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For: Burney PR, White N, Pfaendtner J. Structural effects of methionine oxidation on isolated subdomains of human fibrin D and αC regions. PLoS One 2014;9:e86981. [PMID: 24475207 DOI: 10.1371/journal.pone.0086981] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Accepted: 12/16/2013] [Indexed: 11/26/2022]  Open
Number Cited by Other Article(s)
1
Nencini F, Bettiol A, Argento FR, Borghi S, Giurranna E, Emmi G, Prisco D, Taddei N, Fiorillo C, Becatti M. Post-translational modifications of fibrinogen: implications for clotting, fibrin structure and degradation. MOLECULAR BIOMEDICINE 2024;5:45. [PMID: 39477884 PMCID: PMC11525374 DOI: 10.1186/s43556-024-00214-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Accepted: 09/24/2024] [Indexed: 11/02/2024]  Open
2
Lee JH, Ward KR. Blood failure: traumatic hemorrhage and the interconnections between oxygen debt, endotheliopathy, and coagulopathy. Clin Exp Emerg Med 2024;11:9-21. [PMID: 38018069 PMCID: PMC11009713 DOI: 10.15441/ceem.23.127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Accepted: 09/28/2023] [Indexed: 11/30/2023]  Open
3
D’Amore V, Donati G, Lenci E, Ludwig BS, Kossatz S, Baiula M, Trabocchi A, Kessler H, Di Leva FS, Marinelli L. Molecular View on the iRGD Peptide Binding Mechanism: Implications for Integrin Activity and Selectivity Profiles. J Chem Inf Model 2023;63:6302-6315. [PMID: 37788340 PMCID: PMC10598797 DOI: 10.1021/acs.jcim.3c01071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Indexed: 10/05/2023]
4
Kuang C, Li D, Zhou X, Lin H, Zhang R, Xu H, Huang S, Tang F, Liu F, Tang D, Dai Y. Proteomic analysis of lysine 2-hydroxyisobutyryl in SLE reveals protein modification alteration in complement and coagulation cascades and platelet activation Pathways. BMC Med Genomics 2023;16:247. [PMID: 37845672 PMCID: PMC10577913 DOI: 10.1186/s12920-023-01656-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 09/06/2023] [Indexed: 10/18/2023]  Open
5
Han CY, Wang X, Ringgold KM, Bennett JC, St John AE, Berenson R, Stern SA, White NJ. A novel melanocortin fusion protein inhibits fibrinogen oxidation and degradation during trauma-induced coagulopathy. Blood 2023;142:724-741. [PMID: 37363829 DOI: 10.1182/blood.2022019164] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 05/04/2023] [Accepted: 05/19/2023] [Indexed: 06/28/2023]  Open
6
Tracking oxidation-induced alterations in fibrin clot formation by NMR-based methods. Sci Rep 2021;11:15691. [PMID: 34344919 PMCID: PMC8333047 DOI: 10.1038/s41598-021-94401-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 07/05/2021] [Indexed: 12/12/2022]  Open
7
Hutanu A, Hauser PC, Moritz B, Kiessig S, Noël A, Stracke JO, Wild M, Schwarz MA. Methionine oxidation of proteins analyzed by affinity capillary electrophoresis in presence of silver(I) and gold(III) ions. Electrophoresis 2021;42:1209-1216. [PMID: 33651405 PMCID: PMC9291207 DOI: 10.1002/elps.202000355] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 01/25/2021] [Accepted: 02/12/2021] [Indexed: 11/08/2022]
8
Sovová Ž, Štikarová J, Kaufmanová J, Májek P, Suttnar J, Šácha P, Malý M, Dyr JE. Impact of posttranslational modifications on atomistic structure of fibrinogen. PLoS One 2020;15:e0227543. [PMID: 31995579 PMCID: PMC6988951 DOI: 10.1371/journal.pone.0227543] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 12/20/2019] [Indexed: 01/09/2023]  Open
9
Smith J, McMullen P, Yuan Z, Pfaendtner J, Jiang S. Elucidating Molecular Design Principles for Charge-Alternating Peptides. Biomacromolecules 2019;21:435-443. [DOI: 10.1021/acs.biomac.9b01191] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
10
Yurina LV, Vasilyeva AD, Bugrova AE, Indeykina MI, Kononikhin AS, Nikolaev EN, Rosenfeld MA. Hypochlorite-Induced Oxidative Modification of Fibrinogen. DOKL BIOCHEM BIOPHYS 2019;484:37-41. [DOI: 10.1134/s1607672919010101] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Indexed: 12/22/2022]
11
Pederson EN, Interlandi G. Oxidation-induced destabilization of the fibrinogen αC-domain dimer investigated by molecular dynamics simulations. Proteins 2019;87:826-836. [PMID: 31134660 DOI: 10.1002/prot.25746] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Revised: 05/15/2019] [Accepted: 05/22/2019] [Indexed: 12/20/2022]
12
Yurina L, Vasilyeva A, Indeykina M, Bugrova A, Biryukova M, Kononikhin A, Nikolaev E, Rosenfeld M. Ozone-induced damage of fibrinogen molecules: identification of oxidation sites by high-resolution mass spectrometry. Free Radic Res 2019;53:430-455. [DOI: 10.1080/10715762.2019.1600686] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
13
Becatti M, Emmi G, Bettiol A, Silvestri E, Di Scala G, Taddei N, Prisco D, Fiorillo C. Behçet's syndrome as a tool to dissect the mechanisms of thrombo-inflammation: clinical and pathogenetic aspects. Clin Exp Immunol 2018;195:322-333. [PMID: 30472725 DOI: 10.1111/cei.13243] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/15/2018] [Indexed: 01/01/2023]  Open
14
Rosenfeld MA, Vasilyeva AD, Yurina LV, Bychkova AV. Oxidation of proteins: is it a programmed process? Free Radic Res 2017;52:14-38. [DOI: 10.1080/10715762.2017.1402305] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
15
Bychkova AV, Vasilyeva AD, Bugrova AE, Indeykina MI, Kononikhin AS, Nikolaev EN, Konstantinova ML, Rosenfeld MA. Oxidation-induced modification of the fibrinogen polypeptide chains. DOKL BIOCHEM BIOPHYS 2017;474:173-177. [PMID: 28726089 DOI: 10.1134/s1607672917030115] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Indexed: 11/22/2022]
16
Bjerkvig CK, Strandenes G, Eliassen HS, Spinella PC, Fosse TK, Cap AP, Ward KR. "Blood failure" time to view blood as an organ: how oxygen debt contributes to blood failure and its implications for remote damage control resuscitation. Transfusion 2017;56 Suppl 2:S182-9. [PMID: 27100755 DOI: 10.1111/trf.13500] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2015] [Revised: 12/22/2015] [Accepted: 12/22/2015] [Indexed: 01/08/2023]
17
Han M, Xu J, Ren Y. Sampling conformational space of intrinsically disordered proteins in explicit solvent: Comparison between well-tempered ensemble approach and solute tempering method. J Mol Graph Model 2016;72:136-147. [PMID: 28092832 DOI: 10.1016/j.jmgm.2016.12.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 12/18/2016] [Accepted: 12/23/2016] [Indexed: 10/20/2022]
18
Han M, Xu J, Ren Y. Compromise in competition between free energy and binding effect of intrinsically disordered protein p53 C-terminal domain. MOLECULAR SIMULATION 2016. [DOI: 10.1080/08927022.2016.1237023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
19
White NJ, Wang Y, Fu X, Cardenas JC, Martin EJ, Brophy DF, Wade CE, Wang X, St John AE, Lim EB, Stern SA, Ward KR, López JA, Chung D. Post-translational oxidative modification of fibrinogen is associated with coagulopathy after traumatic injury. Free Radic Biol Med 2016;96:181-9. [PMID: 27105953 PMCID: PMC4912420 DOI: 10.1016/j.freeradbiomed.2016.04.023] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/26/2016] [Revised: 04/13/2016] [Accepted: 04/17/2016] [Indexed: 12/16/2022]
20
Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics. J Mol Graph Model 2016;68:114-127. [PMID: 27423742 DOI: 10.1016/j.jmgm.2016.06.015] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2015] [Revised: 06/22/2016] [Accepted: 06/29/2016] [Indexed: 11/22/2022]
21
Rosenfeld MA, Bychkova AV, Shchegolikhin AN, Leonova VB, Kostanova EA, Biryukova MI, Sultimova NB, Konstantinova ML. Fibrin self-assembly is adapted to oxidation. Free Radic Biol Med 2016;95:55-64. [PMID: 26969792 DOI: 10.1016/j.freeradbiomed.2016.03.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2015] [Revised: 02/29/2016] [Accepted: 03/07/2016] [Indexed: 10/22/2022]
22
Valsson O, Tiwary P, Parrinello M. Enhancing Important Fluctuations: Rare Events and Metadynamics from a Conceptual Viewpoint. Annu Rev Phys Chem 2016;67:159-84. [DOI: 10.1146/annurev-physchem-040215-112229] [Citation(s) in RCA: 355] [Impact Index Per Article: 44.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
23
Rosenfeld MA, Leonova VB, Bychkova AV, Kostanova EA, Biryukova MI, Sultimova NB, Konstantinova ML, Gorobets MG. The strengthening role of D:D interactions in fibrin self-assembly under oxidation. DOKL BIOCHEM BIOPHYS 2016;466:28-31. [PMID: 27025482 DOI: 10.1134/s1607672916010087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Indexed: 11/23/2022]
24
Iron modulates the alpha chain of fibrinogen. Biometals 2016;29:235-8. [DOI: 10.1007/s10534-016-9909-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2015] [Accepted: 12/31/2015] [Indexed: 10/22/2022]
25
Regulation of thrombosis and vascular function by protein methionine oxidation. Blood 2015;125:3851-9. [PMID: 25900980 DOI: 10.1182/blood-2015-01-544676] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 04/14/2015] [Indexed: 02/07/2023]  Open
26
Mechanisms of trauma-induced coagulopathy. Curr Opin Hematol 2015;21:404-9. [PMID: 25010798 DOI: 10.1097/moh.0000000000000063] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
27
Coagulation in trauma. TRENDS IN ANAESTHESIA AND CRITICAL CARE 2015. [DOI: 10.1016/j.tacc.2014.10.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
28
Palazzesi F, Prakash MK, Bonomi M, Barducci A. Accuracy of Current All-Atom Force-Fields in Modeling Protein Disordered States. J Chem Theory Comput 2014;11:2-7. [DOI: 10.1021/ct500718s] [Citation(s) in RCA: 92] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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