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Taft N, Harris J, Grande TC. The comparative morphology of the musculature controlling the pectoral free rays in scorpaenoid fishes. J Morphol 2023; 284:e21597. [PMID: 37313767 DOI: 10.1002/jmor.21597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Revised: 04/28/2023] [Accepted: 05/04/2023] [Indexed: 06/15/2023]
Abstract
Free rays are ventral pectoral fin rays (lepidotrichia) that are free of the pectoral fin webbing. They are some of the most striking adaptations of benthic fishes. Free rays are used for specialized behaviors such as digging, walking or crawling along the sea bottom. Studies of pectoral free rays have focused on a small number of species, most notably the searobins (Family Triglidae). Previous research on the morphology of the free rays has emphasized their functional novelty. We hypothesize that the more extreme specializations of the pectoral free rays in searobins are not precisely novel, but are part of a broader range of morphological specializations that are associated with the pectoral free rays in suborder Scorpaenoidei. We perform a detailed comparative description of the intrinsic musculature and osteology of the pectoral free rays in three families of scorpaenoid fishes: Hoplichthyidae, Triglidae, and Synanceiidae. These families vary in the number of pectoral free rays and the degree of morphological specialization of those rays. As part of our comparative analysis, we propose significant revisions to earlier descriptions of both the identity and function of the musculature associated with the pectoral free rays. We focus particularly on the specialized adductors that are important for walking behaviors. Our emphasis on the homology of these features provides important morphological and evolutionary context for understanding the evolution and function of free rays within Scorpaenoidei and other groups.
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Affiliation(s)
- Natalia Taft
- Department of Biological Sciences, University of Wisconsin-Parkside, Kenosha, Wisconsin, USA
| | - Jeremy Harris
- Department of Biology, Loyola University Chicago, Chicago, Illinois, USA
| | - Terry C Grande
- Department of Biology, Loyola University Chicago, Chicago, Illinois, USA
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2
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Buser TJ, Kee VE, Terry RC, Summers AP, Sidlauskas BL. Taurus of the Tidepool? Inferring the Function of Cranial Weapons in Intertidal Sculpins (Pisces: Cottoidea: Oligocottinae). ICHTHYOLOGY & HERPETOLOGY 2023. [DOI: 10.1643/i2022044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Affiliation(s)
- Thaddaeus J. Buser
- Department of Fisheries, Wildlife and Conservation Sciences, Oregon State University, Corvallis, Oregon; (VEK) ; and (BLS)
. ORCID: (BLS) 0000-0003-0597-4085
| | - Victoria E. Kee
- Department of Fisheries, Wildlife and Conservation Sciences, Oregon State University, Corvallis, Oregon; (VEK) ; and (BLS)
. ORCID: (BLS) 0000-0003-0597-4085
| | - Rebecca C. Terry
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon; . ORCID: 0000-0002-9803-6292
| | - Adam P. Summers
- Department of Biology and SAFS, University of Washington, Friday Harbor Laboratories, Friday Harbor, Washington; . ORCID: 0000-0003-1930-9748
| | - Brian L. Sidlauskas
- Department of Fisheries, Wildlife and Conservation Sciences, Oregon State University, Corvallis, Oregon; (VEK) ; and (BLS)
. ORCID: (BLS) 0000-0003-0597-4085
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3
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Friedman ST, Muñoz MM. A latitudinal gradient of deep-sea invasions for marine fishes. Nat Commun 2023; 14:773. [PMID: 36774385 PMCID: PMC9922314 DOI: 10.1038/s41467-023-36501-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 02/03/2023] [Indexed: 02/13/2023] Open
Abstract
Although the tropics harbor the greatest species richness globally, recent work has demonstrated that, for many taxa, speciation rates are faster at higher latitudes. Here, we explore lability in oceanic depth as a potential mechanism for this pattern in the most biodiverse vertebrates - fishes. We demonstrate that clades with the highest speciation rates also diversify more rapidly along the depth gradient, drawing a fundamental link between evolutionary and ecological processes on a global scale. Crucially, these same clades also inhabit higher latitudes, creating a prevailing latitudinal gradient of deep-sea invasions concentrated in poleward regions. We interpret these findings in the light of classic ecological theory, unifying the latitudinal variation of oceanic features and the physiological tolerances of the species living there. This work advances the understanding of how niche lability sculpts global patterns of species distributions and underscores the vulnerability of polar ecosystems to changing environmental conditions.
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Affiliation(s)
- Sarah T Friedman
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06511, USA. .,Yale Institute for Biospheric Studies, Yale University, New Haven, CT, 06511, USA.
| | - Martha M Muñoz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06511, USA
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4
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Ito T, Morita M, Okuno S, Inaba K, Shiba K, Munehara H, Koya Y, Homma M, Awata S. Fertilization modes and the evolution of sperm characteristics in marine fishes: Paired comparisons of externally and internally fertilizing species. Ecol Evol 2022; 12:e9562. [PMID: 36479029 PMCID: PMC9720005 DOI: 10.1002/ece3.9562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Revised: 10/28/2022] [Accepted: 11/04/2022] [Indexed: 12/12/2022] Open
Abstract
Fertilization mode may affect sperm characteristics, such as morphology, velocity, and motility. However, there is little information on how fertilization mode affects sperm evolution because several factors (e.g., sperm competition) are intricately intertwined when phylogenetically distant species are compared. Here, we investigated sperm characteristics by comparing seven externally and four internally fertilizing marine fishes from three different groups containing close relatives, considering sperm competition levels. The sperm head was significantly slenderer in internal fertilizers than in external fertilizers, suggesting that a slender head is advantageous for swimming in viscous ovarian fluid or in narrow spaces of the ovary. In addition, sperm motility differed between external and internal fertilizers; sperm of external fertilizers were only motile in seawater, whereas sperm of internal fertilizers were only motile in an isotonic solution. These results suggest that sperm motility was adapted according to fertilization mode. By contrast, total sperm length and sperm velocity were not associated with fertilization mode, perhaps because of the different levels of sperm competition. Relative testis mass (an index of sperm competition level) was positively correlated with sperm velocity and negatively correlated with the ratio of sperm head length to total sperm length. These findings suggest that species with higher levels of sperm competition have faster sperm with longer flagella relative to the head length. These results contradict the previous assumption that the evolution of internal fertilization increases the total sperm length. In addition, copulatory behavior with internal insemination may involve a large genital morphology, but this is not essential in fish, suggesting the existence of various sperm transfer methods. Although the power of our analyses is not strong because of the limited number of species, we propose a new scenario of sperm evolution in which internal fertilization would increase sperm head length, but not total sperm length, and change sperm motility.
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Affiliation(s)
- Takeshi Ito
- Department of Biology, Graduate School of ScienceOsaka Metropolitan UniversityOsakaJapan,Department of Biology and Geosciences, Graduate School of ScienceOsaka City UniversityOsakaJapan
| | - Masaya Morita
- Sesoko Station, Tropical Biosphere Research CenterUniversity of the RyukyusMotobuJapan
| | - Seiya Okuno
- Department of Biology, Graduate School of ScienceOsaka Metropolitan UniversityOsakaJapan,Department of Biology and Geosciences, Graduate School of ScienceOsaka City UniversityOsakaJapan
| | - Kazuo Inaba
- Shimoda Marine Research CenterUniversity of TsukubaShimodaJapan
| | - Kogiku Shiba
- Shimoda Marine Research CenterUniversity of TsukubaShimodaJapan
| | - Hiroyuki Munehara
- Usujiri Fisheries Station, Field Science Center for Northern BiosphereHokkaido UniversityHakodateJapan
| | - Yasunori Koya
- Department of Biology, Faculty of EducationGifu UniversityGifuJapan
| | | | - Satoshi Awata
- Department of Biology, Graduate School of ScienceOsaka Metropolitan UniversityOsakaJapan,Department of Biology and Geosciences, Graduate School of ScienceOsaka City UniversityOsakaJapan
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5
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Hale ME, Galdston S, Arnold BW, Song C. The Water to Land Transition Submerged: Multifunctional Design of Pectoral Fins for Use in Swimming and in Association with Underwater Substrate. Integr Comp Biol 2022; 62:908-921. [PMID: 35652788 PMCID: PMC9617210 DOI: 10.1093/icb/icac061] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 04/26/2022] [Accepted: 05/26/2022] [Indexed: 11/14/2022] Open
Abstract
Fins of fishes provide many examples of structures that are beautifully designed to power and control movement in water; however, some species also use their fins for substrate-associated behaviors where interactions with solid surfaces are key. Here, we examine how the pectoral fins of ray-finned fish with these multifunctional behavioral demands, in water and on solid surfaces, are structured and function. We subdivide fins used in swimming and substrate contact into two general morphological categories, regionalized vs. generalized fins. Regionalized fins have ventral rays that are free from connecting membrane or in which that membrane is reduced. Dorsally they maintain a more typical membranous fin. While all pectoral fins vary somewhat in their morphology from leading to trailing edge, generalized fins do not have the substantial membrane loss between rays that is seen in regionalized fins and the distal edge anatomy changes gradually along its margin. We add a new case study in regionalized fins with the dwarf hawkfish (Cirrhitichthys falco). Hawkfishes are most often found perching and moving on structures in their environments. During perching, the free ventral rays are in contact with the substrate and splayed. We found that unlike other fish with regionalized pectoral fins, hawkfish maintain use of the dorsal membranous region of its pectoral fin for rhythmic swimming. We found that typically hawkfish bend their ventral free rays under, toward the medial hemitrichs or hold them straight during substrate-associated postures. This appears also to be the case for the ventral free rays of other species with regionalized fins. Generalized fin use for substrate contact was reviewed in round gobies (Neogobius melanostomus). In addition, although their lobe fins are not representative of ray-finned fish anatomy, we explored fin contact on submerged substrates in the Senegal bichir (Polypterus senegalus), which has a generalized distal fin (no free fin rays or distinct membrane regions). Both groups use their pectoral fins for swimming. During substrate-based postures, unlike hawkfish, their distal rays generally bend outward toward the lateral hemitrichs and a large swath of the fin membrane can contact the surface. The alternative demands on multifunctional fins suggest specialization of the mechanosensory system. We review mechanosensation related to fin movement and surface contact. These alternative regionalized and generalized strategies for serving aquatic and substrate-based functions underwater provide opportunities to further investigate specializations, including sensory structures and systems, that accompany the evolution of substrate-based behaviors in vertebrates.
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Affiliation(s)
- Melina E Hale
- Organismal Biology and Anatomy, University of Chicago, 1027 E. 57th St., Chicago, IL 60637
| | - Seth Galdston
- Organismal Biology and Anatomy, University of Chicago, 1027 E. 57th St., Chicago, IL 60637
| | - Benjamin W Arnold
- Organismal Biology and Anatomy, University of Chicago, 1027 E. 57th St., Chicago, IL 60637
| | - Chris Song
- Organismal Biology and Anatomy, University of Chicago, 1027 E. 57th St., Chicago, IL 60637
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6
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Smith WL, Ghedotti MJ, Domínguez-Domínguez O, McMahan CD, Espinoza E, Martin RP, Girard MG, Davis MP. Investigations into the ancestry of the Grape-eye Seabass (Hemilutjanus macrophthalmos) reveal novel limits and relationships for the Acropomatiformes (Teleostei: Percomorpha). NEOTROPICAL ICHTHYOLOGY 2022. [DOI: 10.1590/1982-0224-2021-0160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Abstract For 175 years, an unremarkable bass, the Grape-eye Seabass (Hemilutjanus macrophthalmos), has been known from coastal waters in the Eastern Pacific. To date, its phylogenetic placement and classification have been ignored. A preliminary osteological examination of Hemilutjanus hinted that it may have affinities with the Acropomatiformes. To test this hypothesis, we conducted a phylogenetic analysis using UCE and Sanger sequence data to study the placement of Hemilutjanus and the limits and relationships of the Acropomatiformes. We show that Hemilutjanus is a malakichthyid, and our results corroborate earlier studies that have resolved a polyphyletic Polyprionidae; accordingly, we describe Stereolepididae, new family, for Stereolepis. With these revisions, the Acropomatiformes is now composed of the: Acropomatidae; Banjosidae; Bathyclupeidae; Champsodontidae; Creediidae; Dinolestidae; Epigonidae; Glaucosomatidae; Hemerocoetidae; Howellidae; Lateolabracidae; Malakichthyidae; Ostracoberycidae; Pempheridae; Pentacerotidae; Polyprionidae; Scombropidae; Stereolepididae, new family; Symphysanodontidae; Synagropidae; and Schuettea. Finally, using our new hypothesis, we demonstrate that acropomatiforms repeatedly evolved bioluminescence and transitioned between shallow waters and the deep sea.
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Holborn MK, Einfeldt AL, Kess T, Duffy SJ, Messmer AM, Langille BL, Gauthier J, Bentzen P, Knutsen TM, Kent M, Boyce D, Bradbury IR. Reference genome of Lumpfish Cyclopterus lumpus Linnaeus provides evidence of male heterogametic sex determination through the AMH pathway. Mol Ecol Resour 2021; 22:1427-1439. [PMID: 34859595 DOI: 10.1111/1755-0998.13565] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Revised: 11/15/2021] [Accepted: 11/23/2021] [Indexed: 11/30/2022]
Abstract
Teleosts exhibit extensive diversity of sex determination (SD) systems and mechanisms, providing the opportunity to study the evolution of sex determination and sex chromosomes. Here we sequenced the genome of the Common Lumpfish (Cyclopterus lumpus Linnaeus), a species of increasing importance to aquaculture, and identified the SD region and master SD locus using a 70K SNP array and tissue-specific expression data. The chromosome-level assembly identified 25 diploid chromosomes with a total size of 572.89 Mb, a scaffold N50 of 23.86 Mb, and genome annotation predicted 21,480 protein-coding genes. Genome wide association analysis located a highly sex-associated region on chromosome 13, suggesting that anti-Müllerian hormone (AMH) is the putative SD factor. Linkage disequilibrium and heterozygosity across chromosome 13 support a proto-XX/XY system, with an absence of widespread chromosome divergence between sexes. We identified three copies of AMH in the Lumpfish primary and alternate haplotype assemblies localized in the SD region. Comparison to sequences from other teleosts suggested a monophyletic relationship and conservation within the Cottioidei. One AMH copy showed similarity to AMH/AMHY in a related species and was also the only copy with expression in testis tissue, suggesting this copy may be the functional copy of AMH in Lumpfish. The two other copies arranged in tandem inverted duplication were highly similar, suggesting a recent duplication event. This study provides a resource for the study of early sex chromosome evolution and novel genomic resources that benefits Lumpfish conservation management and aquaculture.
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Affiliation(s)
- Melissa K Holborn
- Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John's, NL, A1C 5X1, Canada
| | - Anthony L Einfeldt
- Marine Gene Probe Laboratory, Department of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| | - Tony Kess
- Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John's, NL, A1C 5X1, Canada
| | - Steve J Duffy
- Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John's, NL, A1C 5X1, Canada
| | - Amber M Messmer
- Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John's, NL, A1C 5X1, Canada
| | - Barbara L Langille
- Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John's, NL, A1C 5X1, Canada
| | - Johanne Gauthier
- Maurice Lamontagne Institute, Fisheries and Oceans Canada, Mont-Joli, QC, G5H 3Z4, Canada
| | - Paul Bentzen
- Marine Gene Probe Laboratory, Department of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| | | | - Matthew Kent
- Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway
| | - Danny Boyce
- Department of Ocean Sciences, Ocean Sciences Centre, Memorial University of Newfoundland, St John's, NL, A1C 5S7, Canada
| | - Ian R Bradbury
- Northwest Atlantic Fisheries Centre, Fisheries and Oceans Canada, St. John's, NL, A1C 5X1, Canada
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8
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Comparative osteology of the superfamily Congiopodoidea (Pisces: Scorpaenoidei). ZOOMORPHOLOGY 2021. [DOI: 10.1007/s00435-021-00537-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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9
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Tang KL, Stiassny MLJ, Mayden RL, DeSalle R. Systematics of Damselfishes. ICHTHYOLOGY & HERPETOLOGY 2021. [DOI: 10.1643/i2020105] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Kevin L. Tang
- University of Michigan–Flint, Department of Biology, 303 East Kearsley St., Flint, Michigan 48502; . Send reprint requests to this address
| | - Melanie L. J. Stiassny
- American Museum of Natural History, Department of Ichthyology, Central Park West at 79th St., New York, New York 10024;
| | - Richard L. Mayden
- Saint Louis University, Department of Biology, 3507 Laclede Ave., St. Louis, Missouri 63103;
| | - Robert DeSalle
- American Museum of Natural History, Division of Invertebrate Zoology, Central Park West at 79th St., New York, New York 10024;
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10
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Lemopoulos A, Montoya-Burgos JI. From scales to armor: Scale losses and trunk bony plate gains in ray-finned fishes. Evol Lett 2021; 5:240-250. [PMID: 34136272 PMCID: PMC8190451 DOI: 10.1002/evl3.219] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Accepted: 02/04/2021] [Indexed: 11/25/2022] Open
Abstract
Actinopterygians (ray‐finned fishes) are the most diversified group of vertebrates and are characterized by a variety of protective structures covering their integument, the evolution of which has intrigued biologists for decades. Paleontological records showed that the first mineralized vertebrate skeleton was composed of dermal bony plates covering the body, including odontogenic and skeletogenic components. Later in evolution, the exoskeleton of actinopterygian's trunk was composed of scale structures. Although scales are nowadays a widespread integument cover, some contemporary lineages do not have scales but bony plates covering their trunk, whereas other lineages are devoid of any such structures. To understand the evolution of the integument coverage and particularly the transition between different structures, we investigated the pattern of scale loss events along with actinopterygian evolution and addressed the functional relationship between the scaleless phenotype and the ecology of fishes. Furthermore, we examined whether the emergence of trunk bony plates was dependent over the presence or absence of scales. To this aim, we used two recently published actinopterygian phylogenies, one including >11,600 species, and by using stochastic mapping and Bayesian methods, we inferred scale loss events and trunk bony plate acquisitions. Our results reveal that a scaled integument is the most frequent state in actinopterygians, but multiple independent scale loss events occurred along their phylogeny with essentially no scale re‐acquisition. Based on linear mixed models, we found evidence supporting that after a scale loss event, fishes tend to change their ecology and adopt a benthic lifestyle. Furthermore, we show that trunk bony plates appeared independently multiple times along the phylogeny. By using fitted likelihood models for character evolution, we show that trunk bony plate acquisitions were dependent on a previous scale loss event. Overall, our findings support the hypothesis that integument cover is a key evolutionary trait underlying actinopterygian radiation.
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Affiliation(s)
| | - Juan I Montoya-Burgos
- Department of Genetics and Evolution University of Geneva Geneva Switzerland.,iGE3 Institute of Genetics and Genomics of Geneva Geneva Switzerland
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11
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Coulson PG. The life history characteristics of Neosebastes pandus and the relationship between sexually dimorphic growth and reproductive strategy among Scorpaeniformes. JOURNAL OF FISH BIOLOGY 2021; 98:50-63. [PMID: 32978809 DOI: 10.1111/jfb.14557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Revised: 09/18/2020] [Accepted: 09/21/2020] [Indexed: 06/11/2023]
Abstract
Scorpaeniformes are an important component of commercial and recreational fisheries world-wide. The Neosebastes species, found in the western Pacific and south-east Indian Ocean, have received little attention from a research perspective. Samples of the bighead gurnard perch, Neosebastes pandus, collected from the lower west and south coasts of Western Australia, were used to undertake the first comprehensive investigation of the biological characteristics of a Neosebastes species. Opaque zones in sectioned sagittal otoliths were validated as forming annually. Female N. pandus grow to a significantly larger size, on average, than males and dominate the largest size classes, while males, growing to a smaller size, accumulate in the intermediate size classes. Although males were far less numerous than females in those age classes in which both sexes were found, males and females attain similar maximum ages >25 years. Neosebastes pandus spawns over a brief period between May (austral late autumn) and July (austral mid-autumn) when water temperature and day length are declining. The mean monthly gonadosomatic indices (GSI, IGS ) values of females during the spawning period are 37-50 times higher than those of males, which mature at an earlier age and smaller length compared to females. Histological examination of the ovaries of females indicate that their structure is consistent with "general" teleost ovarian anatomy and thus differs from Scorpaena, Helicolenus and Sebastes species whose ovaries are adapted for specialized reproductive modes. The reproductive strategy of N. pandus of maximizing the reproductive output of females, by this sex attaining a larger size than males and pair spawning (i.e., large disparity in IGS values) demonstrates the close lineage between the Neosebastes and other Scorpaeniformes, such as the Scorpaena, Helicolenus and Sebastes.
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Affiliation(s)
- Peter G Coulson
- School of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia, Australia
- Centre for Sustainable Aquatic Ecosystems, School of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia, Australia
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12
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Campbell MA, Buser TJ, Alfaro ME, López JA. Addressing incomplete lineage sorting and paralogy in the inference of uncertain salmonid phylogenetic relationships. PeerJ 2020; 8:e9389. [PMID: 32685284 PMCID: PMC7337038 DOI: 10.7717/peerj.9389] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 05/28/2020] [Indexed: 12/14/2022] Open
Abstract
Recent and continued progress in the scale and sophistication of phylogenetic research has yielded substantial advances in knowledge of the tree of life; however, segments of that tree remain unresolved and continue to produce contradicting or unstable results. These poorly resolved relationships may be the product of methodological shortcomings or of an evolutionary history that did not generate the signal traits needed for its eventual reconstruction. Relationships within the euteleost fish family Salmonidae have proven challenging to resolve in molecular phylogenetics studies in part due to ancestral autopolyploidy contributing to conflicting gene trees. We examine a sequence capture dataset from salmonids and use alternative strategies to accommodate the effects of gene tree conflict based on aspects of salmonid genome history and the multispecies coalescent. We investigate in detail three uncertain relationships: (1) subfamily branching, (2) monophyly of Coregonus and (3) placement of Parahucho. Coregoninae and Thymallinae are resolved as sister taxa, although conflicting topologies are found across analytical strategies. We find inconsistent and generally low support for the monophyly of Coregonus, including in results of analyses with the most extensive dataset and complex model. The most consistent placement of Parahucho is as sister lineage of Salmo.
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Affiliation(s)
- Matthew A. Campbell
- University of Alaska Museum, University of Alaska—Fairbanks, Fairbanks, AK, USA
| | - Thaddaeus J. Buser
- Department of Fisheries and Wildlife, Oregon State University, Corvallis, OR, USA
| | - Michael E. Alfaro
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA
| | - J. Andrés López
- University of Alaska Museum, University of Alaska—Fairbanks, Fairbanks, AK, USA
- College of Fisheries and Ocean Sciences, University of Alaska—Fairbanks, Fairbanks, AK, USA
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13
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Girard MG, Davis MP, Smith WL. The Phylogeny of Carangiform Fishes: Morphological and Genomic Investigations of a New Fish Clade. COPEIA 2020. [DOI: 10.1643/ci-19-320] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Matthew G. Girard
- Biodiversity Institute, 1345 Jayhawk Boulevard, University of Kansas, Lawrence, Kansas 66045; (MGG) . Send reprint requests to MGG
| | - Matthew P. Davis
- Department of Biological Sciences, St. Cloud State University, St. Cloud, Minnesota 56301
| | - W. Leo Smith
- Biodiversity Institute, 1345 Jayhawk Boulevard, University of Kansas, Lawrence, Kansas 66045; (MGG) . Send reprint requests to MGG
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14
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Galloway KA, Porter ME. Mechanical properties of the venomous spines of Pterois volitans and morphology among lionfish species. J Exp Biol 2019; 222:jeb.197905. [DOI: 10.1242/jeb.197905] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Accepted: 02/22/2019] [Indexed: 11/20/2022]
Abstract
The red lionfish, Pterois volitans, an invasive species, has 18 venomous spines: 13 dorsal, 3 anal, and one on each pelvic fin. Fish spines can have several purposes such as defense, intimidation, and for anchoring into crevices. Instead of having hollow spines, lionfish have a tri-lobed cross-sectional shape with grooves that deliver the venom, tapering towards the tip. We aim to quantify the impacts of shape (Second moment of area) and tapering on the mechanical properties of the spine. We performed two-point bending at several positions along the spines of P. volitans to determine mechanical properties (Young's modulus, Elastic energy storage, and Flexural stiffness). The short and recurved anal and pelvic spines are stiffer and resist bending more effectively than the long, dorsal spines. In addition, mechanical properties differ along the length of the spines, most likely because they are tapered. We hypothesize that the highly bendable dorsal spines are used for intimidation, making the fish look larger. The stiffer and energy absorbing anal and pelvic spines are smaller and less numerous, but they may be used for protection since they are located near important internal structures such as the swim bladder. Lastly, spine second moment of area varies across the Pterois genus. These data suggest there may be morphological and mechanical trade-offs among defense, protection, and intimidation of lionfish spines. Overall, the red lionfish venomous spine shape and mechanics may offer protection and intimidate potential predators, significantly contributing to their invasion success.
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15
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Ma KY, Craig MT. An Inconvenient Monophyly: An Update on the Taxonomy of the Groupers (Epinephelidae). COPEIA 2018. [DOI: 10.1643/ci-18-055] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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16
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Smith WL, Buck CA, Ornay GS, Davis MP, Martin RP, Gibson SZ, Girard MG. Improving Vertebrate Skeleton Images: Fluorescence and the Non-Permanent Mounting of Cleared-and-Stained Specimens. COPEIA 2018. [DOI: 10.1643/cg-18-047] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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