Temporal Beta Diversity of Bird Assemblages in Agricultural Landscapes: Land Cover Change vs. Stochastic Processes

Plant Invasion-Induced Habitat Changes Impact a Bird Community through the Taxonomic Filtering of Habitat Assemblages

Describing the spatial distribution of communities is crucial to understanding how environmental disturbance can affect biodiversity. Agricultural lands are susceptible to disturbances of anthropogenic origin and have been identified as ecosystems of conservation concern. Such lands are vulnerable to invasions by anthropogenically introduced non-native plants disturbing habitats. This research focused on the invasion-induced taxonomic filtering of birds with shared habitat requirements. The birds were surveyed along a gradient of invasion-altered areas (far from the invasion, uninvaded although susceptible to invaders, and invaded) to identify changes in bird assemblages (ground/herb dwellers, bush foragers, ecotone birds, and tree foragers) caused by this disturbance. Data were collected from 112 sites sampled in southeastern Poland. There were significantly fewer bird species from each assemblage on invaded sites than on uninvaded sites, although exposed to invasion, despite the decrease in the abundance of only ground/herb dwellers. Beta diversity analysis showed that sites with invasion contained bird communities significantly different from those at other sites. Invasion-induced changes resulted in a significant reduction in the diversity of ground/herb dwellers in comparison with uninvaded sites and created a distinctive bush bird assemblage. This was most likely due to the transformation of the grassland layer and the thickening of the shrub layer by plant invaders, which resemble shrubs in morphology. The results indicated the filtering effect of invasion on bird species composition at the level of two habitat assemblages despite the decreases in bird abundance and species diversity of the whole community.

Climate-driven shifts in the diversity of plants in the Neotropical seasonally dry forest: Evaluating the effectiveness of protected areas

Given the current environmental crisis, biodiversity protection is one of the most urgent socio-environmental priorities. However, the effectiveness of protected areas (PAs), the primary strategy for safeguarding ecosystems, is challenged by global climate change (GCC), with evidence showing that species are shifting their distributions into new areas, causing novel species assemblages. Therefore, there is a need to evaluate PAs' present and future effectiveness for biodiversity under the GCC. Here, we analyzed changes in the spatiotemporal patterns of taxonomic and phylogenetic diversity (PD) of plants associated with the Neotropical seasonally dry forest (NSDF) under GCC scenarios. We modeled the climatic niche of over 1000 plant species in five representative families (in terms of abundance, dominance, and endemism) of the NSDF. We predicted their potential distributions in the present and future years (2040, 2060, and 2080) based on an intermediate scenario of shared socio-economic pathways (SSP 3.70), allowing species to disperse to new sites or constrained to the current distribution. Then, we tested if the current PAs network represents the taxonomic and phylogenetic diversities. Our results suggest that GCC could promote novel species assemblages with local responses (communities' modifications) across the biome. In general, models predicted losses in the taxonomic and phylogenetic diversities of all the five plant families analyzed across the distribution of the NSDF. However, in the northern floristic groups (i.e., Antilles and Mesoamerica) of the NSDF, taxonomic and PD will be stable in GCC projections. In contrast, across the NSDF in South America, some cores will lose diversity while others will gain diversity under GCC scenarios. PAs in some NSDF regions appeared insufficient to protect the NSDF diversity. Thus, there is an urgent need to assess how the PA system could be better reconfigured to warrant the protection of the NSDF.

Stochastic processes shape the functional and phylogenetic structure of bird assemblages at the mine area in southwest China

Understanding the mechanisms of community assembly is a key question in ecology. Metal pollution may result in significant changes in bird community structure and diversity, with implications for ecosystem processes and function. However, the relative importance of these processes in shaping the bird community at the polluted area is still not clear. Here, we explored bird species richness, functional, and phylogenetic diversity, and the assembly processes of community at the mine region of southwest China. Our results showed that the 3 dimensions of diversity at the mine area were lower than that at the reference sites. In the community assembly, the result was 0 < NRI/ NFRI < 1.96, which indicated deterministic processes (environmental filtering) might drive community clustering. The results of the neutral community model, and normalized stochasticity ratio, showed the dominant role of stochastic processes in shaping the bird community assembly. We further quantified the community-level habitat niche breadth (Bcom), and we found that there was no difference in Bcom-value between the mine area and reference sites. This indicates that the bird communities at the mine area and 3 reference sites were not subjected to extreme environmental selection (same or different resource allocation) to form a highly specialized niche. These findings provide insights into the distribution patterns and dominant ecological processes of bird communities under metal exposure, and extend the knowledge in community assembly mechanisms of bird communities living in the mine area.

Past and recent anthropogenic pressures drive rapid changes in riverine fish communities

Understanding how and why local communities change is a pressing task for conservation, especially in freshwater systems. It remains challenging because of the complexity of biodiversity changes, driven by the spatio-temporal heterogeneity of human pressures. Using a compilation of riverine fish community time series (93% between 1993 and 2019) across the Palaearctic, Nearctic and Australasia realms, we assessed how past and recent anthropogenic pressures drive community changes across both space and time. We found evidence of rapid changes in community composition of 30% per decade characterized by important changes in the dominant species, together with a 13% increase in total abundance per decade and a 7% increase in species richness per decade. The spatial heterogeneity in these trends could be traced back to the strength and timing of anthropogenic pressures and was mainly mediated by non-native species introductions. Specifically, we demonstrate that the negative effects of anthropogenic pressures on species richness and total abundance were compensated over time by the establishment of non-native species, a pattern consistent with previously reported biotic homogenization at the global scale. Overall, our study suggests that accounting for the complexity of community changes and its drivers is a crucial step to reach global conservation goals.

Environmental Filtering and Dispersal Limitations Driving the Beta Diversity Patterns at Different Scales of Secondary Evergreen Broadleaved Forests in the Suburbs of Hangzhou

Subtropical suburban secondary evergreen broadleaved forests are essential in regulating the ecological environment's quality and promoting urban sustainable development. In the suburbs of Hangzhou City, well-preserved secondary evergreen broadleaved forest communities were selected to establish a 6 ha forest dynamic monitoring plot. Community surveys and environmental factor measurements were conducted in this area. This study investigated the beta diversity patterns at different scales by considering the environmental and spatial factors to explore the driving beta diversity. Using a similar paired-site beta diversity decomposition method, the study aimed to investigate the differences in species composition and the mechanisms of multiple species coexistence within the secondary evergreen broadleaved forest communities. The results showed that the beta diversity of the suburban secondary evergreen broadleaved forest communities decreased with the increasing spatial scale. Both the dispersal limitation and the environmental filtering were found to drive the formation of beta diversity patterns in these subtropical suburban forests. At relatively smaller scales (<100 m), species turnover was found to determine the beta diversity patterns of the suburban secondary evergreen broadleaved forests. Dispersal limitation had a dominant influence at more minor scales, while the effect of environmental filtering gradually increased with scale, and the impact of the dispersal limitation decreased. The partitioning of the beta diversity in subtropical secondary evergreen broadleaved forests in China provides critical scientific insights into the spatial distribution patterns and changes in biodiversity. It offers valuable knowledge for the conservation and understanding of biodiversity maintenance in the region.

Hernández-Valencia J, F. Gómez G, M. Correa M. Spatial and Temporal Diversity Variation in the Anopheles Communities in Malaria-Endemic Regions of Colombia

This study aimed to evaluate at a temporospatial scale, the influence of anthropogenic land cover changes in the Anopheles species community composition and diversity in two Colombian malaria-endemic regions, Bajo Cauca and Pacific. To determine variations over time, mosquitoes were collected in two time periods; land cover types were characterized on orthorectified aerial photographs, and landscape metrics were estimated for each locality and period. A temporal dissimilarity analysis to evaluated species replacement and the nestedness species loss/gain showed the influence of the species loss or gain component on Anopheles species assemblage (23%). The relationship between land cover variation and Anopheles beta diversity, evaluated by regression analysis, showed the effect of forest variation in the Anopheles community (βsim and forest r2 = 0.9323; βsne and forest r2 = 0.9425). Furthermore, a canonical correspondence analysis showed that the land cover types associated with Anopheles species presence were bare soil, shrub, wet areas, and forest. Results demonstrated the impact of land cover changes attributed to human activities on Anopheles population dynamics, over time; this was evidenced as species loss or gain, which was specific to each locality. Notably, the main malaria vectors were dominant in most localities over time, suggesting their tolerance to anthropogenic transformations; alternatively, the environmental changes are providing adequate ecological conditions for their persistence. Finally, the data generated are relevant for understanding the impact that environmental change may have on the dynamics of the neotropical malaria vectors. Thus, this research has potential implications for vector control interventions.

Characterization of the microbiota dynamics associated with Moniliophthora roreri, causal agent of cocoa frosty pod rot disease, reveals new viral species

Introduction

Theobroma cacao, the cocoa tree, is a target for pathogens, such as fungi from the genera Phytophthora, Moniliophthora, Colletotrichum, Ceratocystis, among others. Some cacao pathogens are restricted to specific regions of the world, such as the Cacao swollen shoot virus (CSSV) in West African countries, while others are expanding geographically, such as Moniliophthora roreri in the Americas. M. roreri is one of the most threatening cacao pathogens since it directly attacks the cacao pods driving a significant reduction in production, and therefore economic losses. Despite its importance, the knowledge about the microenvironment of this pathogen and the cocoa pods is still poorly characterized.

Methods

Herein we performed RNA sequencing of spores in differential stages of culture in a medium supplemented with cacao pod extract and mycelium collected of the susceptible variety ICT 7121 naturally infected by the pathogen to evaluate the diversity and transcriptional activity of microorganisms associated with the in vitro sporulation of M. roreri.

Results

Our data revealed a great variety of fungi and bacteria associated with M. roreri, with an exceptional diversity of individuals from the genus Trichoderma sp. Interestingly, the dynamics of microorganisms from different kingdoms varied proportionally, suggesting they are somehow affected by M. roreri culture time. We also identified three sequences similar to viral genomes from the Narnaviridae family, posteriorly confirmed by phylogenetic analysis as members of the genus Narnavirus. Screening of M. roreri public datasets indicated the virus sequences circulating in samples from Ecuador, suggesting a wide spread of these elements. Of note, we did not identify traces of the viral sequences in the M. roreri genome or DNA sequencing, restricting the possibility of these sequences representing endogenized elements.

Discussion

To the best of our knowledge, this is the first report of viruses infecting the fungus of the genus Moniliophthora and only the third description of viruses that are able to parasite elements from the Marasmiaceae family.

Diversity and distribution patterns of Ecuador’s dung beetles (Coleoptera: Scarabaeinae)

Introduction

Ecuador harbors an astounding number of ecosystems and species. However, anthropogenic land-use changes are the primary drivers of biodiversity loss in major taxonomic groups, especially insects. Among them, the Scarabaeinae subfamily containing dung beetles, is an excellent taxon for studying taxonomic and functional diversity, as they are relatively stable taxonomically and have a wide variety of ecological services. Their distribution is mainly influenced by biogeography and climate as their main ecological and environmental factors will allow us to quantify what aspects of diversity are being impacted under different circumstances and at different scales.

Methods

To understand the main of dung beetle distribution drivers, we analyzed a museum database from the National Institute of Biodiversity, Ecuador (INABIO) of over 5000 dung beetle specimens with 122 species collected throughout the country, we addressed the following questions: i) How does tribe distribution vary across climatic and elevational gradients? and ii) How does functional and taxonomic beta diversity vary across spatial scales? To address them, we focused on three main tribes: Canthonini, Coprini, and Phanaeini. We constructed GLM’s and niche-based models to estimate Ecuador’s distributions based on climate variables to explore potential predictor variables, using tree classification models, along with taxonomic and functional beta diversity across scales.

Results

The main variables influencing dung beetle distribution were elevation, and precipitation. The Phanaeini niche model is significantly better at predicting dung beetle presence throughout Ecuador than Canthonini and Coprini. We found high turnover in functional groups at larger scales, suggesting that dung beetles show high levels of habitat specialization, which associates to our findings where taxonomic beta diversity was higher in the Amazon basin compared to the coastal region. This may be due to the higher rate of dung production in Amazonia. Our findings also suggest that dung beetles are not found in areas above 2000m, mainly because dung beetles are well adapted to warmer and moist climatic regions. Precipitation and elevation are consistently essential variables for predicting Canthonini and Coprini presence, while temperature explains Phanaeini presence. Low levels of species turnover at the regional scale may be because the total species richness in Ecuador is different, where divergence in taxonomic beta diversity between the two regions is an artifact of such differences in richness in Amazonia versus the coast, the distinction is also due to nonrandomly low taxonomic beta diversity levels in the coastal region.

Conclusions

Our results provide an essential framework for evaluating potential dung beetle habitat and diversity at different scales; therefore, by identifying dung beetles’ diversity, combined with considerations of habitat fragmentation, human land-use alteration, and climate change, will be an important next step to inform better and prioritize dung beetle conservation efforts in other countries.

Homogenization of terrestrial mammals in fragmented rainforests: the loss of species turnover and its landscape drivers

Understanding the factors and mechanisms shaping differences in species composition across space and time (β-diversity) in human-modified landscapes has key ecological and applied implications. This topic is, however, challenging because landscape disturbance can promote either decreases (biotic homogenization) or increases (biotic differentiation) in β-diversity. We assessed temporal differences in intersite β-diversity of medium-bodied and large-bodied mammals in the fragmented Lacandona rainforest, Mexico. We hypothesized that, given the relatively short history of land-use changes in the region, and the gain and loss of some species caused by landscape spatial changes, β-diversity would increase through time, especially its nestedness component. We estimated β-diversity between 24 forest sites (22 forest patches and two continuous forest sites) in 2011 and 2017 to assess whether β-diversity is decreasing or increasing in the region, and calculated its turnover and nestedness components to understand the mechanisms responsible for changes in β-diversity, separately assessing mammal groups with different body mass, feeding guild, and habitat specialization. We then related such temporal changes in β-diversity to temporal changes in five landscape variables (forest cover, matrix openness, number of patches, edge density and interpatch distance) to identify the landscape drivers of β-diversity. In contrast with our expectations, β-diversity decreased over time, suggesting an ongoing biotic homogenization process. This pattern was mostly driven by a decrease in species turnover in all mammal groups, especially in landscapes with decreasing forest cover and increasing forested matrices. Although the nestedness component showed a three-fold increase through time, species turnover was 22 and six times higher than nestedness in 2011 and 2017, respectively. The decreased turnover appears to be driven by an increase in dispersal (i.e., spillover) of native species among patches. The prevalence of species turnover over nestedness indicates that different forest sites have a fairly distinct subset of species (i.e., high complementarity in species composition). Therefore, conserving all remaining forest patches and increasing forest cover is of utmost importance to effectively maintain β-diversity and conserve the total diversity (γ) of mammal assemblages in this Mesoamerican biodiversity hotspot.

Climate and land-use changes drive biodiversity turnover in arthropod assemblages over 150 years

Long-term studies are essential to understand the impacts of global changes on the multiple facets of biological diversity. Here, we use distribution data for over 600 species of arthropods collected over 150 years from locations across Italy and test how multiple environmental stressors (climate, land use and human population density) influenced assemblage composition and functionality. By carefully reconstructing the temporal changes in these stressors, we explicitly tested how environmental changes can determine the observed changes in taxonomic and functional diversity. We found that rapid changes in precipitation destabilize the assemblages and maximize colonization and extinction rates, especially when coupled with changes in human population density (for taxonomy) or temperature (for functionality). Higher microclimatic heterogeneity increases the stability of biodiversity by reducing taxonomic and functional loss. Finally, changes in natural habitats increased colonization, influencing taxonomic nestedness and functional replacement. The integration of long-term datasets combining distributions, climate and traits may deepen our understanding of the processes underlying biodiversity responses to global-scale drivers.

Identifying the Drivers of Spatial Taxonomic and Functional Beta-Diversity of British Breeding Birds

Spatial variation in community composition may be driven by a variety of processes, including environmental filtering and dispersal limitation. While work has been conducted on the relative importance of these processes on various taxa and at varying resolutions, tests using high-resolution empirical data across large spatial extents are sparse. Here, we use a dataset on the presence/absence of breeding bird species collected at the 10 km × 10 km scale across the whole of Britain. Pairwise spatial taxonomic and functional beta diversity, and the constituent components of each (turnover and nestedness/richness loss or gain), were calculated alongside two other measures of functional change (mean nearest taxon distance and mean pairwise distance). Predictor variables included climate and land use measures, as well as a measure of elevation, human influence, and habitat diversity. Generalized dissimilarity modeling was used to analyze the contribution of each predictor variable to variation in the different beta diversity metrics. Overall, we found that there was a moderate and unique proportion of the variance explained by geographical distance per se, which could highlight the role of dispersal limitation in community dissimilarity. Climate, land use, and human influence all also contributed to the observed patterns, but a large proportion of the explained variance in beta diversity was shared between these variables and geographical distance. However, both taxonomic nestedness and functional nestedness were uniquely predicted by a combination of land use, human influence, elevation, and climate variables, indicating a key role for environmental filtering. These findings may have important conservation implications in the face of a warming climate and future land use change.

Taxonomic and functional turnover of Amazonian stream fish assemblages is determined by deforestation history and environmental variables at multiple scales

Abstract High rates of deforestation, either in the past or the present, affect many of the ecological processes in streams. Integrating deforestation history and the current landscape structure enhances the evaluation of ecological effects of land-use change. This is especially true when contemporary landscape conditions are similar but the temporal path to those conditions differs. One approach that has shown promise for evaluating biodiversity responses over time and space is the β-diversity partitioning, which combines taxonomic and functional trait-based approaches. We tested hypotheses related to stream fish assemblages’ turnover in watersheds with different environmental conditions and deforestation histories. We sampled fish from 75 watersheds in the Machado River basin, Brazil, and environmental factors were quantified at multiple scales. Taxonomic turnover was higher than expected by chance, whereas functional turnover was lower than expected by the observed taxonomic turnover, indicating that deterministic processes are structuring these assemblages. The turnover, and the environmental factors differed among watersheds with different deforestation histories. Besides being scale-dependent, turnover patterns are also likely dependent on land use dynamics and involve time-lags.

Agroecology landscapes

CONTEXT

Agroecology combines agronomic and ecological concepts. It relies on the enhancement of biodiversity and related ecosystem services to support agricultural production. It is dependent on biological interactions for the design and management of agricultural systems in agricultural landscapes.

OBJECTIVES

We review the role of landscape ecology to understand and promote biodiversity, pest regulation and crop pollination for the designing of "agroecology landscapes". We illustrate the use of landscape ecological methods for supporting agroforestry systems as an example of agroecological development, and we propose pathways to implement agroecology at landscape scale.

METHODS

The state of the art of how landscape ecology contributes to agroecology development is summarized based on a literature review.

RESULTS

Agroecology requires thinking beyond the field scale to consider the positioning, quality and connectivity of fields and semi-natural habitats at larger spatial scales. The spatial and temporal organisation of semi-natural elements and the crop mosaic interact. Understanding this interaction is the pre-requisite for promoting patterns and mechanisms that foster biodiversity and ecosystem service provision. Promoting agroecological practices beyond individual farm borders can be rooted in a bottom-up approach from agroecological lighthouse farms to farm networks to amplify agroecology adoption at the landscape scale.

CONCLUSIONS

Achieving agricultural landscapes composed of fields and farms following agroecological management requires understanding of biodiversity patterns, biological interactions and mechanisms that determine and boost ecosystem functioning to improve services at landscape scale, involving farmers in a bottom-up and context-specific approach.

Climatic variables drive temporal patterns of α and β diversities of dung beetles

Understanding the mechanisms underpinning spatiotemporal diversity patterns of biological communities is a major goal of ecology. We aimed to test two ecological hypotheses: (i) temporal patterns of β-diversity will mostly be driven by nestedness, with a loss of species from summer to winter, and (ii) nestedness values will correlate with climatic variables instead of turnover values, indicating either a loss of species during winter or a gain of species during summer. We sampled dung beetles using standardized sampling protocols along a year in four Atlantic forest sites: two at the northwest and two at the central region of Rio Grande do Sul state, southern Brazil. We partitioned temporal patterns of β-diversity into turnover and nestedness in order to investigate if community changes are driven by species substitution or gain/loss across time. Our results highlighted five main findings: (i) dung beetle composition varied more with sites than site geographic position; (ii) there was almost one and a half 'true' dung beetle assemblages regarding the spatial distribution of species weighed by abundance; (iii) we found a positive influence of mean temperature and a negative influence of relative humidity on both species richness and abundance; (iv) both spatial and temporal dissimilarity among sites were dominated by species replacement, while the relative importance of nestedness was higher in temporal than spatial patterns; (v) there was an effect of precipitation and relative humidity on temporal patterns of β-diversity components, but these effects were site-dependent. Contrary to our expectations, the β-diversity component of turnover dominated both spatial and temporal patterns in dung beetle dissimilarity among sites and months. Distinct climatic variables affected differently the α-diversity and β-diversity components of dung beetle assemblages. Partitioning β-diversity into temporal components is a promising approach to unveil patterns of the community dynamics and to produce insights on mechanisms underlying such patterns.

Partitioning beta diversity in a tropical karst seasonal rainforest in Southern China

Both deterministic and stochastic processes have been linked to forest community assembly; however, their contribution to beta diversity has not been properly explored, and no studies to date have investigated their impacts on sparse depleted soils in forests that contain widespread exposed limestone karst. We found that the pairwise differences in species composition between quadrates was determined by a balanced variation in abundance, whereby the individuals of some species at one site were substituted by an equivalent number of individuals of different species at another site. Both the total beta diversity and its balanced variation in abundance declined with increasing sampling grain size. Our research indicated that environmental differences exert a strong influence on beta diversity, particularly total beta diversity and its balanced abundance variation in larger grain sizes. It was evident that deterministic and stochastic processes worked together, and that deterministic processes were more important than stochastic processes in the regulation of beta diversity in this heterogeneous tropical karst seasonal rainforest of Southern China. However, in future research a functional trait based approach will be required to tease out the relative degree of deterministic and stochastic processes toward an assessment of the temporal changes in species composition.

Beta Diversity in a Highly Heterogeneous Area: Disentangling Species and Taxonomic Dissimilarity for Terrestrial Vertebrates

Quantifying differences in species composition among communities provides important information related to the distribution, conservation and management of biodiversity, especially when two components are recognized: dissimilarity due to turnover, and dissimilarity due to richness differences. The ecoregions in central Mexico, within the Mexican Transition Zone, have outstanding environmental heterogeneity and harbor huge biological richness, besides differences in the origin of the biota. Therefore, biodiversity studies in this area require the use of complementary measures to achieve appropriate information that may help in the design of conservation strategies. In this work we analyze the dissimilarity of terrestrial vertebrates, and the components of turnover and richness differences, among six ecoregions in the state of Hidalgo, central Mexico. We follow two approaches: one based on species level dissimilarity, and the second on taxonomic dissimilarity. We used databases from the project “Biodiversity in the state of Hidalgo”. Our results indicate that species dissimilarity is higher than taxonomic dissimilarity, and that turnover contributes more than richness differences, both for species and taxonomic total dissimilarity. Moreover, total dissimilarity, turnover dissimilarity and the dissimilarity due to richness differences were positively related in the four vertebrate groups. Reptiles had the highest values of dissimilarity, followed by mammals, amphibians and birds. For reptiles, birds, and mammals, species turnover was the most important component, while richness differences had a higher contribution for amphibians. The highest values of dissimilarity occurred between environmentally contrasting ecoregions (i.e., tropical and temperate forests), which suggests that environmental heterogeneity and differences in the origin of biotas are key factors driving beta diversity of terrestrial vertebrates among ecoregions in this complex area.

The number of limiting resources in the environment controls the temporal diversity patterns in the algal benthos

The role of the number of limiting resources (NLR) on species richness has been the subject of much theoretical and experimental work. However, how the NLR controls temporal beta diversity and the processes of community assembly is not well understood. To address this knowledge gap, we initiated a series of laboratory microcosm experiments, exposing periphyton communities to a gradient of NLR from 0 to 3, generated by supplementation with nitrogen, phosphorus, iron, and all their combinations. We hypothesized that similarly to alpha diversity, shown to decrease with the NLR in benthic algae, temporal beta diversity would also decline due to filtering. Additionally, we predicted that the NLR would also affect turnover and community nestedness, which would show opposing responses. Indeed, as the NLR increased, temporal beta diversity decreased; turnover, indicative of competition, decreased; and nestedness, suggestive of complementarity, increased. Finally, the NLR determined the role of deterministic versus stochastic processes in community assembly, showing respectively an increasing and a decreasing trend. These results imply that the NLR has a much greater, yet still unappreciated influence on producer communities, constraining not only alpha diversity but also temporal dynamics and community assembly.

Human-Induced Landscape Changes Homogenize Atlantic Forest Bird Assemblages through Nested Species Loss

The increasing number of quantitative assessments of homogenization using citizen science data is particularly important in the Neotropics, given its high biodiversity and ecological peculiarity, and whose communities may react differently to landscape changes. We looked for evidence of taxonomic homogenization in terrestrial birds by investigating patterns of beta diversity along a gradient of human-altered landscapes (HAL), trying to identify species associated with this process. We analyzed bird data from 87 sites sampled in a citizen science program in the south Brazilian Atlantic Forest. Regional-scale taxonomic homogenization was assessed by comparing beta diversity among sites in different HALs (natural, rural or urban landscapes) accounting for variation derived from geographical distance and zoogeographical affinities by georeferencing sites and determining their position in a phytogeographical domain. Beta diversity was calculated by multivariate dispersion and by testing compositional changes due to turnover and nestedness among HALs and phytogeographical domains. Finally, we assessed which species were typical for each group using indicator species analysis. Bird homogenization was indicated by decreases in beta diversity following landscape changes. Beta diversity of rural sites was roughly half that of natural habitats, while urban sites held less than 10% of the natural areas' beta diversity. Species composition analysis revealed that the turnover component was important in differentiating sites depending on HAL and phytogeography; the nestedness component was important among HALs, where directional species loss is maintained even considering effects of sampling effort. A similar result was obtained among phytogeographical domains, indicating nested-pattern dissimilarity among compositions of overlapping communities. As expected, a few native generalists and non-native urban specialists were characteristic of rural and urban sites. We generated strong evidence that taxonomic homogenization occurs in the south Brazilian Atlantic Forest as a result of a directional and nested species loss, with the resultant assemblages composed of few disturbance-tolerant birds.