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Müller S, Giorio C, Borduas-Dedekind N. Tracking the Photomineralization Mechanism in Irradiated Lab-Generated and Field-Collected Brown Carbon Samples and Its Effect on Cloud Condensation Nuclei Abilities. ACS ENVIRONMENTAL AU 2023; 3:164-178. [PMID: 37215437 PMCID: PMC10197166 DOI: 10.1021/acsenvironau.2c00055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 03/02/2023] [Accepted: 03/02/2023] [Indexed: 05/24/2023]
Abstract
Organic aerosols affect the planet's radiative balance by absorbing and scattering light as well as by activating cloud droplets. These organic aerosols contain chromophores, termed brown carbon (BrC), and can undergo indirect photochemistry, affecting their ability to act as cloud condensation nuclei (CCN). Here, we investigated the effect of photochemical aging by tracking the conversion of organic carbon into inorganic carbon, termed the photomineralization mechanism, and its effect on the CCN abilities in four different types of BrC samples: (1) laboratory-generated (NH4)2SO4-methylglyoxal solutions, (2) dissolved organic matter isolate from Suwannee River fulvic acid (SRFA), (3) ambient firewood smoke aerosols, and (4) ambient urban wintertime particulate matter in Padua, Italy. Photomineralization occurred in all BrC samples albeit at different rates, evidenced by photobleaching and by loss of organic carbon up to 23% over a simulated 17.6 h of sunlight exposure. These losses were correlated with the production of CO up to 4% and of CO2 up to 54% of the initial organic carbon mass, monitored by gas chromatography. Photoproducts of formic, acetic, oxalic and pyruvic acids were also produced during irradiation of the BrC solutions, but at different yields depending on the sample. Despite these chemical changes, CCN abilities did not change substantially for the BrC samples. In fact, the CCN abilities were dictated by the salt content of the BrC solution, trumping a photomineralization effect on the CCN abilities for the hygroscopic BrC samples. Solutions of (NH4)2SO4-methylglyoxal, SRFA, firewood smoke, and ambient Padua samples had hygroscopicity parameters κ of 0.6, 0.1, 0.3, and 0.6, respectively. As expected, the SRFA solution with a κ of 0.1 was most impacted by the photomineralization mechanism. Overall, our results suggest that the photomineralization mechanism is expected in all BrC samples and can drive changes in the optical properties and chemical composition of aging organic aerosols.
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Affiliation(s)
- Silvan Müller
- Department
of Environmental Systems Science, ETH Zurich, Zurich 8092, Switzerland
| | - Chiara Giorio
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, United
Kingdom
- Department
of Chemical Sciences, University of Padova, Padova 35131, Italy
| | - Nadine Borduas-Dedekind
- Department
of Environmental Systems Science, ETH Zurich, Zurich 8092, Switzerland
- Department
of Chemistry, University of British Columbia, Vancouver V6T 1Z1, Canada
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Zhu X, Miller WL, Fichot CG. Simple Method to Determine the Apparent Quantum Yield Matrix of CDOM Photobleaching in Natural Waters. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:14096-14106. [PMID: 33095017 DOI: 10.1021/acs.est.0c03605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The photobleaching of chromophoric dissolved organic matter (CDOM) is considered an important loss process for CDOM absorption in sunlit natural waters, where it can regulate the biota's exposure to sunlight, surface solar heating, and dissolved organic matter dynamics. Despite its importance, this sink remains poorly quantified, primarily because of the difficulty of determining photobleaching apparent quantum yields (AQYs) that capture the dual spectral dependency of this process and are applicable to polychromatic sunlight. Here, we present a simple method to determine a CDOM photobleaching AQY matrix (AQY-M) for natural water samples that does not require any a priori assumptions about the spectral dependency of photobleaching. It combines controlled irradiation experiments, a partial least-square regression, and an optimization procedure to produce AQY-Ms that are spectrally coherent and optimized for modeling accurate photobleaching rates in natural waters. Water temperature and the solar exposure history of CDOM had a major influence on the magnitude and spectral characteristics of the AQY-M. These factors should be considered when determining the AQY-M of samples and provide constraints when modeling photobleaching rates in natural waters. We expect that this effective method will provide future studies with a robust means to characterize and understand the variability of AQY-M in natural waters.
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Affiliation(s)
- Xiaohui Zhu
- Department of Earth and Environment, Boston University, Boston, Massachusetts 02215, United States
| | - William L Miller
- Department of Marine Sciences, University of Georgia, Athens, Georgia 30605, United States
| | - Cédric G Fichot
- Department of Earth and Environment, Boston University, Boston, Massachusetts 02215, United States
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Schendorf TM, Del Vecchio R, Bianca M, Blough NV. Combined Effects of pH and Borohydride Reduction on Optical Properties of Humic Substances (HS): A Comparison of Optical Models. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:6310-6319. [PMID: 31063364 DOI: 10.1021/acs.est.9b01516] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The combined effects of pH and borohydride reduction on the optical properties of a series of humic substances and a lignin model were examined to probe the molecular moieties and interactions that give rise to the observed optical properties of these materials. Increasing the pH from 2 to 12 produced significantly enhanced absorption across the spectra of all samples, with distinct spectral responses observed over pH ranges attributable to the deprotonation of carboxylic acids and phenols. Borohydride reduction substantially attenuated the broadband absorption enhancements with pH, clearly indicating that the loss of absorption due to ketone/aldehyde reduction is coupled with the pH-dependent increase in absorption due to deprotonation of carboxylic acids and phenols. These results cannot be easily explained by a superposition of the spectra of independently absorbing chromophores (superposition model) but are readily interpretable within a charge transfer (CT) model. Changes of fluorescence emission with pH for both untreated and borohydride reduced samples suggest that a pH-dependent structural reorganization of the HS may also be influencing the fluorescence emission. Independent of optical model, these results demonstrate that chemical tests targeted to specific moieties can identify distinct structural differences among HS sources as well as provide insight into the molecular moieties and interactions that produce the observed optical and photochemical properties.
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McKay G, Korak JA, Rosario-Ortiz FL. Temperature Dependence of Dissolved Organic Matter Fluorescence. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:9022-9032. [PMID: 30028602 DOI: 10.1021/acs.est.8b00643] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The temperature dependence of organic matter fluorescence apparent quantum yields (Φf) was measured for a diverse set of organic matter isolates (i.e., marine aquatic, microbial aquatic, terrestrial aquatic, and soil) in aqueous solution and for whole water samples to determine apparent activation energies ( Ea) for radiationless decay processes of the excited singlet state. Ea was calculated from temperature dependent Φf data obtained by steady-state methods using a simplified photophysical model and the Arrhenius equation. All aquatic-derived isolates, all whole water samples, and one soil-derived fulvic acid isolate exhibited temperature dependent Φf values, with Ea ranging from 5.4 to 8.4 kJ mol-1 at an excitation wavelength of 350 nm. Conversely, soil humic acid isolates exhibited little or no temperature dependence in Φf. Ea varied with excitation wavelength in most cases, typically exhibiting a decrease between 350 and 500 nm. The narrow range of Ea values observed for these samples when compared to literature Ea values for model fluorophores (∼5-30 kJ mol-1) points to a similar photophysical mechanism for singlet excited states nonradiative inactivation across organic matter isolates of diverse source and character. In addition, this approach to temperature dependent fluorescence analysis provides a fundamental, physical basis, in contrast to existing empirical relationships, for correcting online fluorescence sensors for temperature effects.
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Affiliation(s)
- Garrett McKay
- Department of Civil, Environmental, and Architectural Engineering , University of Colorado , Boulder , Colorado 80309 , United States
| | - Julie A Korak
- Department of Civil, Environmental, and Architectural Engineering , University of Colorado , Boulder , Colorado 80309 , United States
| | - Fernando L Rosario-Ortiz
- Department of Civil, Environmental, and Architectural Engineering , University of Colorado , Boulder , Colorado 80309 , United States
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5
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Dutta Majumdar R, Bliumkin L, Lane D, Soong R, Simpson M, Simpson AJ. Analysis of DOM phototransformation using a looped NMR system integrated with a sunlight simulator. WATER RESEARCH 2017; 120:64-76. [PMID: 28478296 DOI: 10.1016/j.watres.2017.04.067] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Revised: 04/26/2017] [Accepted: 04/28/2017] [Indexed: 06/07/2023]
Abstract
Photochemical transformation plays an important role in functionalizing and degrading dissolved organic matter (DOM), producing one of the most complex mixtures known. In this study, using a flow-based design, nuclear magnetic resonance (NMR) spectroscopy is directly interfaced with a sunlight simulator enabling the study of DOM photodegradation in situ with high temporal resolution over 5 days. Samples from Suwannee River (Florida), Nordic Reservoir (Norway), and Pony Lake (Antarctic) are studied. Phototransformation of DOM is dominated by the degradation of aromatics and unsaturated structures (many arising from lignin) into carboxylated and hydroxylated products. To assess longer term changes, the samples were continuously irradiated for 17.5 days, followed by the identification a wide range of compounds and assessment of their fate using off-line 2D-NMR. This study demonstrates the applicability of the looped system to follow degradation in a non-targeted fashion (the mixture as a whole) and target analysis (tracing specific metabolites), which holds great potential to study the fate and transformation of contaminants and nutrients in the presence of DOM. It also demonstrates that components that remain unresolved in 1D NMR can be identified using 2D methods.
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Affiliation(s)
- Rudraksha Dutta Majumdar
- Environmental NMR Centre, Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, M1C 1A4, Canada
| | - Liora Bliumkin
- Environmental NMR Centre, Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, M1C 1A4, Canada
| | - Daniel Lane
- Environmental NMR Centre, Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, M1C 1A4, Canada
| | - Ronald Soong
- Environmental NMR Centre, Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, M1C 1A4, Canada
| | - Myrna Simpson
- Environmental NMR Centre, Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, M1C 1A4, Canada
| | - André J Simpson
- Environmental NMR Centre, Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario, M1C 1A4, Canada.
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Sharpless CM, Blough NV. The importance of charge-transfer interactions in determining chromophoric dissolved organic matter (CDOM) optical and photochemical properties. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2014; 16:654-71. [PMID: 24509887 DOI: 10.1039/c3em00573a] [Citation(s) in RCA: 149] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Absorption of sunlight by chromophoric dissolved natural organic matter (CDOM) is environmentally significant because it controls photic zone depth and causes photochemistry that affects elemental cycling and contaminant fate. Both the optics (absorbance and fluorescence) and photochemistry of CDOM display unusual properties that cannot easily be ascribed to a superposition of individual chromophores. These include (i) broad, unstructured absorbance that decreases monotonically well into the visible and near IR, (ii) fluorescence emission spectra that all fall into a single envelope regardless of the excitation wavelength, and (iii) photobleaching and photochemical quantum yields that decrease monotonically with increasing wavelength. In contrast to a simple superposition model, these phenomena and others can be reasonably well explained by a physical model in which charge-transfer interactions between electron donating and accepting chromophores within the CDOM control the optical and photophysical properties. This review summarizes current understanding of the processes underlying CDOM photophysics and photochemistry as well as their physical basis.
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Affiliation(s)
- Charles M Sharpless
- Department of Chemistry, University of Mary Washington, Fredericksburg, VA 22401, USA.
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Sharpless CM, Aeschbacher M, Page SE, Wenk J, Sander M, McNeill K. Photooxidation-induced changes in optical, electrochemical, and photochemical properties of humic substances. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:2688-96. [PMID: 24383955 DOI: 10.1021/es403925g] [Citation(s) in RCA: 147] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Two aquatic fulvic acids and one soil humic acid were irradiated to examine the resulting changes in the redox and photochemical properties of the humic substances (HS), the relationship between these changes, and their relationship to changes in the optical properties. For all HS, irradiation caused photooxidation, as shown by decreasing electron donating capacities. Photooxidation was accompanied by decreases in specific UV absorbance and increases in the E2/E3 ratio (254 nm absorbance divided by that at 365 nm). In contrast, photooxidation had little effect on the samples' electron accepting capacities. The coupled changes in optical and redox properties for the different HS suggest that phenols are an important determinant of aquatic HS optical properties and that quinones may play a more important role in soil HS. Apparent quantum yields of H2O2, ·OH, and triplet HS decreased with photooxidation, thus demonstrating selective destruction of HS photosensitizing chromophores. In contrast, singlet oxygen ((1)O2) quantum yields increased, which is ascribed to either decreased (1)O2 quenching within the HS microenvironment or the presence of a pool of photostable sensitizers. The photochemical properties show clear trends with SUVA and E2/E3, but the trends differ substantially between aquatic and soil HS. Importantly, photooxidation produces a relationship between the (1)O2 quantum yield and E2/E3 that differs distinctly from that observed with untreated HS. This finding suggests that there may be watershed-specific correlations between HS chemical and optical properties that reflect the dominant processes controlling the HS character.
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Affiliation(s)
- Charles M Sharpless
- Department of Chemistry, University of Mary Washington , Fredericksburg, Virginia 22401, United States
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Nelson NB, Siegel DA. The global distribution and dynamics of chromophoric dissolved organic matter. ANNUAL REVIEW OF MARINE SCIENCE 2012; 5:447-76. [PMID: 22809178 DOI: 10.1146/annurev-marine-120710-100751] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Chromophoric dissolved organic matter (CDOM) is a ubiquitous component of the open ocean dissolved matter pool, and is important owing to its influence on the optical properties of the water column, its role in photochemistry and photobiology, and its utility as a tracer of deep ocean biogeochemical processes and circulation. In this review, we discuss the global distribution and dynamics of CDOM in the ocean, concentrating on developments in the past 10 years and restricting our discussion to open ocean and deep ocean (below the main thermocline) environments. CDOM has been demonstrated to exert primary control on ocean color by its absorption of light energy, which matches or exceeds that of phytoplankton pigments in most cases. This has important implications for assessing the ocean biosphere via ocean color-based remote sensing and the evaluation of ocean photochemical and photobiological processes. The general distribution of CDOM in the global ocean is controlled by a balance between production (primarily microbial remineralization of organic matter) and photolysis, with vertical ventilation circulation playing an important role in transporting CDOM to and from intermediate water masses. Significant decadal-scale fluctuations in the abundance of global surface ocean CDOM have been observed using remote sensing, indicating a potentially important role for CDOM in ocean-climate connections through its impact on photochemistry and photobiology.
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10
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Harrison JW, Smith REH. Effects of ultraviolet radiation on the productivity and composition of freshwater phytoplankton communities. Photochem Photobiol Sci 2009; 8:1218-32. [PMID: 19707611 DOI: 10.1039/b902604e] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The net influence of ultraviolet radiation (UVR; 280-400 nm) on freshwater phytoplankton communities depends on the photon flux density, duration, and spectral quality of exposure and the UVR sensitivity of the assemblage in terms of photosynthetic impairment, biochemical composition, and nutrient assimilation mechanisms. Such effects are mitigated to varying degrees by photoacclimation and selective adaptation at the community level. Variation in UVR penetration among lakes is considerable, largely due to differences in chromophoric dissolved organic matter concentrations. Documented losses of areal daily primary production in lakes due to UVR range from negligible (2.5%) to appreciable (26%). UVR has the potential to alter algal biochemical composition and therefore indirectly affect higher trophic levels. There is evidence that algal nutritional status can influence UVR sensitivity, and that UVR can inhibit uptake and assimilation of inorganic nutrients, but results have been inconsistent. Taxonomic variability in susceptibility to the effects of UVR exists, and likely reflects variation in cell size and shape, concentrations of photoprotective pigments, and capacity to repair UVR photodamage. Suggestions for future research include: (1) resolution of taxon-specific UVR responses by way of single-cell techniques (e.g. enzyme-labelled fluorescence assays, microscope-based variable fluorometers) and (2) systematic comparative studies to link UVR exposure in natural habitats to community responses using the biological weighting function modelling approach. A more robust understanding of how sensitivity to UVR varies according to taxon and habitat is needed if predictions of its role in ecosystem functioning, particularly in connection with climate change, are to be meaningful.
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Affiliation(s)
- Joel W Harrison
- University of Waterloo, 200 University Avenue West, Waterloo, ON, Canada N2L3G1.
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Boyle ES, Guerriero N, Thiallet A, Del Vecchio R, Blough NV. Optical properties of humic substances and CDOM: relation to structure. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2009; 43:2262-8. [PMID: 19452872 DOI: 10.1021/es803264g] [Citation(s) in RCA: 126] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The spectral dependencies of absorption and fluorescence emission (emission maxima (lamdamax), quantum yields (phi), and mean lifetimes (taum)) were acquired for a commercial lignin, Suwannee River humic (SRHA) and fulvic (SRFA) acids, and a series solid phase extracts (C18) from the Middle Atlantic Bight (MAB extracts). These parameters were compared with the relative average size and total lignin phenol content (TLP). TLP was strongly correlated with absorption at 280 and 355 nm for the MAB extracts, SRHA, and SRFA. The spectral dependence of lamdamax, phi), and taum was very similar for all samples, suggesting a common photophysical and thus structural basis. A strong decrease of phi and taum with increasing average size indicates that intramolecular interactions must be important. When combined with previous work, the results lead us to conclude that the optical properties commonly associated with terrestrial humic substances and chromophoric dissolved organic matter arise primarily from an ensemble of partially oxidized lignins derived from vascular plant sources. Theyfurther provide additional support for an electronic interaction model in which intramolecular energy transfer, excited-state electron transfer, as well as charge transfer likely play important roles in producing the observed optical and photochemical properties of these materials.
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Affiliation(s)
- Erin S Boyle
- Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA
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Tzortziou M, Osburn CL, Neale PJ. Photobleaching of Dissolved Organic Material from a Tidal Marsh-Estuarine System of the Chesapeake Bay†. Photochem Photobiol 2007; 83:782-92. [PMID: 17645648 DOI: 10.1111/j.1751-1097.2007.00142.x] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Wetlands and tidal marshes in the Rhode River estuary of the Chesapeake Bay act as important sources of dissolved organic carbon and strongly absorbing dissolved organic matter (DOM) for adjacent estuarine waters. The effects of solar exposure on the photochemical degradation of colored DOM (CDOM) were examined for material derived from different sources (estuarine and freshwater parts of the Rhode River, sub-watershed stream, marshes) in this estuarine ecosystem. Consistent with changes in fluorescence emission, absorption loss upon exposure to different portions of the solar spectrum (i.e. different long-pass cut-off filters) occurred across the entire spectrum but the wavelength of maximum photobleaching decreased as the cut-off wavelength of the filter decreased. Our results illustrate that solar exposure can cause either an increase or a decrease in the CDOM absorption spectral slope, S(CDOM), depending on the spectral quality of irradiation and, thus, on the parameters (e.g. atmospheric composition, concentration of UV-absorbing water constituents) that affect the spectral characteristics of the light to which CDOM is exposed. We derived a simple spectral model for describing the effects of solar exposure on CDOM optical quality. The model accurately, and consistently, predicted the observed dependence of CDOM photobleaching on the spectral quality of solar exposure.
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Affiliation(s)
- Maria Tzortziou
- Earth System Science Interdisciplinary Center, University of Maryland, College Park, MD, USA.
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Hefner KH, Fisher JM, Ferry JL. A multifactor exploration of the photobleaching of Suwannee River dissolved organic matter across the freshwater/saltwater interface. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2006; 40:3717-22. [PMID: 16830532 DOI: 10.1021/es052513h] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
A four factor central composite experimental design was applied to explore the photobleaching of Suwannee River dissolved organic matter (SRDOM) at 350 nm as a function of the tetravariate system of [SRDOM], total [Fe(III)], [NO3-], and salinity. The ranges of each factor were setto cover their likely concentrations atthe freshwater/ saltwater interface, to encompass the possible conditions encountered during the transition from the terrestrial to marine environment. Each experiment was carried out using a minimum of 25 different initial conditions, with 3-6 replicates/condition. The resulting data set mapped out the effects of multiple photoactive components on the rate of photobleaching. Under the conditions tested (nominally total [Fe(III)] 0.00-4.00 microM; [NO3-] 0.00-60.00 microM; SRDOM 0.00-30.00 mg/L; salinity 0.00-35.00 ppt, polychromatic illumination, pH 8.2) all samples photobleached at all wavelengths measured, and the absorption at 350 nm bleached the most rapidly. The most important factor for predicting the rate of photobleaching at 350 nm was the initial loading of SRDOM; the effect of all other factors on photobleaching was not significant at the 95% level of confidence. Varied salinity, Fe(III), or added D2O had no effect on the rate of photobleaching, indicating that hydroxyl radical, singlet oxygen, and superoxide did not contribute significantly to the loss of the chromophore at 350 nm. The addition of hydroquinone or thiosulfate inhibited photobleaching, suggesting photobleaching may depend on a weaker oxidant such as the excited-state acceptors (derived from SRDOM directly) produced during photoinitiated charge-transfer processes. The advantages of multifactor experimental techniques for exploring SRDOM photochemistry are discussed.
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Affiliation(s)
- Kelly H Hefner
- Department of Chemistry and Biochemistry, University of South Carolina Columbia, South Carolina 29208, USA
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Forde TS, Hanley QS. Following FRET through five energy transfer steps: spectroscopic photobleaching, recovery of spectra, and a sequential mechanism of FRET. Photochem Photobiol Sci 2005; 4:609-16. [PMID: 16052267 DOI: 10.1039/b416478d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report the acquisition and analysis of spectrally resolved photobleaching data from a model system designed to exhibit FRET. Spectrally resolved photobleaching can be used to determine the presence of FRET in these systems and to investigate multi-step mechanisms of energy transfer. The model system was a previously described set of fluorescent beads consisting of a system of six fluorophores. In standard photobleaching experiments to determine FRET, bleaching of an acceptor molecule resulting in recovery of donor intensity or changes in photobleaching kinetics are used as indicators of FRET. Here, we use the Bateman equations to model growth and decay in a photobleaching experiment. Linked donor-acceptor growth and decay is used as an indicator of FRET. The apparatus required is relatively simple when compared to lifetime imaging systems. Several data analysis strategies, rigorous model building, global fitting procedures, and error analysis are presented. Using these procedures a five-step sequential mechanism of energy transfer was selected for these beads.
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Affiliation(s)
- Toni S Forde
- Department of Biological and Chemical Sciences, University of the West Indies, Cave Hill Campus, St. Michael, Barbados
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