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Croft L, Matheson P, Butterworth NJ, McGaughran A. Fitness consequences of population bottlenecks in an invasive blowfly. Mol Ecol 2024; 33:e17492. [PMID: 39136044 DOI: 10.1111/mec.17492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 07/14/2024] [Accepted: 08/02/2024] [Indexed: 08/28/2024]
Abstract
Invasive species often undergo demographic bottlenecks that cause a decrease in genetic diversity and associated reductions in population fitness. Despite this, they manage to thrive in novel environments. Investigating the effects of inbreeding and genetic bottlenecks on population fitness for invasive species is, therefore, key to understanding how they may survive in new environments. We used the blowfly Calliphora vicina (Sciences, Mathématiques et Physique, 1830, 2, 1), which is native to Europe and was introduced to Australia and New Zealand, to examine the effects of genetic diversity on population fitness. We first collected 59 samples from 15 populations across New Zealand and one in Australia, and used 20,501 biallelic SNPs to investigate population genomic diversity, structure and admixture. We then explored the impacts of repeated experimental bottlenecks on population fitness by creating inbred and outbred lines of C. vicina and measuring a variety of fitness traits. In wild-caught samples, we found low overall genetic diversity, signals of genetic admixture and limited (<3%) genetic differentiation between North and South Island populations, with genetic links between the South Island and Australia. Following experimental bottlenecks, we found significant reductions in fitness for inbred lines. However, fitness effects were not felt equally across all phenotypic traits. Moreover, they were not enough to cause population collapse in any experimental line, suggesting that C. vicina (when under relaxed selection, as in laboratory settings) may be able to compensate for population bottlenecks even when highly inbred. Our results demonstrate the value of a tractable experimental system for investigating processes that may facilitate or hamper biological invasion.
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Affiliation(s)
- Lilly Croft
- Te Aka Mātuatua - School of Science, University of Waikato, Hamilton, New Zealand
| | - Paige Matheson
- Te Aka Mātuatua - School of Science, University of Waikato, Hamilton, New Zealand
| | | | - Angela McGaughran
- Te Aka Mātuatua - School of Science, University of Waikato, Hamilton, New Zealand
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2
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Kwiatkowski SC, Sanford MR, Donley M, Welch K, Kahn R. Simplified COI barcoding of blow, flesh, and scuttle flies encountered in medicolegal investigations. Forensic Sci Med Pathol 2024; 20:412-422. [PMID: 37222900 DOI: 10.1007/s12024-023-00653-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/10/2023] [Indexed: 05/25/2023]
Abstract
Accurate insect identification is critical to the estimation of time of colonization (TOC) and post-mortem interval (PMI) in medicolegal death investigations. DNA testing is advantageous because it enables the identification of immature specimens that may not be identified based on morphology alone. We describe here a simplified DNA barcoding method for identifying relevant species that may be implemented by forensic genetics laboratories. A cytochrome oxidase (COI) fragment is analyzed after PCR amplification with a single primer set. The method is effective for many species commonly encountered in death investigations in the USA: members of blowfly genera Calliphora, Chrysomya, Cochliomyia, Lucilia, and Phormia; members of the flesh fly genera Blaesoxipha, Oxysarcodexia, Ravinia, and Sarcophaga; and the scuttle fly Megaselia scalaris. We tested the method on specimens with verified identifications and used it to build a collection of reference sequences from specimens collected in Harris County, Texas. We show here the correct identification of larvae, pupae, and pupal exuviae from the medicolegal casework.
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Affiliation(s)
- Sam C Kwiatkowski
- Harris County Institute of Forensic Sciences, 1861 Old Spanish Trail, Houston, TX, 77054, USA.
| | - Michelle R Sanford
- Harris County Institute of Forensic Sciences, 1861 Old Spanish Trail, Houston, TX, 77054, USA
| | - Michael Donley
- Harris County Institute of Forensic Sciences, 1861 Old Spanish Trail, Houston, TX, 77054, USA
| | - Katherine Welch
- Harris County Institute of Forensic Sciences, 1861 Old Spanish Trail, Houston, TX, 77054, USA
| | - Roger Kahn
- Harris County Institute of Forensic Sciences, 1861 Old Spanish Trail, Houston, TX, 77054, USA
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3
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Owings CG, Banerjee A, Picard CJ. Temporal population genetic structure of Phormia regina (Diptera: Calliphoridae). JOURNAL OF MEDICAL ENTOMOLOGY 2024; 61:554-566. [PMID: 37862592 DOI: 10.1093/jme/tjad115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/23/2023] [Accepted: 08/15/2023] [Indexed: 10/22/2023]
Abstract
The genetic structure of forensically important blow fly (Brauer & Bergenstamm) (Diptera: Calliphoridae) populations has remained elusive despite high relatedness within wild-caught samples. This research aimed to determine if the implementation of a high-resolution spatiotemporal sampling design would reveal latent genetic structure among blow fly populations and to elucidate any environmental impacts on observed patterns of genetic structure. Adult females of the black blow fly, Phormia regina (Meigen) (Diptera: Calliphoridae), were collected from 9 urban parks in Indiana, USA over 3 yr and genotyped at 6 polymorphic microsatellite loci. The data analysis involved 3 clustering methods: principal coordinate analysis (PCoA), discriminant analysis of principal components (DAPC), and STRUCTURE. While the PCoA did not uncover any discernible clustering patterns, the DAPC and STRUCTURE analyses yielded significant results, with 9 and 4 genetic clusters, respectively. Visualization of the STRUCTURE bar plot revealed N = 11 temporal demarcations indicating barriers to gene flow. An analysis of molecular variance of these STRUCTURE-inferred populations supported strong temporally driven genetic differentiation (FST = 0.048, F'ST = 0.664) relative to geographic differentiation (FST = 0.009, F'ST = 0.241). Integrated Nested Laplace Approximation and Boosted Regression Tree analyses revealed that collection timepoint and 4 main abiotic factors (temperature, humidity, precipitation, and wind speed) were associated with the genetic subdivisions observed for P. regina. A complex interplay between environmental conditions, the unique reproductive strategies of the blow fly, and the extensive dispersal abilities of these organisms likely drives the strong genetic structure of P. regina in the Midwestern US.
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Affiliation(s)
- Charity G Owings
- Department of Entomology and Plant Pathology, University of Tennessee, 2505 E. J. Chapman Dr., Knoxville, TN 37996, USA
- Department of Biology, Indiana University-Purdue University Indianapolis, 723 W Michigan Street, SL 306, Indianapolis, IN 46202, USA
| | - Aniruddha Banerjee
- Department of Geography, Indiana University-Purdue University Indianapolis, 425 University Boulevard, Cavanaugh Hall 441, Indianapolis, IN 46202, USA
| | - Christine J Picard
- Department of Biology, Indiana University-Purdue University Indianapolis, 723 W Michigan Street, SL 306, Indianapolis, IN 46202, USA
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Croft L, Matheson P, Flemming C, Butterworth NJ, McGaughran A. Population structure and interspecific hybridisation of two invasive blowflies (Diptera: Calliphoridae) following replicated incursions into New Zealand. Ecol Evol 2024; 14:e10832. [PMID: 38192906 PMCID: PMC10772223 DOI: 10.1002/ece3.10832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 12/13/2023] [Indexed: 01/10/2024] Open
Abstract
Rates of biological invasion are increasing globally, with associated negative effects on native biodiversity and ecosystem services. Among other genetic processes, hybridisation can facilitate invasion by producing new combinations of genetic variation that increase adaptive potential and associated population fitness. Yet the role of hybridisation (and resulting gene flow) in biological invasion in invertebrate species is under-studied. Calliphora hilli and Calliphora stygia are blowflies proposed to have invaded New Zealand separately from Australia between 1779 and 1841, and are now widespread throughout the country. Here, we analysed genome-wide single nucleotide polymorphisms (SNPs), generating genotyping-by-sequencing data for 154 individuals collected from 24 populations across New Zealand and Australia to assess the extent of gene flow and hybridisation occurring within and between these blowflies and to better understand their overall population structure. We found that New Zealand populations of both species had weak genetic structure, suggesting high gene flow and an absence of dispersal limitations across the country. We also found evidence that interspecific hybridisation is occurring in the wild between C. hilli and C. stygia in both the native and invasive ranges, and that intraspecific admixture is occurring among populations at appreciable rates. Collectively, these findings provide new insights into the population structure of these two invasive invertebrates and highlight the potential importance of hybridisation and gene flow in biological invasion.
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Affiliation(s)
- Lilly Croft
- Te Aka Mātuatua – School of ScienceUniversity of WaikatoHamiltonNew Zealand
| | - Paige Matheson
- Te Aka Mātuatua – School of ScienceUniversity of WaikatoHamiltonNew Zealand
| | - Chloe Flemming
- Te Aka Mātuatua – School of ScienceUniversity of WaikatoHamiltonNew Zealand
| | | | - Angela McGaughran
- Te Aka Mātuatua – School of ScienceUniversity of WaikatoHamiltonNew Zealand
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Meng F, Han H, Wang M, Jiang Y, Pi Z, Qu Y, Liu Z, Cai J. Characterized Gene Repertoires and Functional Gene Reference for Forensic Entomology: Genomic and Developmental Transcriptomic Analysis of Aldrichina grahami (Diptera: Calliphoridae). JOURNAL OF MEDICAL ENTOMOLOGY 2022; 59:810-819. [PMID: 35139213 DOI: 10.1093/jme/tjac004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Indexed: 06/14/2023]
Abstract
Many flies of Diptera are common entomological evidence employed in forensic investigation. Exploring the existence of inter- and intra-species genomic differences of forensically relevant insects is of great importance. Aldrichina grahami is a common blow fly species of forensic importance. The present study characterized the gene repertoires of A. grahami, and provides insights into issues related to forensic entomology, such as necrophagous behavior, gene family features, and developmental patterns. Gene families were clustered and classified according to their function in different aspects of the necrophagous lifestyle, generating several gene repertoires. The genes under positive selection pressure and evolutionary changes were screen and identified. Moreover, genes that exhibited potential prediction value in the post mortem interval (PMI) estimation and development of immature stages were subjected to analysis based on the developmental transcriptome. Related insect species were compared at the genomic level to reveal the genes associated with necrophagous behaviors. The expression of selected genes in separated repositories was verified using qPCR. This work was conducted using a high-quality chromosome-level genome assembly of A. grahami and its developmental transcriptome. The findings will facilitate future research on A. grahami and the other forensically important species.
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Affiliation(s)
- Fanming Meng
- School of Basic Medicine, Central South University, Changsha, China
| | - Han Han
- School of Basic Medicine, Central South University, Changsha, China
| | - Mo Wang
- Key Laboratory for Conserving Wildlife with Small Populations in Yunnan, Faculty of Biodiversity Conservation, Southwest Forestry University, Kunming, China
| | - Yangshuai Jiang
- School of Basic Medicine, Central South University, Changsha, China
| | - Zhiyun Pi
- School of Basic Medicine, Central South University, Changsha, China
| | - Yihong Qu
- School of Basic Medicine, Central South University, Changsha, China
| | - Zhuoying Liu
- School of Basic Medicine, Central South University, Changsha, China
| | - Jifeng Cai
- School of Basic Medicine, Central South University, Changsha, China
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Bauer AM, Bauer A, Tomberlin JK. Effects of Photoperiod on the Development of Forensically Important Blow Fly Chrysomya rufifacies (Diptera: Calliphoridae). JOURNAL OF MEDICAL ENTOMOLOGY 2020; 57:1382-1389. [PMID: 32303768 DOI: 10.1093/jme/tjaa058] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2019] [Indexed: 06/11/2023]
Abstract
Estimation of the time of colonization (TOC) is often based on laboratory studies that document arthropod development. Precise data for forensically important species, such as blow flies (Diptera: Calliphoridae), are essential for accuracy in the estimate of TOC. Calliphorid development is a quantitative trait and thus depends on a host of variables. In calliphorids, studies showed photoperiod can play a role in development. However, there has been little research to date on the effects of photoperiod, and available data indicate the impact is species-specific. In this study, the effects of photoperiod on the development of Chrysomya rufifacies (Macquart), were examined. Chrysomya rufifacies is a fly of great medical and legal importance and is often encountered on vertebrate remains in temperate and tropic regions throughout the world, including North and Central America, Asia, and Australia. Larvae were reared under light regimes of 12, 16, and 24 h of light at 28.5 ± 0.0°C, 86.2 ± 0.3 RH. Minimum development time for each stage did not differ significantly for the applied photoperiods, nor were there significant differences in total minimum postembryonic development time. Photoperiod did not significantly affect larval size or growth rate. The data suggest that light durations investigated in this study do not influence the development of C. rufifacies. This indicates that photoperiod may not be a concern for forensic entomologists in Texas, United States, or other areas with similar conditions when estimating the TOC for this species. Validation efforts are encouraged to verify this conclusion.
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Affiliation(s)
- Amely M Bauer
- Department of Entomology, Texas A&M University - 2475 TAMU, College Station, TX
- Department of Animal Evolution and Biodiversity, University of Goettingen - Untere Karspuele 2, Goettingen, Germany
| | - Alexandra Bauer
- Department of Entomology, Texas A&M University - 2475 TAMU, College Station, TX
- Department of Animal Evolution and Biodiversity, University of Goettingen - Untere Karspuele 2, Goettingen, Germany
| | - Jeffery K Tomberlin
- Department of Entomology, Texas A&M University - 2475 TAMU, College Station, TX
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Tembe D, Mukaratirwa S. Forensic entomology research and application in southern Africa: A scoping review. S AFR J SCI 2020. [DOI: 10.17159/sajs.2020/6065] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
The use of forensic entomology is well established in the northern hemisphere, but is still emerging in the southern hemisphere, where most of the current research is not explicitly undertaken in the context of forensics. In this review, we provide an update on the current status of forensic entomology research and its application in relation to estimation of post-mortem interval in various criminal investigations ranging from murder cases, cases of human neglect and the poaching of wildlife in southern Africa, among other issues. A literature search was conducted using Google Scholar, PubMed, Scopus and EBSCOhost databases. The studies reviewed were focused on arthropod diversity during different stages of carcass decomposition, effect of seasons on the abundance and diversity of carrion feeding arthropod species during carcass decomposition, and diurnal and nocturnal oviposition of forensically important insect species during carcass decomposition. It was further observed that arthropod species that established on a decomposing carcass are potentially useful in the estimation of post-mortem interval and determining clues in cases of criminal investigations. The review confirmed the paucity of research in forensic entomology, and its application in southern Africa. Future studies on the research and application of forensic entomology in various criminal investigation scenarios – such as murder cases, human neglect, and wildlife poaching in southern Africa – are therefore needed. Significance: • Forensic entomology research and its application is lagging in southern Africa. • There is seasonal variation in the arthropod species used for estimation of post-mortem intervals in southern Africa. • Identification of arthropod species diversity in the region has potential for application in forensic investigations.
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Affiliation(s)
- Danisile Tembe
- School of Life Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Durban, South Africa
| | - Samson Mukaratirwa
- School of Life Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Durban, South Africa
- *Current: One Health Center for Zoonoses and Tropical and Veterinary Medicine, Ross University School of Veterinary Medicine, Basseterre, West Indies
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Bauer A, Bauer AM, Tomberlin JK. Impact of diet moisture on the development of the forensically important blow fly Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae). Forensic Sci Int 2020; 312:110333. [PMID: 32480285 DOI: 10.1016/j.forsciint.2020.110333] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 05/04/2020] [Accepted: 05/07/2020] [Indexed: 11/25/2022]
Abstract
The secondary screwworm, Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae), is a carrion-breeding species of veterinary, medical, and forensic importance. It is very abundant in the Nearctic and Neotropical regions and is one of the most common colonizers of vertebrate remains in the southern United States. Therefore, it is of great evidential value in estimating the minimum time of colonization (TOC) of remains related to forensic investigations. So far, studies have investigated the effects of several biotic and abiotic factors on C. macellaria. However, no data on the specific impact of food source moisture on the larval development of this species are known to have been published. In this study, the effects of diet moisture on larval development time, larval length, and weight over time, as well as adult emergence and weight were investigated. C. macellaria was reared on diets prepared from freeze-dried bovine liver with varying moisture content (0.0, 33.0, 50.0, or 70.8%) at 25.6 °C, 77% RH, and 14:10 L:D. Frozen-thawed liver was used as a control. Water content was found to significantly impact immature development time and corresponding life-history traits, both within and among developmental stages of C. macellaria. This result indicates moisture content of the carrion source should be considered when estimating time of colonization and identification of immature stage of flies in forensic investigations. Furthermore, as diet moisture content significantly affected the dry mass of emerging adults, the mass of adults collected at a crime scene could provide useful information as it could be an indicator of the condition the remains were in during time of colonization, including the moisture content of the tissue.
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Affiliation(s)
- Alexandra Bauer
- Department of Entomology, Texas AM University - 2475 TAMU, College Station, TX 77843, USA; Department of Animal Evolution and Biodiversity, University of Goettingen - Untere Karspuele 2, 37073 Goettingen, Germany.
| | - Amely M Bauer
- Department of Entomology, Texas AM University - 2475 TAMU, College Station, TX 77843, USA; Department of Animal Evolution and Biodiversity, University of Goettingen - Untere Karspuele 2, 37073 Goettingen, Germany
| | - Jeffery K Tomberlin
- Department of Entomology, Texas AM University - 2475 TAMU, College Station, TX 77843, USA
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Kotzé Z, Tomberlin JK. Influence of Substrate Age on Oviposition Behavior of a Specialist Carrion Colonizer, Cochliomyia macellaria (Diptera: Calliphoridae). JOURNAL OF MEDICAL ENTOMOLOGY 2020; 57:686-690. [PMID: 31742609 DOI: 10.1093/jme/tjz214] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Indexed: 06/10/2023]
Abstract
The location and consumption of carrion by arthropods is a process that can be potentially distinguished temporally based on the makeup of the associated community. In fact, succession on carrion is a continuum of different generalist and specialist arthropods entering and leaving the system. Blow flies commonly associated with vertebrate remains are considered specialists due to their reliance on carrion as a source of food for offspring and protein for females. However, this specialization may come at a price; increased competition for resources and greater risk of local extinction. The present study examined the effects of the presence or absence of intraspecific colonization, carcass age, and exposure time on the colonization and oviposition responses of the specialist, primary colonizer, the secondary screw worm, Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae). Carcass age, exposure time, and colonization status significantly influenced the ovipositional response of C. macellaria. This species exhibited an oviposition preference for aged carcasses, with a tendency for higher oviposition after 8-h exposure time, but no preference between previously colonized or uncolonized carcasses. Mean egg hatch rate was also shown to be influenced by the aforementioned factors, with mean hatch rates varying between 81.26 and 90.97% across various treatments. These results provide insight into mechanisms driving succession on carrion, as well as highlight the variation observed in successional studies for the targeted species. Investigators relying on arthropod succession to indicate a time of colonization should proceed with caution in relying solely on the assumption primary colonizers only arrive and colonize fresh carrion.
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Affiliation(s)
- Zanthé Kotzé
- Department of Entomology, Texas A&M University, College Station, TX
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10
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Gemmellaro MD, Hamilton GC, Ware JL. Review of Molecular Identification Techniques for Forensically Important Diptera. JOURNAL OF MEDICAL ENTOMOLOGY 2019; 56:887-902. [PMID: 31173634 DOI: 10.1093/jme/tjz040] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Indexed: 06/09/2023]
Abstract
The medico-legal section of forensic entomology focuses on the analysis of insects associated with a corpse. Such insects are identified, and their life history characteristics are evaluated to provide information related to the corpse, such as postmortem interval and time of colonization. Forensically important insects are commonly identified using dichotomous keys, which rely on morphological characteristics. Morphological identifications can pose a challenge as local keys are not always available and can be difficult to use, especially when identifying juvenile stages. If a specimen is damaged, certain keys cannot be used for identification. In contrast, molecular identification can be a better instrument to identify forensically important insects, regardless of life stage or specimen completeness. Despite more than 20 yr since the first use of molecular data for the identification of forensic insects, there is little overlap in gene selection or phylogenetic methodology among studies, and this inconsistency reduces efficiency. Several methods such as genetic distance, reciprocal monophyly, or character-based methods have been implemented in forensic identification studies. It can be difficult to compare the results of studies that employ these different methods. Here we present a comprehensive review of the published results for the molecular identification of Diptera of forensic interest, with an emphasis on evaluating variation among studies in gene selection and phylogenetic methodology.
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Affiliation(s)
| | | | - Jessica L Ware
- Department of Entomology, Rutgers University, New Brunswick, NJ
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Picard CJ, Wells JD, Ullyot A, Rognes K. Amplified fragment length polymorphism analysis supports the valid separate species status of Lucilia caesar and L. illustris (Diptera: Calliphoridae). Forensic Sci Res 2017; 3:60-64. [PMID: 30483652 PMCID: PMC6197086 DOI: 10.1080/20961790.2017.1398286] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2017] [Accepted: 10/26/2017] [Indexed: 11/22/2022] Open
Abstract
Common DNA-based species determination methods fail to distinguish some blow flies in the forensically and medically important genus Lucilia Robineau-Desvoidy. This is a practical problem, and it has also been interpreted as casting doubt on the validity of some morphologically defined species. An example is Lucilia illustris and L. caesar, which co-occur in Europe whilst only L. illustris has been collected in North America. Reports that these species shared both mitochondrial and nuclear gene sequences, along with claims that diagnostic morphological characters are difficult to interpret, were used to question their separate species status. We report here that amplified fragment length polymorphism profiles strongly support the validity of both species based on both assignment and phylogenetic analysis, and that traditional identification criteria based on male and female genital morphology are more reliable than has been claimed.
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Affiliation(s)
- Christine J Picard
- Department of Biology & Forensic and Investigative Sciences Program, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA
| | - Jeffrey D Wells
- Department of Biological Sciences & International Forensic Research Institute, Florida International University, Miami, FL, USA
| | - Anne Ullyot
- Department of Biology & Forensic and Investigative Sciences Program, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA.,Biological Sciences, University of Chicago, Chicago, IL, USA
| | - Knut Rognes
- Department of Early Childhood Education, Faculty of Arts and Education, University of Stavanger, Stavanger, Norway
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Charabidze D, Gosselin M, Hedouin V. Use of necrophagous insects as evidence of cadaver relocation: myth or reality? PeerJ 2017; 5:e3506. [PMID: 28785513 PMCID: PMC5543926 DOI: 10.7717/peerj.3506] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Accepted: 06/06/2017] [Indexed: 11/20/2022] Open
Abstract
The use of insects as indicators of post-mortem displacement is discussed in many texts, courses and TV shows, and several studies addressing this issue have been published. Although the concept is widely cited, it is poorly understood, and only a few forensic cases have successfully applied such a method. The use of necrophagous insects as evidence of cadaver relocation actually involves a wide range of biological aspects. Distribution, microhabitat, phenology, behavioral ecology, and molecular analysis are among the research areas associated with this topic. This article provides the first review of the current knowledge and addresses the potential and limitations of different methods to evaluate their applicability. This work reveals numerous weaknesses and erroneous beliefs as well as many possibilities and research opportunities.
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Affiliation(s)
- Damien Charabidze
- CHU Lille, EA 7367 UTML - Unite de Taphonomie Medico-Legale, Univ Lille, Lille, France
| | - Matthias Gosselin
- Research Institute of Biosciences, Laboratory of Zoology, UMONS - Université de Mons, Mons, Belgium
| | - Valéry Hedouin
- CHU Lille, EA 7367 UTML - Unite de Taphonomie Medico-Legale, Univ Lille, Lille, France
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Yusseff-Vanegas SZ, Agnarsson I. DNA-barcoding of forensically important blow flies (Diptera: Calliphoridae) in the Caribbean Region. PeerJ 2017; 5:e3516. [PMID: 28761780 PMCID: PMC5531032 DOI: 10.7717/peerj.3516] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 06/07/2017] [Indexed: 11/20/2022] Open
Abstract
Correct identification of forensically important insects, such as flies in the family Calliphoridae, is a crucial step for them to be used as evidence in legal investigations. Traditional identification based on morphology has been effective, but has some limitations when it comes to identifying immature stages of certain species. DNA-barcoding, using COI, has demonstrated potential for rapid and accurate identification of Calliphoridae, however, this gene does not reliably distinguish among some recently diverged species, raising questions about its use for delimitation of species of forensic importance. To facilitate DNA based identification of Calliphoridae in the Caribbean we developed a vouchered reference collection from across the region, and a DNA sequence database, and further added the nuclear ITS2 as a second marker to increase accuracy of identification through barcoding. We morphologically identified freshly collected specimens, did phylogenetic analyses and employed several species delimitation methods for a total of 468 individuals representing 19 described species. Our results show that combination of COI + ITS2 genes yields more accurate identification and diagnoses, and better agreement with morphological data, than the mitochondrial barcodes alone. All of our results from independent and concatenated trees and most of the species delimitation methods yield considerably higher diversity estimates than the distance based approach and morphology. Molecular data support at least 24 distinct clades within Calliphoridae in this study, recovering substantial geographic variation for Lucilia eximia, Lucilia retroversa, Lucilia rica and Chloroprocta idioidea, probably indicating several cryptic species. In sum, our study demonstrates the importance of employing a second nuclear marker for barcoding analyses and species delimitation of calliphorids, and the power of molecular data in combination with a complete reference database to enable identification of taxonomically and geographically diverse insects of forensic importance.
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Affiliation(s)
| | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, United States of America
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14
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Hall MJR, Wall RL, Stevens JR. Traumatic Myiasis: A Neglected Disease in a Changing World. ANNUAL REVIEW OF ENTOMOLOGY 2015; 61:159-76. [PMID: 26667275 DOI: 10.1146/annurev-ento-010715-023655] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Traumatic myiasis, the parasitic infestation by fly larvae in traumatic lesions of the tissues of living vertebrates, is a serious medical condition in humans and a welfare and economic issue in domestic animals. New molecular studies are providing insights into its evolution and epidemiology. Nevertheless, its incidence in humans is generally underreported, particularly in tropical and subtropical regions. Myiasis in domestic animals has been studied more extensively, but continuous management is difficult and expensive. A key concern is the inadvertent introduction and global spread of agents of myiasis into nonendemic areas, facilitated by climate change and global transport. The incursion of the New World screwworm fly (Cochliomyia hominivorax) into Libya is the most notable of many such range shifts and demonstrates the potential risks of these parasites and the costs of removing them once established in a geographic area. Nevertheless, the insect agents of myiasis can be of societal benefit to forensic science and in medicine as an aid to wound treatment (larval therapy).
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Affiliation(s)
- Martin J R Hall
- Department of Life Sciences, Natural History Museum, London SW7 5BD, United Kingdom;
| | - Richard L Wall
- School of Biological Sciences, University of Bristol, Bristol BS8 1TQ, United Kingdom;
| | - Jamie R Stevens
- Department of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, United Kingdom;
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15
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Bao F, Wells JD. Population genetic structure of an invasive forensically important insect. Electrophoresis 2014; 35:3193-200. [PMID: 24934687 DOI: 10.1002/elps.201400108] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2014] [Revised: 05/15/2014] [Accepted: 06/11/2014] [Indexed: 11/12/2022]
Abstract
The forensic utility of an insect can depend in part on its population structure. Although some native North American species have been characterized in this fashion, information is lacking for species that were introduced from elsewhere and that might have lower genetic diversity and less geographic differentiation. We surveyed Chrysomya megacephala, an Asian fly present in the continental USA since the 1980s. Amplified Fragment Length Polymorphism profiles were generated from adult insects collected across Florida and in Mobile, Alabama. Analysis of Molecular Variance on 151 polymorphic loci found significant but very small variation among samples. STRUCTURE and principal coordinate analyses produced the same two clusters in the population, consistent with C. megacephala in Florida having originated from two separate source populations. A weak negative correlation between genetic and geographic distances probably reflected the geographic arrangement of the genetic clusters. A positive relative relatedness coefficient for each sample indicated that flies arriving at a bait within a short time were likely to be close relatives, consistent with the earlier results for native North American carrion flies. However, genetic diversity estimated for the introduced Florida C. megacephala was lower than for native species or for published data on Malaysian C. megacephala, perhaps reflecting the genetic effects of being introduced to a new geographic region. Genetic assignment, a method that has been proposed as a way to infer corpse postmortem relocation, was much less successful for C. megacephala compared to the native species, possibly reflecting a history of admixture.
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Affiliation(s)
- Fanchen Bao
- Department of Biological Sciences and International Forensic Research Institute, Florida International University, Miami, FL, USA
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Developmental variation among Cochliomyia macellaria Fabricius (Diptera: Calliphoridae) populations from three ecoregions of Texas, USA. Int J Legal Med 2014; 128:709-17. [DOI: 10.1007/s00414-014-1014-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2013] [Accepted: 04/23/2014] [Indexed: 10/25/2022]
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Farncombe KM, Beresford D, Kyle CJ. Characterization of microsatellite loci in Phormia regina towards expanding molecular applications in forensic entomology. Forensic Sci Int 2014; 240:122-5. [PMID: 24815994 DOI: 10.1016/j.forsciint.2014.04.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Revised: 04/17/2014] [Accepted: 04/19/2014] [Indexed: 11/17/2022]
Abstract
Forensic entomology involves the use of insects and arthropods to assist a spectrum of medico-criminal investigations that range from identifying cases of abuse, corpse movements, and most commonly, post mortem interval estimates. Many of these applications focus on the use of blowflies given their predicable life history characteristics in their larval stages. Molecular tools have become increasingly important in the unambiguous identification of larval blowfly species, however, these same tools have the potential to broaden the array of molecular applications in forensic entomology to include individual identifications and population assignments. Herein, we establish a microsatellite profiling system for the blowfly, Phormiaregina (Diptera: Calliphoridae). The goal being to create a system to identify the population genetic structure of this species and subsequently establish if these data are amenable to identifying corpse movements based on the geographic distribution of specific genetic clusters of blowflies. Using next generation sequencing technology, we screened a partial genomic DNA sequence library of P.regina, searching for di-, tetra-, and penta-nucleotide microsatellite loci. We identified and developed primers for 84 highly repetitive segments of DNA, of which 14 revealed consistent genotypes and reasonable levels of genetic variation (4-26 alleles/locus; heterozygosity ranged from 0.385 to 0.909). This study provides the first step in assessing the utility of microsatellite markers to track the movements and sources of corpses via blowflies.
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Affiliation(s)
- K M Farncombe
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4L8, Canada
| | - D Beresford
- Biology Department, Trent University, 1600 West Bank Drive Peterborough, Ontario K9J 7B8, Canada
| | - C J Kyle
- Forensic Science Department, Trent University, 1600 West Bank Drive Peterborough, Ontario K9J 7B8, Canada; Natural Resources DNA Profiling and Forensic Centre, Trent University, 1600 West Bank Drive Peterborough, Ontario K9J 7B8, Canada.
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Oleksa A. Weak isolation by distance in Diaperis boleti, a fungivorous saproxylic beetle. JOURNAL OF INSECT SCIENCE (ONLINE) 2014; 14:109. [PMID: 25204855 PMCID: PMC4212856 DOI: 10.1673/031.014.109] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/25/2012] [Accepted: 12/20/2012] [Indexed: 06/03/2023]
Abstract
Living in unstable habitats is expected to decrease the intensity of isolation by distance in populations through the need for frequent movements of individuals. Insects associated with fruiting bodies of fungi therefore are supposed to have weak spatial genetic structure of populations compared with those living in more stable habitats. With the use of an amplified fragment length polymorphism technique, this study investigated the isolation by distance, inbreeding, and genetic diversity in Diaperis boleti (L.) (Coleoptera: Tenebrionidae), a fungivorous saproxylic beetle that inhabits sporocarps of Laetiporus sulphureus (Bulliard) Murrill (Polyporales) on trees growing in highly-fragmented agricultural landscapes. Isolation by distance was tested with spatial autocorrelation analysis of kinship (individual-based approach) and correlating matrices of genetic and geographic distances with the Mantel test (population-based approach). These results were compared with the results obtained for saproxylic beetles living in the same landscape but differing in ecological preferences. It was shown that the species dependent on sporocarps of wooddecomposing fungi had higher variability, lower individual inbreeding, and less intensive isolation by distance pattern than saproxylic beetles living in tree hollows. It was also demonstrated that spatial autocorrelation analysis of kinship is a more sensitive approach for detecting finescale spatial genetic structure than the Mantel test.
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Affiliation(s)
- Andrzej Oleksa
- Institute of Experimental Biology, Kazimierz Wielki University, Chodkiewicza 30, 85-064 Bydgoszcz, Poland
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Jordaens K, Sonet G, Braet Y, De Meyer M, Backeljau T, Goovaerts F, Bourguignon L, Desmyter S. DNA barcoding and the differentiation between North American and West European Phormia regina (Diptera, Calliphoridae, Chrysomyinae). Zookeys 2013; 365:149-74. [PMID: 24453556 PMCID: PMC3890676 DOI: 10.3897/zookeys.365.6202] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Accepted: 12/06/2013] [Indexed: 11/26/2022] Open
Abstract
Phormia regina (the black fly) is a common Holarctic blow fly species which serves as a primary indicator taxon to estimate minimal post mortem intervals. It is also a major research model in physiological and neurological studies on insect feeding. Previous studies have shown a sequence divergence of up to 4.3% in the mitochondrial COI gene between W European and N American P. regina populations. Here, we DNA barcoded P. regina specimens from six N American and 17 W European populations and confirmed a mean sequence divergence of ca. 4% between the populations of the two continents, while sequence divergence within each continent was a ten-fold lower. Comparable mean mtDNA sequence divergences were observed for COII (3.7%) and cyt b (5.3%), but mean divergence was lower for 16S (0.4-0.6%). Intercontinental divergence at nuclear DNA was very low (≤ 0.1% for both 28S and ITS2), and we did not detect any morphological differentiation between N American and W European specimens. Therefore, we consider the strong differentiation at COI, COII and cyt b as intraspecific mtDNA sequence divergence that should be taken into account when using P. regina in forensic casework or experimental research.
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Affiliation(s)
- Kurt Jordaens
- Royal Museum for Central Africa, Department of Biology (JEMU), Leuvensesteenweg 13, 3080 Tervuren, Belgium
- University of Antwerp, Evolutionary Ecology Group, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Gontran Sonet
- Royal Belgian Institute of Natural Sciences, OD Taxonomy and Phylogeny (JEMU), Vautierstraat 29, 1000 Brussels, Belgium
| | - Yves Braet
- National Institute of Criminalistics and Criminology, Vilvoordsesteenweg 100, 1120 Brussels, Belgium
| | - Marc De Meyer
- Royal Museum for Central Africa, Department of Biology (JEMU), Leuvensesteenweg 13, 3080 Tervuren, Belgium
| | - Thierry Backeljau
- University of Antwerp, Evolutionary Ecology Group, Groenenborgerlaan 171, 2020 Antwerp, Belgium
- Royal Belgian Institute of Natural Sciences, OD Taxonomy and Phylogeny (JEMU), Vautierstraat 29, 1000 Brussels, Belgium
| | - Frankie Goovaerts
- University of Antwerp, Evolutionary Ecology Group, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Luc Bourguignon
- National Institute of Criminalistics and Criminology, Vilvoordsesteenweg 100, 1120 Brussels, Belgium
| | - Stijn Desmyter
- National Institute of Criminalistics and Criminology, Vilvoordsesteenweg 100, 1120 Brussels, Belgium
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Parasite epidemiology in a changing world: can molecular phylogeography help us tell the wood from the trees? Parasitology 2012; 139:1924-38. [PMID: 22917112 DOI: 10.1017/s0031182012001060] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
SUMMARY Molecular phylogeography has revolutionised our ability to infer past biogeographic events from cross-sectional data on current parasite populations. In ecological parasitology, this approach has been used to address fundamental questions concerning host-parasite co-evolution and geographic patterns of spread, and has raised many technical issues and problems of interpretation. For applied parasitologists, the added complexity inherent in adding population genetic structure to perceived parasite distributions can sometimes seem to cloud rather than clarify approaches to control. In this paper, we use case studies firstly to illustrate the potential extent of cryptic diversity in parasite and parasitoid populations, secondly to consider how anthropogenic influences including movement of domestic animals affect the geographic distribution and host associations of parasite genotypes, and thirdly to explore the applied relevance of these processes to parasites of socio-economic importance. The contribution of phylogeographic approaches to deeper understanding of parasite biology in these cases is assessed. Thus, molecular data on the emerging parasites Angiostrongylus vasorum in dogs and wild canids, and the myiasis-causing flies Lucilia spp. in sheep and Cochliomyia hominovorax in humans, lead to clear implications for control efforts to limit global spread. Broader applications of molecular phylogeography to understanding parasite distributions in an era of rapid global change are also discussed.
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Picard CJ, Villet MH, Wells JD. Amplified fragment length polymorphism confirms reciprocal monophyly in Chrysomya putoria and Chrysomya chloropyga: a correction of reported shared mtDNA haplotypes. MEDICAL AND VETERINARY ENTOMOLOGY 2012; 26:116-119. [PMID: 21929582 DOI: 10.1111/j.1365-2915.2011.00976.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Reinvestigation of mitochondrial haplotypes previously reported to be shared between the Afrotropical blowflies Chrysomya putoria Weidemann and Chrysomya chloropyga Weidemann (Diptera: Calliphoridae) revealed an error resulting from the misidentification of specimens. Preliminary amplified fragment length polymorphism (AFLP) analysis of the original and additional individuals again failed to find reciprocal monophyly, leading to a re-examination of the specimens for diagnostic male genitalic characters that were first described following the earlier study. Four of the original study specimens were found to have been misidentified, and definitive analysis of both mtDNA and AFLP genotypes using phylogenetic analysis and genetic assignment showed that each species was indeed reciprocally monophyletic. In addition to correcting the earlier error, this study illustrates how AFLP analysis can be used for efficient and effective specimen identification through both phylogenetic analysis and genetic assignment, and suggests that the latter method has special advantages for identification when no conspecific specimens are represented in the reference database.
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Affiliation(s)
- C J Picard
- Department of Biology, West Virginia University, Morgantown, WV, U.S.A.
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Picard CJ, Wells JD. A Test for Carrion Fly Full Siblings: A Tool for Detecting Postmortem Relocation of a Corpse*,†,‡. J Forensic Sci 2011; 57:535-8. [DOI: 10.1111/j.1556-4029.2011.01975.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Tarone AM, Picard CJ, Spiegelman C, Foran DR. Population and temperature effects on Lucilia sericata (Diptera: Calliphoridae) body size and minimum development time. JOURNAL OF MEDICAL ENTOMOLOGY 2011; 48:1062-1068. [PMID: 21936326 DOI: 10.1603/me11004] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Understanding how ecological conditions influence physiological responses is fundamental to forensic entomology. When determining the minimum postmortem interval with blow fly evidence in forensic investigations, using a reliable and accurate model of development is integral. Many published studies vary in results, source populations, and experimental designs. Accordingly, disentangling genetic causes of developmental variation from environmental causes is difficult. This study determined the minimum time of development and pupal sizes of three populations of Lucilia sericata Meigen (Diptera: Calliphoridae; from California, Michigan, and West Virginia) at two temperatures (20 degrees C and 33.5 degrees C). Development times differed significantly between strain and temperature. In addition, California pupae were the largest and fastest developing at 20 degrees C, but at 33.5 degrees C, though they still maintained their rank in size among the three populations, they were the slowest to develop. These results indicate a need to account for genetic differences in development, and genetic variation in environmental responses, when estimating a postmortem interval with entomological data.
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Affiliation(s)
- A M Tarone
- Department of Zoology, Michigan State University, Natural Science Building, East Lansing, MI 48824, USA.
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Tomberlin JK, Mohr R, Benbow ME, Tarone AM, VanLaerhoven S. A roadmap for bridging basic and applied research in forensic entomology. ANNUAL REVIEW OF ENTOMOLOGY 2011; 56:401-421. [PMID: 20822449 DOI: 10.1146/annurev-ento-051710-103143] [Citation(s) in RCA: 166] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The National Research Council issued a report in 2009 that heavily criticized the forensic sciences. The report made several recommendations that if addressed would allow the forensic sciences to develop a stronger scientific foundation. We suggest a roadmap for decomposition ecology and forensic entomology hinging on a framework built on basic research concepts in ecology, evolution, and genetics. Unifying both basic and applied research fields under a common umbrella of terminology and structure would facilitate communication in the field and the production of scientific results. It would also help to identify novel research areas leading to a better understanding of principal underpinnings governing ecosystem structure, function, and evolution while increasing the accuracy of and ability to interpret entomological evidence collected from crime scenes. By following the proposed roadmap, a bridge can be built between basic and applied decomposition ecology research, culminating in science that could withstand the rigors of emerging legal and cultural expectations.
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Affiliation(s)
- J K Tomberlin
- Department of Entomology, Texas A&M University, College Station, Texas 77843, USA.
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Villet MH, Amendt J. Advances in Entomological Methods for Death Time Estimation. FORENSIC PATHOLOGY REVIEWS 2011. [DOI: 10.1007/978-1-61779-249-6_11] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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26
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Picard CJ, Wells JD. The population genetic structure of North American Lucilia sericata (Diptera: Calliphoridae), and the utility of genetic assignment methods for reconstruction of postmortem corpse relocation. Forensic Sci Int 2010; 195:63-7. [DOI: 10.1016/j.forsciint.2009.11.012] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2009] [Revised: 10/29/2009] [Accepted: 11/13/2009] [Indexed: 11/25/2022]
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