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For: Koehorst RB, Spruijt RB, Hemminga MA. Site-directed fluorescence labeling of a membrane protein with BADAN: probing protein topology and local environment. Biophys J 2008;94:3945-55. [PMID: 18234831 DOI: 10.1529/biophysj.107.125807] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Valdebenito S, Eugenin E, Oberhauser A. SPR spectroscopic analysis of myosin binding to wild type and mutant UNC45B. MICROPUBLICATION BIOLOGY 2024;2024:10.17912/micropub.biology.001131. [PMID: 38404916 PMCID: PMC10884834 DOI: 10.17912/micropub.biology.001131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 01/30/2024] [Accepted: 02/02/2024] [Indexed: 02/27/2024]
2
Hamada N, Longo ML. Charged hybrid block copolymer-lipid-cholesterol vesicles: pH, ionic environment, and composition dependence of phase transitions. BIOCHIMICA ET BIOPHYSICA ACTA. BIOMEMBRANES 2022;1864:184026. [PMID: 35952852 DOI: 10.1016/j.bbamem.2022.184026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 07/23/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
3
Hamada N, Longo ML. Characterization of phase separation phenomena in hybrid lipid/block copolymer/cholesterol bilayers using laurdan fluorescence with log-normal multipeak analysis. BIOCHIMICA ET BIOPHYSICA ACTA. BIOMEMBRANES 2022;1864:183887. [PMID: 35150645 DOI: 10.1016/j.bbamem.2022.183887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 02/01/2022] [Accepted: 02/03/2022] [Indexed: 06/14/2023]
4
Photophysical Properties of BADAN Revealed in the Study of GGBP Structural Transitions. Int J Mol Sci 2021;22:ijms222011113. [PMID: 34681772 PMCID: PMC8540541 DOI: 10.3390/ijms222011113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 10/06/2021] [Accepted: 10/09/2021] [Indexed: 01/14/2023]  Open
5
Trends in the Design of Intensity-Based Optical Fiber Biosensors (2010-2020). BIOSENSORS-BASEL 2021;11:bios11060197. [PMID: 34203715 PMCID: PMC8232210 DOI: 10.3390/bios11060197] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Revised: 06/08/2021] [Accepted: 06/09/2021] [Indexed: 12/29/2022]
6
Puff N, Staneva G, Angelova MI, Seigneuret M. Improved Characterization of Raft-Mimicking Phase-Separation Phenomena in Lipid Bilayers Using Laurdan Fluorescence with Log-Normal Multipeak Analysis. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020;36:4347-4356. [PMID: 32233510 DOI: 10.1021/acs.langmuir.0c00412] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
7
Wolf A, Dragelj J, Wonneberg J, Stellmacher J, Balke J, Woelke AL, Hodoscek M, Knapp EW, Alexiev U. The redox-coupled proton-channel opening in cytochrome c oxidase. Chem Sci 2020. [DOI: 10.1039/c9sc06463j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
8
Wolf A, Wonneberg J, Balke J, Alexiev U. Electronation-dependent structural change at the proton exit side of cytochrome c oxidase as revealed by site-directed fluorescence labeling. FEBS J 2019;287:1232-1246. [PMID: 31597007 DOI: 10.1111/febs.15084] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Revised: 08/17/2019] [Accepted: 10/04/2019] [Indexed: 02/05/2023]
9
Raghuraman H, Chatterjee S, Das A. Site-Directed Fluorescence Approaches for Dynamic Structural Biology of Membrane Peptides and Proteins. Front Mol Biosci 2019;6:96. [PMID: 31608290 PMCID: PMC6774292 DOI: 10.3389/fmolb.2019.00096] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 09/11/2019] [Indexed: 12/31/2022]  Open
10
Fonin A, Kuznetsova I, Turoverov K. Spectral properties of BADAN in solutions with different polarities. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.01.038] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
11
Puff N, Watanabe C, Seigneuret M, Angelova MI, Staneva G. Lo/Ld phase coexistence modulation induced by GM1. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2014;1838:2105-14. [DOI: 10.1016/j.bbamem.2014.05.002] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2013] [Revised: 04/30/2014] [Accepted: 05/03/2014] [Indexed: 01/31/2023]
12
Fonin AV, Stepanenko OV, Povarova OI, Volova CA, Philippova EM, Bublikov GS, Kuznetsova IM, Demchenko AP, Turoverov KK. Spectral characteristics of the mutant form GGBP/H152C of D-glucose/D-galactose-binding protein labeled with fluorescent dye BADAN: influence of external factors. PeerJ 2014;2:e275. [PMID: 24711960 PMCID: PMC3970809 DOI: 10.7717/peerj.275] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 01/26/2014] [Indexed: 11/22/2022]  Open
13
Reverse micelles as a tool for probing solvent modulation of protein dynamics: Reverse micelle encapsulated hemoglobin. Chem Phys 2013;430:88-97. [PMID: 24039330 DOI: 10.1016/j.chemphys.2013.04.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
14
Li WG, Xu TL. Emerging approaches to probing ion channel structure and function. Neurosci Bull 2012;28:351-74. [PMID: 22833035 DOI: 10.1007/s12264-012-1248-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
15
Krepkiy D, Gawrisch K, Swartz KJ. Structural interactions between lipids, water and S1-S4 voltage-sensing domains. J Mol Biol 2012;423:632-47. [PMID: 22858867 PMCID: PMC3616881 DOI: 10.1016/j.jmb.2012.07.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2012] [Revised: 07/17/2012] [Accepted: 07/20/2012] [Indexed: 10/28/2022]
16
Yan B, Hong Y, Chen T, Reinhard BM. Monitoring enzymatic degradation of pericellular matrices through SERS stamping. NANOSCALE 2012;4:3917-25. [PMID: 22659641 PMCID: PMC3461839 DOI: 10.1039/c2nr30747b] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
17
Lee JS, Feijen J. Polymersomes for drug delivery: Design, formation and characterization. J Control Release 2012;161:473-83. [DOI: 10.1016/j.jconrel.2011.10.005] [Citation(s) in RCA: 533] [Impact Index Per Article: 44.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2011] [Revised: 10/04/2011] [Accepted: 10/06/2011] [Indexed: 01/06/2023]
18
An epifluorescence microscopy method for generalized polarization imaging. Biochem Biophys Res Commun 2011;415:686-90. [PMID: 22079294 DOI: 10.1016/j.bbrc.2011.10.138] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2011] [Accepted: 10/28/2011] [Indexed: 12/17/2022]
19
Lee JS, Koehorst RBM, van Amerongen H, Feijen J. Time-resolved fluorescence and fluorescence anisotropy of fluorescein-labeled poly(N-isopropylacrylamide) incorporated in polymersomes. J Phys Chem B 2011;115:13162-7. [PMID: 21995555 DOI: 10.1021/jp207072q] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
20
Interaction between sodium dodecyl sulfate and membrane reconstituted aquaporins: A comparative study of spinach SoPIP2;1 and E. coli AqpZ. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2011;1808:2600-7. [DOI: 10.1016/j.bbamem.2011.05.021] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2011] [Revised: 05/27/2011] [Accepted: 05/31/2011] [Indexed: 01/13/2023]
21
Wong WT, Chan KC, So PK, Yap HK, Chung WH, Leung YC, Wong KY, Zhao Y. Increased structural flexibility at the active site of a fluorophore-conjugated beta-lactamase distinctively impacts its binding toward diverse cephalosporin antibiotics. J Biol Chem 2011;286:31771-80. [PMID: 21705325 DOI: 10.1074/jbc.m110.198895] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
22
Lomize AL, Pogozheva I, Mosberg HI. Anisotropic solvent model of the lipid bilayer. 1. Parameterization of long-range electrostatics and first solvation shell effects. J Chem Inf Model 2011;51:918-29. [PMID: 21438609 PMCID: PMC3089899 DOI: 10.1021/ci2000192] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Fluorescence Probing in Structurally Anisotropic Materials. ADVANCED FLUORESCENCE REPORTERS IN CHEMISTRY AND BIOLOGY III 2011. [DOI: 10.1007/978-3-642-18035-4_4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
24
Powe AM, Das S, Lowry M, El-Zahab B, Fakayode SO, Geng ML, Baker GA, Wang L, McCarroll ME, Patonay G, Li M, Aljarrah M, Neal S, Warner IM. Molecular Fluorescence, Phosphorescence, and Chemiluminescence Spectrometry. Anal Chem 2010;82:4865-94. [DOI: 10.1021/ac101131p] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
25
Tremblay ML, Banks AW, Rainey JK. The predictive accuracy of secondary chemical shifts is more affected by protein secondary structure than solvent environment. JOURNAL OF BIOMOLECULAR NMR 2010;46:257-270. [PMID: 20213252 DOI: 10.1007/s10858-010-9400-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Accepted: 02/17/2010] [Indexed: 05/28/2023]
26
Holt A, Koehorst RBM, Rutters-Meijneke T, Gelb MH, Rijkers DTS, Hemminga MA, Killian JA. Tilt and rotation angles of a transmembrane model peptide as studied by fluorescence spectroscopy. Biophys J 2010;97:2258-66. [PMID: 19843458 DOI: 10.1016/j.bpj.2009.07.042] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2009] [Revised: 07/23/2009] [Accepted: 07/24/2009] [Indexed: 12/15/2022]  Open
27
Optimized UV/Visible Fluorescent Markers. SPRINGER SERIES ON FLUORESCENCE 2010. [DOI: 10.1007/978-3-642-04702-2_2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
28
Stopar D, Koehorst RB, Spruijt RB, Hemminga MA. Asymmetric dipping of bacteriophage M13 coat protein with increasing lipid bilayer thickness. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2009;1788:2217-21. [DOI: 10.1016/j.bbamem.2009.08.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2009] [Revised: 08/12/2009] [Accepted: 08/17/2009] [Indexed: 11/29/2022]
29
Profiling of dynamics in protein-lipid-water systems: a time-resolved fluorescence study of a model membrane protein with the label BADAN at specific membrane depths. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2009;39:647-56. [PMID: 19760185 PMCID: PMC2841254 DOI: 10.1007/s00249-009-0538-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2009] [Revised: 08/19/2009] [Accepted: 08/26/2009] [Indexed: 12/03/2022]
30
Viruses: incredible nanomachines. New advances with filamentous phages. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2009;39:541-50. [PMID: 19680644 PMCID: PMC2841255 DOI: 10.1007/s00249-009-0523-0] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2009] [Revised: 07/06/2009] [Accepted: 07/09/2009] [Indexed: 12/11/2022]
31
Saxl T, Khan F, Matthews DR, Zhi ZL, Rolinski O, Ameer-Beg S, Pickup J. Fluorescence lifetime spectroscopy and imaging of nano-engineered glucose sensor microcapsules based on glucose/galactose-binding protein. Biosens Bioelectron 2009;24:3229-34. [PMID: 19442507 DOI: 10.1016/j.bios.2009.04.003] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2009] [Revised: 03/26/2009] [Accepted: 04/06/2009] [Indexed: 01/14/2023]
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