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Boulanger L, Planchon C, Taudière A, McCoy KD, Burgess STG, Nisbet AJ, Bartley K, Galliot P, Creach P, Sleeckx N, Roy L. The Poultry Red Mite, Dermanyssus gallinae, travels far but not frequently, and takes up permanent residence on farms. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2024; 120:105584. [PMID: 38521481 DOI: 10.1016/j.meegid.2024.105584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 03/13/2024] [Accepted: 03/15/2024] [Indexed: 03/25/2024]
Abstract
Management of Dermanyssus gallinae, a cosmopolitan hematophagous mite responsible for damage in layer poultry farming, is hampered by a lack of knowledge of its spatio-temporal population dynamics. Previous studies have shown that the circulation of this pest between farms is of strictly anthropogenic origin, that a mitochondrial haplogroup has been expanding on European farms since the beginning of the 21st century and that its local population growth may be particularly rapid. To refine our understanding of how D. gallinae spreads within and among farms, we characterized the genetic structure of mite populations at different spatial scales and sought to identify the main factors interrupting gene flow between poultry houses and between mitochondrial haplogroups. To this end, we selected and validated the first set of nuclear microsatellite markers for D. gallinae and sequenced a region of the CO1-encoding mitochondrial gene in a subsample of microsatellite-genotyped mites. We also tested certain conditions required for effective contamination of a poultry house through field experimentation, and conducted a survey of practices during poultry transfers. Our results confirm the role of poultry transport in the dissemination of mite populations, but the frequency of effective contamination after the introduction of contaminated material into poultry houses seems lower than expected. The high persistence of mites on farms, even during periods when poultry houses are empty and cleaned, and the very large number of nodes in the logistic network (large number of companies supplying pullets or transporting animals) undoubtedly explain the very high prevalence on farms. Substantial genetic diversity was measured in farm populations, probably as a result of the mite's known haplodiploid mode of sexual reproduction, coupled with the dense logistic network. The possibility of the occasional occurrence of asexual reproduction in this sexually reproducing mite was also revealed in our analyses, which could explain the extreme aggressiveness of its demographic dynamics under certain conditions.
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Affiliation(s)
- L Boulanger
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, 1919 route de Mende, 3400 Montpellier, France
| | - C Planchon
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, 1919 route de Mende, 3400 Montpellier, France
| | - A Taudière
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, 1919 route de Mende, 3400 Montpellier, France
| | - K D McCoy
- Université de Montpellier, CNRS, IRD, MIVEGEC, Domaine La Valette - 900, rue Jean François BRETON, 34090 Montpellier, France
| | - S T G Burgess
- Moredun Research Institute, Pentlands Science Park, Bush Loan, Edinburgh, Midlothian EH26 0PZ, UK
| | - A J Nisbet
- Moredun Research Institute, Pentlands Science Park, Bush Loan, Edinburgh, Midlothian EH26 0PZ, UK
| | - K Bartley
- Moredun Research Institute, Pentlands Science Park, Bush Loan, Edinburgh, Midlothian EH26 0PZ, UK
| | - P Galliot
- Institut Technique de l'AVIculture (ITAVI), FranceITAVI, 41 rue Beaucemaine, 22440 Ploufragan, France
| | - P Creach
- Institut Technique de l'AVIculture (ITAVI), FranceITAVI, 41 rue Beaucemaine, 22440 Ploufragan, France
| | - N Sleeckx
- Experimental Poultry Centre, 77 Poiel, Geel 2440, Belgium
| | - Lise Roy
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, 1919 route de Mende, 3400 Montpellier, France.
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2
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Booth W. Population genetics as a tool to understand invasion dynamics and insecticide resistance in indoor urban pest insects. CURRENT OPINION IN INSECT SCIENCE 2024; 62:101166. [PMID: 38253200 DOI: 10.1016/j.cois.2024.101166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 01/15/2024] [Accepted: 01/16/2024] [Indexed: 01/24/2024]
Abstract
Many indoor urban pest insects now show a near-global distribution. The reasons for this may be linked to their cryptic behaviors, which make unintentional transport likely, tied to their reliance on human-mediated dispersal that can result in spread over potentially long-distances. Additionally, numerous species exhibit an array of mechanisms that confer insecticide resistance. Using population genetics, it is possible to elucidate the genetic characteristics that define globally successful indoor urban pest insect species. Furthermore, this approach may be used to determine the frequency and distribution of insecticide resistance. Here, I review the recent literature that utilizes population genetic analyses in an effort to identify the characteristics that help explain the success of indoor urban pests.
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Affiliation(s)
- Warren Booth
- Department of Entomology, Virginia Polytechnic Institute and State University, 1015 Life Science Circle, 215C Steger Hall, Blacksburg, VA, USA.
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3
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Multiple invasions, Wolbachia and human-aided transport drive the genetic variability of Aedes albopictus in the Iberian Peninsula. Sci Rep 2022; 12:20682. [PMID: 36450768 PMCID: PMC9712423 DOI: 10.1038/s41598-022-24963-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 11/22/2022] [Indexed: 12/05/2022] Open
Abstract
The Asian tiger mosquito, Aedes albopictus, is one of the most invasive species in the world. Native to the tropical forests of Southeast Asia, over the past 30 years it has rapidly spread throughout tropical and temperate regions of the world. Its dramatic expansion has resulted in public health concerns as a consequence of its vector competence for at least 16 viruses. Previous studies showed that Ae. albopictus spread has been facilitated by human-mediated transportation, but much remains unknown about how this has affected its genetic attributes. Here we examined the factors that contributed to shaping the current genetic constitution of Ae. albopictus in the Iberian Peninsula, where the species was first found in 2004, by combining population genetics and Bayesian modelling. We found that both mitochondrial and nuclear DNA markers showed a lack of genetic structure and the presence of worldwide dominant haplotypes, suggesting regular introductions from abroad. Mitochondrial DNA showed little genetic diversity compared to nuclear DNA, likely explained by infection with maternally transmitted bacteria of the genus Wolbachia. Multilevel models revealed that greater mosquito fluxes (estimated from commuting patterns and tiger mosquito population distribution) and spatial proximity between sampling sites were associated with lower nuclear genetic distance, suggesting that rapid short- and medium-distance dispersal is facilitated by humans through vehicular traffic. This study highlights the significant role of human transportation in shaping the genetic attributes of Ae. albopictus and promoting regional gene flow, and underscores the need for a territorially integrated surveillance across scales of this disease-carrying mosquito.
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Fan X, Wang C, Bunker DE. Population Structure of German Cockroaches (Blattodea: Ectobiidae) in an Urban Environment Based on Single Nucleotide Polymorphisms. JOURNAL OF MEDICAL ENTOMOLOGY 2022; 59:1319-1327. [PMID: 35462399 DOI: 10.1093/jme/tjac036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Indexed: 06/14/2023]
Abstract
German cockroaches (Blattella germanica L.) harbor and disperse medically important pathogens and are a source of allergens that impact human health and wellbeing. Management of this pest requires an understanding of their distribution and dispersal. In this study, we collected German cockroaches from three apartment buildings in New Jersey, USA. We identified single-nucleotide polymorphisms (SNPs) from DNA extractions using next generation sequencing. We analyzed the SNPs and characterized cockroach population genetic structure using Fst, principal component, phylogenetic, and STRUCTURE analyses. We found significant differences in German cockroach population structure among the buildings. Within buildings, we found variable population structure that may be evidence for multiple colonization events. This study shows that SNPs derived from next generation sequencing provide a powerful tool for analyzing the genetic population structure of these medically important pests.
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Affiliation(s)
- X Fan
- Department of Biological Sciences, New Jersey Institute of Technology, Newark, NJ, 07102, USA
| | - C Wang
- Department of Entomology, Rutgers, The State University of New Jersey, 96 Lipman Drive, New Brunswick, NJ, 08901, USA
| | - D E Bunker
- Department of Biological Sciences, New Jersey Institute of Technology, Newark, NJ, 07102, USA
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5
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Firsov SY, Kosherova KA, Mukha DV. Identification and functional characterization of the German cockroach, Blattella germanica, short interspersed nuclear elements. PLoS One 2022; 17:e0266699. [PMID: 35696390 PMCID: PMC9191728 DOI: 10.1371/journal.pone.0266699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 03/24/2022] [Indexed: 11/18/2022] Open
Abstract
In recent decades, experimental data has accumulated indicating that short interspersed nuclear elements (SINEs) can play a significant functional role in the regulation of gene expression in the host genome. In addition, molecular markers based on SINE insertion polymorphisms have been developed and are widely used for genetic differentiation of populations of eukaryotic organisms. Using routine bioinformatics analysis and publicly available genomic DNA and small RNA-seq data, we first described nine SINEs in the genome of the German cockroach, Blattella germanica. All described SINEs have tRNA promoters, and the start of their transcription begins 11 bp upstream of an “A” box of these promoters. The number of copies of the described SINEs in the B. germanica genome ranges from several copies to more than a thousand copies in a SINE-specific manner. Some of the described SINEs and their degenerate copies can be localized both in the introns of genes and loci known as piRNA clusters. piRNAs originating from piRNA clusters are shown to be mapped to seven of the nine types of SINEs described, including copies of SINEs localized in gene introns. We speculate that SINEs, localized in the introns of certain genes, may regulate the level of expression of these genes by a PIWI-related molecular mechanism.
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Affiliation(s)
- Sergei Yu. Firsov
- Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia
| | - Karina A. Kosherova
- Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia
| | - Dmitry V. Mukha
- Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia
- * E-mail:
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6
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Dunn RR, Burger JR, Carlen EJ, Koltz AM, Light JE, Martin RA, Munshi-South J, Nichols LM, Vargo EL, Yitbarek S, Zhao Y, Cibrián-Jaramillo A. A Theory of City Biogeography and the Origin of Urban Species. FRONTIERS IN CONSERVATION SCIENCE 2022. [DOI: 10.3389/fcosc.2022.761449] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Many of the choices humans make with regard to infrastructure, urban planning and other phenomena have impacts that will last thousands of years. This can readily be seen in modern cities in which contemporary streets run along street grids that were laid out thousands of years prior or even in which ancient viaducts still play a role. However, rarely do evolutionary biologists explicitly consider the future of life likely to be associated with the decisions we are making today. Here, we consider the evolutionary future of species in cities with a focus on the origin of lineages and species. We do so by adjusting evolutionary predictions from the theory of island biogeography so as to correspond to the unique features of cities as islands. Specifically, the species endemic to cities tend to be associated with the gray habitats in cities. Those habitats tend to be dominated by human bodies, pet bodies and stored food. It is among such species where the origin of new lineages is most likely, although most research on evolution in cities has focused on green habitats. We conclude by considering a range of scenarios for the far future and their implications for the origin of lineages and species.
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7
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Scharf ME, Wolfe ZM, Raje KR, Fardisi M, Thimmapuram J, Bhide K, Gondhalekar AD. Transcriptome Responses to Defined Insecticide Selection Pressures in the German Cockroach (Blattella germanica L.). Front Physiol 2022; 12:816675. [PMID: 35185605 PMCID: PMC8856671 DOI: 10.3389/fphys.2021.816675] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 12/29/2021] [Indexed: 11/29/2022] Open
Abstract
Cockroaches are important global urban pests from aesthetic and health perspectives. Insecticides represent the most cost-effective way to control cockroaches and limit their impacts on human health. However, cockroaches readily develop insecticide resistance, which can quickly limit efficacy of even the newest and most effective insecticide products. The goal of this research was to understand whole-body physiological responses in German cockroaches, at the metatranscriptome level, to defined insecticide selection pressures. We used the insecticide indoxacarb as the selecting insecticide, which is an important bait active ingredient for cockroach control. Six generations of selection with indoxacarb bait produced a strain with substantial (>20×) resistance relative to inbred control lines originating from the same parental stock. Metatranscriptome sequencing revealed 1,123 significantly differentially expressed (DE) genes in ≥two of three statistical models (81 upregulated and 1,042 downregulated; FDR P < 0.001; log2FC of ±1). Upregulated DE genes represented many detoxification enzyme families including cytochrome-P450 oxidative enzymes, hydrolases and glutathione-S-transferases. Interestingly, the majority of downregulated DE genes were from microbial and viral origins, indicating that selection for resistance is also associated with elimination of commensal, pathogenic and/or parasitic microbes. These microbial impacts could result from: (i) direct effects of indoxacarb, (ii) indirect effects of antimicrobial preservatives included in the selecting bait matrix, or (iii) selection for general stress response mechanisms that confer both xenobiotic resistance and immunity. These results provide novel physiological insights into insecticide resistance evolution and mechanisms, as well as novel insights into parallel fitness benefits associated with selection for insecticide resistance.
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Affiliation(s)
- Michael E. Scharf
- Department of Entomology, Purdue University, West Lafayette, IN, United States
- *Correspondence: Michael E. Scharf,
| | - Zachery M. Wolfe
- Department of Entomology, Purdue University, West Lafayette, IN, United States
| | - Kapil R. Raje
- Department of Entomology, Purdue University, West Lafayette, IN, United States
| | - Mahsa Fardisi
- Department of Entomology, Purdue University, West Lafayette, IN, United States
| | - Jyothi Thimmapuram
- Bioinformatics Core, Purdue University, West Lafayette, IN, United States
| | - Ketaki Bhide
- Bioinformatics Core, Purdue University, West Lafayette, IN, United States
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8
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Miles LS, Carlen EJ, Winchell KM, Johnson MTJ. Urban evolution comes into its own: Emerging themes and future directions of a burgeoning field. Evol Appl 2021; 14:3-11. [PMID: 33519952 PMCID: PMC7819569 DOI: 10.1111/eva.13165] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 11/01/2020] [Indexed: 01/02/2023] Open
Abstract
Urbanization has recently emerged as an exciting new direction for evolutionary research founded on our growing understanding of rapid evolution paired with the expansion of novel urban habitats. Urbanization can influence adaptive and nonadaptive evolution in urban-dwelling species, but generalized patterns and the predictability of urban evolutionary responses within populations remain unclear. This editorial introduces the special feature "Evolution in Urban Environments" and addresses four major emerging themes, which include: (a) adaptive evolution and phenotypic plasticity via physiological responses to urban climate, (b) adaptive evolution via phenotype-environment relationships in urban habitats, (c) population connectivity and genetic drift in urban landscapes, and (d) human-wildlife interactions in urban spaces. Here, we present the 16 articles (12 empirical, 3 review, 1 capstone) within this issue and how they represent each of these four emerging themes in urban evolutionary biology. Finally, we discuss how these articles address previous questions and have now raised new ones, highlighting important new directions for the field.
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Affiliation(s)
- Lindsay S. Miles
- Department of BiologyUniversity of Toronto MississaugaMississaugaONCanada
- Centre for Urban EnvironmentsUniversity of Toronto MississaugaMississaugaONCanada
| | | | | | - Marc T. J. Johnson
- Department of BiologyUniversity of Toronto MississaugaMississaugaONCanada
- Centre for Urban EnvironmentsUniversity of Toronto MississaugaMississaugaONCanada
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9
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R2 and Non-Site-Specific R2-Like Retrotransposons of the German Cockroach, Blattella germanica. Genes (Basel) 2020; 11:genes11101202. [PMID: 33076367 PMCID: PMC7650587 DOI: 10.3390/genes11101202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 10/10/2020] [Accepted: 10/12/2020] [Indexed: 11/17/2022] Open
Abstract
The structural and functional organization of the ribosomal RNA gene cluster and the full-length R2 non-LTR retrotransposon (integrated into a specific site of 28S ribosomal RNA genes) of the German cockroach, Blattella germanica, is described. A partial sequence of the R2 retrotransposon of the cockroach Rhyparobia maderae is also analyzed. The analysis of previously published next-generation sequencing data from the B. germanica genome reveals a new type of retrotransposon closely related to R2 retrotransposons but with a random distribution in the genome. Phylogenetic analysis reveals that these newly described retrotransposons form a separate clade. It is shown that proteins corresponding to the open reading frames of newly described retrotransposons exhibit unequal structural domains. Within these retrotransposons, a recombination event is described. New mechanism of transposition activity is discussed. The essential structural features of R2 retrotransposons are conserved in cockroaches and are typical of previously described R2 retrotransposons. However, the investigation of the number and frequency of 5′-truncated R2 retrotransposon insertion variants in eight B. germanica populations suggests recent mobile element activity. It is shown that the pattern of 5′-truncated R2 retrotransposon copies can be an informative molecular genetic marker for revealing genetic distances between insect populations.
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10
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Wan Mohammad WNF, Soh LS, Wan Ismail WN, Veera Singham G. Infestation Pattern and Population Dynamics of the Tropical Bed Bug, Cimex hemipterus (F.) (Hemiptera: Cimicidae) Based on Novel Microsatellites and mtDNA Markers. INSECTS 2020; 11:insects11080472. [PMID: 32722487 PMCID: PMC7469168 DOI: 10.3390/insects11080472] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 07/19/2020] [Accepted: 07/23/2020] [Indexed: 12/03/2022]
Abstract
The tropical bed bug, Cimex hemipterus (F.), has now emerged as an important public health pest in the tropics. Despite its alarming infestation rate, the information on its population genetics remains scarce. Here, we described the infestation structure and population dynamics of C. hemipterus in the tropics, especially Malaysia and Singapore, based on eight novel microsatellites and two mtDNA markers, including cytochrome c oxidase I (COI) and 16S rRNA genes. Across populations, microsatellite data revealed high genetic diversity with significant genetic differentiation and restricted gene flow. Analysis within populations revealed evidence of a recent bottleneck. Nonetheless, elevated genetic diversity in nearly all populations suggests that the propagule in C. hemipterus populations were much diverse, distantly related (mean r = 0.373), and not significantly inbred (mean FIS = 0.24) than that observed in Cimex lectularius from previous studies. We observed seven mtDNA haplotypes across the 18 populations studied (Hd = 0.593) and several populations displayed more than one matrilineal descent. The two markers were generally congruent in suggesting a common, genetically diverse (especially at the nuclear region) source population with possibilities of multiple introductions for the bed bug populations in the present study.
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Affiliation(s)
- Wan Nur Fatanah Wan Mohammad
- Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas 11900, Penang, Malaysia; (W.N.F.W.M.); (L.-S.S.)
| | - Li-Shen Soh
- Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas 11900, Penang, Malaysia; (W.N.F.W.M.); (L.-S.S.)
| | - Wan Nurainie Wan Ismail
- Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, Kota Samarahan 94300, Sarawak, Malaysia;
| | - G. Veera Singham
- Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas 11900, Penang, Malaysia; (W.N.F.W.M.); (L.-S.S.)
- Correspondence:
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11
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Reed EMX, Serr ME, Maurer AS, Burford Reiskind MO. Gridlock and beltways: the genetic context of urban invasions. Oecologia 2020; 192:615-628. [PMID: 32056021 DOI: 10.1007/s00442-020-04614-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 01/30/2020] [Indexed: 01/16/2023]
Abstract
The rapid expansion of urban land across the globe presents new and numerous opportunities for invasive species to spread and flourish. Ecologists historically rejected urban ecosystems as important environments for ecology and evolution research but are beginning to recognize the importance of these systems in shaping the biology of invasion. Urbanization can aid the introduction, establishment, and spread of invaders, and these processes have substantial consequences on native species and ecosystems. Therefore, it is valuable to understand how urban areas influence populations at all stages in the invasion process. Population genetic tools are essential to explore the driving forces of invasive species dispersal, connectivity, and adaptation within cities. In this review, we synthesize current research about the influence of urban landscapes on invasion genetics dynamics. We conclude that urban areas are not only points of entry for many invasive species, they also facilitate population establishment, are pools for genetic diversity, and provide corridors for further spread both within and out of cities. We recommend the continued use of genetic studies to inform invasive species management and to understand the underlying ecological and evolutionary processes governing successful invasion.
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Affiliation(s)
- E M X Reed
- Department of Biological Sciences, North Carolina State University, Raleigh, NC, 27695, USA.
| | - M E Serr
- Department of Biological Sciences, North Carolina State University, Raleigh, NC, 27695, USA
| | - A S Maurer
- Department of Biological Sciences, North Carolina State University, Raleigh, NC, 27695, USA
| | - M O Burford Reiskind
- Department of Biological Sciences, North Carolina State University, Raleigh, NC, 27695, USA
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12
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Ovarian Transcriptomic Analyses in the Urban Human Health Pest, the Western Black Widow Spider. Genes (Basel) 2020; 11:genes11010087. [PMID: 31940922 PMCID: PMC7017306 DOI: 10.3390/genes11010087] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 12/06/2019] [Accepted: 01/07/2020] [Indexed: 11/23/2022] Open
Abstract
Due to their abundance and ability to invade diverse environments, many arthropods have become pests of economic and health concern, especially in urban areas. Transcriptomic analyses of arthropod ovaries have provided insight into life history variation and fecundity, yet there are few studies in spiders despite their diversity within arthropods. Here, we generated a de novo ovarian transcriptome from 10 individuals of the western black widow spider (Latrodectus hesperus), a human health pest of high abundance in urban areas, to conduct comparative ovarian transcriptomic analyses. Biological processes enriched for metabolism—specifically purine, and thiamine metabolic pathways linked to oocyte development—were significantly abundant in L. hesperus. Functional and pathway annotations revealed overlap among diverse arachnid ovarian transcriptomes for highly-conserved genes and those linked to fecundity, such as oocyte maturation in vitellogenin and vitelline membrane outer layer proteins, hormones, and hormone receptors required for ovary development, and regulation of fertility-related genes. Comparative studies across arachnids are greatly needed to understand the evolutionary similarities of the spider ovary, and here, the identification of ovarian proteins in L. hesperus provides potential for understanding how increased fecundity is linked to the success of this urban pest.
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13
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Ma J, Liu J, Shen Y, Fan Z, Yue B, Zhang X. Population genetic structure and intraspecific genetic distance of Periplaneta americana (Blattodea: Blattidae) based on mitochondrial and nuclear DNA markers. Ecol Evol 2019; 9:12928-12939. [PMID: 31788226 PMCID: PMC6876684 DOI: 10.1002/ece3.5777] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Revised: 10/01/2019] [Accepted: 10/02/2019] [Indexed: 11/06/2022] Open
Abstract
The American cockroach (Periplaneta americana) is a globally invasive pest that can cause significant economic loss and threaten human health. Although it is abundant and lives in close proximity to humans, few studies have investigated the genetic diversity of P. americana. Our study analyzed 1,053 P. americana and other Periplaneta species' samples from different locations in China and the United States. A traditional tree-based method using 17 unique mitochondrial COI haplotypes of P. americana and 20 haplotypes of the other Periplaneta species accurately identified P. americana with a barcoding threshold of 5.1%. To identify the population genetic structure of P. americana, we investigated wingless gene and pooled them with obtained mtDNA data for a combined analysis. Although the genetic diversity of the USA group was relatively higher than the China group, the number of haplotypes and alleles of both groups was small. The analysis of molecular variance (AMOVA), intraspecific phylogeny, and haplotype networks indicated that P. americana had very little global genetic differentiation. The weak geographic genetic structure might reflect the human-mediated dispersal of P. americana. Despite no apparent phylogeographic assignment of mtDNA and nuclear lineages was observed in both BI trees, the integrated COI sequence data identified four distinct P. americana haplotype groups, showing four ancient maternal lineages of P. americana in China and the United States.
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Affiliation(s)
- Jinnan Ma
- Key Laboratory of Bio‐resources and Eco‐environmentMinistry of EducationCollege of Life SciencesSichuan UniversityChengduChina
| | - Jinhua Liu
- Sichuan Key Laboratory of Conservation Biology on Endangered WildlifeCollege of Life SciencesSichuan UniversityChengduChina
| | - Yongmei Shen
- Sichuan Key Laboratory of Medicinal American CockroachSichuan Gooddoctor Pharmaceutical GroupChengduChina
| | - Zhenxin Fan
- Key Laboratory of Bio‐resources and Eco‐environmentMinistry of EducationCollege of Life SciencesSichuan UniversityChengduChina
- Sichuan Key Laboratory of Conservation Biology on Endangered WildlifeCollege of Life SciencesSichuan UniversityChengduChina
| | - Bisong Yue
- Key Laboratory of Bio‐resources and Eco‐environmentMinistry of EducationCollege of Life SciencesSichuan UniversityChengduChina
- Sichuan Key Laboratory of Conservation Biology on Endangered WildlifeCollege of Life SciencesSichuan UniversityChengduChina
| | - Xiuyue Zhang
- Key Laboratory of Bio‐resources and Eco‐environmentMinistry of EducationCollege of Life SciencesSichuan UniversityChengduChina
- Sichuan Key Laboratory of Conservation Biology on Endangered WildlifeCollege of Life SciencesSichuan UniversityChengduChina
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14
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Wei P, Xie X, Wang R, Zhang J, Li F, Luo Z, Wang Z, Wu M, Yang J, Cao P. Genetic Diversity of Blattella germanica Isolates from Central China based on Mitochondrial Genes. Curr Bioinform 2019. [DOI: 10.2174/1574893614666190204153041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
Blattella germanica is a widespread urban invader insect that can spread
numerous types of human pathogens, including bacteria, fungi, and protozoa. Despite the medical
significance of B. germanica, the genetic diversity of this species has not been investigated across
its wide geographical distribution in China.
Objective:
In this study, the genetic variation of B. germanica was evaluated in central China.
Methods:
Fragments of the mitochondrial cytochrome c oxidase subunit I (COI) gene and the 16S
rRNA gene were amplified in 36 B. germanica isolates from 7 regions. The sequence data for COI
and 16S rRNA genes were analyzed using bioinformatics methods.
Results:
In total, 13 haplotypes were found among the concatenated sequences. Each sampled
population, and the total population, had high haplotype diversity (Hd) that was accompanied by
low nucleotide diversity (Pi). Molecular genetic variation analysis indicated that 84.33% of the genetic
variation derived from intra-region sequences. Phylogenetic analysis indicated that the B.
germanica isolates from central China should be classified as a single population. Demographic
analysis rejected the hypothesis of sudden population expansion of the B. germanica population.
Conclusion:
The 36 isolates of B. germanica sampled in this study had high genetic variation and
belonged to the same species. They should be classified as a single population. The mismatch distribution
analysis and BSP analysis did not support a demographic population expansion of the B.
germanica population, which provided useful knowledge for monitoring changes in parasite populations
for future control strategies.
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Affiliation(s)
- Pan Wei
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - XiaoDong Xie
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - Ran Wang
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - JianFeng Zhang
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - Feng Li
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - ZhaoPeng Luo
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - Zhong Wang
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - MingZhu Wu
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - Jun Yang
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
| | - PeiJian Cao
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China
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15
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Tseng SP, Wetterer JK, Suarez AV, Lee CY, Yoshimura T, Shoemaker D, Yang CCS. Genetic Diversity and Wolbachia Infection Patterns in a Globally Distributed Invasive Ant. Front Genet 2019; 10:838. [PMID: 31608104 PMCID: PMC6758599 DOI: 10.3389/fgene.2019.00838] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Accepted: 08/13/2019] [Indexed: 11/23/2022] Open
Abstract
Understanding the phylogeographic history of an invasive species may facilitate reconstructing the history and routes of its invasion. The longhorn crazy ant, Paratrechina longicornis, is a ubiquitous agricultural and household pest throughout much of the tropics and subtropics, but little is known about the history of its spread. Here, we examine worldwide genetic variation in P. longicornis and its associated Wolbachia bacterial symbionts. Analyses of mtDNA sequences of 248 P. longicornis workers (one per colony) from 13 geographic regions reveal two highly diverged mtDNA clades that co-occur in most of the geographic regions. These two mtDNA clades are associated with different Wolbachia infection patterns, but are not congruent with patterns of nDNA (microsatellite) variation. Multilocus sequence typing reveals two distinct Wolbachia strains in P. longicornis, namely, wLonA and wLonF. The evolutionary histories of these two strains differ; wLonA appears to be primarily transmitted maternally, and patterns of mtDNA and nDNA variation and wLonA infection status are consistent with a relatively recent Wolbachia-induced selective sweep. In contrast, the observed patterns of mtDNA variation and wLonF infections suggest frequent horizontal transfer and losses of wLonF infections. The lack of nDNA structure among sampled geographic regions coupled with the finding that numerous mtDNA haplotypes are shared among regions implies that inadvertent long-distance movement through human commerce is common in P. longicornis and has shaped the genetic structure of this invasive ant worldwide.
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Affiliation(s)
- Shu-Ping Tseng
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - James K Wetterer
- Wilkes Honors College, Florida Atlantic University, Jupiter, FL, United States
| | - Andrew V Suarez
- Department of Evolution, Ecology and Behavior and Department of Entomology, University of Illinois Urbana-Champaign, IL, United States
| | - Chow-Yang Lee
- Department of Entomology, University of California, Riverside, CA, United States
| | - Tsuyoshi Yoshimura
- Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, Japan
| | - DeWayne Shoemaker
- Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, United States
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16
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Fardisi M, Gondhalekar AD, Ashbrook AR, Scharf ME. Rapid evolutionary responses to insecticide resistance management interventions by the German cockroach (Blattella germanica L.). Sci Rep 2019; 9:8292. [PMID: 31165746 PMCID: PMC6549143 DOI: 10.1038/s41598-019-44296-y] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 05/14/2019] [Indexed: 11/12/2022] Open
Abstract
The German cockroach (Blattella germanica L.) is a worldwide pest that lives exclusively in human environments. B. germanica threatens human health by producing asthma-triggering allergens, vectoring pathogenic/antibiotic-resistant microbes, and by contributing to unhealthy indoor environments. While insecticides are essential for reducing cockroach populations and improving health outcomes, insecticide resistance has been a consistent barrier to cockroach control since the 1950s. We conducted seminal field studies to compare three insecticide resistance intervention strategies for cockroaches and evaluated resistance evolution across multiple generations. Using pre-treatment resistance assessment to drive decisions, we found that single active ingredient (AI) treatments can successfully eliminate cockroaches if starting resistance levels are low. We further established that rotation treatments intuitively reduce selection pressure, and are effective when insecticides with no/low resistance are used. We also found that mixture products containing thiamethoxam + λ-cyhalothrin AIs were universally ineffective and highly repellent; and finally, evolution of cross-resistance among AIs is a significant, previously unrealized challenge.
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Affiliation(s)
- Mahsa Fardisi
- Purdue University, Department of Entomology, West Lafayette, IN, 47907, USA
| | | | - Aaron R Ashbrook
- Purdue University, Department of Entomology, West Lafayette, IN, 47907, USA
| | - Michael E Scharf
- Purdue University, Department of Entomology, West Lafayette, IN, 47907, USA.
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17
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Rivkin LR, Santangelo JS, Alberti M, Aronson MFJ, de Keyzer CW, Diamond SE, Fortin M, Frazee LJ, Gorton AJ, Hendry AP, Liu Y, Losos JB, MacIvor JS, Martin RA, McDonnell MJ, Miles LS, Munshi‐South J, Ness RW, Newman AEM, Stothart MR, Theodorou P, Thompson KA, Verrelli BC, Whitehead A, Winchell KM, Johnson MTJ. A roadmap for urban evolutionary ecology. Evol Appl 2019; 12:384-398. [PMID: 30828362 PMCID: PMC6383741 DOI: 10.1111/eva.12734] [Citation(s) in RCA: 111] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 10/29/2018] [Accepted: 11/05/2018] [Indexed: 12/13/2022] Open
Abstract
Urban ecosystems are rapidly expanding throughout the world, but how urban growth affects the evolutionary ecology of species living in urban areas remains largely unknown. Urban ecology has advanced our understanding of how the development of cities and towns change environmental conditions and alter ecological processes and patterns. However, despite decades of research in urban ecology, the extent to which urbanization influences evolutionary and eco-evolutionary change has received little attention. The nascent field of urban evolutionary ecology seeks to understand how urbanization affects the evolution of populations, and how those evolutionary changes in turn influence the ecological dynamics of populations, communities, and ecosystems. Following a brief history of this emerging field, this Perspective article provides a research agenda and roadmap for future research aimed at advancing our understanding of the interplay between ecology and evolution of urban-dwelling organisms. We identify six key questions that, if addressed, would significantly increase our understanding of how urbanization influences evolutionary processes. These questions consider how urbanization affects nonadaptive evolution, natural selection, and convergent evolution, in addition to the role of urban environmental heterogeneity on species evolution, and the roles of phenotypic plasticity versus adaptation on species' abundance in cities. Our final question examines the impact of urbanization on evolutionary diversification. For each of these six questions, we suggest avenues for future research that will help advance the field of urban evolutionary ecology. Lastly, we highlight the importance of integrating urban evolutionary ecology into urban planning, conservation practice, pest management, and public engagement.
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18
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Tang Q, Bourguignon T, Willenmse L, De Coninck E, Evans T. Global spread of the German cockroach, Blattella germanica. Biol Invasions 2018. [DOI: 10.1007/s10530-018-1865-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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19
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Miles LS, Dyer RJ, Verrelli BC. Urban hubs of connectivity: contrasting patterns of gene flow within and among cities in the western black widow spider. Proc Biol Sci 2018; 285:rspb.2018.1224. [PMID: 30068686 DOI: 10.1098/rspb.2018.1224] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Accepted: 07/10/2018] [Indexed: 12/20/2022] Open
Abstract
As urbanization drastically alters the natural landscape and generates novel habitats within cities, the potential for changes to gene flow for urban-dwelling species increases. The western black widow spider (Latrodectus hesperus) is a medically relevant urban adapter pest species, for which we have previously identified population genetic signatures consistent with urbanization facilitating gene flow, likely due to human-mediated transport. Here, in an analysis of 1.9 million genome-wide SNPs, we contrast broad-scale geographical analyses of 10 urban and 11 non-urban locales with fine-scale within-city analyses including 30 urban locales across the western USA. These hierarchical datasets enable us to test hypotheses of how urbanization impacts multiple urban cities and their genetic connectivity at different spatial scales. Coupled fine-scale and broad-scale analyses reveal contrasting patterns of high and low genetic differentiation among locales within cities as a result of low and high genetic connectivity, respectively, of these cities to the overall population network. We discuss these results as they challenge the use of cities as replicates of urban eco-evolution, and have implications for conservation and human health in a rapidly growing urban habitat.
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Affiliation(s)
- Lindsay S Miles
- Center for Life Sciences Education, Virginia Commonwealth University, Richmond, VA, USA.,Integrative Life Sciences Doctoral Program, Virginia Commonwealth University, Richmond, VA, USA
| | - Rodney J Dyer
- Center for Environmental Studies, Virginia Commonwealth University, Richmond, VA, USA
| | - Brian C Verrelli
- Center for Life Sciences Education, Virginia Commonwealth University, Richmond, VA, USA .,Department of Biology, Virginia Commonwealth University, Richmond, VA, USA
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20
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Miles LS, Johnson JC, Dyer RJ, Verrelli BC. Urbanization as a facilitator of gene flow in a human health pest. Mol Ecol 2018; 27:3219-3230. [PMID: 29972610 DOI: 10.1111/mec.14783] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Revised: 03/16/2018] [Accepted: 04/11/2018] [Indexed: 01/04/2023]
Abstract
Urban fragmentation can reduce gene flow that isolates populations, reduces genetic diversity and increases population differentiation, all of which have negative conservation implications. Alternatively, gene flow may actually be increased among urban areas consistent with an urban facilitation model. In fact, urban adapter pests are able to thrive in the urban environment and may be experiencing human-mediated transport. Here, we used social network theory with a population genetic approach to investigate the impact of urbanization on genetic connectivity in the Western black widow spider, as an urban pest model of human health concern. We collected genomewide single nucleotide polymorphism variation from mitochondrial and nuclear double-digest RAD (ddRAD) sequence data sets from 210 individuals sampled from 11 urban and 10 nonurban locales across its distribution of the Western United States. From urban and nonurban contrasts of population, phylogenetic, and network analyses, urban locales have higher within-population genetic diversity, lower between-population genetic differentiation and higher estimates of genetic connectivity. Social network analyses show that urban locales not only have more connections, but can act as hubs that drive connectivity among nonurban locales, which show signatures of historical isolation. These results are consistent with an urban facilitation model of gene flow and demonstrate the importance of sampling multiple cities and markers to identify the role that urbanization has had on larger spatial scales. As the urban landscape continues to grow, this approach will help determine what factors influence the spread and adaptation of pests, like the venomous black widow spider, in building policies for human and biodiversity health.
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Affiliation(s)
- Lindsay S Miles
- Center for Life Sciences Education, Virginia Commonwealth University, Richmond, Virginia
- Integrative Life Sciences Doctoral Program, Virginia Commonwealth University, Richmond, Virginia
| | - J Chadwick Johnson
- Division of Mathematical and Natural Sciences, Arizona State University at the West Campus, Glendale, Arizona
| | - Rodney J Dyer
- Center for Environmental Studies, Virginia Commonwealth University, Richmond, Virginia
| | - Brian C Verrelli
- Center for Life Sciences Education, Virginia Commonwealth University, Richmond, Virginia
- Department of Biology, Virginia Commonwealth University, Richmond, Virginia
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21
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Abstract
Our planet is an increasingly urbanized landscape, with over half of the human population residing in cities. Despite advances in urban ecology, we do not adequately understand how urbanization affects the evolution of organisms, nor how this evolution may affect ecosystems and human health. Here, we review evidence for the effects of urbanization on the evolution of microbes, plants, and animals that inhabit cities. Urbanization affects adaptive and nonadaptive evolutionary processes that shape the genetic diversity within and between populations. Rapid adaptation has facilitated the success of some native species in urban areas, but it has also allowed human pests and disease to spread more rapidly. The nascent field of urban evolution brings together efforts to understand evolution in response to environmental change while developing new hypotheses concerning adaptation to urban infrastructure and human socioeconomic activity. The next generation of research on urban evolution will provide critical insight into the importance of evolution for sustainable interactions between humans and our city environments.
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Affiliation(s)
- Marc T J Johnson
- Department of Biology and Center for Urban Environments, University of Toronto Mississauga, Mississauga, Ontario, Canada. .,Department of Ecology and Evolutionary Biology, University of Toronto Mississauga, Mississauga, Ontario, Canada
| | - Jason Munshi-South
- Department of Biological Sciences and Louis Calder Center, Fordham University, Armonk, NY, USA.
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22
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Lihoreau M, Rivault C, van Zweden JS. Kin discrimination increases with odor distance in the German cockroach. Behav Ecol 2016. [DOI: 10.1093/beheco/arw099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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23
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Tang Q, Jiang H, Li Y, Bourguignon T, Evans TA. Population structure of the German cockroach, Blattella germanica, shows two expansions across China. Biol Invasions 2016. [DOI: 10.1007/s10530-016-1170-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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24
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Spatial genetic structure and restricted gene flow in bed bugs (Cimex lectularius) populations in France. INFECTION GENETICS AND EVOLUTION 2015; 34:236-43. [PMID: 26140960 DOI: 10.1016/j.meegid.2015.06.028] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Revised: 06/26/2015] [Accepted: 06/29/2015] [Indexed: 11/22/2022]
Abstract
Bed bugs (Cimex lectularius) are resurgent blood-sucking ectoparasites that are currently increasing at a rapid rate, particularly in industrialized countries, such as France. Despite the rapid spread of bed bugs, there is a lack of knowledge concerning the population structure and gene flow among C. lectularius populations in France. To fill this gap, a genetic study was conducted using 183 C. lectularius from 14 populations of bed bugs collected in a hotel and in individual apartments in the French Riviera and in the Saint Ouen suburb of Paris. The samples were genotyped using an isolated set of six polymorphic microsatellite loci, including five new loci which were newly isolated and chosen based on prior successful amplification, and one previously described loci (bb15b). The low genetic diversity observed in the samples (of one to five alleles) suggested that most of prospected populations were established by only a few individuals, possibly from a single mated female. The overall genetic differentiation was high and statistically significant (FST=0.556, p<0.0001). Pairwise analysis of the populations indicated significant genetic differentiation for 24 out of the 45 (53%) population pairs associated with FST, ranging from 0.0042 to 0.862. No obvious relationship between the level of genetic differentiation and the geographic distance was observed when considering all samples. Analysis with Structure software identified nine distinct genetic clusters within the dataset. These preliminary results help to elucidate the genetic structure and gene flow of C. lectularius populations in France; however, the available information should be expanded in further studies.
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