1
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Dalton J, Toldo JM, Allais F, Barbatti M, Stavros VG. Understanding the Impact of Symmetrical Substitution on the Photodynamics of Sinapate Esters Using Gas-Phase Ultrafast Spectroscopy. J Phys Chem Lett 2023; 14:8771-8779. [PMID: 37738948 PMCID: PMC10561265 DOI: 10.1021/acs.jpclett.3c02134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 09/08/2023] [Indexed: 09/24/2023]
Abstract
Two model biomimetic systems, ethyl sinapate (ES) and its symmetrical analogue, diethyl 2-(4-hydroxy-3,5-dimethoxybenzylidene)malonate (or diethyl sinapate, DES), are stripped to their core fundamentals through gas-phase spectroscopy to understand the underlying photophysics of photothermal materials. Following photoexcitation to the optically bright S1(ππ*) state, DES is found to repopulate the electronic ground state over 3 orders of magnitude quicker than its nonsymmetrical counterpart, ES. Our XMS-CASPT2 calculations shed light on the experimental results, revealing crucial differences in the potential energy surfaces and conical intersection topography between ES and DES. From this work, a peaked conical intersection, seen for DES, shows vital importance for the nonradiative ground-state recovery of photothermal materials. This fundamental comparative study highlights the potential impact that symmetrical substitution can have on the photodynamics of sinapate esters, providing a blueprint for future advancement in photothermal technology.
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Affiliation(s)
- Jack Dalton
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, U.K.
| | | | - Florent Allais
- URD
Agro-Biotechnologies Industrielles, CEBB, AgroParisTech, 51110 Pomacle, France
| | - Mario Barbatti
- Aix Marseille Université,
CNRS, ICR, Marseille, France
- Institut
Universitaire de France, 75231 Paris, France
| | - Vasilios G. Stavros
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, U.K.
- School
of Chemistry, University of Birmingham, Birmingham B15 2TT, U.K.
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2
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Boeije Y, Olivucci M. From a one-mode to a multi-mode understanding of conical intersection mediated ultrafast organic photochemical reactions. Chem Soc Rev 2023; 52:2643-2687. [PMID: 36970950 DOI: 10.1039/d2cs00719c] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
Abstract
This review discusses how ultrafast organic photochemical reactions are controlled by conical intersections, highlighting that decay to the ground-state at multiple points of the intersection space results in their multi-mode character.
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Affiliation(s)
- Yorrick Boeije
- Van 't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Massimo Olivucci
- Chemistry Department, University of Siena, Via Aldo Moro n. 2, 53100 Siena, Italy
- Chemistry Department, Bowling Green State University, Overman Hall, Bowling Green, Ohio 43403, USA
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3
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Kochman MA, Palczewski K, Kubas A. Theoretical Study of the Photoisomerization Mechanism of All- Trans-Retinyl Acetate. J Phys Chem A 2021; 125:8358-8372. [PMID: 34546761 PMCID: PMC8488936 DOI: 10.1021/acs.jpca.1c05533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
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The compound 9-cis-retinyl acetate (9-cis-RAc) is a precursor
to 9-cis-retinal,
which has potential application in the treatment of some hereditary
diseases of the retina. An attractive synthetic route to 9-cis-RAc is based on the photoisomerization reaction of the
readily available all-trans-RAc. In the present study,
we examine the mechanism of the photoisomerization reaction with the
use of state-of-the-art electronic structure calculations for two
polyenic model compounds: tEtEt-octatetraene and tEtEtEc-2,6-dimethyl-1,3,5,7,9-decapentaene. The occurrence
of photoisomerization is attributed to a chain-kinking mechanism,
whereby a series of S1/S0 conical intersections
associated with kinking deformations at different positions along
the polyenic chain mediate internal conversion to the S0 state, and subsequent isomerization around one of the double bonds.
Two other possible photoisomerization mechanisms are taken into account,
but they are rejected as incompatible with simulation results and/or
the available spectroscopic data.
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Affiliation(s)
- Michał Andrzej Kochman
- Institute of Physical Chemistry, Polish Academy of Sciences, Ul. Marcina Kasprzaka 44/52, 01-224 Warszawa, Poland
| | - Krzysztof Palczewski
- Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, California 92697, United States.,Department of Physiology and Biophysics, University of California, Irvine, California 92697, United States.,Department of Chemistry, University of California, Irvine, California 92697, United States
| | - Adam Kubas
- Institute of Physical Chemistry, Polish Academy of Sciences, Ul. Marcina Kasprzaka 44/52, 01-224 Warszawa, Poland
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4
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Liu Y, Xia SH, Zhang Y. Photochemical and photophysical properties of cis-stilbene molecule by electronic structure calculations and nonadiabatic surface-hopping dynamics simulations. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2020.110957] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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5
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Aldaz CR, Martinez TJ, Zimmerman PM. The Mechanics of the Bicycle Pedal Photoisomerization in Crystalline cis,cis-1,4-Diphenyl-1,3-butadiene. J Phys Chem A 2020; 124:8897-8906. [PMID: 33064471 DOI: 10.1021/acs.jpca.0c05803] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Direct irradiation of crystalline cis,cis-1,4-diphenyl-1,3-butadiene (cc-DPB) forms trans,trans-1,4-diphenyl-1,3,-butadiene via a concerted two-bond isomerization called the bicycle pedal (BP) mechanism. However, little is known about photoisomerization pathways in the solid state and there has been much debate surrounding the interpretation of volume-conserving isomerization mechanisms. The bicycle pedal photoisomerization is investigated using the quantum mechanics/molecular mechanics complete active space self-consistent field/Amber force-field method. Important details about how the steric environment influences isomerization mechanisms are revealed including how the one-bond flip and hula-twist mechanisms are suppressed by the crystal cavity, the nature of the seam space in steric environments, and the features of the bicycle pedal mechanism. Specifically, in the bicycle pedal, the phenyl rings of cc-DPB are locked in place and the intermolecular packing allows a passageway for rotation of the central diene in a volume-conserving manner. In contrast, the bicycle pedal rotation in the gas phase is not a stable pathway, so single-bond rotation mechanisms become operative instead. Furthermore, the crystal BP mechanism is an activated process that occurs completely on the excited state; the photoproduct can decay to the ground state through radiative and non-radiative pathways. The present models, however, do not capture the quantitative activation barriers, and more work is needed to better model reactions in crystals. Last, the reaction barriers of the different crystalline conformations within the unit cell of cc-DPB are compared to investigate the possibility for conformation-dependent isomerization. Although some difference in reaction barriers is observed, the difference is most likely not responsible for the experimentally observed periods of fast and slow conversion.
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Affiliation(s)
- Cody R Aldaz
- Department of Chemistry, University of Michigan, 930 N University Ave., Ann Arbor, Michigan 48109-1055, United States
| | - Todd J Martinez
- Department of Chemistry and the PULSE Institute, Stanford University, Stanford, California 94305, United States
| | - Paul M Zimmerman
- Department of Chemistry, University of Michigan, 930 N University Ave., Ann Arbor, Michigan 48109-1055, United States
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6
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Gurchiek JK, Rose JB, Guberman-Pfeffer MJ, Tilluck RW, Ghosh S, Gascón JA, Beck WF. Fluorescence Anisotropy Detection of Barrier Crossing and Ultrafast Conformational Dynamics in the S 2 State of β-Carotene. J Phys Chem B 2020; 124:9029-9046. [PMID: 32955881 DOI: 10.1021/acs.jpcb.0c06961] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Carotenoids are usually only weakly fluorescent despite being very strong absorbers in the mid-visible region because their first two excited singlet states, S1 and S2, have very short lifetimes. To probe the structural mechanisms that promote the nonradiative decay of the S2 state to the S1 state, we have carried out a series of fluorescence lineshape and anisotropy measurements with a prototype carotenoid, β-carotene, in four aprotic solvents. The anisotropy values observed in the fluorescence emission bands originating from the S2 and S1 states reveal that the large internal rotations of the emission transition dipole moment, as much as 50° relative to that of the absorption transition dipole moment, are initiated during ultrafast evolution on the S2 state potential energy surface and persist upon nonradiative decay to the S1 state. Electronic structure calculations of the orientation of the transition dipole moment account for the anisotropy results in terms of torsional and pyramidal distortions near the center of the isoprenoid backbone. The excitation wavelength dependence of the fluorescence anisotropy indicates that these out-of-plane conformational motions are initiated by passage over a low-activation energy barrier from the Franck-Condon S2 structure. This conclusion is consistent with detection over the 80-200 K range of a broad, red-shifted fluorescence band from a dynamic intermediate evolving on a steep gradient of the S2 state potential energy surface after crossing the activation barrier. The temperature dependence of the oscillator strength and anisotropy indicate that nonadiabatic passage from S2 through a conical intersection seam to S1 is promoted by the out-of-plane motions of the isoprenoid backbone with strong hindrance by solvent friction.
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Affiliation(s)
- J K Gurchiek
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
| | - Justin B Rose
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
| | - Matthew J Guberman-Pfeffer
- Department of Chemistry, University of Connecticut, 55 North Eagleville Road, Storrs, Connecticut 06268-1712, United States
| | - Ryan W Tilluck
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
| | - Soumen Ghosh
- Department of Physics, Politecnico di Milano, Piazza Leonardo da Vinci, 32, Milan, Lombardy 20133, Italy
| | - José A Gascón
- Department of Chemistry, University of Connecticut, 55 North Eagleville Road, Storrs, Connecticut 06268-1712, United States
| | - Warren F Beck
- Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, Michigan 48824, United States
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7
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Inamori M, Ikabata Y, Yoshikawa T, Nakai H. Unveiling controlling factors of the S0/S1 minimum energy conical intersection (2): Application to penalty function method. J Chem Phys 2020; 152:144108. [DOI: 10.1063/1.5142592] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Mayu Inamori
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Yasuhiro Ikabata
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Takeshi Yoshikawa
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Hiromi Nakai
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto 615-8520, Japan
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8
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Horbury MD, Holt EL, Mouterde LMM, Balaguer P, Cebrián J, Blasco L, Allais F, Stavros VG. Towards symmetry driven and nature inspired UV filter design. Nat Commun 2019; 10:4748. [PMID: 31628301 PMCID: PMC6802189 DOI: 10.1038/s41467-019-12719-z] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 09/26/2019] [Indexed: 12/13/2022] Open
Abstract
In plants, sinapate esters offer crucial protection from the deleterious effects of ultraviolet radiation exposure. These esters are a promising foundation for designing UV filters, particularly for the UVA region (400 – 315 nm), where adequate photoprotection is currently lacking. Whilst sinapate esters are highly photostable due to a cis-trans (and vice versa) photoisomerization, the cis-isomer can display increased genotoxicity; an alarming concern for current cinnamate ester-based human sunscreens. To eliminate this potentiality, here we synthesize a sinapate ester with equivalent cis- and trans-isomers. We investigate its photostability through innovative ultrafast spectroscopy on a skin mimic, thus modelling the as close to true environment of sunscreen formulas. These studies are complemented by assessing endocrine disruption activity and antioxidant potential. We contest, from our results, that symmetrically functionalized sinapate esters may show exceptional promise as nature-inspired UV filters in next generation sunscreen formulations. Sinapate esters are promising nature-inspired sunscreen and antioxidant agents but their photoisomerization may lead to ineffective or harmful species. Here the authors propose a symmetric ester with indistinguishable trans and cis isomers and prove its effectiveness by optical spectroscopies on a skin mimic.
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Affiliation(s)
- Michael D Horbury
- Department of Chemistry, University of Warwick, Gibbet Hill, Coventry, CV4 7AL, UK. .,School of Electronic and Electrical Engineering, University of Leeds, Leeds, LS2 9JT, UK.
| | - Emily L Holt
- Department of Chemistry, University of Warwick, Gibbet Hill, Coventry, CV4 7AL, UK.,Molecular Analytical Science Centre for Doctoral Training, Senate House, University of Warwick, Coventry, CV4 7AL, UK
| | - Louis M M Mouterde
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, 51110, Pomacle, France
| | | | - Juan Cebrián
- Lubrizol Advanced Materials, C/Isaac Peral 17-Pol. Industrial Cami Ral, 08850, Gava, Spain
| | - Laurent Blasco
- Lubrizol Advanced Materials, C/Isaac Peral 17-Pol. Industrial Cami Ral, 08850, Gava, Spain
| | - Florent Allais
- URD Agro-Biotechnologies Industrielles (ABI), CEBB, AgroParisTech, 51110, Pomacle, France
| | - Vasilios G Stavros
- Department of Chemistry, University of Warwick, Gibbet Hill, Coventry, CV4 7AL, UK.
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9
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Fuß W. Previtamin D: Z-E photoisomerization via a Hula-twist conical intersection. Phys Chem Chem Phys 2019; 21:6776-6789. [PMID: 30887977 DOI: 10.1039/c9cp00500e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
On photoisomerization of previtamin D - a steroid Z-triene - produced in situ by ring opening of 7-dehydrocholesterol in a cold matrix, it was found in A. M. Müller et al. [Angew. Chem., Int. Ed., 1998, 37, 505-507] that the product (tachysterol) had rotated not only its central double bond but also an adjacent single bond. This is called a Hula twist (HT) due to the alternative description, in which it is just one central CH group that rotates. It was pointed out that the results directly support the calculated molecular structure at a conical intersection, which mediates the Z-E isomerization of polyenes. With a more sophisticated technique, Saltiel et al. (J. Phys. Chem. Lett., 2013, 4, 716-721) confirmed this tachysterol rotamer as the main product but found two additional conformers. They believed to have seen also three previtamin D conformers, suggested to be a result of hot-ground-state reactions from the primary rotamer, and interpreted all tachysterol products to be a result of a double-bond twist (DBT), not a HT. On the basis of published circular dichroism data and consideration of other reactions, it is here shown that under these conditions hot-ground-state reactions are unimportant or even negligible and that there is practically only a single conformer of previtamin D after ring opening. All products can be easily understood on the basis of an HT-type conical intersection, which is thus further supported. Invoking a published pretwist model even rationalizes product ratios. The two twists in HT are concerted. Furthermore HT is fully consistent with the NEER principle (nonequilibration of excited rotamers) and even offers additional possibilities for conformer control.
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10
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Saltiel J, Redwood CE, Laohhasurayotin K, Samudrala R. Photochemistry of the 1,6-Dideuterio-1,3,5-hexatrienes in Solution: Efficient Terminal Bond Photoisomerization in One-Bond-Twist and Bicycle Pedal Ways. J Phys Chem A 2018; 122:8477-8489. [PMID: 30277763 DOI: 10.1021/acs.jpca.8b08288] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The report that the central bond photoisomerization of the 1,3,5-hexatrienes (Hts) is highly inefficient has encouraged theoreticians to seek conical intersections (CIs) at geometries that can explain rapid nonradiative return to the initially excited isomer. Because they are photochemically silent, torsional relaxations about the terminal double bonds of the Hts have not been evaluated as significant radiationless decay pathways. Study of the photoisomerization of trans,trans,trans- and trans,cis,trans-1,6-dideuterio-1,3,5-hexatrienes ( ttt- and tct-Htd2) addresses this issue. Degassed cyclohexane- d12 (C6D12) and CD3CN solutions were irradiated at 254 nm in quartz NMR tubes, and the progress of the reactions was followed by 1H NMR. Photoisomerization rates based on the integration of terminal hydrogen NMR peaks are in reasonable agreement with rates obtained by fitting pure isomer NMR spectra to the phase shift and baseline corrected experimental NMR spectra. The results show that terminal bond isomerization is highly efficient, especially when one considers that central bond isomerization is much more efficient than previously reported and is mainly observed together with terminal bond isomerization. A mechanism involving terminal one-bond-twist (OBT) in competition with a bicycle pedal (BP) process accounts for all terminal and most central bond photoisomerization. OBT central bond isomerization is a minor reaction that is observed primarily in the tct to ttt direction. Most surprising is the prominent role of the BP process in central bond photoisomerization. Proposed initially to account for photoisomerization in free volume constraining media, it is observed here in the absence of medium constraints.
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Affiliation(s)
- Jack Saltiel
- Department of Chemistry and Biochemistry , Florida State University , Tallahassee , Florida 32306-4390 , United States
| | - Christopher E Redwood
- Department of Chemistry and Biochemistry , Florida State University , Tallahassee , Florida 32306-4390 , United States
| | - Kritapas Laohhasurayotin
- Department of Chemistry and Biochemistry , Florida State University , Tallahassee , Florida 32306-4390 , United States
| | - Ramakrishna Samudrala
- Department of Chemistry and Biochemistry , Florida State University , Tallahassee , Florida 32306-4390 , United States
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11
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Direct evidence for hula twist and single-bond rotation photoproducts. Nat Commun 2018; 9:2510. [PMID: 29955041 PMCID: PMC6023863 DOI: 10.1038/s41467-018-04928-9] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 05/03/2018] [Indexed: 12/03/2022] Open
Abstract
Photoisomerization reactions are quintessential processes driving molecular machines and motors, govern smart materials, catalytic processes, and photopharmacology, and lie at the heart of vision, phototaxis, or vitamin production. Despite this plethora of applications fundamental photoisomerization mechanisms are not well understood at present. The famous hula-twist motion—a coupled single and double-bond rotation—was proposed to explain proficient photoswitching in restricted environments but fast thermal follow-up reactions hamper identification of primary photo products. Herein we describe an asymmetric chromophore possessing four geometrically distinct diastereomeric states that do not interconvert thermally and can be crystallized separately. Employing this molecular setup direct and unequivocal evidence for the hula-twist photoreaction and for photoinduced single-bond rotation is obtained. The influences of the surrounding medium and temperature are quantified and used to favor unusual photoreactions. Based on our findings molecular engineers will be able to implement photo control of complex molecular motions more consciously. Photoisomerization mechanisms govern important (bio)catalytic reactions and lie at the core of many functional materials. Here, the authors report a molecular setup that allows for the direct and separate observation of three fundamental photoreactions, namely the hula twist, single-bond rotation, as well as double-bond isomerization.
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12
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Vacher M, Fdez Galván I, Ding BW, Schramm S, Berraud-Pache R, Naumov P, Ferré N, Liu YJ, Navizet I, Roca-Sanjuán D, Baader WJ, Lindh R. Chemi- and Bioluminescence of Cyclic Peroxides. Chem Rev 2018; 118:6927-6974. [PMID: 29493234 DOI: 10.1021/acs.chemrev.7b00649] [Citation(s) in RCA: 220] [Impact Index Per Article: 36.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Bioluminescence is a phenomenon that has fascinated mankind for centuries. Today the phenomenon and its sibling, chemiluminescence, have impacted society with a number of useful applications in fields like analytical chemistry and medicine, just to mention two. In this review, a molecular-orbital perspective is adopted to explain the chemistry behind chemiexcitation in both chemi- and bioluminescence. First, the uncatalyzed thermal dissociation of 1,2-dioxetane is presented and analyzed to explain, for example, the preference for triplet excited product states and increased yield with larger nonreactive substituents. The catalyzed fragmentation reaction and related details are then exemplified with substituted 1,2-dioxetanone species. In particular, the preference for singlet excited product states in that case is explained. The review also examines the diversity of specific solutions both in Nature and in artificial systems and the difficulties in identifying the emitting species and unraveling the color modulation process. The related subject of excited-state chemistry without light absorption is finally discussed. The content of this review should be an inspiration to human design of new molecular systems expressing unique light-emitting properties. An appendix describing the state-of-the-art experimental and theoretical methods used to study the phenomena serves as a complement.
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Affiliation(s)
- Morgane Vacher
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Ignacio Fdez Galván
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden
| | - Bo-Wen Ding
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry , Beijing Normal University , Beijing 100875 , China
| | - Stefan Schramm
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi , United Arab Emirates
| | - Romain Berraud-Pache
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Panče Naumov
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi , United Arab Emirates
| | | | - Ya-Jun Liu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry , Beijing Normal University , Beijing 100875 , China
| | - Isabelle Navizet
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Échelle, MSME, UMR 8208 CNRS, UPEM , 5 bd Descartes , 77454 Marne-la-Vallée , France
| | - Daniel Roca-Sanjuán
- Institut de Ciència Molecular , Universitat de València , P.O. Box 22085 , Valencia , Spain
| | - Wilhelm J Baader
- Departamento de Química Fundamental, Instituto de Química , Universidade de São Paulo , Av. Prof. Lineu Prestes, 748 , 05508-000 São Paulo , SP , Brazil
| | - Roland Lindh
- Department of Chemistry-Ångström , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.,Department of Chemistry and Chemical Biology , Harvard University , 12 Oxford Street , Cambridge , Massachusetts 02138 , United States
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13
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Shu Y, Fales BS, Peng WT, Levine BG. Understanding Nonradiative Recombination through Defect-Induced Conical Intersections. J Phys Chem Lett 2017; 8:4091-4099. [PMID: 28799771 DOI: 10.1021/acs.jpclett.7b01707] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Defects are known to introduce pathways for the nonradiative recombination of electronic excitations in semiconductors, but implicating a specific defect as a nonradiative center remains challenging for both experiment and theory. In this Perspective, we present recent progress toward this goal involving the identification and characterization of defect-induced conical intersections (DICIs), points of degeneracy between the ground and first excited electronic states of semiconductor materials that arise from the deformation of specific defects. Analysis of DICIs does not require the assumption of weak correlation between the electron and hole nor of stationary nuclei. It is demonstrated that in some cases an energetically accessible DICI is present even when no midgap state is predicted by single-particle theories (e.g., density functional theory). We review recent theoretical and computational developments that enable the location of DICIs in semiconductor nanomaterials and present insights into the photoluminescence of silicon nanocrystals gleaned from DICIs.
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Affiliation(s)
- Yinan Shu
- Department of Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States
| | - B Scott Fales
- Department of Chemistry and the PULSE Institute, Stanford University , Stanford, California 94305, United States
- SLAC National Accelerator Laboratory , Menlo Park, California 94025, United States
| | - Wei-Tao Peng
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
| | - Benjamin G Levine
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
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14
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Komori-Orisaku K, Hirose Y, Iwakura I. Pulsed Nd:YAG laser-induced photoreaction of cis,cis-1,3-cyclooctadiene at 266 nm: selective cyclization to cis-bicyclo[4.2.0]oct-7-ene. Photochem Photobiol Sci 2017; 16:146-150. [PMID: 27982146 DOI: 10.1039/c6pp00323k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nanosecond-scale pulsed laser irradiation of cis,cis-1,3-cyclooctadiene via an Nd:YAG laser at 266 nm induced highly selective cyclization of the 1,3-diene moiety to afford cis-bicyclo[4.2.0]oct-7-ene in high yield. The pulsed Nd:YAG laser light is highly monochromatic thereby allowing efficient control of the photoreaction selectivity by controlling the photostationary state.
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Affiliation(s)
- Keiko Komori-Orisaku
- Department Research Institute of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Yokohama 221-8686, Japan
| | - Yui Hirose
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Yokohama, 221-8686, Japan
| | - Izumi Iwakura
- Department Research Institute of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Yokohama 221-8686, Japan and Department of Chemistry, Faculty of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Yokohama 221-8686, Japan.
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15
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Kumpulainen T, Lang B, Rosspeintner A, Vauthey E. Ultrafast Elementary Photochemical Processes of Organic Molecules in Liquid Solution. Chem Rev 2016; 117:10826-10939. [DOI: 10.1021/acs.chemrev.6b00491] [Citation(s) in RCA: 249] [Impact Index Per Article: 31.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Tatu Kumpulainen
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
| | - Bernhard Lang
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
| | - Arnulf Rosspeintner
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
| | - Eric Vauthey
- Department of Physical Chemistry,
Sciences II, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
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16
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Kingsland A, Samai S, Yan Y, Ginger DS, Maibaum L. Local Density Fluctuations Predict Photoisomerization Quantum Yield of Azobenzene-Modified DNA. J Phys Chem Lett 2016; 7:3027-3031. [PMID: 27428569 DOI: 10.1021/acs.jpclett.6b00956] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Azobenzene incorporated into DNA has a photoisomerization quantum yield that depends on the DNA sequence near the azobenzene attachment site. We use Molecular Dynamics computer simulations to elucidate which physical properties of the modified DNA determine the quantum yield. We show for a wide range of DNA sequences that the photoisomerization quantum yield is strongly correlated with the variance of the number of atoms in close proximity to the outer phenyl ring of the azobenzene group. We infer that quantum yield is controlled by the availability of fluctuations that enable the conformational change. We demonstrate that these simulations can be used as a qualitative predictive tool by calculating the quantum yield for several novel DNA sequences, and confirming these predictions using UV-vis spectroscopy. Our results will be useful for the development of a wide range of applications of photoresponsive DNA nanotechnology.
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Affiliation(s)
- Addie Kingsland
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - Soumyadyuti Samai
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - Yunqi Yan
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - David S Ginger
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - Lutz Maibaum
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
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17
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Nairat M, Konar A, Lozovoy VV, Beck WF, Blanchard GJ, Dantus M. Controlling S2 Population in Cyanine Dyes Using Shaped Femtosecond Pulses. J Phys Chem A 2016; 120:1876-85. [PMID: 26935762 DOI: 10.1021/acs.jpca.6b01835] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Fast population transfer from higher to lower excited states occurs via internal conversion (IC) and is the basis of Kasha's rule, which states that spontaneous emission takes place from the lowest excited state of the same multiplicity. Photonic control over IC is of interest because it would allow direct influence over intramolecular nonradiative decay processes occurring in condensed phase. Here we tracked the S2 and S1 fluorescence yield for different cyanine dyes in solution as a function of linear chirp. For the cyanine dyes with polar solvation response IR144 and meso-piperidine substituted IR806, increased S2 emission was observed when using transform limited pulses, whereas chirped pulses led to increased S1 emission. The nonpolar solvated cyanine IR806, on the other hand, did not show S2 emission. A theoretical model, based on a nonperturbative solution of the equation of motion for the density matrix, is offered to explain and simulate the anomalous chirp dependence. Our findings, which depend on pulse properties beyond peak intensity, offer a photonic method to control S2 population thereby opening the door for the exploration of photochemical processes initiated from higher excited states.
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Affiliation(s)
- Muath Nairat
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
| | - Arkaprabha Konar
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
| | - Vadim V Lozovoy
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
| | - Warren F Beck
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
| | - G J Blanchard
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States
| | - Marcos Dantus
- Department of Chemistry, Michigan State University , East Lansing, Michigan 48824, United States.,Department of Physics and Astronomy, Michigan State University , East Lansing, Michigan 48824, United States
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18
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Saini P, Banerjee M, Chattopadhyay A. Computational Investigation of the Photochemical Reaction Path of Some Synthesized and Experimentally Analyzed Small-Chain Conjugated Nitrones. J Phys Chem A 2016; 120:396-406. [PMID: 26697926 DOI: 10.1021/acs.jpca.5b11069] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Praveen Saini
- Department
of Chemistry, Birla Institute of Technology and Science (BITS), Pilani−K.K.
Birla Goa Campus, Zuarinagar, Goa 403 726, India
| | - Mainak Banerjee
- Department
of Chemistry, Birla Institute of Technology and Science (BITS), Pilani−K.K.
Birla Goa Campus, Zuarinagar, Goa 403 726, India
| | - Anjan Chattopadhyay
- Department
of Chemistry, Birla Institute of Technology and Science (BITS), Pilani−K.K.
Birla Goa Campus, Zuarinagar, Goa 403 726, India
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19
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Chattopadhyay A, Saini P, Pandharkar R. Exploring the isomerization paths of push–pull hexatrienes. RSC Adv 2016. [DOI: 10.1039/c6ra16812d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The first photo-excited singlet state of all-trans donor (amine), acceptor (cyano)-substituted hexatriene forms donor side-twisted minima and its passage towards the cis–trans–trans isomer is characterized by an S0/S1 conical intersection.
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Affiliation(s)
- Anjan Chattopadhyay
- Department of Chemistry
- Birla Institute of Technology and Science (BITS)
- Pilani – K.K. Birla Goa Campus
- India
| | - Praveen Saini
- Department of Chemistry
- Birla Institute of Technology and Science (BITS)
- Pilani – K.K. Birla Goa Campus
- India
| | - Riddhish Pandharkar
- Department of Chemistry
- Birla Institute of Technology and Science (BITS)
- Pilani – K.K. Birla Goa Campus
- India
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20
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Carreira-Blanco C, Singer P, Diller R, Luis Pérez Lustres J. Ultrafast deactivation of bilirubin: dark intermediates and two-photon isomerization. Phys Chem Chem Phys 2016; 18:7148-55. [DOI: 10.1039/c5cp06971h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Franck-Condon state A couples to the dark intermediate B, which shows tight molecular skeleton and distorted hydrogen bonding. B deactivates with nearly 100% efficiency. 2-Photon excitation at 400 nm triggers Z,E isomerization efficiently.
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Affiliation(s)
- Carlos Carreira-Blanco
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Department of Physical Chemistry
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
| | - Patrick Singer
- Fachbereich Physik
- Technische Universität Kaiserslautern
- D-67663 Kaiserslautern
- Germany
| | - Rolf Diller
- Fachbereich Physik
- Technische Universität Kaiserslautern
- D-67663 Kaiserslautern
- Germany
| | - J. Luis Pérez Lustres
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Department of Physical Chemistry
- Universidade de Santiago de Compostela
- E-15782 Santiago de Compostela
- Spain
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21
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Branching and competition of ultrafast photochemical reactions of cyclooctatriene and bicyclooctadiene. Chem Phys 2015. [DOI: 10.1016/j.chemphys.2015.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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22
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A computational investigation of the photochemical oxaziridine and amide conversion process of open-chain conjugated nitrone with electron-withdrawing trifluoromethyl group on nitrogen. J CHEM SCI 2015. [DOI: 10.1007/s12039-015-0941-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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23
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Steinwand S, Halbritter T, Rastädter D, Ortiz-Sánchez JM, Burghardt I, Heckel A, Wachtveitl J. Ultrafast Spectroscopy of Hydroxy-Substituted Azobenzenes in Water. Chemistry 2015; 21:15720-31. [DOI: 10.1002/chem.201501863] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Indexed: 12/21/2022]
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24
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Nikiforov A, Gamez JA, Thiel W, Huix-Rotllant M, Filatov M. Assessment of approximate computational methods for conical intersections and branching plane vectors in organic molecules. J Chem Phys 2015; 141:124122. [PMID: 25273427 DOI: 10.1063/1.4896372] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Quantum-chemical computational methods are benchmarked for their ability to describe conical intersections in a series of organic molecules and models of biological chromophores. Reference results for the geometries, relative energies, and branching planes of conical intersections are obtained using ab initio multireference configuration interaction with single and double excitations (MRCISD). They are compared with the results from more approximate methods, namely, the state-interaction state-averaged restricted ensemble-referenced Kohn-Sham method, spin-flip time-dependent density functional theory, and a semiempirical MRCISD approach using an orthogonalization-corrected model. It is demonstrated that these approximate methods reproduce the ab initio reference data very well, with root-mean-square deviations in the optimized geometries of the order of 0.1 Å or less and with reasonable agreement in the computed relative energies. A detailed analysis of the branching plane vectors shows that all currently applied methods yield similar nuclear displacements for escaping the strong non-adiabatic coupling region near the conical intersections. Our comparisons support the use of the tested quantum-chemical methods for modeling the photochemistry of large organic and biological systems.
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Affiliation(s)
- Alexander Nikiforov
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Jose A Gamez
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Miquel Huix-Rotllant
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, D-60438 Frankfurt am Main, Germany
| | - Michael Filatov
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany
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25
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Hu W, Chan GKL. Excited-State Geometry Optimization with the Density Matrix Renormalization Group, as Applied to Polyenes. J Chem Theory Comput 2015; 11:3000-9. [DOI: 10.1021/acs.jctc.5b00174] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Weifeng Hu
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Garnet Kin-Lic Chan
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
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26
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Beck WF, Bishop MM, Roscioli JD, Ghosh S, Frank HA. Excited state conformational dynamics in carotenoids: Dark intermediates and excitation energy transfer. Arch Biochem Biophys 2015; 572:175-183. [DOI: 10.1016/j.abb.2015.02.016] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2014] [Revised: 01/24/2015] [Accepted: 02/13/2015] [Indexed: 11/26/2022]
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27
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28
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Farahani P, Lundberg M, Lindh R, Roca-Sanjuán D. Theoretical study of the dark photochemistry of 1,3-butadiene via the chemiexcitation of Dewar dioxetane. Phys Chem Chem Phys 2015; 17:18653-64. [DOI: 10.1039/c5cp02269j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
We report on the molecular basis of excited-state chemical processes that are induced by intramolecular chemiexcitation rather than by irradiation.
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Affiliation(s)
- Pooria Farahani
- Department of Chemistry-Ångström
- Uppsala University
- SE-751 20 Uppsala
- Sweden
- Instituto de Ciencia Molecular
| | - Marcus Lundberg
- Department of Chemistry-Ångström
- Uppsala University
- SE-751 20 Uppsala
- Sweden
| | - Roland Lindh
- Department of Chemistry-Ångström
- Uppsala University
- SE-751 20 Uppsala
- Sweden
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29
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Quick M, Dobryakov AL, Gerecke M, Richter C, Berndt F, Ioffe IN, Granovsky AA, Mahrwald R, Ernsting NP, Kovalenko SA. Photoisomerization Dynamics and Pathways of trans- and cis-Azobenzene in Solution from Broadband Femtosecond Spectroscopies and Calculations. J Phys Chem B 2014; 118:8756-71. [DOI: 10.1021/jp504999f] [Citation(s) in RCA: 125] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- M. Quick
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - A. L. Dobryakov
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - M. Gerecke
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - C. Richter
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - F. Berndt
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - I. N. Ioffe
- Department
of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia
| | | | - R. Mahrwald
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - N. P. Ernsting
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
| | - S. A. Kovalenko
- Department
of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str.
2, D-12489 Berlin, Germany
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30
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Lei Y, Yu L, Zhou B, Zhu C, Wen Z, Lin SH. Landscapes of four-enantiomer conical intersections for photoisomerization of stilbene: CASSCF calculation. J Phys Chem A 2014; 118:9021-31. [PMID: 24977930 DOI: 10.1021/jp5020109] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The photoisomerization of cis- and trans-stilbene through conical intersections (CI) is mainly governed by four dihedral angles around central C═C double bonds. The two of them are C-C═C-C and H-C═C-H dihedral angles that are found to form a mirror rotation coordinate, and the mirror plane appears at the two dihedral angles equal to zeros with which the middle state is defined through partial optimization. There exist the first-type of hula-twist-CI enantiomers, the second-type of hula-twist-CI enantiomers, the first-type of one-bond-flip-CI enantiomers, and the second type of one-bond-flip-CI enantiomers as well as cis-enantiomers and trans-enantiomers with respect to this mirror plane. The complete active space self-consistent field method is employed to calculate minimum potential energy profile along the mirror rotation coordinate for each enantiomers, and it is found that the left-hand manifold and the right-hand manifold of potential energy surfaces can be energetically transferred via photoisomerization. Furthermore, two-dimensional potential energy surfaces in terms of the branching plane g-h coordinates are constructed at vicinity of each conical intersection, and the landscapes of conical intersections show distinct feature, and in excited-state four potential wells separated in different section of g-h plane related to different conical intersections which indicate different photoisomerization pathways.
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Affiliation(s)
- Yibo Lei
- Department of Applied Chemistry, Institute of Molecular Science and Center for Interdisciplinary Molecular Science, National Chiao-Tung University , Hsinchu 300, Taiwan
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31
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Saini P, Chattopadhyay A. Spectroscopic features of the low-lying singlet states of some N-alkyl retinylnitrone model systems and their involvement in oxaziridine formation. RSC Adv 2014. [DOI: 10.1039/c3ra47186a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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32
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Robb MA. In This Molecule There Must Be a Conical Intersection. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2014. [DOI: 10.1016/b978-0-12-800256-8.00003-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
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34
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Mori T, Martínez TJ. Exploring the Conical Intersection Seam: The Seam Space Nudged Elastic Band Method. J Chem Theory Comput 2013; 9:1155-63. [DOI: 10.1021/ct300892t] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Toshifumi Mori
- PULSE Institute and
Department
of Chemistry, Stanford University, Stanford, California 94305, United
States
- SLAC National Accelerator
Laboratory,
2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Todd. J. Martínez
- PULSE Institute and
Department
of Chemistry, Stanford University, Stanford, California 94305, United
States
- SLAC National Accelerator
Laboratory,
2575 Sand Hill Road, Menlo Park, California 94025, United States
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35
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Malhado JP, Hynes JT. Photoisomerization for a model protonated Schiff base in solution: Sloped/peaked conical intersection perspective. J Chem Phys 2012; 137:22A543. [DOI: 10.1063/1.4754505] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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36
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Comparative study of spectroscopic properties of the low-lying electronic states of 2,4-pentadien-1-iminium cation and its N-substituted analogues. J CHEM SCI 2012. [DOI: 10.1007/s12039-012-0311-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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37
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Blancafort L, Robb MA. A Valence Bond Description of the Prefulvene Extended Conical Intersection Seam of Benzene. J Chem Theory Comput 2012; 8:4922-30. [DOI: 10.1021/ct300625u] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Lluís Blancafort
- Institut de Química Computacional
and Departament de Química, Universitat de Girona, Campus de
Montilivi, E-17071 Girona, Spain
| | - Michael A. Robb
- Department of Chemistry, Imperial
College London, London SW7 2AZ, United Kingdom
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38
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Fuß W. Hula-twist cis–trans isomerization: The role of internal forces and the origin of regioselectivity. J Photochem Photobiol A Chem 2012. [DOI: 10.1016/j.jphotochem.2012.01.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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39
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Plasser F, Barbatti M, Aquino AJA, Lischka H. Electronically excited states and photodynamics: a continuing challenge. Theor Chem Acc 2012. [DOI: 10.1007/s00214-011-1073-y] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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40
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Snyder Jr. JW, Mazziotti DA. Photoexcited tautomerization of vinyl alcohol to acetylaldehydevia a conical intersection from contracted Schrödinger theory. Phys Chem Chem Phys 2012; 14:1660-7. [DOI: 10.1039/c2cp23065h] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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41
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Budyka MF, Potashova NI, Chashchikhin OV, Gavrishova TN, Lee VM. Photoisomerization of naphthylquinolylethylenes in neutral and protonated forms. HIGH ENERGY CHEMISTRY 2011. [DOI: 10.1134/s0018143911050055] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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42
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Sanchez-Lozano M, Estévez CM, Hermida-Ramón J, Serrano-Andres L. Ultrafast Ring-Opening/Closing and Deactivation Channels for a Model Spiropyran–Merocyanine System. J Phys Chem A 2011; 115:9128-38. [DOI: 10.1021/jp2062095] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marta Sanchez-Lozano
- Departamento de
Química Física, Facultade de Química, Universidade de Vigo, 36310 Vigo, Spain
| | - Carlos Manuel Estévez
- Departamento de
Química Física, Facultade de Química, Universidade de Vigo, 36310 Vigo, Spain
| | - Jose Hermida-Ramón
- Departamento de
Química Física, Facultade de Química, Universidade de Vigo, 36310 Vigo, Spain
| | - Luis Serrano-Andres
- Instituto de Ciencia Molecular, Universitat de València, 46071 València,
Spain
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43
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Nenov A, de Vivie-Riedle R. Geometrical and substituent effects in conical intersections: Linking chemical structure and photoreactivity in polyenes. J Chem Phys 2011; 135:034304. [DOI: 10.1063/1.3608924] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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44
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Lapinski L, Reva I, Nowak MJ, Fausto R. Five isomers of monomeric cytosine and their interconversions induced by tunable UV laser light. Phys Chem Chem Phys 2011; 13:9676-84. [PMID: 21499603 DOI: 10.1039/c0cp02812f] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoisomerization processes involving five isomers of cytosine were induced by narrowband tunable UV irradiation of matrix-isolated monomers of the compound. Irradiation of an argon matrix containing cytosine monomers with UV λ = 313 nm laser light resulted in syn↔anti photoisomerizations between the two imino-oxo forms, whereas the substantially more populated amino-hydroxy and amino-oxo forms stayed intact. Subsequent irradiation with shorter-wavelength UV λ = 311 nm laser light led to two concomitant phototautomeric processes consuming the amino-oxo isomer: (i) an oxo → hydroxy hydrogen-atom transfer photoprocess converting the amino-oxo form into the amino-hydroxy tautomer; (ii) amino → imino hydrogen-atom transfer converting the amino-oxo form into the imino-oxo isomers. The UV-induced phototransformations, together with mutual conversions of the two amino-hydroxy conformers induced by irradiation with narrowband NIR light, allowed positive detection and identification of the five isomeric forms of monomeric cytosine. This is the first experimental observation of all five low-energy isomers of cytosine.
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Affiliation(s)
- Leszek Lapinski
- Institute of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland
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45
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Schapiro I, Melaccio F, Laricheva EN, Olivucci M. Using the computer to understand the chemistry of conical intersections. Photochem Photobiol Sci 2011; 10:867-86. [DOI: 10.1039/c0pp00290a] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Nenov A, Cordes T, Herzog TT, Zinth W, de Vivie-Riedle R. Molecular Driving Forces for Z/E Isomerization Mediated by Heteroatoms: The Example Hemithioindigo. J Phys Chem A 2010; 114:13016-30. [DOI: 10.1021/jp107899g] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Artur Nenov
- Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 11, D-81377 München, Germany, and BioMolecular Optics and Munich Center for Integrated Protein Science CIPSM, Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, D-80538 München, Germany
| | - Thorben Cordes
- Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 11, D-81377 München, Germany, and BioMolecular Optics and Munich Center for Integrated Protein Science CIPSM, Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, D-80538 München, Germany
| | - Teja T. Herzog
- Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 11, D-81377 München, Germany, and BioMolecular Optics and Munich Center for Integrated Protein Science CIPSM, Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, D-80538 München, Germany
| | - Wolfgang Zinth
- Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 11, D-81377 München, Germany, and BioMolecular Optics and Munich Center for Integrated Protein Science CIPSM, Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, D-80538 München, Germany
| | - Regina de Vivie-Riedle
- Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 11, D-81377 München, Germany, and BioMolecular Optics and Munich Center for Integrated Protein Science CIPSM, Fakultät für Physik, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, D-80538 München, Germany
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Oshkin IV, Budyka MF. Quantum-chemical study of the photoisomerization and photocyclization reactions of styrylquinolines: Potential energy surfaces. HIGH ENERGY CHEMISTRY 2010. [DOI: 10.1134/s0018143910060044] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Malhado JP, Spezia R, Hynes JT. Dynamical Friction Effects on the Photoisomerization of a Model Protonated Schiff Base in Solution. J Phys Chem A 2010; 115:3720-35. [DOI: 10.1021/jp106096m] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- João Pedro Malhado
- Département de Chimie, CNRS UMR 8640 PASTEUR, École Normale Supérieure, 24 rue Lhomond, 75005 Paris, France
| | - Riccardo Spezia
- Laboratoire Analyse et Modélisation pour la Biologie et l’Environement, CNRS UMR 8587, Université d’Evry Val d’Essonne, Bd. F. Mitterrand, 91025 Evry, France
| | - James T. Hynes
- Département de Chimie, CNRS UMR 8640 PASTEUR, École Normale Supérieure, 24 rue Lhomond, 75005 Paris, France
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
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Levine BG, Martínez TJ. Ab Initio Multiple Spawning Dynamics of Excited Butadiene: Role of Charge Transfer. J Phys Chem A 2009; 113:12815-24. [DOI: 10.1021/jp907111u] [Citation(s) in RCA: 94] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Benjamin G. Levine
- Department of Chemistry and The Beckman Institute, University of Illinois, Urbana, Illinois 61801
| | - Todd J. Martínez
- Department of Chemistry and The Beckman Institute, University of Illinois, Urbana, Illinois 61801
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Szymczak JJ, Barbatti M, Lischka H. Is the Photoinduced Isomerization in Retinal Protonated Schiff Bases a Single- or Double-Torsional Process? J Phys Chem A 2009; 113:11907-18. [DOI: 10.1021/jp903329j] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jaroslaw J. Szymczak
- Institute for Theoretical Chemistry, University of Vienna, Waehringerstrasse 17, A-1090, Vienna, Austria, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic
| | - Mario Barbatti
- Institute for Theoretical Chemistry, University of Vienna, Waehringerstrasse 17, A-1090, Vienna, Austria, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic
| | - Hans Lischka
- Institute for Theoretical Chemistry, University of Vienna, Waehringerstrasse 17, A-1090, Vienna, Austria, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic
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