Frugivorous bats maintain functional habitat connectivity in agricultural landscapes but rely strongly on natural forest fragments

Ecological countermeasures to prevent pathogen spillover and subsequent pandemics

Substantial global attention is focused on how to reduce the risk of future pandemics. Reducing this risk requires investment in prevention, preparedness, and response. Although preparedness and response have received significant focus, prevention, especially the prevention of zoonotic spillover, remains largely absent from global conversations. This oversight is due in part to the lack of a clear definition of prevention and lack of guidance on how to achieve it. To address this gap, we elucidate the mechanisms linking environmental change and zoonotic spillover using spillover of viruses from bats as a case study. We identify ecological interventions that can disrupt these spillover mechanisms and propose policy frameworks for their implementation. Recognizing that pandemics originate in ecological systems, we advocate for integrating ecological approaches alongside biomedical approaches in a comprehensive and balanced pandemic prevention strategy.

Molecular characterization of non-aureus staphylococci and Mammaliicoccus from Hipposideros bats in Southwest Nigeria

Bats are not only ecologically valuable mammals but also reservoirs of zoonotic pathogens. Their vast population, ability to fly, and inhabit diverse ecological niches could play some role in the spread of antibiotic resistance. This study investigated non-aureus staphylococci and Mammaliicoccus colonization in the Hipposideros bats at Obafemi Awolowo University, Ile-Ife, Nigeria. Pharyngeal samples (n = 23) of the insectivorous bats were analyzed, and the presumptive non-aureus staphylococcal and Mammaliicoccus isolates were confirmed by matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS). The isolates were characterized based on antibiotic susceptibility testing and whole-genome sequencing (WGS). Six bacterial genomes were assembled, and three species were identified, including Mammaliicoccus sciuri (n = 4), Staphylococcus gallinarum (n = 1), and Staphylococcus nepalensis (n = 1). All the isolates were resistant to clindamycin, while the M. sciuri and S. gallinarum isolates were also resistant to fusidic acid. WGS analysis revealed that the M. sciuri and S. gallinarum isolates were mecA-positive. In addition, the M. sciuri isolates possessed some virulence (icaA, icaB, icaC, and sspA) genes. Multi-locus sequence typing identified two new M. sciuri sequence types (STs) 233 and ST234. The identification of these new STs in a migratory mammal deserves close monitoring because previously known ST57, ST60, and ST65 sharing ack (8), ftsZ (13), glpK (14), gmk (6), and tpiA (10) alleles with ST233 and ST234 have been linked to mastitis in animals. Moreover, the broad host range of M. sciuri could facilitate the dispersal of antibiotic resistance genes. This study provides evidence of the importance of including migratory animals in monitoring the development and spread of antibiotic resistance.

A global systematic review of frugivorous animal tracking studies and the estimation of seed dispersal distances

Seed dispersal is one of the most important ecosystem functions globally. It shapes plant populations, enhances forest succession, and has multiple, indirect benefits for humans, yet it is one of the most threatened processes in plant regeneration, worldwide. Seed dispersal distances are determined by the diets, seed retention times and movements of frugivorous animals. Hence, understanding how we can most effectively describe frugivore movement and behaviour with rapidly developing animal tracking technology is key to quantifying seed dispersal. To assess the current use of animal tracking in frugivory studies and to provide a baseline for future studies, we provide a comprehensive review and synthesis on the existing primary literature of global tracking studies that monitor movement of frugivorous animals. Specifically, we identify studies that estimate dispersal distances and how they vary with body mass and environmental traits. We show that over the last two decades there has been a large increase in frugivore tracking studies that determine seed dispersal distances. However, some taxa (e.g. reptiles) and geographic locations (e.g. Africa and Central Asia) are poorly studied. Furthermore, we found that certain morphological and environmental traits can be used to predict seed dispersal distances. We demonstrate that flight ability and increased body mass both significantly increase estimated seed dispersal mean and maximum distances. Our results also suggest that protected areas have a positive effect on mean seed dispersal distances when compared to unprotected areas. We anticipate that this review will act as a reference for future frugivore tracking studies, specifically to target current taxonomic and geographic data gaps, and to further explore how seed dispersal relates to key frugivore and fruit traits.

Spatiotemporal trends in floral visitation and interaction networks reveal shifting niches for bats in a Neotropical savanna

Flower-vising bats are important components of tropical pollinator communities, yet little is known about the structure of their pollination networks and how resource availability through time (seasons) and space (habitat heterogeneity) affects the extent to which bats interact with plants within a community-wide context. This information is key for the conservation of threatened nectarivore species, such as the Cerrado-endemic Lonchophylla dekeyseri, for which data on its specialization on floral-resources is scarce. Within a seasonal and heterogeneous savanna in the central Brazilian Cerrado, we performed a year-round assessment of an inclusive assemblage of flower-visiting bats (both nectarivores and other guilds that can also feed on nectar) within a savanna-edge-forest gradient, the phenological trends and spatial distribution of bat and their resource plants, and the resultant temporal and spatial interaction networks between bats and plants in order to associate network structure to resource availability. Clear spatiotemporal trends emerged in the community. Nectarivores dominated the flower-visiting niche outside forests and were prolific floral visitors, resulting in networks with lower specialization and modularity. These bats diverged into savanna foragers active during the wet season and the wet-dry transition, and edge foragers active mostly during the dry season. The latter group encompassed L. dekeyseri, which visited mostly Bauhinia species. Frugivores took over as main floral visitors within forests, as well as during peak dry season, when fewer fruits were available, resulting in more specialized and modular networks. Our work shows that the turnover of floral resources across seasons and vegetation types has a defining role in bat-plant interactions and relates to network structure, as bat trophic guilds interact with plants in distinct habitats and times of the year. Frugivores dominate the flower-visiting niche in certain temporal and spatial subsets of the network, which calls for the inclusion of this guild in future studies. Moreover, the high visitation to Bauhinia species by L. dekeyseri during the dry season might reduce competition with other nectarivores and is relevant to the management of the species, although more data is needed on its resource consumption on a larger time frame and across its geographic range.

Emerging viruses: Cross-species transmission of coronaviruses, filoviruses, henipaviruses, and rotaviruses from bats

Emerging infectious diseases, especially if caused by bat-borne viruses, significantly affect public health and the global economy. There is an urgent need to understand the mechanism of interspecies transmission, particularly to humans. Viral genetics; host factors, including polymorphisms in the receptors; and ecological, environmental, and population dynamics are major parameters to consider. Here, we describe the taxonomy, geographic distribution, and unique traits of bats associated with their importance as virus reservoirs. Then, we summarize the origin, intermediate hosts, and the current understanding of interspecies transmission of Middle East respiratory syndrome coronavirus (MERS-CoV), severe acute respiratory syndrome coronavirus (SARS-CoV), SARS-CoV-2, Nipah, Hendra, Ebola, Marburg virus, and rotaviruses. Finally, the molecular interactions of viral surface proteins with host cell receptors are examined, and a comparison of these interactions in humans, intermediate hosts, and bats is conducted. This uncovers adaptive mutations in virus spike protein that facilitate cross-species transmission and risk factors associated with the emergence of novel viruses from bats.

Uniting niche differentiation and dispersal limitation predicts tropical forest succession

Tropical secondary forests are increasingly important for carbon sequestration and biodiversity conservation worldwide; yet, we still cannot accurately predict community turnover during secondary succession. We propose that integrating niche differentiation and dispersal limitation will generate an improved theoretical explanation of tropical forest succession. The interaction between seed sources and dispersers regulates seed movement throughout succession, and recent technological advances in animal tracking and molecular analyses enable us to accurately monitor seed movement as never before. We propose a framework to bridge the gap between niche differentiation and dispersal limitation. The Source-Disperser Limitation Framework (SDLF) provides a way to better predict secondary tropical forest succession across gradients of landscape disturbance by integrating seed sources and frugivore behavior.

DNA diet profiles with high-resolution animal tracking data reveal levels of prey selection relative to habitat choice in a crepuscular insectivorous bird

Given the global decline of many invertebrate food resources, it is fundamental to understand the dietary requirements of insectivores. We give new insights into the functional relationship between the spatial habitat use, food availability, and diet of a crepuscular aerial insectivore, the European Nightjar (Caprimulgus europaeus) by relating spatial use data with high-throughput sequencing (HTS) combined with DNA metabarcoding. Our study supports the predictions that nightjars collect a substantial part of their daily nourishment from foraging locations, sometimes at considerable distance from nesting sites. Lepidopterans comprise 65% of nightjars' food source. Nightjars tend to select larger species of Lepidoptera (>19 mm) which suggests that nightjars optimize the efficiency of foraging trips by selecting the most energetically favorable-larger-prey items. We anticipate that our findings may shed additional light on the interactions between invertebrate communities and higher trophic levels, which is required to understand the repercussions of changing food resources on individual- and population-level processes.

Influence of food availability, plant productivity, and indigenous forest use on ranging behavior of the endangered samango monkey (Cercopithecus albogularis schwarzi), in the Soutpansberg Mountains, South Africa

Understanding the determinants of ranging patterns in species susceptible to habitat fragmentation is fundamental for assessing their long-term adaptability to an increasingly human-dominated landscape. The aim of this study was to determine and compare the influence of ground-based food availability, remotely sensed plant productivity, and indigenous forest use on the ranging patterns of the endangered samango monkey (Cercopithecus albogularis schwarzi). We collected monthly ranging data on two habituated samango monkey groups, from February 2012 to December 2016, from our field site in the Soutpansberg Mountains, South Africa. We used linear mixed models to explore how food availability, plant productivity, and indigenous forest use influenced monthly ranging patterns, while controlling for group size, number of sample days and day length. We found that as more areas of high plant productivity (derived from remotely sensed EVI) were incorporated into the ranging area, both total and core monthly ranging areas decreased. In addition, both total ranging area and mean monthly daily path length decreased as more indigenous forest was incorporated into the ranging area. However, we found no effect of either ground-based food availability or remotely sensed plant productivity on ranging patterns. Our findings demonstrate the behavioral flexibility in samango monkey ranging, as samangos can utilize matrix habitat during periods of low productivity but are ultimately dependent on access to indigenous forest patches. In addition, we highlight the potential of using remotely sensed areas of high plant productivity to predict ranging patterns in a small ranging, forest-dwelling guenon, over ground-based estimates of food availability.

Timing of emergence and cave return, and duration of nocturnal activity in an endemic Malagasy fruit bat

Bats emerge from their day roost after dusk and different factors can affect the timing of departure, return, and duration of nocturnal activities. This study provides information on the time of emergence and return of an endemic Malagasy fruit bat, Rousettus madagascariensis, in a cave located in the Réserve Spéciale d’Ankarana, northern Madagascar. Individuals were captured in a narrow passage between the roost and cave exit and capture time for each individual was noted. Variation according to sex, age, and body condition, as well as the influence of season, and the sunset and sunrise time were analyzed. During the dry season, individuals started to emerge at 1913 hours and returned to the cave generally by 0505 hours; the duration of time outside the cave during the dry season was higher in adult females (0952 hours) followed by subadult males (0937 hours), sub-adult females (0931 hours), and adult males (0910 hours). During the wet season, individuals exited at 1926 hours and returned at 0351 hours; as in the dry season, adult females spent more time outside the cave (0833 hours), than sub-adult females (0800 hours), and adult males (0752 hours). The period of emergence varied according to the age and sex classes, and time of predawn return associated with the previous nocturnal activity. The period of return was influenced by season, and age and sex classes. Such information is useful to quantify shifts in bat ecology, especially for endemic species with limited distribution or those playing an important role in ecosystem services.

An escape theory model for directionally moving prey and an experimental test in juvenile Chinook salmon

Prey evaluate risk and make decisions based on the balance between the costs of predation and those of engaging in antipredator behaviour. Economic escape theory has been valuable in understanding the responses of stationary prey under predation risk; however, current models are not applicable for directionally moving prey.

Here we present an extension of existing escape theory that predicts how much predation risk is perceived by directionally moving prey. Perceived risk is measured by the extent antipredator behaviour causes a change in travel speed (the distance to a destination divided by the total time to reach that destination). Cryptic or cautious antipredator behaviour slows travel speed, while prey may also speed up to reduce predator–prey overlap. Next, we applied the sensitization hypothesis to our model, which predicts that prey with more predator experience should engage in more antipredator behaviour, which leads to a larger change in travel speed under predation risk. We then compared the qualitative predictions of our model to the results of a behavioural assay with juvenile Chinook salmon Oncorhynchus tshawytscha that varied in their past predator experience.

We timed salmon swimming downstream through a mesh enclosure in the river with and without predator cues present to measure their reaction to a predator. Hatchery salmon had the least predator experience, followed by wild salmon captured upstream (wild‐upstream) and wild‐salmon captured downstream (wild‐downstream).

Both wild salmon groups slowed down in response to predator cues, whereas hatchery salmon did not change travel speed. The magnitude of reaction to predator cues by salmon group followed the gradient of previous predator experience, supporting the sensitization hypothesis.

Moving animals are conspicuous and vulnerable to predators. Here we provide a novel conceptual framework for understanding how directionally moving prey perceive risk and make antipredator decisions. Our study extends the scope of economic escape theory and improves general understanding of non‐lethal effects of predators on moving prey.

Anatomical features of the tongue of two chiropterans endemic in the Egyptian fauna; the Egyptian fruit bat (Rousettus aegyptiacus) and insectivorous bat (Pipistrellus kuhlii)

The current study aimed to investigate the tongue (lingual) morphometry, histology, and histochemistry of two chiropterans endemic in the Egyptian fauna, and having different feeding preferences. The tongues of nine adult individuals of each species were utilized in our investigation. The tongue of fruit-eating bat was observed relatively longer than the one of insect-eating bat. Grossly, the insect-eating bat had a lingual prominence on the dorsum of lingual body, while the fruit-eating bat had a concave midline over the lingual body. Histologically, numerous forms of lingual papillae were scattered along the dorsal epithelium of the tongue. The lingual papillae of the fruit-eating bat seem to be well adapted for piercing the skin of a fruit and liquid sap retention. The lingual glands of both species were lodged in the muscular layer. Two main sets were identified; the serous von Ebner's gland usually seen accompanied by the circumvallate papillae and Weber's gland with mixed mucoserous secretions. Von Ebner's gland showed more prominent acidic mucins, while Weber's gland expressed neutral mucins. The lingual epithelium of the fruit-eating bat had an outer covering of cornified non-nucleated epithelium. On the other hand, the insect-eating bat had an outer covering of nucleated epithelium. It is for the first time to record the existence of the entoglossal plates of both species which consisted of a bony core in the fruit-eating bat and a cartilaginous element in the insect-eating bat. The current study represents an attempt to shed more light on the tongue evolution among mammalian vertebrates.

Hantavirus antibodies among phyllostomid bats from the arc of deforestation in Southern Amazonia, Brazil

In order to determine whether southern Amazonian bats could harbour hantaviruses we, serologically and molecularly, screened blood, saliva, excreta and organ tissues of 47 bats captured from September to December 2015. We found that only phyllostomid bats presented antibodies against hantavirus. The seropositive bats belonged to two species of Phyllostomid bats: the greater spear-nosed bat Phyllostomus hastatus (omnivorous) and the gnome fruit-eating bat Dermanura gnoma. The overall seroprevalence was of 4.2%. Therefore, we show here that hantaviruses are circulating among phyllostomid bats in the Amazonian arc of deforestation.

Estimating seed dispersal distance: A comparison of methods using animal movement and plant genetic data on two primate-dispersed Neotropical plant species

Seed dispersal distance (SDD) critically influences the survival of seedlings, spatial patterns of genetic diversity within plant populations, and gene flow among plant populations. In animal-dispersed species, foraging behavior and movement patterns determine SDD. Direct observations of seed dispersal events by animals in natural plant populations are mostly constrained by the high mobility and low visibility of seed dispersers. Therefore, diverse alternative methods are used to estimate seed dispersal distance, but direct comparisons of these approaches within the same seed dispersal system are mostly missing.We investigated two plant species with different life history traits, Leonia cymosa and Parkia panurensis, exclusively dispersed by two tamarin species, Saguinus mystax and Leontocebus nigrifrons. We compared SDD estimates obtained from direct observations, genetic identification of mother plants from seed coats, parentage analysis of seedlings/saplings, and phenomenological and mechanistic modeling approaches.SDD derived from the different methods ranged between 158 and 201 m for P. panurensis and between 178 and 318 m for L. cymosa. In P. panurensis, the modeling approaches resulted in moderately higher estimates than observations and genotyping of seed coats. In L. cymosa, parentage analysis resulted in a lower estimate than all other methods. Overall, SDD estimates for P. panurensis (179 ± 16 m; mean ± SD) were significantly lower than for L. cymosa (266 ± 59 m; mean ± SD).Differences among methods were related to processes of the seed dispersal loop integrated by the respective methods (e.g., seed deposition or seedling distribution). We discuss the merits and limitations of each method and highlight the aspects to be considered when comparing SDD derived from different methodologies. Differences among plant species were related to differences in reproductive traits influencing gut passage time and feeding behavior, highlighting the importance of plant traits on animal-mediated seed dispersal distance.

Movement ecology of the carnivorous woolly false vampire bat (Chrotopterus auritus) in southern Mexico

Deforestation is a critical threat to bats. The woolly false vampire bat Chrotopterus auritus is a carnivorous bat that is both an indicator species for well-conserved forests and a threatened species in Mexico and other countries due to deforestation. We currently lack the information needed to assess the effects of forest fragmentation and destruction on their populations and to develop plans for their conservation. We used GPS loggers to study the movement patterns of C. auritus in southern Mexico. We observed 72 foraging nights by GPS-tagging 10 individuals from two colonies on 32 occasions in a highly disturbed heterogeneous landscape with extensive deforestation (Hormiguero), and in a more homogeneous, well-preserved forested landscape (Monterrey). Tracked false vampire bats averaged a home range of 108.24 ha, a core foraging area of 3.78 ha and average maximum flight distances of 2.06 km. The bats ranged farther and flew significantly longer distances in Hormiguero than in Monterrey, with males flying longer and more variable distances. They used the well-preserved semi-deciduous forest more often than secondary forest and agricultural fields for traveling and foraging, but the bats occasionally moved and hunted along the borders of secondary forest and agricultural fields adjacent to semi-deciduous conserved forest areas. Although this carnivorous bat might cope with some fragmentation, we suggest that large well-preserved forested areas are highly important for its conservation.

Natural infection of Neotropical bats with hantavirus in Brazil

Bats (Order: Chiroptera) harbor a high diversity of emerging pathogens presumably because their ability to fly and social behavior favor the maintenance, evolution, and dissemination of these pathogens. Until 2012, there was only one report of the presence of Hantavirus in bats. Historically, it was thought that these viruses were harbored primarily by rodent and insectivore small mammals. Recently, new species of hantaviruses have been identified in bats from Africa and Asia continents expanding the potential reservoirs and range of these viruses. To assess the potential of Neotropical bats as hosts for hantaviruses and its transmission dynamics in nature, we tested 53 bats for active hantaviral infection from specimens collected in Southeastern Brazil. Part of the hantaviral S segment was amplified from the frugivorous Carollia perspicillata and the common vampire bat Desmodus rotundus. DNA sequencing showed high similarity with the genome of Araraquara orthohantavirus (ARQV), which belongs to one of the more lethal hantavirus clades (Andes orthohantavirus). ARQV-like infection was detected in the blood, urine, and organs of D. rotundus. Therefore, we describe a systemic infection in Neotropical bats by a human pathogenic Hantavirus. We also propose here a schematic transmission dynamics of hantavirus in the study region. Our results give insights to new, under-appreciated questions that need to be addressed in future studies to clarify hantavirus transmission in nature and avoid hantavirus outbreaks.

Proximity of breeding and foraging areas affects foraging effort of a crepuscular, insectivorous bird

When complementary resources are required for an optimal life cycle, most animals need to move between different habitats. However, the level of connectivity between resources can vary and, hence, influence individuals’ behaviour. We show that landscape composition and configuration affect the connectivity between breeding (heathlands) and foraging habitats (extensively-grazed grasslands) of the European Nightjar (Caprimulgus europaeus), a crepuscular insectivorous bird. On a daily basis, nightjars connect breeding and foraging sites by rapidly crossing unsuitable habitats in order to exploit a higher prey biomass in foraging sites. However, low availability of foraging habitat near breeding sites and clustered landscapes greatly increase foraging distance. Birds occupying these sub-optimal breeding areas compensate for longer travels by increasing foraging duration, and their physiology shows increased stress levels. All findings suggest that landscape heterogeneity can affect population dynamics of nightjars. Therefore, we recommend an integrated management approach for this EU-protected bird species.

Effects of a wind farm installation on the understory bat community of a highly biodiverse tropical region in Mexico

Wind energy has rapidly become an important alternative among renewable energies, and it is generally considered clean. However, little is known about its impact at the level of ecological communities, especially in biodiversity hotspots. The Isthmus of Tehuantepec is a highly biodiverse region in Mesoamerica, and has the highest potential for generating wind energy in Mexico. To assess the effects of installing a wind farm on the understory bat community in a landscape of fragmented habitat, we assessed its diversity and composition over four stages of installation (site preparation, construction, and two stages of operation). We captured 919 bats belonging to 22 species. Species richness, functional diversity and phylogenetic diversity decreased during construction and the first stage of operation. However, these components of biodiversity increased during the second stage of operation, and species composition began to resemble that of the site preparation stage. No species considered as sensitive to disturbance was recorded at any stage. This is the first study to reveal the diversity of a Neotropical bat community after wind turbines begin to operate.

Long-distance movement by a great fruit-eating bat, Artibeus lituratus (Olfers, 1818), in southeastern Brazil (Chiroptera, Phyllostomidae): evidence for migration in Neotropical bats?

In Brazil, bat migrations have been inferred based on seasonal variations in bat abundances observed for several species, probably as a result of variations in temperature and food availability. However, direct evidence of individual medium to long distance (> 10 km) movements, based on marked specimens, is restricted to large frugivorous bats, genus Artibeus (Phyllostomidae). We report the longest bat movement recorded in Brazil, along 113 km in a straight line, difference in altitude of 738 m, from a mixed Araucaria forest in Curitiba, PR, to the Atlantic Forest, Alto Ribeira, SP, by a female Artibeus lituratus (Olfers, 1818), over a period of 14 months. This data is consistent with the occurrence of migratory movements in Neotropical bats, such as the ecologically flexible Artibeus spp., over relatively large areas, probably with short stopover foraging intervals. Implications for the conservation of these bats are clear, as their home ranges may be much larger than their foraging areas, encompassing more than one biome and overcoming political borders.