1
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Xi L, Wu X, Wang J, Zhang Z, He M, Zeeshan Z, Stefan T, Schulze WX. Receptor kinase signaling of BRI1 and SIRK1 is tightly balanced by their interactomes as revealed from domain-swap chimaera in AE-MS approaches. Mol Cell Proteomics 2024:100857. [PMID: 39414233 DOI: 10.1016/j.mcpro.2024.100857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Revised: 09/16/2024] [Accepted: 10/09/2024] [Indexed: 10/18/2024] Open
Abstract
At the plasma membrane, in response to biotic and abiotic cues, specific ligands initiate the formation of receptor kinase heterodimers, which regulate activities of plasma membrane proteins and initiate signaling cascades to the nucleus. In this study, we utilized affinity enrichment mass spectrometry (AE-MS) to investigate the stimulus-dependent interactomes of LRR receptor kinases in response to their respective ligands, with an emphasis on exploring structural influences and potential cross-talk events at the plasma membrane. BRI1 and SIRK1 were chosen as receptor kinases with distinct coreceptor preference. By using interactome characteristic of domain-swap chimera following a gradient boosting learning algorithm trained on SIRK1 and BRI1 interactomes, we attribute contributions of extracellular domain, transmembrane domain, juxtamembrane domain and kinase domain of respective ligand-binding receptors to their interaction with their coreceptors and substrates. Our results revealed juxtamembrane domain as major structural element defining the specific substrate recruitment for BRI1 and extracellular domain for SIRK1. Furthermore, the learning algrorithm enabled us to predict the phenotypic outcomes of chimeric receptors based on different domain combinations, which was verified by dedicated experiments. As a result, our work reveals a tightly controlled balance of signaling cascade activation dependent on ligand-binding receptors domains and the internal ligand status of the plant. Moreover, our study shows the robust utility of machine learning classification as a quantitative metric for studying dynamic interactomes, dissecting the contribution of specific domains and predicting their phenotypic outcome.
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Affiliation(s)
- Lin Xi
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
| | - Xuna Wu
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany; State Key Laboratory of Conservation and Utilization of Bio-Resources in Yunnan and Center for Life Science, School of Life Sciences, Yunnan University, Kunming, China
| | - Jiahui Wang
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
| | - Zhaoxia Zhang
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
| | - Mingjie He
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
| | - Zeeshan Zeeshan
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
| | - Thorsten Stefan
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
| | - Waltraud X Schulze
- Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany
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2
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Jaillais Y, Bayer E, Bergmann DC, Botella MA, Boutté Y, Bozkurt TO, Caillaud MC, Germain V, Grossmann G, Heilmann I, Hemsley PA, Kirchhelle C, Martinière A, Miao Y, Mongrand S, Müller S, Noack LC, Oda Y, Ott T, Pan X, Pleskot R, Potocky M, Robert S, Rodriguez CS, Simon-Plas F, Russinova E, Van Damme D, Van Norman JM, Weijers D, Yalovsky S, Yang Z, Zelazny E, Gronnier J. Guidelines for naming and studying plasma membrane domains in plants. NATURE PLANTS 2024; 10:1172-1183. [PMID: 39134664 DOI: 10.1038/s41477-024-01742-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 06/14/2024] [Indexed: 08/22/2024]
Abstract
Biological membranes play a crucial role in actively hosting, modulating and coordinating a wide range of molecular events essential for cellular function. Membranes are organized into diverse domains giving rise to dynamic molecular patchworks. However, the very definition of membrane domains has been the subject of continuous debate. For example, in the plant field, membrane domains are often referred to as nanodomains, nanoclusters, microdomains, lipid rafts, membrane rafts, signalling platforms, foci or liquid-ordered membranes without any clear rationale. In the context of plant-microbe interactions, microdomains have sometimes been used to refer to the large area at the plant-microbe interface. Some of these terms have partially overlapping meanings at best, but they are often used interchangeably in the literature. This situation generates much confusion and limits conceptual progress. There is thus an urgent need for us as a scientific community to resolve these semantic and conceptual controversies by defining an unambiguous nomenclature of membrane domains. In this Review, experts in the field get together to provide explicit definitions of plasma membrane domains in plant systems and experimental guidelines for their study. We propose that plasma membrane domains should not be considered on the basis of their size alone but rather according to the biological system being considered, such as the local membrane environment or the entire cell.
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Affiliation(s)
- Yvon Jaillais
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Lyon, France.
| | - Emmanuelle Bayer
- Laboratoire de Biogénèse Membranaire, UMR5200, Université de Bordeaux, CNRS, Villenave d'Ornon, France
| | - Dominique C Bergmann
- Department of Biology, Stanford University, Stanford, CA, USA
- Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA
| | - Miguel A Botella
- Departamento de Biología Molecular y Bioquímica, Instituto de Hortifruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Universidad de Málaga, Málaga, Spain
| | - Yohann Boutté
- Laboratoire de Biogénèse Membranaire, UMR5200, Université de Bordeaux, CNRS, Villenave d'Ornon, France
| | | | - Marie-Cecile Caillaud
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Lyon, France
| | - Véronique Germain
- Laboratoire de Biogénèse Membranaire, UMR5200, Université de Bordeaux, CNRS, Villenave d'Ornon, France
| | - Guido Grossmann
- Institute of Cell and Interaction Biology, CEPLAS Cluster of Excellence on Plant Sciences, Heinrich-Heine Universität Düsseldorf, Düsseldorf, Germany
| | - Ingo Heilmann
- Institute of Biochemistry and Biotechnology, Department of Plant Biochemistry, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Piers A Hemsley
- Division of Plant Sciences, School of Life Sciences, University of Dundee, Dundee, UK
- Cell and Molecular Sciences, James Hutton Institute, Dundee, UK
| | - Charlotte Kirchhelle
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Lyon, France
| | - Alexandre Martinière
- IPSiM, Université de Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Yansong Miao
- School of Biological Sciences, Nanyang Technological University, Singapore, Singapore
| | - Sebastien Mongrand
- Laboratoire de Biogénèse Membranaire, UMR5200, Université de Bordeaux, CNRS, Villenave d'Ornon, France
| | - Sabine Müller
- Department of Biology, Friedrich Alexander Universität Erlangen Nuremberg, Erlangen, Germany
| | - Lise C Noack
- Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Yoshihisa Oda
- Department of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Japan
| | - Thomas Ott
- Cell Biology, Faculty of Biology, University of Freiburg, Freiburg, Germany
- Centre of Integrative Biological Signalling Studies, University of Freiburg, Freiburg, Germany
| | - Xue Pan
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Roman Pleskot
- Institute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic
| | - Martin Potocky
- Institute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic
| | - Stéphanie Robert
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Clara Sanchez Rodriguez
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Campus de Montegancedo UPM, Pozuelo de Alarcón, Spain
| | | | - Eugenia Russinova
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Daniel Van Damme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Jaimie M Van Norman
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, Institute of Integrative Genome Biology, University of California, Riverside, Riverside, CA, USA
| | - Dolf Weijers
- Laboratory of Biochemistry, Wageningen University, Wageningen, the Netherlands
| | - Shaul Yalovsky
- School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel
| | - Zhenbiao Yang
- Institute of Integrative Genome Biology, Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA
- Faculty of Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, China
- Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Enric Zelazny
- IPSiM, Université de Montpellier, CNRS, INRAE, Institut Agro, Montpellier, France
| | - Julien Gronnier
- NanoSignaling Lab, Zentrum für Molekularbiologie der Pflanzen, Eberhard Karls Universität Tübingen, Tübingen, Germany.
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3
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Jing T, Wu Y, Yu Y, Li J, Mu X, Xu L, Wang X, Qi G, Tang J, Wang D, Yang S, Hua J, Gou M. Copine proteins are required for brassinosteroid signaling in maize and Arabidopsis. Nat Commun 2024; 15:2028. [PMID: 38459051 PMCID: PMC10923931 DOI: 10.1038/s41467-024-46289-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 02/21/2024] [Indexed: 03/10/2024] Open
Abstract
Copine proteins are highly conserved and ubiquitously found in eukaryotes, and their indispensable roles in different species were proposed. However, their exact function remains unclear. The phytohormone brassinosteroids (BRs) play vital roles in plant growth, development and environmental responses. A key event in effective BR signaling is the formation of functional BRI1-SERK receptor complex and subsequent transphosphorylation upon ligand binding. Here, we demonstrate that BONZAI (BON) proteins, which are plasma membrane-associated copine proteins, are critical components of BR signaling in both the monocot maize and the dicot Arabidopsis. Biochemical and molecular analyses reveal that BON proteins directly interact with SERK kinases, thereby ensuring effective BRI1-SERK interaction and transphosphorylation. This study advances the knowledge on BR signaling and provides an important target for optimizing valuable agronomic traits, it also opens a way to study steroid hormone signaling and copine proteins of eukaryotes in a broader perspective.
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Affiliation(s)
- Teng Jing
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Yuying Wu
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Yanwen Yu
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Jiankun Li
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Xiaohuan Mu
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Liping Xu
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Xi Wang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing, China
| | - Guang Qi
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Jihua Tang
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
- The Shennong Laboratory, Zhengzhou, Henan, China
| | - Daowen Wang
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China
| | - Shuhua Yang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, Center for Crop Functional Genomics and Molecular Breeding, China Agricultural University, Beijing, China
| | - Jian Hua
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
| | - Mingyue Gou
- State Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, Center for Crop Genome Engineering, College of Agronomy, Henan Agricultural University, Zhengzhou, Henan, China.
- The Shennong Laboratory, Zhengzhou, Henan, China.
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4
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Pain C, Tynan C, Botchway SW, Kriechbaumer V. Variable-Angle Epifluorescence Microscopy for Single-Particle Tracking in the Plant ER. Methods Mol Biol 2024; 2772:273-283. [PMID: 38411821 DOI: 10.1007/978-1-0716-3710-4_20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
Single-particle tracking (SPT) of biomolecules in the plant endoplasmic reticulum has the potential to inform on the formation of protein-protein complexes, metabolons, and the transport of molecules through both the ER membrane and lumen. Plant cells are particularly challenging for observing and tracking single molecules due to their unique structure, size, and considerable autofluorescence. However, by using variable-angle or highly inclined epifluorescence microscopy (VAEM) and transient expression in tobacco, it is possible to observe single-particle dynamics in the ER. Selecting the appropriate fluorophore, and ensuring the correct fluorophore density in the ER, is essential for successful SPT. By using tuneable fluorophores, which can be photoconverted and photoactivated, it is possible to vary the density of visible fluorophores in the ER dynamically. Here we describe methods to prepare plant samples for VAEM and two methods for determining and analyzing single-particle tracks from VAEM time series.
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Affiliation(s)
- Charlotte Pain
- Endomembrane Structure and Function Research Group, Department of Biological and Medical Sciences, Oxford Brookes University, Oxford, UK
| | - Christopher Tynan
- Central Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Research Complex at Harwell, Didcot, UK
| | - Stanley W Botchway
- Central Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Research Complex at Harwell, Didcot, UK
| | - Verena Kriechbaumer
- Endomembrane Structure and Function Research Group, Department of Biological and Medical Sciences, Oxford Brookes University, Oxford, UK.
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5
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Gronnier J, Franck CM, Stegmann M, DeFalco TA, Abarca A, von Arx M, Dünser K, Lin W, Yang Z, Kleine-Vehn J, Ringli C, Zipfel C. Regulation of immune receptor kinase plasma membrane nanoscale organization by a plant peptide hormone and its receptors. eLife 2022; 11:74162. [PMID: 34989334 PMCID: PMC8791635 DOI: 10.7554/elife.74162] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 01/05/2022] [Indexed: 01/09/2023] Open
Abstract
Spatial partitioning is a propensity of biological systems orchestrating cell activities in space and time. The dynamic regulation of plasma membrane nano-environments has recently emerged as a key fundamental aspect of plant signaling, but the molecular components governing it are still mostly unclear. The receptor kinase FERONIA (FER) controls ligand-induced complex formation of the immune receptor kinase FLAGELLIN SENSING 2 (FLS2) with its co-receptor BRASSINOSTEROID-INSENSITIVE 1-ASSOCIATED KINASE 1 (BAK1), and perception of the endogenous peptide hormone RAPID ALKALANIZATION FACTOR 23 (RALF23) by FER inhibits immunity. Here, we show that FER regulates the plasma membrane nanoscale organization of FLS2 and BAK1. Our study demonstrates that akin to FER, leucine-rich repeat (LRR) extensin proteins (LRXs) contribute to RALF23 responsiveness and regulate BAK1 nanoscale organization and immune signaling. Furthermore, RALF23 perception leads to rapid modification of FLS2 and BAK1 nanoscale organization, and its inhibitory activity on immune signaling relies on FER kinase activity. Our results suggest that perception of RALF peptides by FER and LRXs actively modulates plasma membrane nanoscale organization to regulate cell surface signaling by other ligand-binding receptor kinases.
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Affiliation(s)
- Julien Gronnier
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland.,The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Christina M Franck
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland
| | - Martin Stegmann
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Thomas A DeFalco
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland.,The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Alicia Abarca
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland
| | - Michelle von Arx
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland
| | - Kai Dünser
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences Vienna, Vienna, Austria
| | - Wenwei Lin
- FAFU-UCR Joint Center for Horticultural Biology and Metabolomics Center, Haixia, Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Zhenbiao Yang
- FAFU-UCR Joint Center for Horticultural Biology and Metabolomics Center, Haixia, Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Jürgen Kleine-Vehn
- Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences Vienna, Vienna, Austria
| | - Christoph Ringli
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland
| | - Cyril Zipfel
- Institute of Plant and Microbial Biology and Zurich-Basel Plant Science Center, University of Zurich, Zurich, Switzerland.,The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
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6
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Ortiz-Morea FA, He P, Shan L, Russinova E. It takes two to tango - molecular links between plant immunity and brassinosteroid signalling. J Cell Sci 2020; 133:133/22/jcs246728. [PMID: 33239345 DOI: 10.1242/jcs.246728] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
In response to the invasion of microorganisms, plants actively balance their resources for growth and defence, thus ensuring their survival. The regulatory mechanisms underlying plant immunity and growth operate through complex networks, in which the brassinosteroid phytohormone is one of the central players. In the past decades, a growing number of studies have revealed a multi-layered crosstalk between brassinosteroid-mediated growth and plant immunity. In this Review, by means of the tango metaphor, we immerse ourselves into the intimate relationship between brassinosteroid and plant immune signalling pathways that is tailored by the lifestyle of the pathogen and modulated by other phytohormones. The plasma membrane is the unique stage where brassinosteroid and immune signals are dynamically integrated and where compartmentalization into nanodomains that host distinct protein consortia is crucial for the dance. Shared downstream signalling components and transcription factors relay the tango play to the nucleus to activate the plant defence response and other phytohormonal signalling pathways for the finale. Understanding how brassinosteroid and immune signalling pathways are integrated in plants will help develop strategies to minimize the growth-defence trade-off, a key challenge for crop improvement.
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Affiliation(s)
- Fausto Andres Ortiz-Morea
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA .,Amazonian Research Center Cimaz-Macagual, University of the Amazon, Florencia 180002622, Colombia
| | - Ping He
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA
| | - Libo Shan
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA
| | - Eugenia Russinova
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium .,Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
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7
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Wang H, Song S, Cheng H, Tan YW. State-of-the-Art Technologies for Understanding Brassinosteroid Signaling Networks. Int J Mol Sci 2020; 21:E8179. [PMID: 33142942 PMCID: PMC7662629 DOI: 10.3390/ijms21218179] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 10/20/2020] [Accepted: 10/22/2020] [Indexed: 01/02/2023] Open
Abstract
Brassinosteroids, the steroid hormones of plants, control physiological and developmental processes through its signaling pathway. The major brassinosteroid signaling network components, from the receptor to transcription factors, have been identified in the past two decades. The development of biotechnologies has driven the identification of novel brassinosteroid signaling components, even revealing several crosstalks between brassinosteroid and other plant signaling pathways. Herein, we would like to summarize the identification and improvement of several representative brassinosteroid signaling components through the development of new technologies, including brassinosteroid-insensitive 1 (BRI1), BRI1-associated kinase 1 (BAK1), BR-insensitive 2 (BIN2), BRI1 kinase inhibitor 1 (BKI1), BRI1-suppressor 1 (BSU1), BR signaling kinases (BSKs), BRI1 ethyl methanesulfonate suppressor 1 (BES1), and brassinazole resistant 1 (BZR1). Furthermore, improvement of BR signaling knowledge, such as the function of BKI1, BES1 and its homologous through clustered regularly interspaced short palindromic repeats (CRISPR), the regulation of BIN2 through single-molecule methods, and the new in vivo interactors of BIN2 identified by proximity labeling are described. Among these technologies, recent advanced methods proximity labeling and single-molecule methods will be reviewed in detail to provide insights to brassinosteroid and other phytohormone signaling pathway studies.
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Affiliation(s)
- Haijiao Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475001, China;
| | - Song Song
- Department of Basic Courses, Zhejiang University of Water Resources and Electric Power, Hangzhou 310018, China;
| | - Huaqiang Cheng
- State Key Laboratory of Surface Physics, Multiscale Research Institute of Complex Systems, Department of Physics, Fudan University, Shanghai 200433, China;
| | - Yan-Wen Tan
- State Key Laboratory of Surface Physics, Multiscale Research Institute of Complex Systems, Department of Physics, Fudan University, Shanghai 200433, China;
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8
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Qi X, Yoshinari A, Bai P, Maes M, Zeng SM, Torii KU. The manifold actions of signaling peptides on subcellular dynamics of a receptor specify stomatal cell fate. eLife 2020; 9:58097. [PMID: 32795387 PMCID: PMC7470842 DOI: 10.7554/elife.58097] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 08/14/2020] [Indexed: 12/19/2022] Open
Abstract
Receptor endocytosis is important for signal activation, transduction, and deactivation. However, how a receptor interprets conflicting signals to adjust cellular output is not clearly understood. Using genetic, cell biological, and pharmacological approaches, we report here that ERECTA-LIKE1 (ERL1), the major receptor restricting plant stomatal differentiation, undergoes dynamic subcellular behaviors in response to different EPIDERMAL PATTERNING FACTOR (EPF) peptides. Activation of ERL1 by EPF1 induces rapid ERL1 internalization via multivesicular bodies/late endosomes to vacuolar degradation, whereas ERL1 constitutively internalizes in the absence of EPF1. The co-receptor, TOO MANY MOUTHS is essential for ERL1 internalization induced by EPF1 but not by EPFL6. The peptide antagonist, Stomagen, triggers retention of ERL1 in the endoplasmic reticulum, likely coupled with reduced endocytosis. In contrast, the dominant-negative ERL1 remained dysfunctional in ligand-induced subcellular trafficking. Our study elucidates that multiple related yet unique peptides specify cell fate by deploying the differential subcellular dynamics of a single receptor.
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Affiliation(s)
- Xingyun Qi
- Howard Hughes Medical Institute and Department of Biology, University of Washington, Seattle, United States
| | - Akira Yoshinari
- Institute of Transformative Biomolecules (WPI-ITbM), Nagoya University, Aichi, Japan
| | - Pengfei Bai
- Howard Hughes Medical Institute and Department of Molecular Biosciences, The University of Texas at Austin, Austin, United States
| | - Michal Maes
- Howard Hughes Medical Institute and Department of Biology, University of Washington, Seattle, United States
| | - Scott M Zeng
- Howard Hughes Medical Institute and Department of Molecular Biosciences, The University of Texas at Austin, Austin, United States.,Department of Physics, University of Washington, Seattle, United States
| | - Keiko U Torii
- Howard Hughes Medical Institute and Department of Biology, University of Washington, Seattle, United States.,Institute of Transformative Biomolecules (WPI-ITbM), Nagoya University, Aichi, Japan.,Howard Hughes Medical Institute and Department of Molecular Biosciences, The University of Texas at Austin, Austin, United States
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9
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Mao J, Li J. Regulation of Three Key Kinases of Brassinosteroid Signaling Pathway. Int J Mol Sci 2020; 21:E4340. [PMID: 32570783 PMCID: PMC7352359 DOI: 10.3390/ijms21124340] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 06/15/2020] [Accepted: 06/16/2020] [Indexed: 02/08/2023] Open
Abstract
Brassinosteroids (BRs) are important plant growth hormones that regulate a wide range of plant growth and developmental processes. The BR signals are perceived by two cell surface-localized receptor kinases, Brassinosteroid-Insensitive1 (BRI1) and BRI1-Associated receptor Kinase (BAK1), and reach the nucleus through two master transcription factors, bri1-EMS suppressor1 (BES1) and Brassinazole-resistant1 (BZR1). The intracellular transmission of the BR signals from BRI1/BAK1 to BES1/BZR1 is inhibited by a constitutively active kinase Brassinosteroid-Insensitive2 (BIN2) that phosphorylates and negatively regulates BES1/BZR1. Since their initial discoveries, further studies have revealed a plethora of biochemical and cellular mechanisms that regulate their protein abundance, subcellular localizations, and signaling activities. In this review, we provide a critical analysis of the current literature concerning activation, inactivation, and other regulatory mechanisms of three key kinases of the BR signaling cascade, BRI1, BAK1, and BIN2, and discuss some unresolved controversies and outstanding questions that require further investigation.
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Affiliation(s)
- Juan Mao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agriculture University, Guangzhou 510642, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Jianming Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agriculture University, Guangzhou 510642, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
- Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
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10
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Schlöffel MA, Salzer A, Wan WL, van Wijk R, Del Corvo R, Šemanjski M, Symeonidi E, Slaby P, Kilian J, Maček B, Munnik T, Gust AA. The BIR2/BIR3-Associated Phospholipase Dγ1 Negatively Regulates Plant Immunity. PLANT PHYSIOLOGY 2020; 183:371-384. [PMID: 32152212 PMCID: PMC7210654 DOI: 10.1104/pp.19.01292] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 02/20/2020] [Indexed: 05/05/2023]
Abstract
Plants have evolved effective strategies to defend themselves against pathogen invasion. Starting from the plasma membrane with the recognition of microbe-associated molecular patterns (MAMPs) via pattern recognition receptors, internal cellular signaling pathways are induced to ultimately fend off the attack. Phospholipase D (PLD) hydrolyzes membrane phospholipids to produce phosphatidic acid (PA), which has been proposed to play a second messenger role in immunity. The Arabidopsis (Arabidopsis thaliana) PLD family consists of 12 members, and for some of these, a specific function in resistance toward a subset of pathogens has been shown. We demonstrate here that Arabidopsis PLDγ1, but not its close homologs PLDγ2 and PLDγ3, is specifically involved in plant immunity. Genetic inactivation of PLDγ1 resulted in increased resistance toward the virulent bacterium Pseudomonas syringae pv. tomato DC3000 and the necrotrophic fungus Botrytis cinerea As pldγ1 mutant plants responded with elevated levels of reactive oxygen species to MAMP treatment, a negative regulatory function for this PLD isoform is proposed. Importantly, PA levels in pldγ1 mutants were not affected compared to stressed wild-type plants, suggesting that alterations in PA levels are not likely the cause for the enhanced immunity in the pldγ1 line. Instead, the plasma-membrane-attached PLDγ1 protein colocalized and associated with the BAK1-INTERACTING RECEPTOR-LIKE KINASES BIR2 and BIR3, which are known negative regulators of pattern-triggered immunity. Moreover, complex formation of PLDγ1 and BIR2 was further promoted upon MAMP treatment. Hence, we propose that PLDγ1 acts as a negative regulator of plant immune responses in complex with immunity-related proteins BIR2 and BIR3.
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Affiliation(s)
- Maria A Schlöffel
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Andrea Salzer
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Wei-Lin Wan
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Ringo van Wijk
- Swammerdam Institute for Life Sciences, Section Plant Cell Biology, University of Amsterdam, 1098 XH Amsterdam, The Netherlands
| | - Raffaele Del Corvo
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Maja Šemanjski
- Proteome Center Tübingen, University of Tübingen, 72076 Tübingen, Germany
| | - Efthymia Symeonidi
- Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany
| | - Peter Slaby
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Joachim Kilian
- Analytics Unit, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
| | - Boris Maček
- Proteome Center Tübingen, University of Tübingen, 72076 Tübingen, Germany
| | - Teun Munnik
- Swammerdam Institute for Life Sciences, Section Plant Cell Biology, University of Amsterdam, 1098 XH Amsterdam, The Netherlands
| | - Andrea A Gust
- Department of Plant Biochemistry, Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany
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11
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Jaillais Y, Ott T. The Nanoscale Organization of the Plasma Membrane and Its Importance in Signaling: A Proteolipid Perspective. PLANT PHYSIOLOGY 2020; 182:1682-1696. [PMID: 31857424 PMCID: PMC7140965 DOI: 10.1104/pp.19.01349] [Citation(s) in RCA: 84] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 12/09/2019] [Indexed: 05/12/2023]
Abstract
Plasma membranes provide a highly selective environment for a large number of transmembrane and membrane-associated proteins. Whereas lateral movement of proteins in this lipid bilayer is possible, it is rather limited in turgid and cell wall-shielded plant cells. However, membrane-resident signaling processes occur on subsecond scales that cannot be explained by simple diffusion models. Accordingly, several receptors and other membrane-associated proteins are organized and functional in membrane nanodomains. Although the general presence of membrane nanodomains has become widely accepted as fact, fundamental functional aspects, the roles of individual lipid species and their interplay with proteins, and aspects of nanodomain maintenance and persistence remain poorly understood. Here, we review the current knowledge of nanodomain organization and function, with a particular focus on signaling processes involving proteins, lipids, and their interactions. Furthermore, we propose new and hypothetical aspects of plant membrane biology that we consider important for future research.
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Affiliation(s)
- Yvon Jaillais
- Laboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, F-69342 Lyon, France
| | - Thomas Ott
- Cell Biology, Faculty of Biology, Centre for Integrative Biological Signalling Studies (CIBSS), University of Freiburg, 79104 Freiburg, Germany
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12
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Großeholz R, Feldman-Salit A, Wanke F, Schulze S, Glöckner N, Kemmerling B, Harter K, Kummer U. Specifying the role of BAK1-interacting receptor-like kinase 3 in brassinosteroid signaling. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2020; 62:456-469. [PMID: 30912278 DOI: 10.1111/jipb.12803] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Accepted: 02/27/2019] [Indexed: 05/26/2023]
Abstract
Brassinosteroids (BR) are involved in the control of several developmental processes ranging from root elongation to senescence and adaptation to environmental cues. Thus, BR perception and signaling have to be precisely regulated. One regulator is BRI1-associated kinase 1 (BAK1)-interacting receptor-like kinase 3 (BIR3). In the absence of BR, BIR3 forms complexes with BR insensitive 1 (BRI1) and BAK1. However, the biophysical and energetic requirements for complex formation in the absence of the ligand have yet to be determined. Using computational modeling, we simulated the potential complexes between the cytoplasmic domains of BAK1, BRI1 and BIR3. Our calculations and experimental data confirm the interaction of BIR3 with BAK1 and BRI1, with the BAK1 BIR3 interaction clearly favored. Furthermore, we demonstrate that BIR3 and BRI1 share the same interaction site with BAK1. This suggests a competition between BIR3 and BRI1 for binding to BAK1, which results in preferential binding of BIR3 to BAK1 in the absence of the ligand thereby preventing the active participation of BAK1 in BR signaling. Our model also suggests that BAK1 and BRI1 can interact even while BAK1 is in complex with BIR3 at an additional binding site of BAK1 that does not allow active BR signaling.
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Affiliation(s)
- Ruth Großeholz
- Centre for Organismal Studies/ BioQuant, Heidelberg University, 69120, Heidelberg, Germany
| | - Anna Feldman-Salit
- Centre for Organismal Studies/ BioQuant, Heidelberg University, 69120, Heidelberg, Germany
| | - Friederike Wanke
- Center for Plant Molecular Biology (ZMBP), University Tübingen, 72076, Tübingen, Germany
| | - Sarina Schulze
- Center for Plant Molecular Biology (ZMBP), University Tübingen, 72076, Tübingen, Germany
| | - Nina Glöckner
- Center for Plant Molecular Biology (ZMBP), University Tübingen, 72076, Tübingen, Germany
| | - Birgit Kemmerling
- Center for Plant Molecular Biology (ZMBP), University Tübingen, 72076, Tübingen, Germany
| | - Klaus Harter
- Center for Plant Molecular Biology (ZMBP), University Tübingen, 72076, Tübingen, Germany
| | - Ursula Kummer
- Centre for Organismal Studies/ BioQuant, Heidelberg University, 69120, Heidelberg, Germany
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13
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Pain C, Kriechbaumer V. Defining the dance: quantification and classification of endoplasmic reticulum dynamics. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:1757-1762. [PMID: 31811712 PMCID: PMC7094074 DOI: 10.1093/jxb/erz543] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The availability of quantification methods for subcellular organelle dynamic analysis has increased rapidly over the last 20 years. The application of these techniques to contiguous subcellular structures that exhibit dynamic remodelling over a range of scales and orientations is challenging, as quantification of 'movement' rarely corresponds to traditional, qualitative classifications of types of organelle movement. The plant endoplasmic reticulum represents a particular challenge for dynamic quantification as it itself is an entirely contiguous organelle that is in a constant state of flux and gross remodelling, controlled by the actinomyosin cytoskeleton.
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Affiliation(s)
- Charlotte Pain
- Oxford Brookes University, Faculty of Health and Life Sciences, Gipsy Lane, Plant Cell Biology, Oxford, UK
| | - Verena Kriechbaumer
- Oxford Brookes University, Faculty of Health and Life Sciences, Gipsy Lane, Plant Cell Biology, Oxford, UK
- Correspondence:
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14
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Wolf S. Deviating from the Beaten Track: New Twists in Brassinosteroid Receptor Function. Int J Mol Sci 2020; 21:ijms21051561. [PMID: 32106564 PMCID: PMC7084826 DOI: 10.3390/ijms21051561] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 02/21/2020] [Accepted: 02/22/2020] [Indexed: 12/15/2022] Open
Abstract
A key feature of plants is their plastic development tailored to the environmental conditions. To integrate environmental signals with genetic growth regulatory programs, plants rely on a number of hormonal pathways, which are intimately connected at multiple levels. Brassinosteroids (BRs), a class of plant sterol hormones, are perceived by cell surface receptors and trigger responses instrumental in tailoring developmental programs to environmental cues. Arguably, BR signalling is one of the best-characterized plant signalling pathways, and the molecular composition of the core signal transduction cascade seems clear. However, BR research continues to reveal new twists to re-shape our view on this key signalling circuit. Here, exciting novel findings pointing to the plasma membrane as a key site for BR signalling modulation and integration with other pathways are reviewed and new inputs into the BR signalling pathway and emerging “non-canonical” functions of the BR receptor complex are highlighted. Together, this new evidence underscores the complexity of plant signalling integration and serves as a reminder that highly-interconnected signalling pathways frequently comprise non-linear aspects which are difficult to convey in classical conceptual models.
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Affiliation(s)
- Sebastian Wolf
- Centre for Organismal Studies (COS) Heidelberg, INF230, 69120 Heidelberg, Germany
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15
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The cell wall regulates dynamics and size of plasma-membrane nanodomains in Arabidopsis. Proc Natl Acad Sci U S A 2019; 116:12857-12862. [PMID: 31182605 PMCID: PMC6601011 DOI: 10.1073/pnas.1819077116] [Citation(s) in RCA: 76] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Plant plasma-membrane (PM) proteins are involved in several vital processes, such as detection of pathogens, solute transport, and cellular signaling. For these proteins to function effectively there needs to be structure within the PM allowing, for example, proteins in the same signaling cascade to be spatially organized. Here we demonstrate that several proteins with divergent functions are located in clusters of differing size in the membrane using subdiffraction-limited Airyscan confocal microscopy. Single particle tracking reveals that these proteins move at different rates within the membrane. Actin and microtubule cytoskeletons appear to significantly regulate the mobility of one of these proteins (the pathogen receptor FLS2) and we further demonstrate that the cell wall is critical for the regulation of cluster size by quantifying single particle dynamics of proteins with key roles in morphogenesis (PIN3) and pathogen perception (FLS2). We propose a model in which the cell wall and cytoskeleton are pivotal for regulation of protein cluster size and dynamics, thereby contributing to the formation and functionality of membrane nanodomains.
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16
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Mamode Cassim A, Gouguet P, Gronnier J, Laurent N, Germain V, Grison M, Boutté Y, Gerbeau-Pissot P, Simon-Plas F, Mongrand S. Plant lipids: Key players of plasma membrane organization and function. Prog Lipid Res 2018; 73:1-27. [PMID: 30465788 DOI: 10.1016/j.plipres.2018.11.002] [Citation(s) in RCA: 130] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 11/07/2018] [Accepted: 11/09/2018] [Indexed: 12/29/2022]
Abstract
The plasma membrane (PM) is the biological membrane that separates the interior of all cells from the outside. The PM is constituted of a huge diversity of proteins and lipids. In this review, we will update the diversity of molecular species of lipids found in plant PM. We will further discuss how lipids govern global properties of the plant PM, explaining that plant lipids are unevenly distributed and are able to organize PM in domains. From that observation, it emerges a complex picture showing a spatial and multiscale segregation of PM components. Finally, we will discuss how lipids are key players in the function of PM in plants, with a particular focus on plant-microbe interaction, transport and hormone signaling, abiotic stress responses, plasmodesmata function. The last chapter is dedicated to the methods that the plant membrane biology community needs to develop to get a comprehensive understanding of membrane organization in plants.
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Affiliation(s)
- Adiilah Mamode Cassim
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Paul Gouguet
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Julien Gronnier
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Nelson Laurent
- Agroécologie, AgroSup Dijon, INRA, University of Bourgogne Franche-Comté, F-21000 Dijon, ERL 6003 CNRS, Dijon, France
| | - Véronique Germain
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Magali Grison
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Yohann Boutté
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Patricia Gerbeau-Pissot
- Agroécologie, AgroSup Dijon, INRA, University of Bourgogne Franche-Comté, F-21000 Dijon, ERL 6003 CNRS, Dijon, France
| | - Françoise Simon-Plas
- Agroécologie, AgroSup Dijon, INRA, University of Bourgogne Franche-Comté, F-21000 Dijon, ERL 6003 CNRS, Dijon, France.
| | - Sébastien Mongrand
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France.
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17
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Gronnier J, Gerbeau-Pissot P, Germain V, Mongrand S, Simon-Plas F. Divide and Rule: Plant Plasma Membrane Organization. TRENDS IN PLANT SCIENCE 2018; 23:899-917. [PMID: 30174194 DOI: 10.1016/j.tplants.2018.07.007] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Revised: 07/09/2018] [Accepted: 07/13/2018] [Indexed: 05/24/2023]
Abstract
Since the publication of the fluid mosaic as a relevant model for biological membranes, accumulating evidence has revealed the outstanding complexity of the composition and organization of the plant plasma membrane (PM). Powerful new methodologies have uncovered the remarkable multiscale and multicomponent heterogeneity of PM subcompartmentalization, and this is emerging as a general trait with different features and properties. It is now evident that the dynamics of such a complex organization are intrinsically related to signaling pathways that regulate key physiological processes. Listing and linking recent progress in precisely qualifying these heterogeneities will help to draw an integrated picture of the plant PM. Understanding the key principles governing such a complex dynamic organization will contribute to deciphering the crucial role of the PM in cell physiology.
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Affiliation(s)
- Julien Gronnier
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche (UMR) 5200, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Bordeaux, France; Present address: Laboratory of Cyril Zipfel, Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland
| | - Patricia Gerbeau-Pissot
- Agroécologie, Institut National Supérieur des Sciences Agronomiques, de l'Alimentation, et de l'Environnement (AgroSup) Dijon, CNRS, Institut National de la Recherche Agronomique (INRA), Université Bourgogne Franche-Comté, Dijon, France
| | - Véronique Germain
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche (UMR) 5200, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Bordeaux, France
| | - Sébastien Mongrand
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche (UMR) 5200, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Bordeaux, France; These authors contributed equally to this work
| | - Françoise Simon-Plas
- Agroécologie, Institut National Supérieur des Sciences Agronomiques, de l'Alimentation, et de l'Environnement (AgroSup) Dijon, CNRS, Institut National de la Recherche Agronomique (INRA), Université Bourgogne Franche-Comté, Dijon, France; These authors contributed equally to this work.
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18
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Gruszka D. Crosstalk of the Brassinosteroid Signalosome with Phytohormonal and Stress Signaling Components Maintains a Balance between the Processes of Growth and Stress Tolerance. Int J Mol Sci 2018; 19:ijms19092675. [PMID: 30205610 PMCID: PMC6163518 DOI: 10.3390/ijms19092675] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 08/22/2018] [Accepted: 09/07/2018] [Indexed: 12/25/2022] Open
Abstract
Brassinosteroids (BRs) are a class of phytohormones, which regulate various processes during plant life cycle. Intensive studies conducted with genetic, physiological and molecular approaches allowed identification of various components participating in the BR signaling—from the ligand perception, through cytoplasmic signal transduction, up to the BR-dependent gene expression, which is regulated by transcription factors and chromatin modifying enzymes. The identification of new components of the BR signaling is an ongoing process, however an emerging view of the BR signalosome indicates that this process is interconnected at various stages with other metabolic pathways. The signaling crosstalk is mediated by the BR signaling proteins, which function as components of the transmembrane BR receptor, by a cytoplasmic kinase playing a role of the major negative regulator of the BR signaling, and by the transcription factors, which regulate the BR-dependent gene expression and form a complicated regulatory system. This molecular network of interdependencies allows a balance in homeostasis of various phytohormones to be maintained. Moreover, the components of the BR signalosome interact with factors regulating plant reactions to environmental cues and stress conditions. This intricate network of interactions enables a rapid adaptation of plant metabolism to constantly changing environmental conditions.
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Affiliation(s)
- Damian Gruszka
- Department of Genetics, Faculty of Biology and Environment Protection, University of Silesia, Jagiellonska 28, 40-032 Katowice, Poland.
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19
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Claus LAN, Savatin DV, Russinova E. The crossroads of receptor-mediated signaling and endocytosis in plants. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2018; 60:827-840. [PMID: 29877613 DOI: 10.1111/jipb.12672] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 06/05/2018] [Indexed: 05/20/2023]
Abstract
Plants deploy numerous plasma membrane receptors to sense and rapidly react to environmental changes. Correct localization and adequate protein levels of the cell-surface receptors are critical for signaling activation and modulation of plant development and defense against pathogens. After ligand binding, receptors are internalized for degradation and signaling attenuation. However, one emerging notion is that the ligand-induced endocytosis of receptor complexes is important for the signal duration, amplitude, and specificity. Recently, mutants of major endocytosis players, including clathrin and dynamin, have been shown to display defects in activation of a subset of signal transduction pathways, implying that signaling in plants might not be solely restricted to the plasma membrane. Here, we summarize the up-to-date knowledge of receptor complex endocytosis and its effect on the signaling outcome, in the context of plant development and immunity.
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Affiliation(s)
- Lucas Alves Neubus Claus
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Daniel V Savatin
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Eugenia Russinova
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
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20
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Grosjean K, Der C, Robert F, Thomas D, Mongrand S, Simon-Plas F, Gerbeau-Pissot P. Interactions between lipids and proteins are critical for organization of plasma membrane-ordered domains in tobacco BY-2 cells. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3545-3557. [PMID: 29722895 PMCID: PMC6022670 DOI: 10.1093/jxb/ery152] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Accepted: 04/16/2018] [Indexed: 05/20/2023]
Abstract
The laterally heterogeneous plant plasma membrane (PM) is organized into finely controlled specialized areas that include membrane-ordered domains. Recently, the spatial distribution of such domains within the PM has been identified as playing a key role in cell responses to environmental challenges. To examine membrane order at a local level, BY-2 tobacco suspension cell PMs were labelled with an environment-sensitive probe (di-4-ANEPPDHQ). Four experimental models were compared to identify mechanisms and cell components involved in short-term (1 h) maintenance of the ordered domain organization in steady-state cell PMs: modulation of the cytoskeleton or the cell wall integrity of tobacco BY-2 cells; and formation of giant vesicles using either a lipid mixture of tobacco BY-2 cell PMs or the original lipid and protein combinations of the tobacco BY-2 cell PM. Whilst inhibiting phosphorylation or disrupting either the cytoskeleton or the cell wall had no observable effects, we found that lipids and proteins significantly modified both the abundance and spatial distribution of ordered domains. This indicates the involvement of intrinsic membrane components in the local physical state of the plant PM. Our findings support a major role for the 'lipid raft' model, defined as the sterol-dependent ordered assemblies of specific lipids and proteins in plant PM organization.
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Affiliation(s)
- Kevin Grosjean
- Agroécologie, AgroSup Dijon, CNRS, INRA, Université Bourgogne Franche-Comté, Dijon, France
| | - Christophe Der
- Agroécologie, AgroSup Dijon, CNRS, INRA, Université Bourgogne Franche-Comté, Dijon, France
| | - Franck Robert
- Agroécologie, AgroSup Dijon, CNRS, INRA, Université Bourgogne Franche-Comté, Dijon, France
| | - Dominique Thomas
- Agroécologie, AgroSup Dijon, CNRS, INRA, Université Bourgogne Franche-Comté, Dijon, France
| | - Sébastien Mongrand
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche UMR, CNRS, Université de Bordeaux, Bordeaux, France
| | - Françoise Simon-Plas
- Agroécologie, AgroSup Dijon, CNRS, INRA, Université Bourgogne Franche-Comté, Dijon, France
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21
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Grossmann G, Krebs M, Maizel A, Stahl Y, Vermeer JEM, Ott T. Green light for quantitative live-cell imaging in plants. J Cell Sci 2018; 131:jcs.209270. [PMID: 29361538 DOI: 10.1242/jcs.209270] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Plants exhibit an intriguing morphological and physiological plasticity that enables them to thrive in a wide range of environments. To understand the cell biological basis of this unparalleled competence, a number of methodologies have been adapted or developed over the last decades that allow minimal or non-invasive live-cell imaging in the context of tissues. Combined with the ease to generate transgenic reporter lines in specific genetic backgrounds or accessions, we are witnessing a blooming in plant cell biology. However, the imaging of plant cells entails a number of specific challenges, such as high levels of autofluorescence, light scattering that is caused by cell walls and their sensitivity to environmental conditions. Quantitative live-cell imaging in plants therefore requires adapting or developing imaging techniques, as well as mounting and incubation systems, such as micro-fluidics. Here, we discuss some of these obstacles, and review a number of selected state-of-the-art techniques, such as two-photon imaging, light sheet microscopy and variable angle epifluorescence microscopy that allow high performance and minimal invasive live-cell imaging in plants.
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Affiliation(s)
- Guido Grossmann
- Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 230, 69120 Heidelberg, Germany.,Excellence Cluster CellNetworks, Heidelberg University, 69120 Heidelberg, Germany
| | - Melanie Krebs
- Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 230, 69120 Heidelberg, Germany
| | - Alexis Maizel
- Centre for Organismal Studies (COS), Heidelberg University, Im Neuenheimer Feld 230, 69120 Heidelberg, Germany
| | - Yvonne Stahl
- Institute for Developmental Genetics, Heinrich-Heine University, Universitätsstr. 1, 40225 Düsseldorf, Germany
| | - Joop E M Vermeer
- Laboratory for Cell Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Thomas Ott
- Faculty of Biology, Cell Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany
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22
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Padmanabha Das KM, Wechselberger L, Liziczai M, De la Rosa Rodriguez M, Grabner GF, Heier C, Viertlmayr R, Radler C, Lichtenegger J, Zimmermann R, Borst JW, Zechner R, Kersten S, Oberer M. Hypoxia-inducible lipid droplet-associated protein inhibits adipose triglyceride lipase. J Lipid Res 2018; 59:531-541. [PMID: 29326160 PMCID: PMC5832925 DOI: 10.1194/jlr.m082388] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Revised: 01/10/2018] [Indexed: 11/29/2022] Open
Abstract
Elaborate control mechanisms of intracellular triacylglycerol (TAG) breakdown are critically involved in the maintenance of energy homeostasis. Hypoxia-inducible lipid droplet-associated protein (HILPDA)/hypoxia-inducible gene-2 (Hig-2) has been shown to affect intracellular TAG levels, yet, the underlying molecular mechanisms are unclear. Here, we show that HILPDA inhibits adipose triglyceride lipase (ATGL), the enzyme catalyzing the first step of intracellular TAG hydrolysis. HILPDA shares structural similarity with G0/G1 switch gene 2 (G0S2), an established inhibitor of ATGL. HILPDA inhibits ATGL activity in a dose-dependent manner with an IC50 value of ∼2 μM. ATGL inhibition depends on the direct physical interaction of both proteins and involves the N-terminal hydrophobic region of HILPDA and the N-terminal patatin domain-containing segment of ATGL. Finally, confocal microscopy combined with Förster resonance energy transfer-fluorescence lifetime imaging microscopy analysis indicated that HILPDA and ATGL colocalize and physically interact intracellularly. These findings provide a rational biochemical explanation for the tissue-specific increased TAG accumulation in HILPDA-overexpressing transgenic mouse models.
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Affiliation(s)
| | - Lisa Wechselberger
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | - Márton Liziczai
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | | | - Gernot F Grabner
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | - Christoph Heier
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | - Roland Viertlmayr
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | - Claudia Radler
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | - Jörg Lichtenegger
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria
| | - Robert Zimmermann
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria.,BioTechMed-Graz, 8010 Graz, Austria
| | - Jan Willem Borst
- Laboratory of Biochemistry and Microspectroscopy Research Facility, Wageningen University, Wageningen, The Netherlands
| | - Rudolf Zechner
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria.,BioTechMed-Graz, 8010 Graz, Austria
| | - Sander Kersten
- Division of Human Nutrition University of Graz, 8010 Graz, Austria
| | - Monika Oberer
- Institute of Molecular Biosciences, University of Graz, 8010 Graz, Austria .,BioTechMed-Graz, 8010 Graz, Austria
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23
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Ott T. Membrane nanodomains and microdomains in plant-microbe interactions. CURRENT OPINION IN PLANT BIOLOGY 2017; 40:82-88. [PMID: 28865975 DOI: 10.1016/j.pbi.2017.08.008] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Revised: 07/17/2017] [Accepted: 08/18/2017] [Indexed: 05/26/2023]
Abstract
During plant-microbe interactions, host cells need to keep stringent control over the approaching pathogens and symbionts. This requires specific spatio-temporal assemblies of pattern recognition receptors and other complex constituents and a strict physical separation of genetically overlapping pathways. Increasing evidence suggests that this is, at least partially, achieved by the formation of nanometer scale membrane platforms that might act as signaling hubs. These and other larger-scale sub-compartments have been termed 'membrane rafts', 'nanodomains' and 'microdomains'. This review focuses on recent advances in understanding these nano-scale signaling platforms during plant-microbe interactions and proposes a common definition meant to facilitate the precise discrimination between different types of membrane domains in the future.
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Affiliation(s)
- Thomas Ott
- University of Freiburg, Faculty of Biology, Cell Biology, Schänzlestr. 1, 79104 Freiburg, Germany.
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24
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Burkart RC, Stahl Y. Dynamic complexity: plant receptor complexes at the plasma membrane. CURRENT OPINION IN PLANT BIOLOGY 2017; 40:15-21. [PMID: 28715768 DOI: 10.1016/j.pbi.2017.06.016] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2017] [Revised: 06/22/2017] [Accepted: 06/24/2017] [Indexed: 05/23/2023]
Abstract
Plant receptor complexes at the cell surface perceive many different external and internal signalling molecules and relay these signals into the cell to regulate development, growth and immunity. Recent progress in the analyses of receptor complexes using different live cell imaging approaches have shown that receptor complex formation and composition are dynamic and take place at specific microdomains at the plasma membrane. In this review we focus on three prominent examples of Arabidopsis thaliana receptor complexes and how their dynamic spatio-temporal distribution at the PM has been studied recently. We will elaborate on the newly emerging concept of plasma membrane microdomains as potential hubs for specific receptor complex assembly and signalling outputs.
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Affiliation(s)
- Rebecca C Burkart
- Institute for Developmental Genetics, Heinrich-Heine University, Universitätsstr. 1, D-40225 Düsseldorf, Germany
| | - Yvonne Stahl
- Institute for Developmental Genetics, Heinrich-Heine University, Universitätsstr. 1, D-40225 Düsseldorf, Germany.
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