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Geleta RJ, Roro AG, Terfa MT. Phenotypic and yield responses of common bean (Phaseolus vulgaris l.) varieties to different soil moisture levels. BMC PLANT BIOLOGY 2024; 24:242. [PMID: 38575870 PMCID: PMC10993436 DOI: 10.1186/s12870-024-04856-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 02/22/2024] [Indexed: 04/06/2024]
Abstract
BACKGROUND Morphological plasticity is one of the capacities of plants to modify their morphological appearance in response to external stimuli. A plant's morphology and physiology are constantly tuned to its variable surroundings by complex interactions between environmental stimuli and internal signals. In most of plant species,, such phenotypic and physiological expression varies among different varieties based on their levels of particular environmental stress conditions. However, the morphological and yield responses of common bean varieties to different environmental conditions are not well known. The purpose of the study was to evaluate morphological and yield response of common bean to soil moisture stress and to investigate the morphological mechanism by which common bean varieties tolerate fluctuations in moisture stress. METHODS A pot experiment was carried out to investigate the effects of different moisture levels on the phenotypic and yield responses of common bean varieties. A factorial combination of five common bean varieties (Hirna, kufanzik, Awash-1, Ado, and Chercher) and three moisture levels (control, waterlogging stress, and moisture deficit stress) was used in three replications. Moisture stress treatments were started 20 days after planting, at the trifoliate growth stage. To evaluate the response of each variety, morphological and yield data were collected at week intervals. MAIN RESULTS The results indicated that moisture levels and varieties had a significant influence on all growth parameters. Crop phenology was significantly influenced by the interaction effect of moisture level and variety. Exposing Hirna variety to moisture stress led to extended flowering and pod setting by 23 and 24 days, respectively, compared to the other treatments. The results showed that the phenotypic responses to moisture deficit and waterlogging stress varied between varieties. Waterlogging stress had a stronger reduction effect on the fresh weight, dry weight and leaf area of common bean varieties than moisture deficit and the control. Pods per plant, seeds per plant, grain yield per plant, and harvest index were significantly influenced by the varieties, moisture stress levels and their interaction. Except for Chercher and Hirna. However, varieties Ado, kufanzik and Awasha-1 did not show significant differences on the time of flower initiation due to moisture level. Biomass and growth in leaf fresh weight, leaf dry weight, leaf area, leaf number and plant height were significantly influenced by moisture level. When moisture deficit and waterlogging stress occurred, Ado and Awash-1 were more responsive to moisture stress than Hirna, Chercher, and Kufanzik. CONCLUSION Hence, Hirna and Kufanzik varieties were found to be tolerant because they produced higher yields than the Chercher, Awash-1, and Ado varieties.
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Affiliation(s)
| | - Amsalu Gobena Roro
- School of Plant and Horticultural Sciences, Hawassa University, P.O. Box 05, Hawassa, Ethiopia.
| | - Meseret Tesema Terfa
- School of Plant and Horticultural Sciences, Hawassa University, P.O. Box 05, Hawassa, Ethiopia
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Ullah N, Qian F, Geng R, Xue Y, Guan W, Ji G, Li H, Huang Q, Cai G, Yan G, Wu X. Root system architecture change in response to waterlogging stress in a 448 global collection of rapeseeds (Brassica napus L.). PLANTA 2024; 259:95. [PMID: 38512412 DOI: 10.1007/s00425-024-04369-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 02/22/2024] [Indexed: 03/23/2024]
Abstract
MAIN CONCLUSIONS A novel image-based screening method for precisely identifying genotypic variations in rapeseed RSA under waterlogging stress was developed. Five key root traits were confirmed as good indicators of waterlogging and might be employed in breeding, particularly when using the MFVW approach. Waterlogging is a vital environmental factor that has detrimental effects on the growth and development of rapeseed (Brassica napus L.). Plant roots suffer from hypoxia under waterlogging, which ultimately confers yield penalty. Therefore, it is crucially important to understand the genetic variation of root system architecture (RSA) in response to waterlogging stress to guide the selection of new tolerant cultivars with favorable roots. This research was conducted to investigate RSA traits using image-based screening techniques to better understand how RSA changes over time during waterlogging at the seedling stage. First, we performed a t-test by comparing the relative root trait value between four tolerant and four sensitive accessions. The most important root characteristics associated with waterlogging tolerance at 12 h are total root length (TRL), total root surface area (TRSA), total root volume (TRV), total number of tips (TNT), and total number of forks (TNF). The root structures of 448 rapeseed accessions with or without waterlogging showed notable genetic diversity, and all traits were generally restrained under waterlogging conditions, except for the total root average diameter. Additionally, according to the evaluation and integration analysis of 448 accessions, we identified that five traits, TRL, TRSA, TRV, TNT, and TNF, were the most reliable traits for screening waterlogging-tolerant accessions. Using analysis of the membership function value (MFVW) and D-value of the five selected traits, 25 extremely waterlogging-tolerant materials were screened out. Waterlogging significantly reduced RSA, inhibiting root growth compared to the control. Additionally, waterlogging increased lipid peroxidation, accompanied by a decrease in the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). This study effectively improves our understanding of the response of RSA to waterlogging. The image-based screening method developed in this study provides a new scientific guidance for quickly examining the basic RSA changes and precisely predicting waterlogging-tolerant rapeseed germplasms, thus expanding the genetic diversity of waterlogging-tolerant rapeseed germplasm available for breeding.
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Affiliation(s)
- Naseeb Ullah
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Fang Qian
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Rudan Geng
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Yujun Xue
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Wenjie Guan
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Gaoxiang Ji
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Hao Li
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Qian Huang
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Guangqin Cai
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Guixin Yan
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China.
| | - Xiaoming Wu
- The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, 430062, China.
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He M, Geng G, Mei S, Wang G, Yu L, Xu Y, Wang Y. Melatonin modulates the tolerance of plants to water stress: morphological response of the molecular mechanism. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP23199. [PMID: 38354692 DOI: 10.1071/fp23199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 01/24/2024] [Indexed: 02/16/2024]
Abstract
Water stress (drought and waterlogging) leads to an imbalance in plant water distribution, disrupts cell homeostasis, and severely inhibits plant growth. Melatonin is a growth hormone that plants synthesise and has been shown to resist adversity in many plants. This review discusses the biosynthesis and metabolism of melatonin, as well as the changes in plant morphology and physiological mechanisms caused by the molecular defence process. Melatonin induces the expression of related genes in the process of plant photosynthesis under stress and protects the structural integrity of chloroplasts. Exogenous melatonin can maintain the dynamic balance of root ion exchange under waterlogging stress. Melatonin can repair mitochondria and alleviate damage caused by reactive oxygen species and reactive nitrogen species; and has a wide range of uses in the regulation of stress-specific genes and the activation of antioxidant enzyme genes. Melatonin improves the stability of membrane lipids in plant cells and maintains osmotic balance by regulating water channels. There is crosstalk between melatonin and other hormones, which jointly improve the ability of the root system to absorb water and breathe and promote plant growth. Briefly, as a multifunctional molecule, melatonin improves the tolerance of plants under water stress and promotes plant growth and development.
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Affiliation(s)
- Minmin He
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Gui Geng
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Shuyang Mei
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Gang Wang
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Lihua Yu
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Yao Xu
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Yuguang Wang
- National Sugar Crop Improvement Centre, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China; and Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & College of Life Sciences, Heilongjiang University, Harbin, Heilongjiang 150500, China; and Heilongjiang Sugar Beet Engineering Technology Research Center, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
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Tian H, Fan G, Xiong X, Wang H, Zhang S, Geng G. Characterization and transformation of the CabHLH18 gene from hot pepper to enhance waterlogging tolerance. FRONTIERS IN PLANT SCIENCE 2024; 14:1285198. [PMID: 38283978 PMCID: PMC10810986 DOI: 10.3389/fpls.2023.1285198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 12/18/2023] [Indexed: 01/30/2024]
Abstract
Basic helix-loop-helix (bHLH) proteins are important in abiotic stress control. Here, a specific bHLH transcription factor gene, CabHLH18, from a strong waterlogging-tolerant pepper cultivar, 'ZHC2', was successfully cloned. The CabHLH18 gene presented a coding sequence length of 1,056 bp, encoding 352 amino acids, and the protein was the closest to Capsicum annuum XM016694561.2 protein. The CabHLH18 protein was located in the nucleus. The transformation of the CabHLH18 overexpression vector into the plumules of hot peppers, 'DFZJ' and 'ZHC1', exhibited 21.37% and 22.20% efficiency, respectively. The root length, plant height, and fresh weight of the 'DFZJ' overexpression lines were greater than those of wild-type (WT) plants under waterlogging conditions. Compared with the WT plants, the overexpression lines generally showed greater contents of water, the amino acid, proline, soluble sugar, root viability, and superoxide dismutase activity, but lower malondialdehyde content under waterlogging conditions. Plant fresh weight, amino acids, proline, and soluble sugar levels of the overexpression lines were 39.17%, 45.03%, 60.67%, and 120.18% greater, respectively, compared with the WT plants at 24 h after waterlogging stress. Therefore, the CabHLH18 gene could be implicated in conferring waterlogging tolerance in hot peppers and holds promise for enhancing their overall waterlogging tolerance.
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Affiliation(s)
- Huaizhi Tian
- College of Agriculture, Guizhou University, Guiyang, Guizhou, China
- Institute of Pepper, Zunyi Academy of Agricultural Sciences, Zunyi, Guizhou, China
| | - Gaoling Fan
- Institute of Pepper, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China
| | - Xingwei Xiong
- College of Agriculture, Guizhou University, Guiyang, Guizhou, China
| | - Hui Wang
- College of Agriculture, Guizhou University, Guiyang, Guizhou, China
| | - Suqin Zhang
- College of Agriculture, Guizhou University, Guiyang, Guizhou, China
| | - Guangdong Geng
- College of Agriculture, Guizhou University, Guiyang, Guizhou, China
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Phukan UJ, Jindal S, Laldinsangi C, Singh PK, Longchar B. A microscopic scenario on recovery mechanisms under waterlogging and submergence stress in rice. PLANTA 2023; 259:9. [PMID: 38030751 DOI: 10.1007/s00425-023-04285-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Accepted: 11/08/2023] [Indexed: 12/01/2023]
Abstract
MAIN CONCLUSION Adaptive traits in rice responding to flooding, a compound stress, are associated with morpho-anatomical and physiological changes which are regulated at the genetic level. Therefore, understanding submergence stress tolerance in rice will help development of adapted cultivars that can help mitigate agricultural losses. Rice is an important dietary component of daily human consumption and is cultivated as a staple crop worldwide. Flooding is a compound stress which imposes significant financial losses to farmers. Flood-affected rainfed rice ecosystems led to the development of various adaptive traits in different cultivars for their optimal growth and survival. Some cultivars can tolerate hypoxia by temporarily arresting elongation and conserving their energy sources, which they utilize to regrow after the stress conditions subside. However, few other cultivars rapidly elongate to escape hypoxia using carbohydrate resources. These contrasting characters are regulated at the genetic level through different quantitative trait loci that contain ERF transcription factors (TFs), Submergence and Snorkels. TFs can simultaneously activate the transcription of various genes involved in stress and development responses. These TFs are of prime importance because the introgressed and near-isogenic lines showed promising results with increased submergence tolerance without affecting yield or quality. However, the entire landscape of submergence tolerance is not entirely depicted, and further exploration in the field is necessary to understand the mechanism in rice completely. Therefore, this review will highlight the significant adaptive traits observed in flooded rice varieties and how they are regulated mechanistically.
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Affiliation(s)
- Ujjal J Phukan
- School of Plant Sciences, University of Arizona, Tucson, AZ, 85721-0036, USA
| | - Sunita Jindal
- Institute of Plant Molecular Biology, Biology Centre, Czech Academy of Sciences, 37005, České Budějovice, Czech Republic
| | - C Laldinsangi
- Department of Life Sciences, Pachhunga University College, Mizoram University, Aizawl, 796001, Mizoram, India
| | - Prashant Kumar Singh
- Department of Biotechnology, Pachhunga University College, Mizoram University, Aizawl, 796001, Mizoram, India
- Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, 68 HaMacabim Road, 7505101, Rishon Lezion, Israel
| | - Bendangchuchang Longchar
- Department of Life Sciences, Pachhunga University College, Mizoram University, Aizawl, 796001, Mizoram, India.
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Fu F, Song C, Wen C, Yang L, Guo Y, Yang X, Shu Z, Li X, Feng Y, Liu B, Sun M, Zhong Y, Chen L, Niu Y, Chen J, Wang G, Yin T, Chen S, Xue L, Cao F. The Metasequoia genome and evolutionary relationships among redwoods. PLANT COMMUNICATIONS 2023; 4:100643. [PMID: 37381601 PMCID: PMC10775903 DOI: 10.1016/j.xplc.2023.100643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 06/11/2023] [Accepted: 06/25/2023] [Indexed: 06/30/2023]
Abstract
Redwood trees (Sequoioideae), including Metasequoia glyptostroboides (dawn redwood), Sequoiadendron giganteum (giant sequoia), and Sequoia sempervirens (coast redwood), are threatened and widely recognized iconic tree species. Genomic resources for redwood trees could provide clues to their evolutionary relationships. Here, we report the 8-Gb reference genome of M. glyptostroboides and a comparative analysis with two related species. More than 62% of the M. glyptostroboides genome is composed of repetitive sequences. Clade-specific bursts of long terminal repeat retrotransposons may have contributed to genomic differentiation in the three species. The chromosomal synteny between M. glyptostroboides and S. giganteum is extremely high, whereas there has been significant chromosome reorganization in S. sempervirens. Phylogenetic analysis of marker genes indicates that S. sempervirens is an autopolyploid, and more than 48% of the gene trees are incongruent with the species tree. Results of multiple analyses suggest that incomplete lineage sorting (ILS) rather than hybridization explains the inconsistent phylogeny, indicating that genetic variation among redwoods may be due to random retention of polymorphisms in ancestral populations. Functional analysis of ortholog groups indicates that gene families of ion channels, tannin biosynthesis enzymes, and transcription factors for meristem maintenance have expanded in S. giganteum and S. sempervirens, which is consistent with their extreme height. As a wetland-tolerant species, M. glyptostroboides shows a transcriptional response to flooding stress that is conserved with that of analyzed angiosperm species. Our study offers insights into redwood evolution and adaptation and provides genomic resources to aid in their conservation and management.
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Affiliation(s)
- Fangfang Fu
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Chi Song
- Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China; Wuhan Benagen Technology Company Limited, Wuhan 430000, China
| | - Chengjin Wen
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Lulu Yang
- Wuhan Benagen Technology Company Limited, Wuhan 430000, China
| | - Ying Guo
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Xiaoming Yang
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Ziqiang Shu
- Wuhan Benagen Technology Company Limited, Wuhan 430000, China
| | - Xiaodong Li
- Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Yangfan Feng
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Bingshuang Liu
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Mingsheng Sun
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Yinxiao Zhong
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Li Chen
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Yan Niu
- Wuhan Benagen Technology Company Limited, Wuhan 430000, China
| | - Jie Chen
- Wuhan Benagen Technology Company Limited, Wuhan 430000, China
| | - Guibin Wang
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Tongming Yin
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China.
| | - Shilin Chen
- China Academy of Chinese Medical Sciences, Institute of Chinese Materia Medica, Beijing 100070, China.
| | - Liangjiao Xue
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China.
| | - Fuliang Cao
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China.
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Aslam A, Mahmood A, Ur-Rehman H, Li C, Liang X, Shao J, Negm S, Moustafa M, Aamer M, Hassan MU. Plant Adaptation to Flooding Stress under Changing Climate Conditions: Ongoing Breakthroughs and Future Challenges. PLANTS (BASEL, SWITZERLAND) 2023; 12:3824. [PMID: 38005721 PMCID: PMC10675391 DOI: 10.3390/plants12223824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 10/24/2023] [Accepted: 11/02/2023] [Indexed: 11/26/2023]
Abstract
Climate-change-induced variations in temperature and rainfall patterns are a serious threat across the globe. Flooding is the foremost challenge to agricultural productivity, and it is believed to become more intense under a changing climate. Flooding is a serious form of stress that significantly reduces crop yields, and future climatic anomalies are predicted to make the problem even worse in many areas of the world. To cope with the prevailing flooding stress, plants have developed different morphological and anatomical adaptations in their roots, aerenchyma cells, and leaves. Therefore, researchers are paying more attention to identifying developed and adopted molecular-based plant mechanisms with the objective of obtaining flooding-resistant cultivars. In this review, we discuss the various physiological, anatomical, and morphological adaptations (aerenchyma cells, ROL barriers (redial O2 loss), and adventitious roots) and the phytohormonal regulation in plants under flooding stress. This review comprises ongoing innovations and strategies to mitigate flooding stress, and it also provides new insights into how this knowledge can be used to improve productivity in the scenario of a rapidly changing climate and increasing flood intensity.
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Affiliation(s)
- Amna Aslam
- Department of Botany, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; (A.A.); (H.U.-R.)
| | - Athar Mahmood
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan;
| | - Hafeez Ur-Rehman
- Department of Botany, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; (A.A.); (H.U.-R.)
| | - Cunwu Li
- Guangxi Key Laboratory of Water Engineering Materials and Structures, Guangxi Institute of Water Resources Research, Nanning 530023, China; (C.L.); (J.S.)
| | - Xuewen Liang
- Guangxi Key Laboratory of Water Engineering Materials and Structures, Guangxi Institute of Water Resources Research, Nanning 530023, China; (C.L.); (J.S.)
| | - Jinhua Shao
- Guangxi Key Laboratory of Water Engineering Materials and Structures, Guangxi Institute of Water Resources Research, Nanning 530023, China; (C.L.); (J.S.)
| | - Sally Negm
- Department of Life Sciences, College of Science and Art Mahyel Aseer, King Khalid University, Abha 62529, Saudi Arabia;
| | - Mahmoud Moustafa
- Department of Biology, College of Science, King Khalid University, Abha 61421, Saudi Arabia;
| | - Muhammad Aamer
- Research Center on Ecological Sciences, Jiangxi Agricultural University, Nanchang 330045, China; (M.A.); (M.U.H.)
| | - Muhammad Umair Hassan
- Research Center on Ecological Sciences, Jiangxi Agricultural University, Nanchang 330045, China; (M.A.); (M.U.H.)
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Wu J, Wang J, Wang P, Su C, Hui W, Gong W. Ethylene-induced improvement in photosynthetic performance of Zanthoxylum armatum under reoxygenation conditions. FUNCTIONAL PLANT BIOLOGY : FPB 2023; 50:712-723. [PMID: 37491008 DOI: 10.1071/fp23079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 07/01/2023] [Indexed: 07/27/2023]
Abstract
In this study, we evaluated the photosynthetic performance of Zanthoxylum armatum seedlings to test the tolerance to reoxygenation after waterlogging. The experiment included a control group without waterlogging (NW) and three reoxygenation groups with reoxygenation after 1day (WR1), 2days (WR2) and 3days (WR3). Seedlings were pretreated with concentrations of 0, 200 and 400μmolL-1 of ethylene. The results showed that reoxygenation after waterlogging for 1-3days decreased photosynthetic pigments content, enzymes activity, stomatal conductance (G s ), net photosynthetic rate (P n ), transpiration rate (T r ) and water-use efficiency (WUE). However, pretreatment with ethylene increased photosynthetic pigments content, enzymes activity and gas exchange parameters under both NW and WR3 treatments. The chlorophyll fluorescence results showed that the maximum quantum yield of PSII (F v /F m ) and actual photochemical efficiency of PSII (Φ PSII ) remained no significant changes under the NW and WR1 treatments, while they were significantly reduced with an increase in waterlogging days followed by reoxygenation under WR2 and WR3 treatments. Exogenous ethylene inhibited F v /F m and the non-photochemical quenching coefficient (NPQ), while enhanced Φ PSII and electron transfer efficiency (ETR) under WR2 treatments. Moreover, the accumulation of exogenous ethylene reduced photosynthetic ability. These findings provide insights into the role of ethylene in enhancing the tolerance of Z. armatum to reoxygenation stress, which could help mitigate the impact of continued climate change.
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Affiliation(s)
- Jiaojiao Wu
- Key Laboratory of Ecological Forestry Engineering of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Jingyan Wang
- Key Laboratory of Ecological Forestry Engineering of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Peiyun Wang
- Key Laboratory of Ecological Forestry Engineering of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Chengyi Su
- Key Laboratory of Ecological Forestry Engineering of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Wenkai Hui
- Key Laboratory of Ecological Forestry Engineering of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu 611130, China
| | - Wei Gong
- Key Laboratory of Ecological Forestry Engineering of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu 611130, China
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Chi HY, Ou SL, Wang MC, Yang CY. Physiological responses and Ethylene-Response AP2/ERF Factor expression in Indica rice seedlings subjected to submergence and osmotic stress. BMC PLANT BIOLOGY 2023; 23:372. [PMID: 37501108 PMCID: PMC10373351 DOI: 10.1186/s12870-023-04380-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 07/12/2023] [Indexed: 07/29/2023]
Abstract
BACKGROUND The increased frequency of heavy rains in recent years has led to submergence stress in rice paddies, severely affecting rice production. Submergence causes not only hypoxic stress from excess water in the surrounding environment but also osmotic stress in plant cells. We assessed physiological responses and Ethylene-Response AP2/ERF Factor regulation under submergence conditions alone and with ionic or nonionic osmotic stress in submergence-sensitive IR64 and submergence-tolerant IR64-Sub1 Indica rice cultivars. RESULTS Our results indicate that both IR64 and IR64-Sub1 exhibited shorter plant heights and root lengths under submergence with nonionic osmotic stress than normal condition and submergence alone. IR64-Sub1 seedlings exhibited a significantly lower plant height under submergence conditions alone and with ionic or nonionic osmotic stress than IR64 cultivars. IR64-Sub1 seedlings also presented lower malondialdehyde (MDA) concentration and higher survival rates than did IR64 seedlings after submergence with ionic or nonionic osmotic stress treatment. Sub1A-1 affects reactive oxygen species (ROS) accumulation and antioxidant enzyme activity in rice. The results also show that hypoxia-inducible ethylene response factors (ERF)-VII group and alcohol dehydrogenase 1 (ADH1) and lactate dehydrogenase 1 (LDH1) genes exhibited different expression levels under nonionic or ionic osmotic stress during submergence on rice. CONCLUSIONS Together, these results demonstrate that complex regulatory mechanisms are involved in responses to the aforementioned forms of stress and offer new insights into the effects of submergence and osmotic stress on rice.
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Affiliation(s)
- Hsin-Yu Chi
- International Master Program of Agriculture, National Chung Hsing University, Taichung, 402, Taiwan
| | - Shang-Ling Ou
- Department of Agronomy, National Chung Hsing University, Taichung, 402, Taiwan
| | - Mao-Chang Wang
- Department of Accounting, Chinese Culture University, Taipei, 111, Taiwan
| | - Chin-Ying Yang
- Department of Agronomy, National Chung Hsing University, Taichung, 402, Taiwan.
- Smart Sustainable New Agriculture Research Center (SMARTer), National Chung Hsing University, Taichung, 402, Taiwan.
- Innovation and Development Center of Sustainable Agriculture (IDCSA), National Chung Hsing University, Taichung, 402, Taiwan.
- Advanced Plant and Food Biotechnology Center, National Chung Hsing University, Taichung, 402, Taiwan.
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Zhang XM, Duan SG, Xia Y, Li JT, Liu LX, Tang M, Tang J, Sun W, Yi Y. Transcriptomic, Physiological, and Metabolomic Response of an Alpine Plant, Rhododendron delavayi, to Waterlogging Stress and Post-Waterlogging Recovery. Int J Mol Sci 2023; 24:10509. [PMID: 37445685 DOI: 10.3390/ijms241310509] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 06/17/2023] [Accepted: 06/20/2023] [Indexed: 07/15/2023] Open
Abstract
Climate change has resulted in frequent heavy and prolonged rainfall events that exacerbate waterlogging stress, leading to the death of certain alpine Rhododendron trees. To shed light on the physiological and molecular mechanisms behind waterlogging stress in woody Rhododendron trees, we conducted a study of Rhododendron delavayi, a well-known alpine flower species. Specifically, we investigated the physiological and molecular changes that occurred in leaves of R. delavayi subjected to 30 days of waterlogging stress (WS30d), as well as subsequent post-waterlogging recovery period of 10 days (WS30d-R10d). Our findings reveal that waterlogging stress causes a significant reduction in CO2 assimilation rate, stomatal conductance, transpiration rate, and maximum photochemical efficiency of PSII (Fv/Fm) in the WS30d leaves, by 91.2%, 95.3%, 93.3%, and 8.4%, respectively, when compared to the control leaves. Furthermore, the chlorophyll a and total chlorophyll content in the WS30d leaves decreased by 13.5% and 16.6%, respectively. Both WS30d and WS30d-R10d leaves exhibited excessive H2O2 accumulation, with a corresponding decrease in lignin content in the WS30d-R10d leaves. At the molecular level, purine metabolism, glutathione metabolism, photosynthesis, and photosynthesis-antenna protein pathways were found to be primarily involved in WS30d leaves, whereas phenylpropanoid biosynthesis, fatty acid metabolism, fatty acid biosynthesis, fatty acid elongation, and cutin, suberin, and wax biosynthesis pathways were significantly enriched in WS30d-R10d leaves. Additionally, both WS30d and WS30d-R10d leaves displayed a build-up of sugars. Overall, our integrated transcriptomic, physiological, and metabolomic analysis demonstrated that R. delavayi is susceptible to waterlogging stress, which causes irreversible detrimental effects on both its physiological and molecular aspects, hence compromising the tree's ability to fully recover, even under normal growth conditions.
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Affiliation(s)
- Xi-Min Zhang
- Key Laboratory of Plant Physiology and Development Regulation, Guizhou Normal University, Guiyang 550025, China
- Key Laboratory of Environment Friendly Management on Alpine Rhododendron Diseases and Pests of Institutions of Higher Learning in Guizhou Province, Guizhou Normal University, Guiyang 550025, China
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
| | - Sheng-Guang Duan
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
| | - Ying Xia
- Key Laboratory of Plant Physiology and Development Regulation, Guizhou Normal University, Guiyang 550025, China
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
| | - Jie-Ting Li
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
- Key Laboratory of State Forestry Administration on Biodiversity Conservation in Karst Area of Southwest, Guizhou Normal University, Guiyang 550025, China
| | - Lun-Xian Liu
- Key Laboratory of Plant Physiology and Development Regulation, Guizhou Normal University, Guiyang 550025, China
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
| | - Ming Tang
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
- Key Laboratory of State Forestry Administration on Biodiversity Conservation in Karst Area of Southwest, Guizhou Normal University, Guiyang 550025, China
| | - Jing Tang
- Key Laboratory of Plant Physiology and Development Regulation, Guizhou Normal University, Guiyang 550025, China
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
| | - Wei Sun
- Key Laboratory of Plant Physiology and Development Regulation, Guizhou Normal University, Guiyang 550025, China
- School of Life Sciences, Guizhou Normal University, Guiyang 550025, China
| | - Yin Yi
- Key Laboratory of Plant Physiology and Development Regulation, Guizhou Normal University, Guiyang 550025, China
- Key Laboratory of State Forestry Administration on Biodiversity Conservation in Karst Area of Southwest, Guizhou Normal University, Guiyang 550025, China
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Sun L, Wang J, Cui Y, Cui R, Kang R, Zhang Y, Wang S, Zhao L, Wang D, Lu X, Fan Y, Han M, Chen C, Chen X, Guo L, Ye W. Changes in terpene biosynthesis and submergence tolerance in cotton. BMC PLANT BIOLOGY 2023; 23:330. [PMID: 37344795 DOI: 10.1186/s12870-023-04334-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Accepted: 06/06/2023] [Indexed: 06/23/2023]
Abstract
BACKGROUND Flooding is among the most severe abiotic stresses in plant growth and development. The mechanism of submergence tolerance of cotton in response to submergence stress is unknown. RESULTS The transcriptome results showed that a total of 6,893 differentially expressed genes (DEGs) were discovered under submergence stress. Gene Ontology (GO) enrichment analysis showed that DEGs were involved in various stress or stimulus responses. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that DEGs related to plant hormone signal transduction, starch and sucrose metabolism, glycolysis and the biosynthesis of secondary metabolites were regulated by submergence stress. Eight DEGs related to ethylene signaling and 3 ethylene synthesis genes were identified in the hormone signal transduction. For respiratory metabolism, alcohol dehydrogenase (ADH, GH_A02G0728) and pyruvate decarboxylase (PDC, GH_D09G1778) were significantly upregulated but 6-phosphofructokinase (PFK, GH_D05G0280), phosphoglycerate kinase (PGK, GH_A01G0945 and GH_D01G0967) and sucrose synthase genes (SUS, GH_A06G0873 and GH_D06G0851) were significantly downregulated in the submergence treatment. Terpene biosynthetic pathway-related genes in the secondary metabolites were regulated in submergence stress. CONCLUSIONS Regulation of terpene biosynthesis by respiratory metabolism may play a role in enhancing the tolerance of cotton to submergence under flooding. Our findings showed that the mevalonate pathway, which occurs in the cytoplasm of the terpenoid backbone biosynthesis pathway (ko00900), may be the main response to submergence stress.
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Affiliation(s)
- Liangqing Sun
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
- Cotton Research Institute of Jiangxi Province, Jiujiang, 332105, Jiangxi, China
| | - Junjuan Wang
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Yupeng Cui
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Ruifeng Cui
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Ruiqing Kang
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Yuexin Zhang
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Shuai Wang
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Lanjie Zhao
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Delong Wang
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Xuke Lu
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Yapeng Fan
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Mingge Han
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Chao Chen
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Xiugui Chen
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Lixue Guo
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China
| | - Wuwei Ye
- Institute of Cotton Research of Chinese Academy of Agricultural Sciences/Research Base, Anyang Institute of Technology, State Key Laboratory of Cotton Biology, Anyang, 455000, Henan, China.
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Zheng Q, Li G, Wang H, Zhou Z. The relationship between ethylene-induced autophagy and reactive oxygen species in Arabidopsis root cells during the early stages of waterlogging stress. PeerJ 2023; 11:e15404. [PMID: 37255589 PMCID: PMC10226478 DOI: 10.7717/peerj.15404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 04/20/2023] [Indexed: 06/01/2023] Open
Abstract
The response of plants to waterlogging stress is a complex process, with ethylene playing a crucial role as a signaling molecule. However, it remains unclear how ethylene is initially triggered in response to waterlogging stress when plants are continuously waterlogged for less than 12 hours. Here, we have shown that ethylene-induced autophagy leads to the degradation of damaged mitochondria (the main organelles producing reactive oxygen species (ROS)) to reduce ROS production during oxidative stress in Arabidopsis thaliana, which improves the survival rate of root cells in the early stages of waterlogging stress. Waterlogging stress activated ethylene-related genes, including ACO2, ACS2, ERF72, ERF73, and EIN3, and ethylene content of plants increased significantly within 24 h of continuous waterlogging. As stress duration increased, increased amounts of ROS accumulated in Arabidopsis thaliana roots, and the activity of antioxidant enzymes initially increased and then decreased. Concurrently, the level of ethylene-induced autophagy, which participates in antioxidant defense, is higher in wild-type plants than in the octuple acs mutant cs16651 (acs2-1/acs4-1/acs5-2/acs6-1/acs7-1/acs9-1/amiRacs8acs11). Exogenous application of 1-aminocyclopropanecarboxylic acid (ACC), resulted in a more pronounced manifestation of autophagy in the stele of Arabidopsis roots. Compared with the waterlogging treatment group or the ACC treatment group, the waterlogging + ACC treatment can induce autophagy to occur earlier and expand the autophagic range to the epidermis of Arabidopsis thaliana roots. Overall, our results provide insight into the important role of ethylene-induced autophagy in enhancing the antioxidative capacity of Arabidopsis thaliana during the early stages of waterlogging stress. Furthermore, we suggest ethylene as a potential candidate for mitigating the deleterious effects caused by waterlogging in Arabidopsis thaliana.
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Li Y, Huang J, Yu C, Mo R, Zhu Z, Dong Z, Hu X, Zhuang C, Deng W. Physiological and Transcriptome Analyses of Photosynthesis in Three Mulberry Cultivars within Two Propagation Methods (Cutting and Grafting) under Waterlogging Stress. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112066. [PMID: 37299045 DOI: 10.3390/plants12112066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 05/10/2023] [Accepted: 05/19/2023] [Indexed: 06/12/2023]
Abstract
Mulberry is a valuable woody plant with significant economic importance. It can be propagated through two main methods: cutting and grafting. Waterlogging can have a major impact on mulberry growth and can significantly reduce production. In this study, we examined gene expression patterns and photosynthetic responses in three waterlogged mulberry cultivars propagated through cutting and grafting. Compared to the control group, waterlogging treatments reduced levels of chlorophyll, soluble protein, soluble sugars, proline, and malondialdehyde (MDA). Additionally, the treatments significantly decreased the activities of ascorbate peroxidase (APX), peroxidase (POD), and catalase (CAT) in all three cultivars, except for superoxide dismutase (SOD). Waterlogging treatments also affected the rate of photosynthesis (Pn), stomatal conductance (Gs), and transpiration rate (Tr) in all three cultivars. However, no significant difference in physiological response was observed between the cutting and grafting groups. Gene expression patterns in the mulberry changed dramatically after waterlogging stress and varied between the two propagation methods. A total of 10,394 genes showed significant changes in expression levels, with the number of differentially expressed genes (DEGs) varying between comparison groups. GO and KEGG analysis revealed important DEGs, including photosynthesis-related genes that were significantly downregulated after waterlogging treatment. Notably, these genes were upregulated at day 10 in the cutting group compared to the grafting group. In particular, genes involved in carbon fixation were significantly upregulated in the cutting group. Finally, cutting propagation methods displayed better recovery capacity from waterlogging stress than grafting. This study provides valuable information for improving mulberry genetics in breeding programs.
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Affiliation(s)
- Yong Li
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Jin Huang
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Cui Yu
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Rongli Mo
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Zhixian Zhu
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Zhaoxia Dong
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Xingming Hu
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Chuxiong Zhuang
- College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Wen Deng
- Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
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14
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Ji HS, Hyun TK. Physiological and sucrose metabolic responses to waterlogging stress in balloon flower ( Platycodon grandiflorus ( Jacq.) A. DC). PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2023; 29:591-600. [PMID: 37181045 PMCID: PMC10148697 DOI: 10.1007/s12298-023-01310-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 04/07/2023] [Accepted: 04/23/2023] [Indexed: 05/16/2023]
Abstract
Waterlogging stress is a major limiting factor resulting in stunted growth and loss of crop productivity, especially for root crops. However, physiological responses to waterlogging have been studied in only a few plant models. To gain insight into how balloon flower (Platycodon grandiflorus (Jacq.) A. DC) responds to waterlogging stress, we investigate changes to sucrose metabolism combined with a physiological analysis. Although waterlogging stress decreased the photosynthetic rate in balloon flower, leaves exhibited an increase in glucose (ninefold), fructose (4.7-fold), and sucrose (2.1-fold), indicating inhibition of sugar transport via the phloem. In addition, roots showed a typical response to hypoxia, such as the accumulation of proline (4.5-fold higher than in control roots) and soluble sugars (2.1-fold higher than in control roots). The activities and expression patterns of sucrose catabolizing enzymes suggest that waterlogging stress leads to a shift in the pathway of sucrose degradation from invertase to sucrose synthase (Susy), which consumes less ATP. Furthermore, we suggest that the waterlogging-stress-induced gene PlgSusy1 encodes the functional Susy enzyme, which may contribute to improving tolerance in balloon flower to waterlogging. As a first step toward understanding the waterlogging-induced regulatory mechanisms in balloon flower, we provide a solid foundation for further understanding waterlogging-induced alterations in source-sink relationships. Supplementary Information The online version contains supplementary material available at 10.1007/s12298-023-01310-y.
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Affiliation(s)
- Hyo Seong Ji
- Department of Industrial Plant Science and Technology, Chungbuk National University, Cheongju, 28644 Republic of Korea
| | - Tae Kyung Hyun
- Department of Industrial Plant Science and Technology, Chungbuk National University, Cheongju, 28644 Republic of Korea
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15
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Qu M, Zheng Y, Bi L, Yang X, Shang P, Zhou X, Zeng B, Shen B, Li W, Fan Y, Zeng B. Comparative transcriptomic analysis of the gene expression and underlying molecular mechanism of submergence stress response in orchardgrass roots. FRONTIERS IN PLANT SCIENCE 2023; 13:1104755. [PMID: 36704155 PMCID: PMC9871833 DOI: 10.3389/fpls.2022.1104755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Accepted: 12/20/2022] [Indexed: 06/18/2023]
Abstract
INTRODUCTION Submergence stress creates a hypoxic environment. Roots are the first plant organ to face these low-oxygen conditions, which causes damage and affects the plant growth and yield. Orchardgrass (Dactylis glomerata L.) is one of the most important cold-season forage grasses globally. However, their submergence stress-induced gene expression and the underlying molecular mechanisms of orchardgrass roots are still unknown. METHODS Using the submergence-tolerant 'Dianbei' and submergence-sensitive 'Anba', the transcriptomic analysis of orchardgrass roots at different time points of submergence stress (0 h, 8 h, and 24 h) was performed. RESULTS We obtained 118.82Gb clean data by RNA-Seq. As compared with the control, a total of 6663 and 9857 differentially expressed genes (DEGs) were detected in Dianbei, while 7894 and 11215 DEGs were detected in Anba at 8 h and 24 h post-submergence-stress, respectively. Gene Ontology (GO) enrichment analysis obtained 986 terms, while Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis obtained 123 pathways. Among them, the DEGs in plant hormones, mitogen-activated protein kinase (MAPK) and Ca2+ signal transduction were significantly differentially expressed in Dianbei, but not in Anba. DISCUSSION This study was the first to molecularly elucidate the submergence stress tolerance in the roots of two orchardgrass cultivars. These findings not only enhanced our understanding of the orchardgrass submergence tolerance, but also provided a theoretical basis 36 for the cultivation of submergence-tolerant forage varieties.
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Affiliation(s)
- Minghao Qu
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Yuqian Zheng
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Lei Bi
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Xingyun Yang
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Panpan Shang
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Xiaoli Zhou
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Bing Zeng
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Bingna Shen
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Wenwen Li
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Yan Fan
- Institute of Prataculture, Chongqing Academy of Animal Science, Chongqing, China
| | - Bing Zeng
- College of Animal Science and Technology, Southwest University, Chongqing, China
- Chongqing University Herbivore Engineering Research Center, Chongqing, China
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Brazel AJ, Graciet E. Complexity of Abiotic Stress Stimuli: Mimicking Hypoxic Conditions Experimentally on the Basis of Naturally Occurring Environments. Methods Mol Biol 2023; 2642:23-48. [PMID: 36944871 DOI: 10.1007/978-1-0716-3044-0_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
Plants require oxygen to respire and produce energy. Plant cells are exposed to low oxygen levels (hypoxia) in different contexts and have evolved conserved molecular responses to hypoxia. Both environmental and developmental factors can influence intracellular oxygen concentrations. In nature, plants can experience hypoxic conditions when the soil becomes saturated with water following heavy precipitation (i.e., waterlogging). Hypoxia can also arise in specific tissues that have poor gas exchange with atmospheric oxygen. In this case, hypoxic niches that are physiologically and developmentally relevant may form. To dissect the molecular mechanisms underlying the regulation of hypoxia response in plants, a wide range of hypoxia-inducing methods have been used in the laboratory setting. Yet, the different characteristics, pros and cons of each of these hypoxia treatments are seldom compared between methods, and with natural forms of hypoxia. In this chapter, we present both environmental and developmental forms of hypoxia that plants encounter in the wild, as well as the different experimental hypoxia treatments used to mimic them in the laboratory setting, with the aim of informing on what experimental approaches might be most appropriate to the questions addressed, including stress signaling and regulation.
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Huo L, Wang H, Wang Q, Gao Y, Xu K, Sun X. Exogenous treatment with melatonin enhances waterlogging tolerance of kiwifruit plants. FRONTIERS IN PLANT SCIENCE 2022; 13:1081787. [PMID: 36570925 PMCID: PMC9780670 DOI: 10.3389/fpls.2022.1081787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
Abstract
Waterlogging stress has an enormous negative impact on the kiwifruit yield and quality. The protective role of exogenous melatonin on water stress has been widely studied, especially in drought stress. However, the research on melatonin-induced waterlogging tolerance is scarce. Here, we found that treatment with exogenous melatonin could effectively alleviate the damage on kiwifruit plants in response to waterlogging treatment. This was accompanied by higher antioxidant activity and lower ROS accumulation in kiwifruit roots during stress period. The detection of changes in amino acid levels of kiwifruit roots during waterlogging stress showed a possible interaction between melatonin and amino acid metabolism, which promoted the tolerance of kiwifruit plants to waterlogging. The higher levels of GABA and Pro in the roots of melatonin-treated kiwifruit plants partly contributed to their improved waterlogging tolerance. In addition, some plant hormones were also involved in the melatonin-mediated waterlogging tolerance, such as the enhancement of ACC accumulation. This study discussed the melatonin-mediated water stress tolerance of plants from the perspective of amino acid metabolism for the first time.
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Affiliation(s)
| | | | | | | | - Kai Xu
- *Correspondence: Kai Xu, ; Liuqing Huo,
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18
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Nurrahma AHI, Yabuta S, Junaedi A, Sakagami JI. Different survival strategies involve carbon translocation rather than de novo C assimilation under complete submergence in rice plant. PHOTOSYNTHESIS RESEARCH 2022; 154:183-193. [PMID: 36169786 DOI: 10.1007/s11120-022-00959-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 08/24/2022] [Indexed: 06/16/2023]
Abstract
This study investigated the effect of transient submergence on the recovery of photosynthetic activity and translocation of photosynthate in IR67520 (Sub1A genotype) and IR72442 (non-Sub1A genotype) using 13C-labeled tracer, coupled with some photosynthetic physiological assessments. Plant growth, photosynthetic capacity, and photosynthetic recovery were studied by treating the two rice genotypes without or completely submerged for 7 days in transparent acrylic tanks filled with water to a depth of 80 cm, followed by 7 days of reaeration. Results revealed that the IR67520 was able to obtain new carbon source for assimilation during at 7 days of recovery periods. The IR72442 genotype partitioned 13C to the newly developed upper leaves more than the IR67520 genotype did. This was due to its inability to obtain CO2 from other source during post submergence. Recovery of chlorophyll content, ability to retain higher biomass, and ability to grow faster at 7 days of recovery periods also indicated the ability of Sub1A genotype to reactivate its photosynthetic capacity.
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Affiliation(s)
- Arinal Haq Izzawati Nurrahma
- The United Graduate School in Agriculture Sciences, Kagoshima University, Kagoshima, Japan
- Research Center for Food Crops, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Shin Yabuta
- Faculty of Agriculture, Kagoshima University, Kagoshima, Japan
| | - Ahmad Junaedi
- Faculty of Agriculture, Bogor Agricultural University, Bogor, Indonesia
| | - Jun-Ichi Sakagami
- The United Graduate School in Agriculture Sciences, Kagoshima University, Kagoshima, Japan.
- Faculty of Agriculture, Kagoshima University, Kagoshima, Japan.
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Agualongo DAP, Da-Silva CJ, Garcia N, de Oliveira FK, Shimoia EP, Posso DA, de Oliveira ACB, de Oliveira DDSC, do Amarante L. Waterlogging priming alleviates the oxidative damage, carbohydrate consumption, and yield loss in soybean ( Glycine max) plants exposed to waterlogging. FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:1029-1042. [PMID: 35908797 DOI: 10.1071/fp22030] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 07/15/2022] [Indexed: 06/15/2023]
Abstract
In this study, we tested whether waterlogging priming at the vegetative stage would mitigate a subsequent waterlogging event at the reproductive stage in soybean [Glycine max (L.) Merr.]. Plants (V3 stage) were subjected to priming for 7days and then exposed to waterlogging stress for 5days (R2 stage) with non-primed plants. Roots and leaves were sampled on the fifth day of waterlogging and the second and fifth days of reoxygenation. Overall, priming decreased the H2 O2 concentration and lipid peroxidation in roots and leaves during waterlogging and reoxygenation. Priming also decreased the activity of antioxidative enzymes in roots and leaves and increased the foliar concentration of phenols and photosynthetic pigments. Additionally, priming decreased fermentation and alanine aminotransferase activity during waterlogging and reoxygenation. Finally, priming increased the concentration of amino acids, sucrose, and total soluble sugars in roots and leaves during waterlogging and reoxygenation. Thus, primed plants were higher and more productive than non-primed plants. Our study shows that priming alleviates oxidative stress, fermentation, and carbohydrate consumption in parallel to increase the yield of soybean plants exposed to waterlogging and reoxygenation.
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Affiliation(s)
- Darwin Alexis Pomagualli Agualongo
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão 96160-000, Brazil; and State University of Bolívar, Guaranda 020150, Ecuador
| | | | - Natália Garcia
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão 96160-000, Brazil
| | | | | | - Douglas Antônio Posso
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão 96160-000, Brazil
| | | | | | - Luciano do Amarante
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão 96160-000, Brazil
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20
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Zhao N, Li C, Yan Y, Wang H, Wang L, Jiang J, Chen S, Chen F. The transcriptional coactivator CmMBF1c is required for waterlogging tolerance in Chrysanthemum morifolium. HORTICULTURE RESEARCH 2022; 9:uhac215. [PMID: 36479581 PMCID: PMC9720447 DOI: 10.1093/hr/uhac215] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 09/15/2022] [Indexed: 06/17/2023]
Abstract
Waterlogging is one of the most serious abiotic stressors affecting Chrysanthemum morifolium during its lifespan. However, the molecular mechanisms underlying the waterlogging tolerance of chrysanthemum remain unclear. In this study, we discovered that the transcriptional coactivator MULTIPROTEIN BRIDGING FACTOR 1c (CmMBF1c) was significantly induced by waterlogging stress in chrysanthemums. Promoter sequence analysis and transient dual-luciferase assay using chrysanthemum protoplasts showed that the waterlogging-tolerant cultivar 'Nannongxuefeng' carried more response elements involved in waterlogging and hypoxia stress compared with the waterlogging-sensitive cultivar 'Qinglu', conferring on 'Nannongxuefeng' a stronger hypoxia responsive activity and higher CmMBF1c expression under waterlogging conditions. Subcellular localization and transcriptional activity assays showed that CmMBF1c protein was localized to the nucleus and had no transcriptional activation activity. Overexpression of CmMBF1c in 'Qinglu' enhanced its waterlogging tolerance by promoting its reactive oxygen species (ROS) scavenging ability and maintaining low ROS levels. However, RNAi-mediated knockdown of CmMBF1c in cultivar 'Nannongxuefeng' resulted in the opposite tendency. Yeast two-hybrid screening and tobacco bimolecular fluorescence complementation assays revealed that CmHRE2, a pivotal regulator of hypoxia response, could interact with CmMBF1c. In summary, this study demonstrates that CmMBF1c improves chrysanthemum waterlogging tolerance by regulating its ROS signaling pathway and interacting with CmHRE2. These findings together offer, to our knowledge, new mechanistic insights into chrysanthemum waterlogging tolerance and provide a rational foundation for future research on the genetic improvement of horticultural crops for waterlogging stress tolerance.
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Affiliation(s)
| | | | - Yajun Yan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Haibin Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Likai Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Jiafu Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Sumei Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
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21
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Reynaert S, Zi L, AbdElgawad H, De Boeck HJ, Vindušková O, Nijs I, Beemster G, Asard H. Does previous exposure to extreme precipitation regimes result in acclimated grassland communities? THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156368. [PMID: 35654184 DOI: 10.1016/j.scitotenv.2022.156368] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 05/26/2022] [Accepted: 05/27/2022] [Indexed: 06/15/2023]
Abstract
Climate change will likely increase weather persistence in the mid-latitudes, resulting in precipitation regimes (PR) with longer dry and wet periods compared to historic averages. This could affect terrestrial ecosystems substantially through the increased occurrence of repeated, prolonged drought and water logging conditions. Climate history is an important determinant of ecosystem responses to consecutive environmental extremes, through direct damage, community restructuring as well as morphological and physiological acclimation in species or individuals. However, it is unclear how community restructuring and individual metabolic acclimation effects interact to determine ecosystem responses to subsequent climate extremes. Here, we investigated, if and how, differences in exposure to extreme or historically normal PR induced long-lasting (i.e. legacy) effects at the level of community (e.g., species composition), plant (e.g., biomass), and molecular composition (e.g., sugars, lipids, stress markers). Experimental grassland communities were exposed to long (extreme) or short (historically normal) dry/wet cycles in year 1 (Y1), followed by exposure to an identical PR or the opposite PR in year 2 (Y2). Results indicate that exposure to extreme PR in Y1, reduced diversity but induced apparent acclimation effects in all climate scenarios, stimulating biomass (higher productivity and structural sugar content) in Y2. In contrast, plants pre-exposed to normal PR, showed more activated stress responses (higher proline and antioxidants) under extreme PR in Y2. Overall, Y1 acclimation effects were strongest in the dominant grasses, indicating comparatively high phenotypical plasticity. However, Y2 drought intensity also correlated with grass productivity and structural sugar findings, suggesting that responses to short-term soil water deficits contributed to the observed patterns. Interactions between different legacy effects are discussed. We conclude that more extreme PR will likely alter diversity in the short-to midterm and select for acclimated grassland communities with increased productivity and attenuated molecular stress responses under future climate regimes.
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Affiliation(s)
- Simon Reynaert
- Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, B-2610 Wilrijk, Belgium
| | - Lin Zi
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020 Antwerp, Belgium.
| | - Hamada AbdElgawad
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020 Antwerp, Belgium; Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, 62511, Egypt
| | - Hans J De Boeck
- Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, B-2610 Wilrijk, Belgium
| | - Olga Vindušková
- Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, B-2610 Wilrijk, Belgium; Institute for Environmental Studies, Charles University, Prague 128 01, Czech Republic
| | - Ivan Nijs
- Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, B-2610 Wilrijk, Belgium
| | - Gerrit Beemster
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020 Antwerp, Belgium
| | - Han Asard
- Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020 Antwerp, Belgium
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22
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Gao J, Qian Z, Zhang Y, Zhuang S. Exogenous spermidine regulates the anaerobic enzyme system through hormone concentrations and related-gene expression in Phyllostachys praecox roots under flooding stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 186:182-196. [PMID: 35868108 DOI: 10.1016/j.plaphy.2022.07.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 07/01/2022] [Indexed: 06/15/2023]
Abstract
PURPOSE Acclimation to hypoxia and anoxia is important in various ecological systems, especially flooded soil. Phyllostachys pracecox is sensitive to flooding, and therefore, it is important to explore ways of alleviating hypoxia stress in the roots. In this study, we investigated the regulatory effect of spermidine (Spd) on flooded P. praecox seedlings. METHODS A batch experiment was carried out in roots treated with Spd under flooding for eight days. The following factors were subsequently measured: growth, survival rate, root respiratory activity, soluble protein and anaerobic respiration enzyme contents (pyruvate decarboxylase, PDC; alcohol dehydrogenase, ADH; lactate dehydrogenase, LDH; alanine aminotransferase, AlaAT), S-adenosylmethionine decarboxylase (SAMDC), nitrate reductase (NR), ACC oxidase (ACO) and ACC synthetase (ACS) activities, free Spd, spermine (Spm) and the diamine precursor putrescine (Put) content, indole-3-acetic acid (IAA) and abscisic acid (ABA) content, ethylene emissions and expression of hormone-related genes. RESULTS Application of Spd promoted root growth (root length, volume, surface and dry weight) and root respiratory inhibition, improved the soluble protein content, and reduced the O2·- production rate, H2O2 and MDA content to alleviate the damage of roots under flooding. A significant increase in SAMDC activity, and ABA and IAA contents were also observed, along with a reduction in ethylene emissions, NR, ACO and ACS activities (p < 0.05). Exogenous Spd increased the free Spd and Spm contents in the P. praecox roots, but decreased the free Put content. Taken together, these findings suggest that hypoxia stress was alleviated. Moreover, exogenous Spd up-regulated the expression of auxin-related genes ARF1, AUX1, AUX2, AUX3 and AUX4, and down-regulated the expression of ethylene-related ACO and ACS genes during flooding. In addition, correlation and RDA analysis showed that ARF1, ACO and ACS significantly promoted the expression of auxin, ACO and ACS enzyme activities, respectively (p < 0.05), while ADH, NR, AlaAT, ethylene emissions, Put, Spd, ACS and ACO were significantly correlated with ACS, ACO, and auxin-related gene expression (p < 0.05). Overall, ethylene emissions, ACS and ACO were identified as the main drivers of ethylene and auxin-related gene structure. CONCLUSIONS These results suggest that Spd regulated hormone concentrations, the content of Spd, Spm and Put, and related gene expression, in turn regulating physiological changes such as anaerobic enzyme activity, mitigating flooding stress in the roots and improving overall growth. Spd therefore has the potential to improve the adaptability of P. praecox to flooding stress.
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Affiliation(s)
- Jianshuang Gao
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhuangzhuang Qian
- College of Forestry, Nanjing Forestry University, 159 Longpan Road, Nanjing, 210037, China
| | - Yuhe Zhang
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Shunyao Zhuang
- State Key Lab of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
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23
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Santos CC, Scalon SPQ, Foresti AC, Reis LC, Dresch DM. The role of silicon in the mitigation of water stress in Eugenia myrcianthes Nied. seedlings. BRAZ J BIOL 2022; 82:e260420. [PMID: 36000691 DOI: 10.1590/1519-6984.260420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 06/07/2022] [Indexed: 11/22/2022] Open
Abstract
Silicon (Si) is a beneficial element that can mitigate effects of water stress on photosynthetic metabolism and plant growth. Thus, the aimed was to evaluate the effect of Si in mitigating the stressful effect of water deficit and flooding in Eugenia myrcianthes Nied. seedlings. The seedlings received three silicon doses (0, 2, and 4 mmol) and were subjected to two water regimes (I - continuous irrigation and S - water fluctuation, characterized as water stress obtained by two cycles of water regimes: irrigation suspension and flooding). Each cycle was ended when the seedlings had a photosynthetic rate close to zero (P0) when the stressful irrigation condition was normalized until the photosynthetic rate reached the values of the control seedlings (REC). The evaluations were carried out in five periods: T0 - initial seedling condition; 1st and 2nd P0; and 1st and 2nd REC. The E. myrcianthes seedlings reached P0 at 22 and 50 days under water deficit and flooding, respectively. Water stress caused damage to photochemical activities in photosystem II. E. myrcianthes is a species sensitive to water stress, but capable of adjusting to water fluctuation, and the application of 2 mmol Si contributed to the regulation of gas exchange, photochemical yields, and growth of this species at the deficit and flooding phases. We emphasize that E. myrcianthes seedlings have potential for resilience due to physiological plasticity, regardless of the silicon application.
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Affiliation(s)
- C C Santos
- Universidade Federal da Grande Dourados, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - S P Q Scalon
- Universidade Federal da Grande Dourados, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - A C Foresti
- Universidade Federal da Grande Dourados, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - L C Reis
- Universidade Federal da Grande Dourados, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
| | - D M Dresch
- Universidade Federal da Grande Dourados, Faculdade de Ciências Agrárias, Dourados, MS, Brasil
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24
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Górka S, Kubiak D, Ciesińska M, Niedojadło K, Tyburski J, Niedojadło J. Function of Cajal Bodies in Nuclear RNA Retention in A. thaliana Leaves Subjected to Hypoxia. Int J Mol Sci 2022; 23:ijms23147568. [PMID: 35886915 PMCID: PMC9321658 DOI: 10.3390/ijms23147568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 06/27/2022] [Accepted: 06/28/2022] [Indexed: 11/29/2022] Open
Abstract
Retention of RNA in the nucleus precisely regulates the time and rate of translation and controls transcriptional bursts that can generate profound variability in mRNA levels among identical cells in tissues. In this study, we investigated the function of Cajal bodies (CBs) in RNA retention in A. thaliana leaf nuclei during hypoxia stress was investigated. It was observed that in ncb-1 mutants with a complete absence of CBs, the accumulation of poly(A+) RNA in the leaf nuclei was lower than that in wt under stress. Moreover, unlike in root cells, CBs store less RNA, and RNA retention in the nuclei is much less intense. Our results reveal that the function of CBs in the accumulation of RNA in nuclei under stress depends on the plant organ. Additionally, in ncb-1, retention of introns of mRNA RPB1 (largest subunit of RNA polymerase II) mRNA was observed. However, this isoform is highly accumulated in the nucleus. It thus follows that intron retention in transcripts is more important than CBs for the accumulation of RNA in nuclei. Accumulated mRNAs with introns in the nucleus could escape transcript degradation by NMD (nonsense-mediated mRNA decay). From non-fully spliced mRNAs in ncb-1 nuclei, whose levels increase during hypoxia, introns are removed during reoxygenation. Then, the mRNA is transferred to the cytoplasm, and the RPB1 protein is translated. Despite the accumulation of isoforms in nuclei with retention of introns in reoxygenation, ncb-1 coped much worse with long hypoxia, and manifested faster yellowing and shrinkage of leaves.
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Affiliation(s)
- Sylwia Górka
- Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland; (S.G.); (D.K.); (M.C.); (K.N.)
- Centre For Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100 Toruń, Poland
| | - Dawid Kubiak
- Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland; (S.G.); (D.K.); (M.C.); (K.N.)
- Centre For Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100 Toruń, Poland
| | - Małgorzata Ciesińska
- Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland; (S.G.); (D.K.); (M.C.); (K.N.)
| | - Katarzyna Niedojadło
- Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland; (S.G.); (D.K.); (M.C.); (K.N.)
- Centre For Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100 Toruń, Poland
| | - Jarosław Tyburski
- Chair of Plant Physiology and Biotechnology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland;
| | - Janusz Niedojadło
- Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland; (S.G.); (D.K.); (M.C.); (K.N.)
- Centre For Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100 Toruń, Poland
- Correspondence:
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25
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Wang Z, Xue JY, Hu SY, Zhang F, Yu R, Chen D, Van de Peer Y, Jiang J, Song A, Ni L, Hua J, Lu Z, Yu C, Yin Y, Gu C. The genome of hibiscus hamabo reveals its adaptation to saline and waterlogged habitat. HORTICULTURE RESEARCH 2022; 9:uhac067. [PMID: 35480957 PMCID: PMC9039499 DOI: 10.1093/hr/uhac067] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 03/09/2022] [Indexed: 06/14/2023]
Abstract
Hibiscus hamabo is a semi-mangrove species with strong tolerance to salt and waterlogging stress. However, the molecular basis and mechanisms that underlie this strong adaptability to harsh environments remain poorly understood. Here, we assembled a high-quality, chromosome-level genome of this semi-mangrove plant and analyzed its transcriptome under different stress treatments to reveal regulatory responses and mechanisms. Our analyses suggested that H. hamabo has undergone two recent successive polyploidy events, a whole-genome duplication followed by a whole-genome triplication, resulting in an unusually large gene number (107 309 genes). Comparison of the H. hamabo genome with that of its close relative Hibiscus cannabinus, which has not experienced a recent WGT, indicated that genes associated with high stress resistance have been preferentially preserved in the H. hamabo genome, suggesting an underlying association between polyploidy and stronger stress resistance. Transcriptomic data indicated that genes in the roots and leaves responded differently to stress. In roots, genes that regulate ion channels involved in biosynthetic and metabolic processes responded quickly to adjust the ion concentration and provide metabolic products to protect root cells, whereas no such rapid response was observed from genes in leaves. Using co-expression networks, potential stress resistance genes were identified for use in future functional investigations. The genome sequence, along with several transcriptome datasets, provide insights into genome evolution and the mechanism of salt and waterlogging tolerance in H. hamabo, suggesting the importance of polyploidization for environmental adaptation.
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Affiliation(s)
- Zhiquan Wang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Jia-Yu Xue
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing 210095, China
| | - Shuai-Ya Hu
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing 210095, China
| | - Fengjiao Zhang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Ranran Yu
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Dijun Chen
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China
| | - Yves Van de Peer
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing 210095, China
- Department of Plant Biotechnology and Bioinformatics, Ghent University, VIB-UGent Center for Plant Systems Biology, B-9052 Ghent, Belgium
- Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa
| | - Jiafu Jiang
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Aiping Song
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Longjie Ni
- College of Forest Sciences, Nanjing Forestry University, Nanjing, 210037, China
| | - Jianfeng Hua
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Zhiguo Lu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Chaoguang Yu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Yunlong Yin
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
| | - Chunsun Gu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, 210014, China
- College of Forest Sciences, Nanjing Forestry University, Nanjing, 210037, China
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Jiangsu Utilization of Agricultural Germplasm, Nanjing, 210014, China
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Full-Length Transcriptome and RNA-Seq Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Kiwifruit ( Actinidia valvata). Int J Mol Sci 2022; 23:ijms23063237. [PMID: 35328659 PMCID: PMC8951935 DOI: 10.3390/ijms23063237] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 03/15/2022] [Accepted: 03/15/2022] [Indexed: 12/13/2022] Open
Abstract
Actinidia valvata possesses waterlogging tolerance; however, the mechanisms underlying this trait are poorly characterized. Here, we performed a transcriptome analysis by combining single-molecule real-time (SMRT) sequencing and Illumina RNA sequencing and investigated the physiological responses of the roots of KR5 (A. valvata, a tolerant genotype) after 0, 12, 24 and 72 h of waterlogging stress. KR5 roots responded to waterlogging stress mainly via carbohydrate and free amino acids metabolism and reactive oxygen species (ROS) scavenging pathways. Trehalose-6-phosphate synthase (TPS) activity, alcohol dehydrogenase (ADH) activity and the total free amino acid content increased significantly under waterlogging stress. The nicotinamide adenine dinucleotide-dependent glutamate synthase/alanine aminotransferase (NADH-GOGAT/AlaAT) cycle was correlated with alanine accumulation. Levels of genes encoding peroxidase (POD) and catalase (CAT) decreased and enzyme activity increased under waterlogging stress. Members of the LATERAL ORGAN BOUNDARIES (LOB), AP2/ERF-ERF, Trihelix and C3H transcription factor families were identified as potential regulators of the transcriptional response. Several hub genes were identified as key factors in the response to waterlogging stress by a weighted gene co-expression network analysis (WGCNA). Our results provide insights into the factors contributing to waterlogging tolerance in kiwifruit, providing a basis for further studies of interspecific differences in an important plant trait and for molecular breeding.
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27
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Delias DS, Da-Silva CJ, Martins AC, de Oliveira DSC, do Amarante L. Iron toxicity increases oxidative stress and impairs mineral accumulation and leaf gas exchange in soybean plants during hypoxia. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:22427-22438. [PMID: 34791629 DOI: 10.1007/s11356-021-17397-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 11/03/2021] [Indexed: 06/13/2023]
Abstract
Iron toxicity is a major challenge faced by plants in hypoxic soils; however, the consequences of such combined stress for soybean (Glycine max) remain to be determined. Here we assessed the physiological responses of soybean plants exposed to hypoxia and a high concentration of iron. Soil-grown plants cultivated in a greenhouse until the vegetative stage were transferred to a hydroponic system containing nutrient solution and subjected to two oxygen conditions (normoxia (6.2 mg L-1) and hypoxia (0.33 mg L-1)) and two iron concentrations (Fe-EDTA) (0.09 and 1.8 mM) for 72 h. During hypoxia, high concentrations of iron in the nutrient solution resulted in increased iron accumulation in roots and leaves. Under this condition, the concentrations of zinc, nitrogen, potassium, and calcium decreased in the roots, while the concentration of nitrogen and magnesium decreased in the leaves. Additionally, during hypoxia, the higher concentration of iron led to an increase in the activity of the antioxidant enzymes in roots and leaves, while decreased the levels of the photosynthetic pigments, leaf gas exchange, and plant growth. In conclusion, high iron concentration in the root medium results in a considerably more severe damage condition to soybean plants under hypoxia compared to plants grown under low iron availability.
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Affiliation(s)
- Dominique S Delias
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão, 96160-000, Brazil
| | | | - Angelita C Martins
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão, 96160-000, Brazil
| | - Denise S C de Oliveira
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão, 96160-000, Brazil
| | - Luciano do Amarante
- Departamento de Botânica, Universidade Federal de Pelotas, Capão do Leão, 96160-000, Brazil
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28
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Transcriptome analysis of gibberellins and abscisic acid during the flooding response in Fokienia hodginsii. PLoS One 2022; 17:e0263530. [PMID: 35148337 PMCID: PMC8836328 DOI: 10.1371/journal.pone.0263530] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Accepted: 01/21/2022] [Indexed: 11/19/2022] Open
Abstract
Flooding is one of the main abiotic stresses suffered by plants. Plants respond to flooding stress through regulating their morphological structure, endogenous hormone biosynthesis, and genetic signaling transduction. We previously found that Fokienia hodginsii varieties originating from Gutian exhibited typical flooding tolerance traits compared to three other provenances (Yongzhou, Sanming, Nanping), expressed as increased height, longer diameter at breast height (DBH), and smaller branch angle. Herein, the changes in endogenous gibberellins (GA) and abscisic acid (ABA) contents were measured under flooding stress in F. hodginsii, and ABA was found to decrease, whereas GA increased with time. Furthermore, the GA and ABA contents of the varieties originating from Gutian and the three other provenances were measured, and the results indicated that F. hodginsii from Gutian could respond more rapidly to flooding stress. The transcriptomes of the varieties originating from Gutian and the other three provenances were compared using RNA sequencing to explore the underlying genetic mechanisms of the flood-resistant phenotypes in F. hodginsii. The results indicated that two flood-stress response genes (TRINITY_DN142_c0_g2 and TRINITY_DN7657_c0_g1) were highly related to both the ABA and GA response in F. hodginsii.
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León J, Castillo MC, Gayubas B. The hypoxia-reoxygenation stress in plants. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5841-5856. [PMID: 33367851 PMCID: PMC8355755 DOI: 10.1093/jxb/eraa591] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 12/16/2020] [Indexed: 05/04/2023]
Abstract
Plants are very plastic in adapting growth and development to changing adverse environmental conditions. This feature will be essential for plants to survive climate changes characterized by extreme temperatures and rainfall. Although plants require molecular oxygen (O2) to live, they can overcome transient low-O2 conditions (hypoxia) until return to standard 21% O2 atmospheric conditions (normoxia). After heavy rainfall, submerged plants in flooded lands undergo transient hypoxia until water recedes and normoxia is recovered. The accumulated information on the physiological and molecular events occurring during the hypoxia phase contrasts with the limited knowledge on the reoxygenation process after hypoxia, which has often been overlooked in many studies in plants. Phenotypic alterations during recovery are due to potentiated oxidative stress generated by simultaneous reoxygenation and reillumination leading to cell damage. Besides processes such as N-degron proteolytic pathway-mediated O2 sensing, or mitochondria-driven metabolic alterations, other molecular events controlling gene expression have been recently proposed as key regulators of hypoxia and reoxygenation. RNA regulatory functions, chromatin remodeling, protein synthesis, and post-translational modifications must all be studied in depth in the coming years to improve our knowledge on hypoxia-reoxygenation transition in plants, a topic with relevance in agricultural biotechnology in the context of global climate change.
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Affiliation(s)
- José León
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas – Universidad Politécnica de Valencia), Valencia, Spain
- Correspondence:
| | - Mari Cruz Castillo
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas – Universidad Politécnica de Valencia), Valencia, Spain
| | - Beatriz Gayubas
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas – Universidad Politécnica de Valencia), Valencia, Spain
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Tong C, Hill CB, Zhou G, Zhang XQ, Jia Y, Li C. Opportunities for Improving Waterlogging Tolerance in Cereal Crops-Physiological Traits and Genetic Mechanisms. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10081560. [PMID: 34451605 PMCID: PMC8401455 DOI: 10.3390/plants10081560] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 07/12/2021] [Accepted: 07/28/2021] [Indexed: 05/22/2023]
Abstract
Waterlogging occurs when soil is saturated with water, leading to anaerobic conditions in the root zone of plants. Climate change is increasing the frequency of waterlogging events, resulting in considerable crop losses. Plants respond to waterlogging stress by adventitious root growth, aerenchyma formation, energy metabolism, and phytohormone signalling. Genotypes differ in biomass reduction, photosynthesis rate, adventitious roots development, and aerenchyma formation in response to waterlogging. We reviewed the detrimental effects of waterlogging on physiological and genetic mechanisms in four major cereal crops (rice, maize, wheat, and barley). The review covers current knowledge on waterlogging tolerance mechanism, genes, and quantitative trait loci (QTL) associated with waterlogging tolerance-related traits, the conventional and modern breeding methods used in developing waterlogging tolerant germplasm. Lastly, we describe candidate genes controlling waterlogging tolerance identified in model plants Arabidopsis and rice to identify homologous genes in the less waterlogging-tolerant maize, wheat, and barley.
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Affiliation(s)
- Cen Tong
- Western Crop Genetic Alliance, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia; (C.T.); (C.B.H.); (G.Z.); (X.-Q.Z.); (Y.J.)
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Camilla Beate Hill
- Western Crop Genetic Alliance, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia; (C.T.); (C.B.H.); (G.Z.); (X.-Q.Z.); (Y.J.)
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Gaofeng Zhou
- Western Crop Genetic Alliance, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia; (C.T.); (C.B.H.); (G.Z.); (X.-Q.Z.); (Y.J.)
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Xiao-Qi Zhang
- Western Crop Genetic Alliance, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia; (C.T.); (C.B.H.); (G.Z.); (X.-Q.Z.); (Y.J.)
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Yong Jia
- Western Crop Genetic Alliance, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia; (C.T.); (C.B.H.); (G.Z.); (X.-Q.Z.); (Y.J.)
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - Chengdao Li
- Western Crop Genetic Alliance, College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia; (C.T.); (C.B.H.); (G.Z.); (X.-Q.Z.); (Y.J.)
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
- Department of Primary Industries and Regional Development, 3-Baron-Hay Court, South Perth, WA 6151, Australia
- Correspondence: ; Tel.: +61-893-607-519
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Li Y, Shi LC, Yang J, Qian ZH, He YX, Li MW. Physiological and transcriptional changes provide insights into the effect of root waterlogging on the aboveground part of Pterocarya stenoptera. Genomics 2021; 113:2583-2590. [PMID: 34111522 DOI: 10.1016/j.ygeno.2021.06.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 05/31/2021] [Accepted: 06/04/2021] [Indexed: 11/17/2022]
Abstract
Pterocarya stenoptera is a tree species that occurs along rivers and has high tolerance to waterlogging. Identification of waterlogging response genes in the aboveground part of P. stenoptera will increase understanding of tolerance mechanisms under root waterlogging conditions. In this study, we employed four physiological indicators and comparative transcriptome sequencing to investigate the waterlogging tolerance mechanism in P. stenoptera. The physiological results showed that the aboveground part of P. stenoptera was not obviously affected by waterlogging. P. stenoptera enhanced waterlogging tolerance by increasing the synthesis of alpha-Linolenic acids and flavonoids and activating the jasmonic acid, ethylene, and auxin signaling pathways. Our results confirmed our hypothesis that P. stenoptera, a species that is widely distributed along rivers, has evolved a range of mechanisms in response to waterlogging. Our research will provide new insights for understanding the tolerance mechanism of species to waterlogging.
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Affiliation(s)
- Yong Li
- Innovation Platform of Molecular Biology, College of Landscape and Art, Henan Agricultural University, Zhengzhou, China
| | - Long-Chen Shi
- Innovation Platform of Molecular Biology, College of Landscape and Art, Henan Agricultural University, Zhengzhou, China
| | - Jing Yang
- Innovation Platform of Molecular Biology, College of Landscape and Art, Henan Agricultural University, Zhengzhou, China
| | - Zhi-Hao Qian
- Innovation Platform of Molecular Biology, College of Landscape and Art, Henan Agricultural University, Zhengzhou, China
| | - Yan-Xia He
- School of Life Sciences, Henan University, Kaifeng, China
| | - Ming-Wan Li
- College of Forestry, Henan Agricultural University, Zhengzhou, China.
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Saddhe AA, Manuka R, Penna S. Plant sugars: Homeostasis and transport under abiotic stress in plants. PHYSIOLOGIA PLANTARUM 2021; 171:739-755. [PMID: 33215734 DOI: 10.1111/ppl.13283] [Citation(s) in RCA: 84] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 09/10/2020] [Accepted: 11/16/2020] [Indexed: 05/21/2023]
Abstract
The sessile nature of plants' life is endowed with a highly evolved defense system to adapt and survive under environmental extremes. To combat such stresses, plants have developed complex and well-coordinated molecular and metabolic networks encompassing genes, metabolites, and acclimation responses. These modulate growth, photosynthesis, osmotic maintenance, and carbohydrate homeostasis. Under a given stress condition, sugars act as key players in stress perception, signaling, and are a regulatory hub for stress-mediated gene expression ensuring responses of osmotic adjustment, scavenging of reactive oxygen species, and maintaining the cellular energy status through carbon partitioning. Several sugar transporters are known to regulate carbohydrate partitioning and key signal transduction steps involved in the perception of biotic and abiotic stresses. Sugar transporters such as SUGARS WILL EVENTUALLY BE EXPORTED TRANSPORTER (SWEETs), SUCROSE TRANSPORTERS (SUTs), and MONOSACCHARIDE TRANSPORTERS (MSTs) are involved in sugar loading and unloading as well as long-distance transport (source to sink) besides orchestrating oxidative and osmotic stress tolerance. It is thus necessary to understand the structure-function relationship of these sugar transporters to fine-tune the abiotic stress-modulated responses. Advances in genomics have unraveled many sugars signaling components playing a key role in cross-talk in abiotic stress pathways. An integrated omics approach may aid in the identification and characterization of sugar transporters that could become targets for developing stress tolerance plants to mitigate climate change effects and improve crop yield. In this review, we have presented an up-to-date analysis of the sugar homeostasis under abiotic stresses as well as describe the structure and functions of sugar transporters under abiotic stresses.
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Affiliation(s)
- Ankush A Saddhe
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani - K. K. Birla Goa Campus, Zuarinagar Goa, India
| | - Rakesh Manuka
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India
| | - Suprasanna Penna
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India
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Mechanisms of the Morphological Plasticity Induced by Phytohormones and the Environment in Plants. Int J Mol Sci 2021; 22:ijms22020765. [PMID: 33466729 PMCID: PMC7828791 DOI: 10.3390/ijms22020765] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/11/2021] [Accepted: 01/12/2021] [Indexed: 01/05/2023] Open
Abstract
Plants adapt to environmental changes by regulating their development and growth. As an important interface between plants and their environment, leaf morphogenesis varies between species, populations, or even shows plasticity within individuals. Leaf growth is dependent on many environmental factors, such as light, temperature, and submergence. Phytohormones play key functions in leaf development and can act as molecular regulatory elements in response to environmental signals. In this review, we discuss the current knowledge on the effects of different environmental factors and phytohormone pathways on morphological plasticity and intend to summarize the advances in leaf development. In addition, we detail the molecular mechanisms of heterophylly, the representative of leaf plasticity, providing novel insights into phytohormones and the environmental adaptation in plants.
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Cheng H, Liu Y, Jiang ZY, Wang YS. Radial oxygen loss is correlated with nitrogen nutrition in mangroves. TREE PHYSIOLOGY 2020; 40:1548-1560. [PMID: 32705132 DOI: 10.1093/treephys/tpaa089] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 10/12/2019] [Accepted: 07/06/2020] [Indexed: 06/11/2023]
Abstract
The present study aimed to explore the possible functions of radial oxygen loss (ROL) on mangrove nutrition. A field survey was conducted to explore the relations among ROL, root anatomy and leaf N in different mangrove species along a continuous tidal gradient. Three mangroves with different ROL (Avicennia marina [A. marina], Kandelia obovata and Rhizophora stylosa) were then selected to further explore the dynamics of N at the root-soil interface. The results showed that seaward pioneer mangrove species such as A. marina appeared to exhibit higher leaf N despite growing under poorer nutrient conditions. Greater leaf N in pioneer mangroves coincided with their special root structure (e.g., high porosity together with a thin lignified/suberized exodermis) and powerful ROL. An interesting positive relation was observed between ROL and leaf N in mangroves. Moreover, rhizo-box data further showed that soil nitrification was also strongly correlated with ROL. A. marina, which had the highest ROL among the three mangrove species studied, consistently possessed the highest levels of NO3-, nitrification and ammonia-oxidizing bacteria and archaea gene copies in the rhizosphere. Besides, both NO3- and NH4+ influxes were found to be higher in the roots of A. marina when compared to those of K. obovata and R. stylosa. In summary, greater N acquisition by pioneer mangroves such as A. marina was strongly correlated with ROL which would regulate N transformation and translocation at the root-soil interface. The implications of this study may be significant in mangrove nutrition and the mechanisms involved in mangrove zonation.
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Affiliation(s)
- Hao Cheng
- State Key Laboratory of Tropical Oceanography and Daya Bay Marina Biology Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164th Xingang West Road, Guangzhou 510301, China
| | - Yong Liu
- Ministry of Agriculture Key Laboratory of Mariculture Ecology and Products Quality and Safety, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 231th Xingang West Road, Guangzhou 510300, China
| | - Zhao-Yu Jiang
- State Key Laboratory of Tropical Oceanography and Daya Bay Marina Biology Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164th Xingang West Road, Guangzhou 510301, China
- College of Life Sciences, Linyi University, middle-region of Shuangling Road, Linyi 276000, China
| | - You-Shao Wang
- State Key Laboratory of Tropical Oceanography and Daya Bay Marina Biology Research Station, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164th Xingang West Road, Guangzhou 510301, China
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Cui J, Lamade E, Fourel F, Tcherkez G. δ 15 N values in plants are determined by both nitrate assimilation and circulation. THE NEW PHYTOLOGIST 2020; 226:1696-1707. [PMID: 32040199 DOI: 10.1111/nph.16480] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Accepted: 01/31/2020] [Indexed: 05/24/2023]
Abstract
Nitrogen (N) assimilation is associated with 14 N/15 N fractionation such that plant tissues are generally 15 N-depleted compared to source nitrate. In addition to nitrate concentration, the δ15 N value in plants is also influenced by isotopic heterogeneity amongst organs and metabolites. However, our current understanding of δ15 N values in nitrate is limited by the relatively small number of compound-specific data. We extensively measured δ15 N in nitrate at different time points, in sunflower and oil palm grown at fixed nitrate concentration, with nitrate circulation being varied using potassium (K) conditions and waterlogging. There were strong interorgan δ15 N differences for contrasting situations between the two species, and a high 15 N-enrichment in root nitrate. Modelling shows that this 15 N-enrichment can be explained by nitrate circulation and compartmentalisation whereby despite a numerically small flux value, the backflow of nitrate to roots via the phloem can lead to a c. 30‰ difference between leaves and roots. Accordingly, waterlogging and low K conditions, which down-regulate sap circulation, cause a decrease in the leaf-to-root isotopic difference. Our study thus suggests that plant δ15 N can be used as a natural tracer of N fluxes between organs and highlights the potential importance of δ15 N of circulating phloem nitrate.
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Affiliation(s)
- Jing Cui
- Research School of Biology, ANU Joint College of Science, Australian National University, Canberra, ACT, 2601, Australia
| | - Emmanuelle Lamade
- UPR34 Performance des systèmes de culture des plantes pérennes, Département PERSYST, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), Montpellier, 34398, France
| | - François Fourel
- UMR CNRS 5023 LEHNA, Université Claude Bernard Lyon 1, 3 rue Raphaël Dubois, Villeurbanne, 69622, France
| | - Guillaume Tcherkez
- Research School of Biology, ANU Joint College of Science, Australian National University, Canberra, ACT, 2601, Australia
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Male and Female Plants of Salix viminalis Perform Similarly to Flooding in Morphology, Anatomy, and Physiology. FORESTS 2020. [DOI: 10.3390/f11030321] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Salix viminalis L., a dioecious species, is widely distributed in riparian zones, and flooding is one of the most common abiotic stresses that this species suffers. In this study, we investigated the morphological, anatomical, and physiological responses of male vs. female plants of S. viminalis to flooding. The results showed that the plant height and root collar diameter were stimulated by flooding treatment, which corresponded with higher dry weight of the stem and leaf. However, the dry weight of the underground part decreased, which might be due to the primary root having stopped growing. The little-influenced net photosynthesis rate (Pn) under flooding treatment could guarantee rapid growth of the aboveground part, while the unaffected leaf anatomical structure and photosynthetic pigment contents could ensure the normal operation of photosynthetic apparatus. Under a flooding environment, the production ratio of superoxide free radical (O2∙-) and malondialdehyde (MDA) contents increased, indicating that the cell membrane was damaged and oxidative stress was induced. At the same time, the antioxidant enzyme system, including superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX), and osmotic adjustment substances, involving proline (Pro) and solute protein (SP), began to play a positive role in resisting flooding stress. Different from our expectation, the male and female plants of S. viminalis performed similarly under flooding, and no significant differences were discovered. The results indicate that both male and female plants of S. viminalis are tolerant to flooding. Thus, both male and female plants of S. viminalis could be planted in frequent flooding zones.
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Effects of Salt on Root Aeration, Nitrification, and Nitrogen Uptake in Mangroves. FORESTS 2019. [DOI: 10.3390/f10121131] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The potential effects of salt on the growth, root anatomy, radial oxygen loss (ROL), and nitrogen (N) dynamics in mangroves were investigated using the seedlings of Avicennia marina (Forsk.) Vierh. The results showed that a moderate salinity (200 mM NaCl) appeared to have little negative effect on the growth of A. marina. However, higher salt stresses (400 and 600 mM NaCl) significantly inhibited the biomass yield. Concentrations of N in the roots and leaves decreased sharply with increasing salinity. Nevertheless, the presence of salt directly altered root anatomy (e.g., reduced root porosity and promoted suberization within the exodermis and endodermis), leading to a significant reduction in ROL. The results further showed that reduced ROL induced by salt could restrain soil nitrification, resulting in less ammonia-oxidizing archaea and bacteria (AOA and AOB) gene copies and lower concentrations of NO3− in the soils. While increased root suberization induced by salt inhibited NH4+ and NO3− uptake and influx into the roots. In summary, this study indicated that inhibited root aeration may be a defense response to salt, however these root symptoms were not advantageous for rhizosphere nitrification and N uptake by A. marina.
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Cui J, Davanture M, Zivy M, Lamade E, Tcherkez G. Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm. THE NEW PHYTOLOGIST 2019; 223:310-322. [PMID: 30767245 DOI: 10.1111/nph.15751] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2018] [Accepted: 02/12/2019] [Indexed: 05/25/2023]
Abstract
Oil palm is by far the major oil-producing crop on the global scale, with c. 62 Mt oil produced each year. This species is a strong potassium (K)-demanding species cultivated in regions where soil K availability is generally low and waterlogging due to tropical heavy rains can limit further nutrient absorption. However, the metabolic effects of K and waterlogging have never been assessed precisely. Here, we examined the metabolic response of oil palm saplings in the glasshouse under controlled conditions (nutrient composition with low or high K availability, with or without waterlogging), using gas exchange, metabolomics and proteomics analyses. Our results showed that both low K and waterlogging have a detrimental effect on photosynthesis but stimulate leaf respiration, with differential accumulation of typical metabolic intermediates and enzymes of Krebs cycle and alternative catabolic pathways. In addition, we found a strong relationship between metabolic composition, the rate of leaf dark respiration, and cumulated respiratory loss. Advert environmental conditions (here, low K and waterlogging) therefore have an enormous effect on respiration in oil palm. Leaf metabolome and proteome appear to be good predictors of carbon balance, and open avenues for cultivation biomonitoring using functional genomics technologies.
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Affiliation(s)
- Jing Cui
- Research School of Biology, ANU Joint College of Sciences, Australian National University, Canberra, ACT, 2601, Australia
| | - Marlène Davanture
- Plateforme d'Analyse de Protéomique Paris-Sud-Ouest (PAPPSO), GQE Le Moulon, INRA, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Ferme du Moulon, Gif-sur-Yvette, 91190, France
| | - Michel Zivy
- Plateforme d'Analyse de Protéomique Paris-Sud-Ouest (PAPPSO), GQE Le Moulon, INRA, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Ferme du Moulon, Gif-sur-Yvette, 91190, France
| | - Emmanuelle Lamade
- UPR34 Performance des systèmes de culture des plantes pérennes, Département PERSYST, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), Montpellier, 34398, France
| | - Guillaume Tcherkez
- Research School of Biology, ANU Joint College of Sciences, Australian National University, Canberra, ACT, 2601, Australia
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Peivastegan B, Hadizadeh I, Nykyri J, Nielsen KL, Somervuo P, Sipari N, Tran C, Pirhonen M. Effect of wet storage conditions on potato tuber transcriptome, phytohormones and growth. BMC PLANT BIOLOGY 2019; 19:262. [PMID: 31208336 PMCID: PMC6580497 DOI: 10.1186/s12870-019-1875-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 06/06/2019] [Indexed: 05/15/2023]
Abstract
BACKGROUND Stored potato (Solanum tuberosum L.) tubers are sensitive to wet conditions that can cause rotting in long-term storage. To study the effect of water on the tuber surface during storage, microarray analysis, RNA-Seq profiling, qRT-PCR and phytohormone measurements were performed to study gene expression and hormone content in wet tubers incubated at two temperatures: 4 °C and 15 °C. The growth of the plants was also observed in a greenhouse after the incubation of tubers in wet conditions. RESULTS Wet conditions induced a low-oxygen response, suggesting reduced oxygen availability in wet tubers at both temperatures when compared to that in the corresponding dry samples. Wet conditions induced genes coding for heat shock proteins, as well as proteins involved in fermentative energy production and defense against reactive oxygen species (ROS), which are transcripts that have been previously associated with low-oxygen stress in hypoxic or anoxic conditions. Wet treatment also induced senescence-related gene expression and genes involved in cell wall loosening, but downregulated genes encoding protease inhibitors and proteins involved in chloroplast functions and in the biosynthesis of secondary metabolites. Many genes involved in the production of phytohormones and signaling were also affected by wet conditions, suggesting altered regulation of growth by wet conditions. Hormone measurements after incubation showed increased salicylic acid (SA), abscisic acid (ABA) and auxin (IAA) concentrations as well as reduced production of jasmonate 12-oxo-phytodienoic acid (OPDA) in wet tubers. After incubation in wet conditions, the tubers produced fewer stems and more roots compared to controls incubated in dry conditions. CONCLUSIONS In wet conditions, tubers invest in ROS protection and defense against the abiotic stress caused by reduced oxygen due to excessive water. Changes in ABA, SA and IAA that are antagonistic to jasmonates affect growth and defenses, causing induction of root growth and rendering tubers susceptible to necrotrophic pathogens. Water on the tuber surface may function as a signal for growth, similar to germination of seeds.
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Affiliation(s)
- Bahram Peivastegan
- Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland
| | - Iman Hadizadeh
- Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland
| | - Johanna Nykyri
- Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland
| | | | - Panu Somervuo
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - Nina Sipari
- Viikki Metabolomics Unit, Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - Cuong Tran
- Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland
- Present address: Department of Biology, Lund University, Lund, Sweden
| | - Minna Pirhonen
- Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland
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40
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Cui J, Abadie C, Carroll A, Lamade E, Tcherkez G. Responses to K deficiency and waterlogging interact via respiratory and nitrogen metabolism. PLANT, CELL & ENVIRONMENT 2019; 42:647-658. [PMID: 30242853 DOI: 10.1111/pce.13450] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Revised: 09/13/2018] [Accepted: 09/16/2018] [Indexed: 05/24/2023]
Abstract
K deficiency and waterlogging are common stresses that can occur simultaneously and impact on crop development and yield. They are both known to affect catabolism, with rather opposite effects: inhibition of glycolysis and higher glycolytic fermentative flux, respectively. But surprisingly, the effect of their combination on plant metabolism has never been examined precisely. Here, we applied a combined treatment (K availability and waterlogging) to sunflower (Helianthus annuus L.) plants under controlled greenhouse conditions and performed elemental quantitation, metabolomics, and isotope analyses at different sampling times. Whereas separate K deficiency and waterlogging caused well-known effects such as polyamines production and sugar accumulation, respectively, waterlogging altered K-induced respiration enhancement (via the C5 -branched acid pathway) and polyamine production, and K deficiency tended to suppress waterlogging-induced accumulation of Krebs cycle intermediates in leaves. Furthermore, the natural 15 N/14 N isotope composition (δ15 N) in leaf compounds shows that there was a change in nitrate circulation, with less nitrate influx to leaves under low K availablity combined with waterlogging and more isotopic dilution of lamina nitrates under high K. Our results show that K deficiency and waterlogging effects are not simply additive, reshape respiration as well as nitrogen metabolism and partitioning, and are associated with metabolomic and isotopic biomarkers of potential interest for crop monitoring.
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Affiliation(s)
- Jing Cui
- Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Cyril Abadie
- Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - Adam Carroll
- Joint Mass Spectrometry Facility, Research School of Chemistry, Australian National University, Canberra, ACT, Australia
| | - Emmanuelle Lamade
- Unité PERSYST, UPR34, Système de pérennes, Centre de Coopération Internationale en Recherche Agronomique pour le Développement, Montpellier, France
| | - Guillaume Tcherkez
- Research School of Biology, Australian National University, Canberra, ACT, Australia
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Phytohormone-Mediated Stomatal Response, Escape and Quiescence Strategies in Plants under Flooding Stress. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9020043] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Generally, flooding causes waterlogging or submergence stress which is considered as one of the most important abiotic factors that severely hinders plant growth and development. Plants might not complete their life cycle even in short duration of flooding. As biologically intelligent organisms, plants always try to resist or survive under such adverse circumstances by adapting a wide array of mechanisms including hormonal homeostasis. Under this mechanism, plants try to adapt through diverse morphological, physiological and molecular changes, including the closing of stomata, elongating of petioles, hollow stems or internodes, or maintaining minimum physiological activity to store energy to combat post-flooding stress and to continue normal growth and development. Mainly, ethylene, gibberellins (GA) and abscisic acid (ABA) are directly and/or indirectly involved in hormonal homeostasis mechanisms. Responses of specific genes or transcription factors or reactive oxygen species (ROS) maintain the equilibrium between stomatal opening and closing, which is one of the fastest responses in plants when encountering flooding stress conditions. In this review paper, the sequential steps of some of the hormone-dependent survival mechanisms of plants under flooding stress conditions have been critically discussed.
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Phukan UJ, Jeena GS, Tripathi V, Shukla RK. MaRAP2-4, a waterlogging-responsive ERF from Mentha, regulates bidirectional sugar transporter AtSWEET10 to modulate stress response in Arabidopsis. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:221-233. [PMID: 28636266 PMCID: PMC5785340 DOI: 10.1111/pbi.12762] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Revised: 04/28/2017] [Accepted: 05/19/2017] [Indexed: 05/20/2023]
Abstract
As waterlogging and successive events severely influence growth and development of economically important plants, we attempted to characterize the role of a waterlogging-responsive group I (A-6) ethylene response factor (MaRAP2-4) from Mentha arvensis. Waterlogging, ethylene and methyl jasmonate rapidly induced the expression of MaRAP2-4. MaRAP2-4 interacted with multiple cis-elements like dehydration response elements (DRE1/2), anoxia/jasmonic acid response element (JARE) and GCC box showing its involvement in multiple responses. MaRAP2-4 localizes in the nucleus and acts as a transcriptional activator. Truncation and internal deletion identified a 20 amino acids potential transactivation domain (PLPSSVDAKLEAICQSLAIN) in MaRAP2-4. MaRAP2-4 transgenic Arabidopsis showed enhanced waterlogging and subsequent oxidative stress tolerance. Microarray analysis revealed that within up-regulated genes 483, 212 and 132 promoters carry either single or multiple copies of DRE, JARE and GCC cis-element/s, respectively. Within these promoters, a large section belongs to carbohydrate metabolism/transport, including many SWEET transporters. Further analysis showed MaRAP2-4 specifically targets two positions in AtSWEEET10 promoter carrying DRE and/or GCC box that might regulate carbohydrate availability and waterlogging tolerance. These results demonstrate that MaRAP2-4 is a positive regulator of waterlogging tolerance, and as energy-consuming processes such as carbohydrate biosynthesis are reduced under waterlogging-induced hypoxia, sugar transport through SWEETs may be the primary option to make sugar available to the required tissue.
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Affiliation(s)
- Ujjal J. Phukan
- Biotechnology DivisionCSIR‐Central Institute of Medicinal and Aromatic Plants (CSIR‐CIMAP)LucknowIndia
| | - Gajendra Singh Jeena
- Biotechnology DivisionCSIR‐Central Institute of Medicinal and Aromatic Plants (CSIR‐CIMAP)LucknowIndia
| | | | - Rakesh Kumar Shukla
- Biotechnology DivisionCSIR‐Central Institute of Medicinal and Aromatic Plants (CSIR‐CIMAP)LucknowIndia
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Lei S, Zeng B, Xu S, Zhang X. Response of basal metabolic rate to complete submergence of riparian species Salix variegata in the Three Gorges reservoir region. Sci Rep 2017; 7:13885. [PMID: 29066737 PMCID: PMC5654956 DOI: 10.1038/s41598-017-13467-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 09/25/2017] [Indexed: 01/11/2023] Open
Abstract
One-year old seedlings of Salix variegata (submergence-tolerant) and Cinnamomum camphora (submergence-intolerant) were selected and subjected to complete submergence (2 m) for 1, 5, 10, and 20 days, to elucidate the submergence- tolerance mechanism of S. variegata in the Three Gorges reservoir region. The basal CO2 emission ratios (BCERs) and O2 consumption rates (OCRs) of leaf, stem, and root were determined. The basal O2 consumption rates (BOCRs) were calculated from the OCRs of different parts and their biomass allocations and used for evaluating the basal metabolic rate (BMR) of species with BCERs. The results showed that: (1) The BCERs of both species responded to flooding similarly, and no significant differences occurred between the submerged S. variegata (SS) and the submerged C. camphora (SC) seedlings, and between the control S. variegata (CS) and the control C. camphora (CC) seedlings. (2) The BOCRs of SS were significantly lower than those of SC on days 1 and 20, while no significant differences occurred between CS and CC for every duration. Therefore, the BMRs, evaluated from BOCRs rather than from BCERs, were related to submergence-tolerance of species, and the response of BMR to submergence would contribute to the survival of S. variegata seedlings under flooding.
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Affiliation(s)
- Shutong Lei
- College of Agriculture and Forestry Sciences, Linyi University, Linyi, 276005, China
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region (Ministry of Education), School of Life Sciences, Southwest University, Chongqing, 400715, China
| | - Bo Zeng
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region (Ministry of Education), School of Life Sciences, Southwest University, Chongqing, 400715, China.
| | - Shaojun Xu
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region (Ministry of Education), School of Life Sciences, Southwest University, Chongqing, 400715, China
- Forestry College, Henan University of Science and Technology, Luoyang, 471003, China
| | - Xiaoping Zhang
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region (Ministry of Education), School of Life Sciences, Southwest University, Chongqing, 400715, China
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Ren B, Dong S, Zhao B, Liu P, Zhang J. Responses of Nitrogen Metabolism, Uptake and Translocation of Maize to Waterlogging at Different Growth Stages. FRONTIERS IN PLANT SCIENCE 2017; 8:1216. [PMID: 28744299 PMCID: PMC5504228 DOI: 10.3389/fpls.2017.01216] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 06/27/2017] [Indexed: 05/21/2023]
Abstract
We performed a field experiment using the maize hybrids DengHai605 (DH605) and ZhengDan958 (ZD958) to study nitrogen uptake and translocation, key enzyme activities of nitrogen metabolism in response to waterlogging at the third leaf stage (V3), the sixth leaf stage (V6), and the 10th day after the tasseling stage (10VT). Results showed that N accumulation amount was significantly reduced after waterlogging, most greatly in the V3 waterlogging treatment (V3-W), with decreases of 41 and 37% in DH605 and ZD958, respectively. N accumulation in each organ and N allocation proportions in grains decreased significantly after waterlogging, whereas N allocation proportions increased in stem and leaf. The reduction in stem and leaf N accumulation after waterlogging was mainly caused by a decrease in dry matter accumulation, and a reduction in N translocation from stems and leaves to grains after waterlogging. Additionally, waterlogging decreased the activity of key N metabolism enzymes (nitrate reductase, glutamine, glutamate synthase, and glutamate dehydrogenase), and the most significant reduction in V3-W with a decrease of 59, 46, 35, and 26% for DH605, and 60, 53, 31, and 25 for ZD958, respectively. Waterlogging disrupted N metabolism, hindered N absorption and transportation, and decreased maize yield.
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Phukan UJ, Jeena GS, Shukla RK. WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants. FRONTIERS IN PLANT SCIENCE 2016; 7:760. [PMID: 27375634 PMCID: PMC4891567 DOI: 10.3389/fpls.2016.00760] [Citation(s) in RCA: 390] [Impact Index Per Article: 48.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2016] [Accepted: 05/17/2016] [Indexed: 05/17/2023]
Abstract
Plants in their natural habitat have to face multiple stresses simultaneously. Evolutionary adaptation of developmental, physiological, and biochemical parameters give advantage over a single window of stress but not multiple. On the other hand transcription factors like WRKY can regulate diverse responses through a complicated network of genes. So molecular orchestration of WRKYs in plant may provide the most anticipated outcome of simultaneous multiple responses. Activation or repression through W-box and W-box like sequences is regulated at transcriptional, translational, and domain level. Because of the tight regulation involved in specific recognition and binding of WRKYs to downstream promoters, they have become promising candidate for crop improvement. Epigenetic, retrograde and proteasome mediated regulation enable WRKYs to attain the dynamic cellular homeostatic reprograming. Overexpression of several WRKYs face the paradox of having several beneficial affects but with some unwanted traits. These overexpression-associated undesirable phenotypes need to be identified and removed for proper growth, development and yeild. Taken together, we have highlighted the diverse regulation and multiple stress response of WRKYs in plants along with the future prospects in this field of research.
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