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Etges WJ. Evolutionary genomics of host plant adaptation: insights from Drosophila. CURRENT OPINION IN INSECT SCIENCE 2019; 36:96-102. [PMID: 31542627 DOI: 10.1016/j.cois.2019.08.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 08/13/2019] [Accepted: 08/19/2019] [Indexed: 06/10/2023]
Abstract
Variation in gene expression in response to the use of alternate host plants can reveal genetic and physiological mechanisms explaining why insect-host relationships vary from host specialism to generalism. Interpreting transcriptome variation relies on well-annotated genomes, making drosophilids valuable model systems, particularly those species with tractable ecological associations. Patterns of whole genome expression and alternate gene splicing in response to growth on different hosts have revealed expression of gene networks of known detoxification genes as well as novel functionally enriched genes of diverse metabolic and structural functions. Integrating trancriptomic responses with fitness differences and levels of phenotypic plasticity in response to alternate hosts will help to reveal the general nature of genotype-phenotype relationships.
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Affiliation(s)
- William J Etges
- Ecology, Evolution and Organismal Biology, Department of Biological Sciences, SCEN 632, 1 University of Arkansas, Fayetteville, AR 72701, USA.
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Pang R, Chen M, Yue L, Xing K, Li T, Kang K, Liang Z, Yuan L, Zhang W. A distinct strain of Arsenophonus symbiont decreases insecticide resistance in its insect host. PLoS Genet 2018; 14:e1007725. [PMID: 30332402 PMCID: PMC6205657 DOI: 10.1371/journal.pgen.1007725] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Revised: 10/29/2018] [Accepted: 09/30/2018] [Indexed: 02/07/2023] Open
Abstract
Symbiotic bacteria are important drivers of phenotypic diversity in insects. One of the widespread symbionts to have emerged belongs to the genus Arsenophonus, however, its biological functions in most host insects remain entirely unknown. Here we report two distinct Arsenophonus strains in the brown planthopper (BPH), Nilaparvata lugens, a major pest insect in Asian countries that causes significant economic damage through rice crop destruction. Genomic resequencing data suggested that one Arsenophonus strain (S-type) negatively affected the insecticide resistance of the host. Indeed, replacement of the resident Arsenophonus with the S-type Arsenophonus significantly decreased host insecticide resistance. Transcriptome and metabolome analysis revealed down-regulation of xenobiotic metabolism and increased amino acid accumulation in the S-type Arsenophonus infected host. This study demonstrates how a symbiont-mediated phenotypic change can occur. The results of this study will aid in developing strategies that work through imposing an ecological disadvantage on insect pests, which will be of great value for pest control in agricultural industry.
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Affiliation(s)
- Rui Pang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Institute of Microbiology, Guangzhou, China
| | - Meng Chen
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Lei Yue
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Ke Xing
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Tengchao Li
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Kui Kang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Zhikun Liang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Longyu Yuan
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Wenqing Zhang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
- * E-mail:
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Mitchell CL, Latuszek CE, Vogel KR, Greenlund IM, Hobmeier RE, Ingram OK, Dufek SR, Pecore JL, Nip FR, Johnson ZJ, Ji X, Wei H, Gailing O, Werner T. α-amanitin resistance in Drosophila melanogaster: A genome-wide association approach. PLoS One 2017; 12:e0173162. [PMID: 28241077 PMCID: PMC5328632 DOI: 10.1371/journal.pone.0173162] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Accepted: 02/15/2017] [Indexed: 11/17/2022] Open
Abstract
We investigated the mechanisms of mushroom toxin resistance in the Drosophila Genetic Reference Panel (DGRP) fly lines, using genome-wide association studies (GWAS). While Drosophila melanogaster avoids mushrooms in nature, some lines are surprisingly resistant to α-amanitin—a toxin found solely in mushrooms. This resistance may represent a pre-adaptation, which might enable this species to invade the mushroom niche in the future. Although our previous microarray study had strongly suggested that pesticide-metabolizing detoxification genes confer α-amanitin resistance in a Taiwanese D. melanogaster line Ama-KTT, none of the traditional detoxification genes were among the top candidate genes resulting from the GWAS in the current study. Instead, we identified Megalin, Tequila, and widerborst as candidate genes underlying the α-amanitin resistance phenotype in the North American DGRP lines, all three of which are connected to the Target of Rapamycin (TOR) pathway. Both widerborst and Tequila are upstream regulators of TOR, and TOR is a key regulator of autophagy and Megalin-mediated endocytosis. We suggest that endocytosis and autophagy of α-amanitin, followed by lysosomal degradation of the toxin, is one of the mechanisms that confer α-amanitin resistance in the DGRP lines.
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Affiliation(s)
- Chelsea L Mitchell
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Catrina E Latuszek
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Kara R Vogel
- Department of Neurology, University of Wisconsin School of Medicine and Public Health, 1300 University Ave., Madison, WI, United States of America
| | - Ian M Greenlund
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Rebecca E Hobmeier
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Olivia K Ingram
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Shannon R Dufek
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Jared L Pecore
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Felicia R Nip
- College of Human Medicine, Michigan State University, Clinical Center, East Lansing, MI, United States of America
| | - Zachary J Johnson
- U.S. Forest Service, Salt Lake Ranger District 6944 S, 3000 E, Salt Lake City, UT, United States of America
| | - Xiaohui Ji
- School of Forest Resources and Environmental Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Hairong Wei
- School of Forest Resources and Environmental Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Oliver Gailing
- School of Forest Resources and Environmental Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
| | - Thomas Werner
- Department of Biological Sciences, Michigan Technological University, 1400 Townsend Dr., Houghton, MI, United States of America
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Højland DH, Kristensen M. Analysis of Differentially Expressed Genes Related to Resistance in Spinosad- and Neonicotinoid-Resistant Musca domestica L. (Diptera: Muscidae) Strains. PLoS One 2017; 12:e0170935. [PMID: 28125739 PMCID: PMC5268453 DOI: 10.1371/journal.pone.0170935] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 01/12/2017] [Indexed: 12/31/2022] Open
Abstract
Background The housefly is a global pest that has developed resistance to most insecticides applied against it. Resistance of the spinosad-resistant strain 791spin and the neonicotinoid-resistant 766b strain is believed to be due to metabolism. We investigate differentially expressed genes in these two resistant strains related to metabolism in comparison with an insecticide-susceptible reference strain. Results Genes involved in metabolism of xenobiotics were primarily up-regulated in resistant flies with some differences between resistant strains. The cyp4g98 and cyp6g4 genes proved interesting in terms of neonicotinoid resistance, while cyp4d9 was overexpressed in 791spin compared to spinosad-susceptible strains. GSTs, ESTs and UGTs were mostly overexpressed, but not to the same degree as P450s. We present a comprehensive and comparative picture of gene expression in three housefly strains differing significantly in their response to insecticides. High differential expression of P450s and genes coding for cuticle protein indicates a combination of factors involved in metabolic neonicotinoid and spinosad resistance. Conclusion Resistance in these strains is apparently not linked to the alteration of a single gene but is composed of several changes including differential expression of genes encoding metabolic detoxification enzymes.
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Affiliation(s)
| | - Michael Kristensen
- Department of Agroecology, Aarhus University, Slagelse, Denmark
- * E-mail:
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Najarro MA, Hackett JL, Smith BR, Highfill CA, King EG, Long AD, Macdonald SJ. Identifying Loci Contributing to Natural Variation in Xenobiotic Resistance in Drosophila. PLoS Genet 2015; 11:e1005663. [PMID: 26619284 PMCID: PMC4664282 DOI: 10.1371/journal.pgen.1005663] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Accepted: 10/21/2015] [Indexed: 12/12/2022] Open
Abstract
Natural populations exhibit a great deal of interindividual genetic variation in the response to toxins, exemplified by the variable clinical efficacy of pharmaceutical drugs in humans, and the evolution of pesticide resistant insects. Such variation can result from several phenomena, including variable metabolic detoxification of the xenobiotic, and differential sensitivity of the molecular target of the toxin. Our goal is to genetically dissect variation in the response to xenobiotics, and characterize naturally-segregating polymorphisms that modulate toxicity. Here, we use the Drosophila Synthetic Population Resource (DSPR), a multiparent advanced intercross panel of recombinant inbred lines, to identify QTL (Quantitative Trait Loci) underlying xenobiotic resistance, and employ caffeine as a model toxic compound. Phenotyping over 1,700 genotypes led to the identification of ten QTL, each explaining 4.5-14.4% of the broad-sense heritability for caffeine resistance. Four QTL harbor members of the cytochrome P450 family of detoxification enzymes, which represent strong a priori candidate genes. The case is especially strong for Cyp12d1, with multiple lines of evidence indicating the gene causally impacts caffeine resistance. Cyp12d1 is implicated by QTL mapped in both panels of DSPR RILs, is significantly upregulated in the presence of caffeine, and RNAi knockdown robustly decreases caffeine tolerance. Furthermore, copy number variation at Cyp12d1 is strongly associated with phenotype in the DSPR, with a trend in the same direction observed in the DGRP (Drosophila Genetic Reference Panel). No additional plausible causative polymorphisms were observed in a full genomewide association study in the DGRP, or in analyses restricted to QTL regions mapped in the DSPR. Just as in human populations, replicating modest-effect, naturally-segregating causative variants in an association study framework in flies will likely require very large sample sizes.
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Affiliation(s)
- Michael A. Najarro
- Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, United States of America
| | - Jennifer L. Hackett
- Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, United States of America
| | - Brittny R. Smith
- Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, United States of America
| | - Chad A. Highfill
- Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, United States of America
| | - Elizabeth G. King
- Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America
| | - Anthony D. Long
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, United States of America
| | - Stuart J. Macdonald
- Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, United States of America
- Center for Computational Biology, University of Kansas, Lawrence, Kansas, United States of America
- * E-mail:
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Abstract
Flies of the genus Drosophila, and particularly those of the species Drosophila melanogaster, are best known as laboratory organisms. As with all model organisms, they were domesticated for empirical studies, but they also continue to exist as wild populations. Decades of research on these flies in the laboratory have produced astounding and important insights into basic biological processes, but we have only scratched the surface of what they have to offer as research organisms. An outstanding challenge now is to build on this knowledge and explore how natural history has shaped D. melanogaster in order to advance our understanding of biology more generally. DOI:http://dx.doi.org/10.7554/eLife.06793.001
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Affiliation(s)
- Therese Ann Markow
- Division of Biological Sciences, Laboratorio Nacional para Genomica de la Biodiversidad, La Jolla, United States
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Mitchell CL, Yeager RD, Johnson ZJ, D’Annunzio SE, Vogel KR, Werner T. Long-Term Resistance of Drosophila melanogaster to the Mushroom Toxin Alpha-Amanitin. PLoS One 2015; 10:e0127569. [PMID: 25978397 PMCID: PMC4433104 DOI: 10.1371/journal.pone.0127569] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Accepted: 04/16/2015] [Indexed: 11/19/2022] Open
Abstract
Insect resistance to toxins exerts not only a great impact on our economy, but also on the ecology of many species. Resistance to one toxin is often associated with cross-resistance to other, sometimes unrelated, chemicals. In this study, we investigated mushroom toxin resistance in the fruit fly Drosophila melanogaster (Meigen). This fruit fly species does not feed on mushrooms in nature and may thus have evolved cross-resistance to α-amanitin, the principal toxin of deadly poisonous mushrooms, due to previous pesticide exposure. The three Asian D. melanogaster stocks used in this study, Ama-KTT, Ama-MI, and Ama-KLM, acquired α-amanitin resistance at least five decades ago in their natural habitats in Taiwan, India, and Malaysia, respectively. Here we show that all three stocks have not lost the resistance phenotype despite the absence of selective pressure over the past half century. In response to α-amanitin in the larval food, several signs of developmental retardation become apparent in a concentration-dependent manner: higher pre-adult mortality, prolonged larva-to-adult developmental time, decreased adult body size, and reduced adult longevity. In contrast, female fecundity nearly doubles in response to higher α-amanitin concentrations. Our results suggest that α-amanitin resistance has no fitness cost, which could explain why the resistance has persisted in all three stocks over the past five decades. If pesticides caused α-amanitin resistance in D. melanogaster, their use may go far beyond their intended effects and have long-lasting effects on ecosystems.
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Affiliation(s)
- Chelsea L. Mitchell
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, United States of America
| | - Roger D. Yeager
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, United States of America
| | - Zachary J. Johnson
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, United States of America
| | - Stephanie E. D’Annunzio
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, United States of America
| | - Kara R. Vogel
- Department of Experimental and Systems Pharmacology, Washington State University, Spokane, Washington, United States of America
| | - Thomas Werner
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, United States of America
- * E-mail:
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