole transcriptome sequencing. The results showed that there are 1639 DE-circRNAs, 70 DE-miRNAs, and 3225 DE-mRNAs, including 1785 up-regulated genes and 1440 down-regulated genes. GO and KEGG annotation results indicated that DE-mRNAs are mainly involved in intracellular transport, signal transduction, lipid transport, and metabolic processes. Two key genes, KWMTBOMO10339 and KWMTBOMO16553, were screened out according to the annotation results, which were involved in amino acid transport and ion exchange function, respectively. The interaction analysis between ncRNA and target genes showed that there were five miRNAs regulating these two genes. The qPCR analysis showed that the I gene was down-regulated, and the miRNA expression profiles were most up-regulated. Therefore, during the yellow and white cocoon formation, KWMTBOMO10339 and KWMTBOMO16553 may be regulated by miRNA, resulting in the non-expression of KWMTBOMO10339 and KWMTBOMO16553 in yellow cocoon silkworm, and the pigment molecules can enter hemolymph from the midgut to form yellow blood, then transport to the middle silk gland to finally form yellow cocoons.
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Takeshima M, Ogihara MH, Kataoka H. Characterization and functional analysis of BmSR-B1 for phytosterol uptake. Steroids 2022; 184:109039. [PMID: 35588900 DOI: 10.1016/j.steroids.2022.109039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Revised: 04/13/2022] [Accepted: 04/21/2022] [Indexed: 11/19/2022]
Abstract
Insects cannot synthesize sterols, such as cholesterol, and require sterols in their diet. Phytophagous insects use dietary phytosterols as a source of cholesterol. Sterols are transported from the midgut by the insect lipoprotein, lipophorin (Lp), although mechanisms for uptake of phytosterols into tissues are unclear. This study characterizes Scavenger Receptor class B type1 (SR-B1) from Bombyx mori (BmSR-B1) as molecules related to phytosterol uptake. According to sterol quantification using LC-MS/MS analysis, the midgut and fat body were phytosterol-rich relative to cholesterol-rich brain and prothoracic glands. Gene expression analysis of Bmsr-b1 in silkworm tissues showed that the genes Bmsr-b1_2, 3, 4, 6, and 10 were expressed in the midgut and fat body. To characterize the function of BmSR-B1, 11 BmSR-B1 homologs expressed in Bombyx ovary-derived BmN cells and Drosophila melanogaster embryo-derived Schneider 2 (S2) cells were incubated with purified Lp. Our analysis showed that BmSR-B1_3 induced the accumulation of campesterol and BmSR-B1_4 induced the accumulation of β-sitosterol and campesterol in culture cells. BmSR-B1 incorporated specific phytosterols into insect cells by selective uptake across the cell membrane where BmSR-B1 was localized. In conclusion, our study demonstrated that one function of BmSR-B1 is the uptake of phytosterols into silkworm tissues.
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Affiliation(s)
- Mika Takeshima
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
| | - Mari H Ogihara
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan; Institute of Livestock and Grassland Science, National Agriculture and Food Research Organization, 2 Ikenodai, Tsukuba, Ibaraki 305-0901, Japan.
| | - Hiroshi Kataoka
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
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Maksimov EG, Laptev GY, Blokhin DS, Klochkov VV, Slonimskiy YB, Sluchanko NN, Friedrich T, Chang CF, Polshakov VI. NMR resonance assignment and backbone dynamics of a C-terminal domain homolog of orange carotenoid protein. BIOMOLECULAR NMR ASSIGNMENTS 2021; 15:17-23. [PMID: 32939684 DOI: 10.1007/s12104-020-09976-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Accepted: 09/11/2020] [Indexed: 05/15/2023]
Abstract
Photoprotection in cyanobacteria is mediated by the Orange Carotenoid Protein (OCP), a two-domain photoswitch which has multiple natural homologs of its N- and C-terminal domains. Recently, it was demonstrated that C-terminal domain homologs (CTDHs) of OCP are standalone carotenoproteins participating in multidirectional carotenoid transfer between membranes and proteins. Non-covalent embedment of a ketocarotenoid causes dimerization of the small 16-kDa water-soluble CTDH protein; however, dynamic interactions of CTDH with membranes and other proteins apparently require the monomeric state. Although crystallography recently provided static snapshots of the Anabaena CTDH (AnaCTDH) spatial structure in the apo-form, which predicted mobility of some putative functional segments, no crystallographic information on the holo-form of CTDH is presently available. In order to use NMR techniques to cope with the dynamics of the AnaCTDH protein, it was necessary to obtain 1H, 13C and 15N resonance assignments. AnaCTDH samples enriched with 13C and 15N isotopes were prepared using recombinant protein expression, and NMR resonance assignment was achieved for more than 90% of the residues. The obtained results revealed that the structure of AnaCTDH in solution and in the crystal are largely equivalent. Together with 15N NMR relaxation experiments, our data shed light on the AnaCTDH dynamics and provide the platform for the subsequent analysis of the holo-CTDH structure in solution, for the better understanding of light-triggered protein-protein interactions and the development of antioxidant nanocarriers for biomedical applications in the future.
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Affiliation(s)
- Eugene G Maksimov
- Center for Magnetic Tomography and Spectroscopy, Faculty of Fundamental Medicine, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991.
- A.N. Bach Institute of Biochemistry, Federal Research Center, "Fundamentals of Biotechnology" of the Russian Academy of Sciences, Moscow, Russia, 119071.
- Laboratory of Physical Chemistry of Biomembranes, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991.
| | - Gennady Yu Laptev
- Center for Magnetic Tomography and Spectroscopy, Faculty of Fundamental Medicine, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991
| | - Dmitriy S Blokhin
- NMR Laboratory, Institute of Physics, Kazan Federal University, 18 Kremlevskaya st., Kazan, Russia, 420008
| | - Vladimir V Klochkov
- NMR Laboratory, Institute of Physics, Kazan Federal University, 18 Kremlevskaya st., Kazan, Russia, 420008
| | - Yury B Slonimskiy
- A.N. Bach Institute of Biochemistry, Federal Research Center, "Fundamentals of Biotechnology" of the Russian Academy of Sciences, Moscow, Russia, 119071
| | - Nikolai N Sluchanko
- A.N. Bach Institute of Biochemistry, Federal Research Center, "Fundamentals of Biotechnology" of the Russian Academy of Sciences, Moscow, Russia, 119071
| | - Thomas Friedrich
- Institute of Chemistry PC 14, Technische Universität Berlin, Strasse des 17. Juni 135, 10623, Berlin, Germany
| | - Chi-Fon Chang
- Genomics Research Center, Academia Sinica, Taipei, Taiwan, Republic of China
| | - Vladimir I Polshakov
- Center for Magnetic Tomography and Spectroscopy, Faculty of Fundamental Medicine, M.V. Lomonosov Moscow State University, Moscow, Russia, 119991.
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Yang M, Wang Y, Liu Q, Liu Z, Jiang F, Wang H, Guo X, Zhang J, Kang L. A β-carotene-binding protein carrying a red pigment regulates body-color transition between green and black in locusts. eLife 2019; 8:e41362. [PMID: 30616714 PMCID: PMC6324882 DOI: 10.7554/elife.41362] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 12/17/2018] [Indexed: 02/01/2023] Open
Abstract
Changes of body color have important effects for animals in adapting to variable environments. The migratory locust exhibits body color polyphenism between solitary and gregarious individuals, with the former displaying a uniform green coloration and the latter having a prominent pattern of black dorsal and brown ventral surface. However, the molecular mechanism underlying the density-dependent body color changes of conspecific locusts remain largely unknown. Here, we found that upregulation of β-carotene-binding protein promotes the accumulation of red pigment, which added to the green color palette present in solitary locusts changes it from green to black, and that downregulation of this protein led to the reverse, changing the color of gregarious locusts from black to green. Our results provide insight that color changes of locusts are dependent on variation in the red β-carotene pigment binding to βCBP. This finding of animal coloration corresponds with trichromatic theory of color vision.
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Affiliation(s)
- Meiling Yang
- State Key Laboratory of Integrated Management of Pest Insects and RodentsInstitute of Zoology, Chinese Academy of SciencesBeijingChina
| | - Yanli Wang
- Institute of Applied BiologyShanxi UniversityTaiyuanChina
| | - Qing Liu
- State Key Laboratory of Integrated Management of Pest Insects and RodentsInstitute of Zoology, Chinese Academy of SciencesBeijingChina
- Sino-Danish CollegeUniversity of Chinese Academy of SciencesBeijingChina
| | - Zhikang Liu
- State Key Laboratory of Integrated Management of Pest Insects and RodentsInstitute of Zoology, Chinese Academy of SciencesBeijingChina
| | - Feng Jiang
- Beijing Institutes of Life Science, Chinese Academy of SciencesBeijingChina
| | - Huimin Wang
- Beijing Institutes of Life Science, Chinese Academy of SciencesBeijingChina
| | - Xiaojiao Guo
- State Key Laboratory of Integrated Management of Pest Insects and RodentsInstitute of Zoology, Chinese Academy of SciencesBeijingChina
| | - Jianzhen Zhang
- Institute of Applied BiologyShanxi UniversityTaiyuanChina
| | - Le Kang
- State Key Laboratory of Integrated Management of Pest Insects and RodentsInstitute of Zoology, Chinese Academy of SciencesBeijingChina
- Beijing Institutes of Life Science, Chinese Academy of SciencesBeijingChina
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Dong XL, Pan CX, Zhang MJ. A Novel Gene Bombyx mori Carotenoid Oxygenases and Retinal Isomerase (BmCORI) Related to β-Carotene Depletion. Biochem Genet 2018. [PMID: 29536214 DOI: 10.1007/s10528-018-9853-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
Carotenoids are the precursors of Vitamin A. They are cleaved by carotenoid oxygenase and then isomerized by retinoid isomerase. In this study, we identified a gene, Bombyx mori Carotenoid Oxygenases and Retinal Isomerase (BmCORI), which was the homolog of β-carotene 15,15'-monooxygenase and the retinal pigment epithelium protein of 65 kD. Further analysis indicated that the expression of BmCORI in silkworms was significantly higher in females than in males. We also found that the β-carotene content in BmCORI-expressed human embryonic kidney 293 cells was significantly lower than in the controls, while the lutein content showed a slight difference. These results suggested that BmCORI is related to carotenoid depletion, especially β-carotene depletion. Our research provides new insight into the study of BmCORI function.
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Affiliation(s)
- Xiao-Long Dong
- College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.
| | - Cai-Xia Pan
- College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China
| | - Min-Juan Zhang
- College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, People's Republic of China
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Dong XL, Wu YF, Liu TH, Wang W, Pan CX, Adur M, Zhang MJ, Pan MH, Lu C. Bombyx mori protein BmREEPa and BmPtchd could form a complex with BmNPV envelope protein GP64. Biochem Biophys Res Commun 2017; 490:1254-1259. [DOI: 10.1016/j.bbrc.2017.07.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 07/02/2017] [Indexed: 11/24/2022]
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Dong XL, Liu TH, Wang W, Pan CX, Wu YF, Du GY, Chen P, Lu C, Pan MH. BmREEPa Is a Novel Gene that Facilitates BmNPV Entry into Silkworm Cells. PLoS One 2015; 10:e0144575. [PMID: 26656276 PMCID: PMC4681539 DOI: 10.1371/journal.pone.0144575] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Accepted: 11/22/2015] [Indexed: 11/26/2022] Open
Abstract
We previously established two silkworm cell lines, BmN-SWU1 and BmN-SWU2, from Bombyx mori ovaries. BmN-SWU1 cells are susceptible while BmN-SWU2 cells are highly resistant to BmNPV infection. Interestingly, we found that the entry of BmNPV into BmN-SWU2 cells was largely inhibited. To explore the mechanism of this inhibition, in this study we used isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative protein expression profiling and identified 629 differentially expressed proteins between the two cell lines. Among them, we identified a new membrane protein termed BmREEPa. The gene encoding BmREEPa transcribes two splice variants; a 573 bp long BmREEPa-L encoding a protein with 190 amino acids and a 501 bp long BmREEPa-S encoding a protein with 166 amino acids. BmREEPa contains a conserved TB2/DP, HVA22 domain and three transmembrane domains. It is localized in the plasma membrane with a cytoplasmic C-terminus and an extracellular N-terminus. We found that limiting the expression of BmREEPa in BmN-SWU1 cells inhibited BmNPV entry, whereas over-expression of BmREEPa in BmN-SWU2 cells promoted BmNPV entry. Our results also indicated that BmREEPa can interact with GP64, which is the key envelope fusion protein for BmNPV entry. Taken together, the findings of our study revealed that BmREEPa is required for BmNPV to gain entry into silkworm cells, and may provide insights for the identification of BmNPV receptors.
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Affiliation(s)
- Xiao-long Dong
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, China
| | - Tai-hang Liu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Wei Wang
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Cai-xia Pan
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Yun-fei Wu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Guo-yu Du
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Peng Chen
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Cheng Lu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, China
- * E-mail: (M-HP); (CL)
| | - Min-hui Pan
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Key Laboratory for Sericulture Functional Genomics and Biotechnology of Agricultural Ministry, Southwest University, Chongqing, China
- * E-mail: (M-HP); (CL)
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Li JY, Ye LP, Che JQ, Song J, You ZY, Yun KC, Wang SH, Zhong BX. Comparative proteomic analysis of the silkworm middle silk gland reveals the importance of ribosome biogenesis in silk protein production. J Proteomics 2015; 126:109-20. [DOI: 10.1016/j.jprot.2015.06.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Revised: 05/19/2015] [Accepted: 06/01/2015] [Indexed: 01/20/2023]
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Vachali PP, Li B, Bartschi A, Bernstein PS. Surface plasmon resonance (SPR)-based biosensor technology for the quantitative characterization of protein-carotenoid interactions. Arch Biochem Biophys 2015; 572:66-72. [PMID: 25513962 PMCID: PMC4402104 DOI: 10.1016/j.abb.2014.12.005] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Revised: 11/22/2014] [Accepted: 12/04/2014] [Indexed: 11/27/2022]
Abstract
The surface plasmon resonance (SPR) biosensor method is a highly sensitive, label-free technique to study the non-covalent interactions of biomolecules, especially protein-protein and protein-small molecule interactions. We have explored this robust biosensor platform to study the interactions of carotenoid-binding proteins and their carotenoid ligands to assess the specificity of interaction, kinetics, affinity, and stoichiometry. These characterizations are important to further study uptake and transport of carotenoids to targeted tissues such as the macula of the human eye. In this review, we present an overview of the SPR method and optimization of assay conditions, and we discuss the particular challenges in studying carotenoid-protein interactions using SPR.
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Affiliation(s)
- Preejith P Vachali
- Moran Eye Center, University of Utah School of Medicine, 65 Mario Capecchi Drive, Salt Lake City, UT 84132, United States
| | - Binxing Li
- Moran Eye Center, University of Utah School of Medicine, 65 Mario Capecchi Drive, Salt Lake City, UT 84132, United States
| | - Alexis Bartschi
- Moran Eye Center, University of Utah School of Medicine, 65 Mario Capecchi Drive, Salt Lake City, UT 84132, United States
| | - Paul S Bernstein
- Moran Eye Center, University of Utah School of Medicine, 65 Mario Capecchi Drive, Salt Lake City, UT 84132, United States.
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Recent progress in molecular genetic studies on the carotenoid transport system using cocoon-color mutants of the silkworm. Arch Biochem Biophys 2015; 572:151-157. [PMID: 25579881 DOI: 10.1016/j.abb.2014.12.029] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 12/19/2014] [Accepted: 12/29/2014] [Indexed: 11/23/2022]
Abstract
The existence of tissue-specific delivery for certain carotenoids is supported by genetic evidence from the silkworm Bombyx mori and the identification of cocoon color mutant genes, such as Yellow blood (Y), Yellow cocoon (C), and Flesh cocoon (F). Mutants with white cocoons are defective in one of the steps involved in transporting carotenoids from the midgut lumen to the middle silk gland via the hemolymph lipoprotein, lipophorin, and the different colored cocoons are caused by the accumulation of specific carotenoids into the middle silk gland. The Y gene encodes carotenoid-binding protein (CBP), which is expected to function as the cytosolic transporter of carotenoids across the enterocyte and epithelium of the middle silk gland. The C and F genes encode the C locus-associated membrane protein, which is homologous to a mammalian high-density lipoprotein receptor-2 (Cameo2) and scavenger receptor class B member 15 (SCRB15), respectively; these membrane proteins are expected to function as non-internalizing lipophorin receptors in the middle silk gland. Cameo2 and SCRB15 belong to the cluster determinant 36 (CD36) family, with Cameo2 exhibiting specificity not only for lutein, but also for zeaxanthin and astaxanthin, while SCRB15 seems to have specificity toward carotene substrates such as α-carotene and β-carotene. These findings suggest that Cameo2 and SCRB15 can discriminate the chemical structure of lutein and β-carotene from circulating lipophorin during uptake. These data provide the first evidence that CD36 family proteins can discriminate individual carotenoid molecules in lipophorin.
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