Seasonal and Diel Vocalization Patterns of Antarctic Blue Whale (Balaenoptera musculus intermedia) in the Southern Indian Ocean: A Multi-Year and Multi-Site Study

Diverse baleen whale acoustic occurrence around two sub-Antarctic islands: A tale of residents and visitors

Knowledge on the occurrence and behaviour of baleen whales around sub-Antarctic regions is limited, and usually based on short, seasonal sighting research from shore or research vessels and whaling records, neither of which provide accurate and comprehensive year-round perspectives of these animals' ecology. We investigated the seasonal acoustic occurrence and diel vocalizing pattern of baleen whales around the sub-Antarctic Prince Edward Islands (PEIs) using passive acoustic monitoring data from mid-2021 to mid-2023, detecting six distinct baleen whale songs from Antarctic blue whales, Madagascan pygmy blue whales, fin whales, Antarctic minke whales, humpback whales, and sei whales. Antarctic blue and fin whales were detected year-round whereas the other species' songs were detected seasonally, including a new Antarctic minke whale bio-duck song sub-type described here for the first time. Antarctic minke and sei whales were more vocally active at night-time whereas the other species had no clear diel vocalizing patterns. Random forest models identified month and/or sea surface temperature as the most important predictors of all baleen whale acoustic occurrence. These novel results highlight the PEIs as a useful habitat for baleen whales given the number of species that inhabit or transit through this region.

Ultrasonic vocalisation rate tracks the diurnal pattern of activity in winter phenotype Djungarian hamsters (Phodopus sungorus)

Vocalisations are increasingly being recognised as an important aspect of normal rodent behaviour yet little is known of how they interact with other spontaneous behaviours such as sleep and torpor, particularly in a social setting. We obtained chronic recordings of the vocal behaviour of adult male and female Djungarian hamsters (Phodopus sungorus) housed under short photoperiod (8 h light, 16 h dark, square wave transitions), in different social contexts. The animals were kept in isolation or in same-sex sibling pairs, separated by a grid which allowed non-physical social interaction. On approximately 20% of days hamsters spontaneously entered torpor, a state of metabolic depression that coincides with the rest phase of many small mammal species in response to actual or predicted energy shortages. Animals produced ultrasonic vocalisations (USVs) with a peak frequency of 57 kHz in both social and asocial conditions and there was a high degree of variability in vocalisation rate between subjects. Vocalisation rate was correlated with locomotor activity across the 24-h light cycle, occurring more frequently during the dark period when the hamsters were more active and peaking around light transitions. Solitary-housed animals did not vocalise whilst torpid and animals remained in torpor despite overlapping with vocalisations in social-housing. Besides a minor decrease in peak USV frequency when isolated hamsters were re-paired with their siblings, changing social contexts did not influence vocalisation behaviour or structure. In rare instances, temporally overlapping USVs occurred when animals were socially-housed and were grouped in such a way that could indicate coordination. We did not observe broadband calls (BBCs) contemporaneous with USVs in this paradigm, corroborating their correlation with physical aggression which was absent from our experiment. Overall, we find little evidence to suggest a direct social function of hamster USVs. We conclude that understanding the effects of vocalisations on spontaneous behaviours, such as sleep and torpor, will inform experimental design of future studies, especially where the role of social interactions is investigated.

Effects of duty cycle on passive acoustic monitoring metrics: The case of blue whale songs

Long-term fixed passive acoustic monitoring of cetacean populations is a logistical and technological challenge, often limited by the battery capacity of the autonomous recorders. Depending on the research scope and target species, temporal subsampling of the data may become necessary to extend the deployment period. This study explores the effects of different duty cycles on metrics that describe patterns of seasonal presence, call type richness richness, and daily call rate of three blue whale acoustics populations in the Southern Indian Ocean. Detections of blue whale calls from continuous acoustic data were subsampled with three different duty cycles of 50%, 33%, and 25% within listening periods ranging from 1 min to 6 h. Results show that reducing the percentage of recording time reduces the accuracy of the observed seasonal patterns as well as the estimation of daily call rate and call call type richness. For a specific duty cycle, short listening periods (5-30 min) are preferred to longer listening periods (1-6 h). The effects of subsampling are greater the lower the species' vocal activity or the shorter their periods of presence. These results emphasize the importance of selecting a subsampling scheme adapted to the target species.

Seasonal acoustic presence of marine mammals at the South Orkney Islands, Scotia Sea

Increased knowledge about marine mammal seasonal distribution and species assemblage from the South Orkney Islands waters is needed for the development of management regulations of the commercial fishery for Antarctic krill (Euphausia superba) in this region. Passive acoustic monitoring (PAM) data were collected during the autumn and winter seasons in two consecutive years (2016, 2017), which represented highly contrasting environmental conditions due to the 2016 El Niño event. We explored differences in seasonal patterns in marine mammal acoustic presence between the two years in context of environmental cues and climate variability. Acoustic signals from five baleen whale species, two pinniped species and odontocete species were detected and separated into guilds. Although species diversity remained stable over time, the ice-avoiding and ice-affiliated species dominated before and after the onset of winter, respectively, and thus demonstrating a shift in guild composition related to season. Herein, we provide novel information about local marine mammal species diversity, community structure and residency times in a krill hotspot. Our study also demonstrates the utility of PAM data and its usefulness in providing new insights into the marine mammal habitat use and responses to environmental conditions, which are essential knowledge for the future development of a sustainable fishery management in a changing ecosystem.

Temporal occurrence of three blue whale populations in New Zealand waters from passive acoustic monitoring

Describing spatial and temporal occurrence patterns of wild animal populations is important for understanding their evolutionary trajectories, population connectivity, and ecological niche specialization, with relevance for effective management. Throughout the world, blue whales produce stereotyped songs that enable identification of separate acoustic populations. We harnessed continuous acoustic recordings from five hydrophones deployed in the South Taranaki Bight (STB) region of Aotearoa New Zealand from January 2016 to February 2018. We examined hourly presence of songs from three different blue whale populations to investigate their contrasting ecological use of New Zealand waters. The New Zealand song was detected year-round with a seasonal cycle in intensity (peak February–July), demonstrating the importance of the region to the New Zealand population as both a foraging ground and potential breeding area. The Antarctic song was present in two distinct peaks each year (June–July; September–October) and predominantly at the offshore recording locations, suggesting northbound and southbound migration between feeding and wintering grounds. The Australian song was only detected during a 10-day period in January 2017, implying a rare vagrant occurrence. We therefore infer that the STB region is the primary niche of the New Zealand population, a migratory corridor for the Antarctic population, and outside the typical range of the Australian population.

Seasonal Trends and Diel Patterns of Downsweep and SEP Calls in Chilean Blue Whales

To learn more about the occurrence and behaviour of a recently discovered population of blue whales, passive acoustic data were collected between January 2012 and April 2013 in the Chiloense ecoregion of southern Chile. Automatic detectors and manual auditing were used to detect blue whale songs (SEP calls) and D calls, which were then analysed to gain insights into temporal calling patterns. We found that D call rates were extremely low during winter (June–August) but gradually increased in spring and summer, decreasing again later during fall. SEP calls were absent for most winter and spring months (July–November) but increased in summer and fall, peaking between March and April. Thus, our results support previous studies documenting the austral summer residency of blue whales in this region, while suggesting that some individuals stay longer, highlighting the importance of this area as a blue whale habitat. We also investigated the daily occurrence of each call type and found that D calls occurred more frequently during dusk and night hours compared to dawn and day periods, whereas SEP calls did not show any significant diel patterns. Overall, these findings help to understand the occurrence and behaviour of endangered Chilean blue whales, enhancing our ability to develop conservation strategies in this important Southern Hemisphere habitat.

Geographically distinct blue whale song variants in the Northeast Pacific

The Northeast Pacific (NEP) population of blue whales Balaenoptera musculus musculus is currently managed as a single stock. We investigated the fine-scale frequency characteristics of 1 NEP blue whale song unit, the B call. We analyzed B calls from passive acoustic data collected between 2010 and 2013 at 2 low-latitude sites, Palmyra Atoll and the Hawaiian Islands, and 3 higher-latitude sites, off southern California, off Washington state and in the Gulf of Alaska. Frequency measurements were extracted along the contour of the third harmonic from each call, and data from each region were compared. Calls from the Gulf of Alaska and Hawai‘i presented a downshift in frequency, beginning just past the midway point of the contour, which was not present in calls recorded from southern California or Palmyra Atoll. Calls from Washington displayed intermediate characteristics between those from the other 2 high-latitude sites. Cluster analysis resulted in consistent grouping of call contours from Washington and southern California, in what we termed the NEP B1 variant, while contours from Hawai‘i and the Gulf of Alaska were grouped together, as a NEP B2 variant. Frequency differences were also observed among the variants; the Gulf of Alaska displayed the highest frequency on average, followed by Washington, then southern California. Consistent with other studies, a yearly decline in the frequency of B calls was also observed. This discovery of at least 2 geographically distinct variants provides the first evidence of vocally distinct subpopulations within the NEP, indicating the possibility of a need for finer-scale population segmentation.

Multiple pygmy blue whale acoustic populations in the Indian Ocean: whale song identifies a possible new population

Blue whales were brought to the edge of extinction by commercial whaling in the twentieth century and their recovery rate in the Southern Hemisphere has been slow; they remain endangered. Blue whales, although the largest animals on Earth, are difficult to study in the Southern Hemisphere, thus their population structure, distribution and migration remain poorly known. Fortunately, blue whales produce powerful and stereotyped songs, which prove an effective clue for monitoring their different ‘acoustic populations.’ The DGD-Chagos song has been previously reported in the central Indian Ocean. A comparison of this song with the pygmy blue and Omura’s whale songs shows that the Chagos song are likely produced by a distinct previously unknown pygmy blue whale population. These songs are a large part of the underwater soundscape in the tropical Indian Ocean and have been so for nearly two decades. Seasonal differences in song detections among our six recording sites suggest that the Chagos whales migrate from the eastern to western central Indian Ocean, around the Chagos Archipelago, then further east, up to the north of Western Australia, and possibly further north, as far as Sri Lanka. The Indian Ocean holds a greater diversity of blue whale populations than thought previously.

Marine soundscape variation reveals insights into baleen whales and their environment: a case study in central New Zealand

Baleen whales reliably produce stereotyped vocalizations, enabling their spatio-temporal distributions to be inferred from acoustic detections. Soundscape analysis provides an integrated approach whereby vocal species, such as baleen whales, are sampled holistically with other acoustic contributors to their environment. Acoustic elements that occur concurrently in space, time and/or frequency can indicate overlaps between free-ranging species and potential stressors. Such information can inform risk assessment framework models. Here, we demonstrate the utility of soundscape monitoring in central New Zealand, an area of high cetacean diversity where potential threats are poorly understood. Pygmy blue whale calls were abundant in the South Taranaki Bight (STB) throughout recording periods and were also detected near Kaikōura during autumn. Humpback, Antarctic blue and Antarctic minke whales were detected in winter and spring, during migration. Wind, rain, tidal and wave activity increased ambient sound levels in both deep- and shallow-water environments across a broad range of frequencies, including those used by baleen whales, and sound from shipping, seismic surveys and earthquakes overlapped in time, space and frequency with whale calls. The results highlight the feasibility of soundscape analysis to quantify and understand potential stressors to free-ranging species, which is essential for conservation and management decisions.

An open access dataset for developing automated detectors of Antarctic baleen whale sounds and performance evaluation of two commonly used detectors

Since 2001, hundreds of thousands of hours of underwater acoustic recordings have been made throughout the Southern Ocean south of 60° S. Detailed analysis of the occurrence of marine mammal sounds in these circumpolar recordings could provide novel insights into their ecology, but manual inspection of the entirety of all recordings would be prohibitively time consuming and expensive. Automated signal processing methods have now developed to the point that they can be applied to these data in a cost-effective manner. However training and evaluating the efficacy of these automated signal processing methods still requires a representative annotated library of sounds to identify the true presence and absence of different sound types. This work presents such a library of annotated recordings for the purpose of training and evaluating automated detectors of Antarctic blue and fin whale calls. Creation of the library has focused on the annotation of a representative sample of recordings to ensure that automated algorithms can be developed and tested across a broad range of instruments, locations, environmental conditions, and years. To demonstrate the utility of the library, we characterise the performance of two automated detection algorithms that have been commonly used to detect stereotyped calls of blue and fin whales. The availability of this library will facilitate development of improved detectors for the acoustic presence of Southern Ocean blue and fin whales. It can also be expanded upon to facilitate standardization of subsequent analysis of spatiotemporal trends in call-density of these circumpolar species.

Acoustic seasonality, behaviour and detection ranges of Antarctic blue and fin whales under different sea ice conditions off Antarctica

Descriptions of seasonal occurrence and behaviour of Antarctic blue and fin whales in the Southern Ocean are of pivotal importance for the effective conservation and management of these endangered species. We used an autonomous acoustic recorder to collect bioacoustic data from January through September 2014 to describe the seasonal occurrence, behaviour and detection ranges of Antarctic blue and fin whale calls off the Maud Rise, Antarctica. From 2479 h of recordings, we detected D- and Z-calls plus the 27 Hz chorus of blue whales, the 20 and 99 Hz pulses of fin whales and the 18-28 Hz chorus of blue and fin whales. Blue whale calls were detected throughout the hydrophone deployment period with a peak occurrence in February, indicating continuous presence of whales in a broad Southern Ocean area (given the modelled detection ranges). Fin whale calls were detected from January through July when sea ice was present on the latter dates. No temporal segregation in peaks of diel calling rates of blue and fin whales was observed in autumn, but a clear temporal segregation was apparent in summer. Acoustic propagation models suggest that blue and fin whale calls can be heard as far as 1700 km from the hydrophone position in spring. Random forest models ranked month of the year as the most important predictor of call occurrence and call rates (i.e. behaviour) for these whales. Our work highlights areas around the Maud Rise as important habitats for blue and fin whales in the Southern Ocean.

Inter-annual decrease in pulse rate and peak frequency of Southeast Pacific blue whale song types

A decrease in the frequency of two southeast Pacific blue whale song types was examined over decades, using acoustic data from several different sources in the eastern Pacific Ocean ranging between the Equator and Chilean Patagonia. The pulse rate of the song units as well as their peak frequency were measured using two different methods (summed auto-correlation and Fourier transform). The sources of error associated with each measurement were assessed. There was a linear decline in both parameters for the more common song type (southeast Pacific song type n.2) between 1997 to 2017. An abbreviated analysis, also showed a frequency decline in the scarcer southeast Pacific song type n.1 between 1970 to 2014, revealing that both song types are declining at similar rates. We discussed the use of measuring both pulse rate and peak frequency to examine the frequency decline. Finally, a comparison of the rates of frequency decline with other song types reported in the literature and a discussion on the reasons of the frequency shift are presented.

Assessing the importance of Isle of Man waters for the basking shark Cetorhinus maximus

Satellite tracking of endangered or threatened animals can facilitate informed conservation by revealing priority areas for their protection. Basking sharks Cetorhinus maximus (n = 11) were tagged during the summers of 2013, 2015, 2016 and 2017 in the Isle of Man (IoM; median tracking duration 378 d, range: 89-804 d; median minimum straight-line distance travelled 541 km, range: 170-10406 km). Tracking revealed 3 movement patterns: (1) coastal movements within IoM and Irish waters, (2) summer northward movements to Scotland and (3) international movements to Morocco and Norway. One tagged shark was bycaught and released alive in the Celtic Sea. Basking sharks displayed inter-annual site fidelity to the Irish Sea (n = 3), a Marine Nature Reserve (MNR) in IoM waters (n = 1), and Moroccan waters (n = 1). Core distribution areas (50% kernel density estimation) of 5 satellite tracked sharks in IoM waters were compared with 3902 public sightings between 2005 and 2017, highlighting west and south coast hotspots. Location data gathered from satellite tagging broadly correspond to the current boundaries of MNRs in IoM waters. However, minor modifications of some MNR boundaries would incorporate ~20% more satellite tracking location data from this study, and protective measures for basking sharks in IoM waters could further aid conservation of the species at local, regional and international scales. We also show the first documented movement of a basking shark from the British Isles to Norway, and the longest ever track for a tagged basking shark (2 yr and 2 mo, 804 d).

Sparse representation-based classification of mysticete calls

This paper presents an automatic classification method dedicated to mysticete calls. This method relies on sparse representations which assume that mysticete calls lie in a linear subspace described by a dictionary-based representation. The classifier accounts for noise by refusing to assign the observed signal to a given class if it is not included into the linear subspace spanned by the dictionaries of mysticete calls. Rejection of noise is achieved without feature learning. In addition, the proposed method is modular in that, call classes can be appended to or removed from the classifier without requiring retraining. The classifier is easy to design since it relies on a few parameters. Experiments on five types of mysticete calls are presented. It includes Antarctic blue whale Z-calls, two types of "Madagascar" pygmy blue whale calls, fin whale 20 Hz calls and North-Pacific blue whale D-calls. On this dataset, containing 2185 calls and 15 000 noise samples, an average recall of 96.4% is obtained and 93.3% of the noise data (persistent and transient) are correctly rejected by the classifier.

On the reliability of acoustic annotations and automatic detections of Antarctic blue whale calls under different acoustic conditions

Evaluation of the performance of computer-based algorithms to automatically detect mammalian vocalizations often relies on comparisons between detector outputs and a reference data set, generally obtained by manual annotation of acoustic recordings. To explore the reproducibility of these annotations, inter- and intra-analyst variability in manually annotated Antarctic blue whale (ABW) Z-calls are investigated by two analysts in acoustic data from two ocean basins representing different scenarios in terms of call abundance and background noise. Manual annotations exhibit strong inter- and intra-analyst variability, with less than 50% agreement between analysts. This variability is mainly caused by the difficulty of reliably and reproducibly distinguishing single calls in an ABW chorus made of overlaying distant calls. Furthermore, the performance of two automated detectors, based on spectrogram correlation or subspace-detection strategy, is evaluated by comparing detector output to a "conservative" manually annotated reference data set, which comprises only analysts' matching events. This study highlights the need for a standardized approach for human annotations and automatic detections, including a quantitative description of their performance, to improve the comparability of acoustic data, which is particularly relevant in the context of collaborative approaches in collecting and analyzing large passive acoustic data sets.

Passive stochastic matched filter for Antarctic blue whale call detection

As a first step to Antarctic blue whale (ABW) monitoring using passive acoustics, a method based on the stochastic matched filter (SMF) is proposed. Derived from the matched filter (MF), this filter-based denoising method enhances stochastic signals embedded in an additive colored noise by maximizing its output signal to noise ratio (SNR). These assumptions are well adapted to the passive detection of ABW calls where emitted signals are modified by the unknown impulse response of the propagation channel. A filter bank is computed and stored offline based on a priori knowledge of the signal second order statistics and simulated colored sea-noise. Then, the detection relies on online background noise and SNR estimation, realized using time-frequency analysis. The SMF output is cross-correlated with the signal's reference (SMF + MF). Its performances are assessed on an ccean bottom seismometer-recorded ground truth dataset of 845 ABW calls, where the location of the whale is known. This dataset provides great SNR variations in diverse soundscapes. The SMF + MF performances are compared to the commonly used MF and to the Z-detector (a sub-space detector for ABW calls). Mostly, the benefits of the use of the SMF + MF are revealed on low signal to noise observations: in comparison to the MF with identical detection threshold, the false alarm rate drastically decreases while the detection rate stays high. Compared to the Z-detector, it allows the extension of the detection range of ≃ 30 km in presence of ship noise with equivalent false discovery rate.

Identification of two potential whale calls in the southern Indian Ocean, and their geographic and seasonal occurrence

Since passive acoustic monitoring is widely used, unidentified acoustic signals from marine mammals are commonly reported. The signal characteristics and emission patterns are the main clues to identify the possible sources. In this study, the authors describe two previously unidentified sounds, recorded at up to five widely-spaced sites (30 × 30 degree area) in the southern Indian Ocean, in 2007 and between 2010 and 2015. The first reported signal (M-call) consists of a single tonal unit near 22 Hz and lasting about 10 s, repeated with an interval longer than 2 min. This signal is only detected in 2007. The second signal (P-call) is also a tonal unit of 10 s, repeated every 160 s, but at a frequency near 27 Hz. Its yearly number increased greatly between 2007 and 2010, and moderately since then. Based on their characteristics and seasonal patterns, this study shows that both signals are clearly distinct from any known calls of blue whale subspecies and populations dwelling in the southern Indian Ocean. However, they display similarities with blue whale vocalizations. More particularly, the P-call can be mistaken for the first tonal unit of the Antarctic blue whale Z-call.