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Trichoderma Enzymes in the Wine and Beer Industry. Fungal Biol 2022. [DOI: 10.1007/978-3-030-91650-3_20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Duong TBH, Ketbot P, Phitsuwan P, Waeonukul R, Tachaapaikoon C, Kosugi A, Ratanakhanokchai K, Pason P. Bioconversion of Untreated Corn Hull into L-Malic Acid by Trifunctional Xylanolytic Enzyme from Paenibacillus curdlanolyticus B-6 and Acetobacter tropicalis H-1. J Microbiol Biotechnol 2021; 31:1262-1271. [PMID: 34261852 PMCID: PMC9705945 DOI: 10.4014/jmb.2105.05044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 06/27/2021] [Accepted: 07/13/2021] [Indexed: 12/15/2022]
Abstract
L-Malic acid (L-MA) is widely used in food and non-food products. However, few microorganisms have been able to efficiently produce L-MA from xylose derived from lignocellulosic biomass (LB). The objective of this work is to convert LB into L-MA with the concept of a bioeconomy and environmentally friendly process. The unique trifunctional xylanolytic enzyme, PcAxy43A from Paenibacillus curdlanolyticus B-6, effectively hydrolyzed xylan in untreated LB, especially corn hull to xylose, in one step. Furthermore, the newly isolated, Acetobacter tropicalis strain H1 was able to convert high concentrations of xylose derived from corn hull into L-MA as the main product, which can be easily purified. The strain H1 successfully produced a high L-MA titer of 77.09 g/l, with a yield of 0.77 g/g and a productivity of 0.64 g/l/h from the xylose derived from corn hull. The process presented in this research is an efficient, low-cost and environmentally friendly biological process for the green production of L-MA from LB.
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Affiliation(s)
- Thi Bich Huong Duong
- Division of Biochemical Technology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Prattana Ketbot
- Excellent Center of Enzyme Technology and Microbial Utilization, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Paripok Phitsuwan
- Division of Biochemical Technology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Rattiya Waeonukul
- Division of Biochemical Technology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand,Excellent Center of Enzyme Technology and Microbial Utilization, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Chakrit Tachaapaikoon
- Division of Biochemical Technology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand,Excellent Center of Enzyme Technology and Microbial Utilization, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Akihiko Kosugi
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305-8686, Japan
| | - Khanok Ratanakhanokchai
- Division of Biochemical Technology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand,Excellent Center of Enzyme Technology and Microbial Utilization, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand
| | - Patthra Pason
- Division of Biochemical Technology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand,Excellent Center of Enzyme Technology and Microbial Utilization, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok 10150, Thailand,Corresponding author Phone: +662-470-7765 Fax: +662-470-7760 E-mail:
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Pedersoli WR, de Paula RG, Antoniêto ACC, Carraro CB, Taveira IC, Maués DB, Martins MP, Ribeiro LFC, Damasio ARDL, Silva-Rocha R, Filho AR, Silva RN. Analysis of the phosphorylome of trichoderma reesei cultivated on sugarcane bagasse suggests post-translational regulation of the secreted glycosyl hydrolase Cel7A. ACTA ACUST UNITED AC 2021; 31:e00652. [PMID: 34258241 PMCID: PMC8254082 DOI: 10.1016/j.btre.2021.e00652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 05/05/2021] [Accepted: 06/16/2021] [Indexed: 11/27/2022]
Abstract
Phosphorylome of Trichoderma reesei reveals phosphosites in some glycosyl hydrolases. Phosphoserine and phosphothreonine is the major phosphosites identified. Protein Kinase C is the most frequently predicted kinase in phosphorylome. The cellulase Cel7A activity is affected by dephosphorylation.
Trichoderma reesei is one of the major producers of holocellulases. It is known that in T. reesei, protein production patterns can change in a carbon source-dependent manner. Here, we performed a phosphorylome analysis of T. reesei grown in the presence of sugarcane bagasse and glucose as carbon source. In presence of sugarcane bagasse, a total of 114 phosphorylated proteins were identified. Phosphoserine and phosphothreonine corresponded to 89.6% of the phosphosites and 10.4% were related to phosphotyrosine. Among the identified proteins, 65% were singly phosphorylated, 19% were doubly phosphorylated, 12% were triply phosphorylated, and 4% displayed even higher phosphorylation. Seventy-five kinases were predicted to phosphorylate the sites identified in this work, and the most frequently predicted serine/threonine kinase was PKC1. Among phosphorylated proteins, four glycosyl hydrolases were predicted to be secreted. Interestingly, Cel7A activity, the most secreted protein, was reduced to approximately 60% after in vitro dephosphorylation, suggesting that phosphorylation might alter Cel7A structure, substrate affinity, and targeting of the substrate to its carbohydrate-binding domain. These results suggest a novel post-translational regulation of Cel7A.
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Affiliation(s)
- Wellington Ramos Pedersoli
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - Renato Graciano de Paula
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil.,Department of Physiological Sciences, Health Sciences Centre, Federal University of Espirito Santo, Vitória, ES, 29047-105, Brazil
| | - Amanda Cristina Campos Antoniêto
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - Cláudia Batista Carraro
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - Iasmin Cartaxo Taveira
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - David Batista Maués
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - Maíra Pompeu Martins
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - Liliane Fraga Costa Ribeiro
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - André Ricardo de Lima Damasio
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, 13083-970, Brazil
| | - Rafael Silva-Rocha
- Systems and Synthetic Biology Laboratory, Department of Cell and Molecular Biology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, 14049-900, Brazil
| | - Antônio Rossi Filho
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
| | - Roberto N Silva
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, 14049-900, Brazil
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Sood M, Kapoor D, Kumar V, Sheteiwy MS, Ramakrishnan M, Landi M, Araniti F, Sharma A. Trichoderma: The "Secrets" of a Multitalented Biocontrol Agent. PLANTS 2020; 9:plants9060762. [PMID: 32570799 PMCID: PMC7355703 DOI: 10.3390/plants9060762] [Citation(s) in RCA: 145] [Impact Index Per Article: 36.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 06/13/2020] [Accepted: 06/16/2020] [Indexed: 01/23/2023]
Abstract
The plant-Trichoderma-pathogen triangle is a complicated web of numerous processes. Trichoderma spp. are avirulent opportunistic plant symbionts. In addition to being successful plant symbiotic organisms, Trichoderma spp. also behave as a low cost, effective and ecofriendly biocontrol agent. They can set themselves up in various patho-systems, have minimal impact on the soil equilibrium and do not impair useful organisms that contribute to the control of pathogens. This symbiotic association in plants leads to the acquisition of plant resistance to pathogens, improves developmental processes and yields and promotes absorption of nutrient and fertilizer use efficiency. Among other biocontrol mechanisms, antibiosis, competition and mycoparasitism are among the main features through which microorganisms, including Thrichoderma, react to the presence of other competitive pathogenic organisms, thereby preventing or obstructing their development. Stimulation of every process involves the biosynthesis of targeted metabolites like plant growth regulators, enzymes, siderophores, antibiotics, etc. This review summarizes the biological control activity exerted by Trichoderma spp. and sheds light on the recent progress in pinpointing the ecological significance of Trichoderma at the biochemical and molecular level in the rhizosphere as well as the benefits of symbiosis to the plant host in terms of physiological and biochemical mechanisms. From an applicative point of view, the evidence provided herein strongly supports the possibility to use Trichoderma as a safe, ecofriendly and effective biocontrol agent for different crop species.
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Affiliation(s)
- Monika Sood
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar-Delhi G.T. Road (NH-1), Phagwara, Punjab 144411, India; (M.S.); (D.K.)
| | - Dhriti Kapoor
- School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar-Delhi G.T. Road (NH-1), Phagwara, Punjab 144411, India; (M.S.); (D.K.)
| | - Vipul Kumar
- School of Agriculture, Lovely Professional University, Delhi-Jalandhar Highway, Phagwara, Punjab 144411, India;
| | - Mohamed S. Sheteiwy
- Department of Agronomy, Faculty of Agriculture, Mansoura University, Mansoura 35516, Egypt;
| | - Muthusamy Ramakrishnan
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China;
| | - Marco Landi
- Department of Agriculture, University of Pisa, I-56124 Pisa, Italy
- CIRSEC, Centre for Climatic Change Impact, University of Pisa, Via del Borghetto 80, I-56124 Pisa, Italy
- Correspondence: (M.L.); (A.S.)
| | - Fabrizio Araniti
- Dipartimento AGRARIA, Università Mediterranea di Reggio Calabria, Località Feo di Vito, SNC I-89124 Reggio Calabria, Italy;
| | - Anket Sharma
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China;
- Correspondence: (M.L.); (A.S.)
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Kumar A, Yadav M, Tiruneh W. Debarking, pitch removal and retting: Role of microbes and their enzymes. PHYSICAL SCIENCES REVIEWS 2020. [DOI: 10.1515/psr-2019-0048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractMicrobial enzymes are green and clean alternatives for several processes in the pulp and paper industry. Enzyme treatment decreases the energy requirement and minimizes the wood losses during drum debarking. Lipophilic wood extractives are known as pitch. Pitch deposition adversely affects the pulp quality and increases equipment maintenance and operating costs during paper manufacturing. Several chemical additives have been used to remove pitch deposits. Natural seasoning of wood is used to minimize pitch content in wood, but it has some disadvantages including yield losses and decreased brightness. Controlled seasoning with white-rot fungi or albino strains of sapstain fungi is an effective tool for degradation and removal of wood extractives. Enzymes including lipase, laccase, sterol esterase, and lipooxygenase have also been used to minimize pitch-related problems. Enzymatic retting has been proved an eco-friendly and economical solution for chemical degumming and traditional retting.
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Affiliation(s)
- Amit Kumar
- Department of Biotechnology, College of Natural and Computational Sciences, Debre Markos University, Debre Markos, Ethiopia
| | - Mukesh Yadav
- Department of Biotechnology, Maharishi Markandeshwar (Deemed to be University), Mullana, Ambala, India
| | - Workinesh Tiruneh
- Department of Animal Science, College of Agriculture and Natural Resources, Debre Markos University, Debre Markos, Ethiopia
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Bibi Z, Ul Qader SA, Aman A, Ur Rehman H, Nawaz MA, Karim A, Us Salam I, Waqas M, Kamran A. Xylan deterioration approach: Purification and catalytic behavior optimization of a novel β-1,4-d-xylanohydrolase from Geobacillus stearothermophilus KIBGE-IB29. ACTA ACUST UNITED AC 2019; 21:e00299. [PMID: 30619731 PMCID: PMC6312829 DOI: 10.1016/j.btre.2018.e00299] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2018] [Revised: 12/16/2018] [Accepted: 12/17/2018] [Indexed: 12/05/2022]
Abstract
β-1,4-d-Xylanohydrolase from Geobacillus stearothermophilus KIBGE-IB29 was purified and characterized. The catalytic properties revealed significant stability over broad pH and temperature range. Native-PAGE and In-gel activity assay were carried out. Various organic solvents and detergents significantly improved the enzyme activity. β-1,4-d-Xylanohydrolase showed excellent storage stability for prospective industrial use.
The β-1,4-d-xylanohydrolase is an industry valuable catalytic protein and used to synthesize xylooligosaccharides and xylose. In the current study, β-1,4-d-xylanohydrolase from Geobacillus stearothermophilus KIBGE-IB29 was partially purified up to 9.5-fold with a recovery yield of 52%. It exhibited optimal catalytic activity at pH-7.0 and 50 °C within 5 min. Almost 50% activity retained at pH-4.0 to 9.0 however, 70% activity observed within the range of 40 °C to 70 °C. The β-1,4-d-xylanohydrolase showed a significant hydrolytic pattern with 48.7 kDa molecular mass. It was found that the enzymatic activity improved up to 160% with 1.0 mM ethanol. Moreover, the activity of enzyme drastically increased up to 2.3 and 1.5 fold when incubated with Tween 80 and Triton X-100 (1.0 mM), respectively. The β-1,4-d-xylanohydrolase also retained 72% activity at −80 °C after 180 days. Such a remarkable biochemical properties of β-1,4-d-xylanohydrolase make it possible to forecast its potential use in textile and food industries.
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Affiliation(s)
- Zainab Bibi
- Department of Biotechnology, Federal Urdu University of Arts, Science and Technology (FUUAST), Gulshan-e-Iqbal Campus, Karachi, 75300, Pakistan
| | - Shah Ali Ul Qader
- Department of Biochemistry, University of Karachi, Karachi, 75270, Pakistan
| | - Afsheen Aman
- The Karachi Institute of Biotechnology and Genetic Engineering (KIBGE), University of Karachi, Karachi, 75270, Pakistan
| | - Haneef Ur Rehman
- Department of Chemistry, University of Turbat, Kech, Balochistan, Pakistan
| | - Muhammad Asif Nawaz
- Department of Biotechnology, Shaheed Benazir Bhutto University, Sheringal, Dir Upper, KPK, Pakistan
| | - Asad Karim
- Jamil-Ur-Rahman Center for Genome Research, Dr. Punjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Science (ICCBS), University of Karachi, Karachi, 75270, Pakistan
| | - Irum Us Salam
- Department of Biotechnology, Federal Urdu University of Arts, Science and Technology (FUUAST), Gulshan-e-Iqbal Campus, Karachi, 75300, Pakistan
| | - Muhammad Waqas
- Department of Biotechnology, Federal Urdu University of Arts, Science and Technology (FUUAST), Gulshan-e-Iqbal Campus, Karachi, 75300, Pakistan
| | - Aysha Kamran
- Georg-August University School of Science (GAUSS), Georg-August-University Goettingen, Germany.,Department of Biotechnology, University of Karachi, Karachi-75270, Pakistan
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Bibi Z, Nawaz MA, Irum-Us-Salam, Waqas M, Aman A, Qader SAU. Significance of metal ions, solvents and surfactants to improve the xylan degrading behavior of β-1,4-D-xylanohydrolase from Geobacillus stearothermophilus KIBGE-IB29. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2019. [DOI: 10.1016/j.bcab.2018.11.028] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Sharma S, Kour D, Rana KL, Dhiman A, Thakur S, Thakur P, Thakur S, Thakur N, Sudheer S, Yadav N, Yadav AN, Rastegari AA, Singh K. Trichoderma: Biodiversity, Ecological Significances, and Industrial Applications. RECENT ADVANCEMENT IN WHITE BIOTECHNOLOGY THROUGH FUNGI 2019. [DOI: 10.1007/978-3-030-10480-1_3] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Brandt SC, Ellinger B, van Nguyen T, Thi QD, van Nguyen G, Baschien C, Yurkov A, Hahnke RL, Schäfer W, Gand M. A unique fungal strain collection from Vietnam characterized for high performance degraders of bioecological important biopolymers and lipids. PLoS One 2018; 13:e0202695. [PMID: 30161149 PMCID: PMC6117010 DOI: 10.1371/journal.pone.0202695] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Accepted: 08/07/2018] [Indexed: 11/18/2022] Open
Abstract
Fungal strains are abundantly used throughout all areas of biotechnology and many of them are adapted to degrade complex biopolymers like chitin or lignocellulose. We therefore assembled a collection of 295 fungi from nine different habitats in Vietnam, known for its rich biodiversity, and investigated their cellulase, chitinase, xylanase and lipase activity. The collection consists of 70 isolates from wood, 55 from soil, 44 from rice straw, 3 found on fruits, 24 from oil environments (butchery), 12 from hot springs, 47 from insects as well as 27 from shrimp shells and 13 strains from crab shells. These strains were cultivated and selected by growth differences to enrich phenotypes, resulting in 211 visually different fungi. DNA isolation of 183 isolates and phylogenetic analysis was performed and 164 species were identified. All were subjected to enzyme activity assays, yielding high activities for every investigated enzyme set. In general, enzyme activity corresponded with the environment of which the strain was isolated from. Therefore, highest cellulase activity strains were isolated from wood substrates, rice straw and soil and similar substrate effects were observed for chitinase and lipase activity. Xylanase activity was similarly distributed as cellulase activity, but substantial activity was also found from fungi isolated from insects and shrimp shells. Seven strains displayed significant activities against three of the four tested substrates, while three degraded all four investigated carbon sources. The collection will be an important source for further studies. Therefore representative strains were made available to the scientific community and deposited in the public collection of the Leibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig.
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Affiliation(s)
- Sophie C. Brandt
- Department of Molecular Phytopathology, University Hamburg, Hamburg, Germany
| | - Bernhard Ellinger
- Department ScreeningPort, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Hamburg, Germany
| | - Thuat van Nguyen
- Department of Molecular Phytopathology, University Hamburg, Hamburg, Germany
| | - Quyen Dinh Thi
- Institue of Biotechnology, Vietnam Academy of Science and Technology, Cau Giay, Hanoi, Vietnam
| | - Giang van Nguyen
- Faculty of Biotechnology, Vietnam National University of Agriculture, Trâu Quỳ, Gia Lâm, Hanoi, Vietnam
| | - Christiane Baschien
- Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
| | - Andrey Yurkov
- Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
| | - Richard L. Hahnke
- Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
| | - Wilhelm Schäfer
- Department of Molecular Phytopathology, University Hamburg, Hamburg, Germany
| | - Martin Gand
- Department of Molecular Phytopathology, University Hamburg, Hamburg, Germany
- * E-mail:
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Ma R, Huang H, Bai Y, Luo H, Fan Y, Yao B. Insight into the cold adaptation and hemicellulose utilization of Cladosporium neopsychrotolerans from genome analysis and biochemical characterization. Sci Rep 2018; 8:6075. [PMID: 29666397 PMCID: PMC5904165 DOI: 10.1038/s41598-018-24443-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2017] [Accepted: 03/20/2018] [Indexed: 11/30/2022] Open
Abstract
The occurrence of Cladosporium in cold ecosystems has been evidenced long before, and most of the knowledge about nutrient utilization of this genus is sporadic. An alpine soil isolate C. neopsychrotolerans SL-16, showing great cold tolerance and significant lignocellulose-degrading capability, was sequenced to form a 35.9 Mb genome that contains 13,456 predicted genes. Functional annotation on predicted genes revealed a wide array of proteins involved in the transport and metabolism of carbohydrate, protein and lipid. Large numbers of transmembrane proteins (967) and CAZymes (571) were identified, and those related to hemicellulose degradation was the most abundant. To undermine the hemicellulose (xyaln as the main component) utilization mechanism of SL-16, the mRNA levels of 23 xylanolytic enzymes were quantified, and representatives of three glycoside hydrolase families were functionally characterized. The enzymes showed similar neutral, cold active and thermolabile properties and synergistic action on xylan degradation (the synergy degree up to 15.32). Kinetic analysis and sequence and structure comparison with mesophilic and thermophilic homologues indicated that these cold-active enzymes employed different cold adaptation strategies to function well in cold environment. These similar and complementary advantages in cold adaptation and catalysis might explain the high efficiency of lignocellulose conversion observed in SL-16 under low temperatures.
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Affiliation(s)
- Rui Ma
- Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
- Biotechnology Institute, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Huoqing Huang
- Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yingguo Bai
- Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Huiying Luo
- Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yunliu Fan
- Biotechnology Institute, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Bin Yao
- Key Laboratory for Feed Biotechnology of the Ministry of Agriculture, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
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Response surface methodology optimization of partitioning of xylanase form Aspergillus Niger by metal affinity polymer-salt aqueous two-phase systems. J Chromatogr B Analyt Technol Biomed Life Sci 2017; 1063:1-10. [DOI: 10.1016/j.jchromb.2017.08.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2017] [Revised: 06/23/2017] [Accepted: 08/07/2017] [Indexed: 11/21/2022]
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12
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Nawawi MH, Mohamad R, Tahir PM, Saad WZ. Extracellular Xylanopectinolytic Enzymes by Bacillus subtilis ADI1 from EFB's Compost. INTERNATIONAL SCHOLARLY RESEARCH NOTICES 2017; 2017:7831954. [PMID: 28523288 PMCID: PMC5421085 DOI: 10.1155/2017/7831954] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Accepted: 03/28/2017] [Indexed: 11/24/2022]
Abstract
Microbial xylanase and pectinase are two extremely valuable enzymes, which have captivated much attention. This can be seen from the increased demand for these enzymes by many industrial sectors. This study investigates the isolation and screening of extracellular xylanopectinolytic enzymes-producing bacteria in a submerged fermentation (SmF). Samples are collected from the compost of empty fruit bunch (EFB) at Biocompost Pilot Plant, located at Biorefinery Plant, Universiti Putra Malaysia. From the experiment, out of 20 isolates, 11 isolates show xylanase or/and pectinase activity, and only one isolate (EFB-11) shows the concurrent activities of xylanase and pectinase. These activities are selected for enzyme production under submerged fermentation (quantitative screening). At the 72nd hour of incubation, xylanase and pectinase show the highest production, which ranges about 42.33 U/mL and 62.17 U/mL (with low amount of cellulase present), supplemented with 2% (w/v) of rice bran as carbon source at incubation temperature level, which is 30°C. Meanwhile, the pH of media is shifted to 8.42, which indicates that EFB-11 isolate is alkalotolerant bacteria and identified as Bacillus subtilis ADI1. This strain proves to have potential in agroindustrial bioconversion and has a promising ability to scale up to an industrial scale.
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Affiliation(s)
- Muhammad Hariadi Nawawi
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia
| | - Rosfarizan Mohamad
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia
| | - Paridah Md. Tahir
- Institute of Tropical Forestry and Forest Products, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia
| | - Wan Zuhainis Saad
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia
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13
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Siddiquee S, Shafawati SN, Naher L. Effective composting of empty fruit bunches using potential Trichoderma strains. ACTA ACUST UNITED AC 2016; 13:1-7. [PMID: 28352555 PMCID: PMC5361072 DOI: 10.1016/j.btre.2016.11.001] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Revised: 11/02/2016] [Accepted: 11/28/2016] [Indexed: 12/01/2022]
Abstract
Biocompost is not only a good biofertilizer but also a good biocontrol agent against pant pathogenic fungi. Best solution for acidic soils. Balance the biological flora in soil. High C:N value.
Oil palm fibres are easy to degrade, eco-friendly in nature and once composted, they can be categorized under nutrient-enriched biocompost. Biocompost is not only a good biofertilizer but also a good biocontrol agent against soil-borne pathogens. In this research, experimental works on the composting of empty fruit bunches (EFB) from the oil palm industry were conducted using two potential Trichoderma strains. Analysis of pH initially found the soils to be slightly acidic. However, after composting, the soils were found to be alkaline. Trichoderma propagules increased by 72% in the soils compared to other fungi. Soil electrical conductivity was found to be 50.40 μS/cm for compost A, 42.10 μS/cm for compost B and 40.11 μS/cm for the control. The highest C:N ratio was obtained for compost A at 3.33, followed by compost B at 2.79, and then the control at 1.55. The highest percentages of nitrogen (N), phosphorus (P), and potassium (K) were found in compost A (0.91:2.13:6.68), which was followed by compost B (0.46:0.83:5.85) and then the control (0.32:0.26:5.76). Thus, the biocomposting of oil palm fibres shows great potential for enhancing soil micronutrient, plant growth performance, and crop yield production.
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Affiliation(s)
- Shafiquzzaman Siddiquee
- Biotechnology Research Institute, Universiti Malaysia Sabah, Jln UMS, 88400 Kota Kinabalu, Sabah, Malaysia
| | - Saili Nur Shafawati
- Biotechnology Research Institute, Universiti Malaysia Sabah, Jln UMS, 88400 Kota Kinabalu, Sabah, Malaysia
| | - Laila Naher
- Faculty of Agro Based Industry, Universiti Malaysia Kelantan, 17600 Jeli, Kelantan, Malaysia
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Production of xylooligosaccharides from corncobs using ultrasound-assisted enzymatic hydrolysis. Food Sci Biotechnol 2015. [DOI: 10.1007/s10068-015-0276-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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15
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Silva L, Terrasan CRF, Carmona EC. Purification and characterization of xylanases from Trichoderma inhamatum. ELECTRON J BIOTECHN 2015. [DOI: 10.1016/j.ejbt.2015.06.001] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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16
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El-Gindy AA, Saad RR, Fawzi EM. Purification of β-xylosidase from Aspergillus tamarii using ground oats and a possible application on the fermented hydrolysate by Pichia stipitis. ANN MICROBIOL 2014. [DOI: 10.1007/s13213-014-0940-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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17
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Bakalova N, Petrova S, Benadova R, Kolev D. Isolation of Xylanase Preparations for Biotechnological Applications fromAspergillus NigerA3. BIOTECHNOL BIOTEC EQ 2014. [DOI: 10.1080/13102818.1995.10818841] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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18
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Cellulase production and oil palm empty fruit bunch saccharification by a new isolate of Trichoderma koningii D-64. Process Biochem 2012. [DOI: 10.1016/j.procbio.2012.07.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Lee DS, Lee KH, Jung S, Jo EJ, Han KH, Bae HJ. Synergistic effects of 2A-mediated polyproteins on the production of lignocellulose degradation enzymes in tobacco plants. JOURNAL OF EXPERIMENTAL BOTANY 2012; 63:4797-810. [PMID: 22798663 PMCID: PMC3427999 DOI: 10.1093/jxb/ers159] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Cost-effective bioethanol production requires a supply of various low-cost enzymes that can hydrolyse lignocellulosic materials consisting of multiple polymers. Because plant-based enzyme expression systems offer low-cost and large-scale production, this study simultaneously expressed β-glucosidase (BglB), xylanase (XylII), exoglucanase (E3), and endoglucanase (Cel5A) in tobacco plants, which were individually fused with chloroplast-targeting transit peptides and linked via the 2A self-cleaving oligopeptideex from foot-and-mouth disease virus (FMDV) as follows: [RsBglB-2A-RaCel5A], [RsXylII-2A-RaCel5A], and [RsE3-2A-RaCel5A]. The enzymes were targeted to chloroplasts in tobacco cells and their activities were confirmed. Similarly to the results of a transient assay using Arabidopsis thaliana protoplasts, when XylII was placed upstream of the 2A sequence, the [RsXylII-2A-RaCel5A] transgenic tobacco plant had a more positive influence on expression of the protein placed downstream. The [RsBglB-2A-RaCel5A] and [RsE3-2A-RaCel5A] transgenic lines displayed higher activities towards carboxylmethylcellulose (CMC) compared to those in the [RsXylII-2A-RaCel5A] transgenic line. This higher activity was attributable to the synergistic effects of the different cellulases used. The [RsBglB-2A-RaCel5A] lines exhibited greater efficiency (35-74% increase) of CMC hydrolysis when the exoglucanase CBHII was added. Among the various exoglucanases, E3 showed higher activity with the crude extract of the [RsBglB-2A-RaCel5A] transgenic line. Transgenic expression of 2A-mediated multiple enzymes induced synergistic effects and led to more efficient hydrolysis of lignocellulosic materials for bioethanol production.
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Affiliation(s)
- Dae-Seok Lee
- Bio-energy Research Institute, Chonnam National UniversityGwangju 500–757, Republic of Korea
- Department of Forest Products and Technology (Bk21 Program), Chonnam National UniversityGwangju 500–757, Republic of Korea
| | - Kwang-Ho Lee
- Bio-energy Research Institute, Chonnam National UniversityGwangju 500–757, Republic of Korea
| | - Sera Jung
- Department of Forest Products and Technology (Bk21 Program), Chonnam National UniversityGwangju 500–757, Republic of Korea
| | - Eun-Jin Jo
- Bio-energy Research Institute, Chonnam National UniversityGwangju 500–757, Republic of Korea
| | - Kyung-Hwan Han
- Department of Plant Molecular Biology, Michigan State UniversityUSA
| | - Hyeun-Jong Bae
- Bio-energy Research Institute, Chonnam National UniversityGwangju 500–757, Republic of Korea
- Department of Forest Products and Technology (Bk21 Program), Chonnam National UniversityGwangju 500–757, Republic of Korea
- Department of Bioenergy Science and Technology, Chonnam National UniversityGwangju
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Cloning and constitutive expression of His-tagged xylanase GH 11 from Penicillium occitanis Pol6 in Pichia pastoris X33: Purification and characterization. Protein Expr Purif 2012; 83:8-14. [DOI: 10.1016/j.pep.2012.02.012] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2012] [Revised: 02/18/2012] [Accepted: 02/20/2012] [Indexed: 11/18/2022]
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21
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Deesukon W, Nishimura Y, Sakamoto T, Sukhumsirichart W. Purification, Characterization of GH11 Endo-β-1,4-xylanase from Thermotolerant Streptomyces sp. SWU10 and Overexpression in Pichia pastoris KM71H. Mol Biotechnol 2012; 54:37-46. [DOI: 10.1007/s12033-012-9541-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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22
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Khandeparker R, Verma P, Deobagkar D. A novel halotolerant xylanase from marine isolate Bacillus subtilis cho40: gene cloning and sequencing. N Biotechnol 2011; 28:814-21. [DOI: 10.1016/j.nbt.2011.08.001] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2011] [Revised: 07/08/2011] [Accepted: 08/12/2011] [Indexed: 10/17/2022]
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23
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Lafond M, Tauzin A, Desseaux V, Bonnin E, Ajandouz EH, Giardina T. GH10 xylanase D from Penicillium funiculosum: biochemical studies and xylooligosaccharide production. Microb Cell Fact 2011; 10:20. [PMID: 21466666 PMCID: PMC3083334 DOI: 10.1186/1475-2859-10-20] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2010] [Accepted: 04/05/2011] [Indexed: 11/20/2022] Open
Abstract
Background The filamentous fungus Penicillium funiculosum produces a range of glycoside hydrolases (GH). The XynD gene, encoding the sole P. funiculosum GH10 xylanase described so far, was cloned into the pPICZαA vector and expressed in methylotrophe yeast Pichia pastoris, in order to compare the results obtained with the P. funiculosum GH11 xylanases data. Results High level expression of recombinant XynD was obtained with a secretion of around 60 mg.L-1. The protein was purified to homogeneity using one purification step. The apparent size on SDS-PAGE was around 64 kDa and was 46 kDa by mass spectrometry thus higher than the expected molecular mass of 41 kDa. The recombinant protein was N- and O-glycosylated, as demonstrated using glycoprotein staining and deglycosylation reactions, which explained the discrepancy in molecular mass. Enzyme-catalysed hydrolysis of low viscosity arabinoxylan (LVAX) was maximal at pH 5.0 with Km(app) and kcat/Km(app) of 3.7 ± 0.2 (mg.mL-1) and 132 (s-1mg-1.mL), respectively. The activity of XynD was optimal at 80°C and the recombinant enzyme has shown an interesting high thermal stability at 70°C for at least 180 min without loss of activity. The enzyme had an endo-mode of action on xylan forming mainly xylobiose and short-chain xylooligosaccharides (XOS). The initial rate data from the hydrolysis of short XOS indicated that the catalytic efficiency increased slightly with increasing their chain length with a small difference of the XynD catalytic efficiency against the different XOS. Conclusion Because of its attractive properties XynD might be considered for biotechnological applications. Moreover, XOS hydrolysis suggested that XynD possess four catalytic subsites with a high energy of interaction with the substrate and a fifth subsite with a small energy of interaction, according to the GH10 xylanase literature data.
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Affiliation(s)
- Mickael Lafond
- Université Paul Cézanne, Faculté des Sciences et Techniques Saint-Jérôme, 13397 Marseille Cedex 20, France
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Fu XY, Zhao W, Xiong AS, Tian YS, Peng RH. High expression of recombinant Streptomyces sp. S38 xylanase in Pichia pastoris by codon optimization and analysis of its biochemical properties. Mol Biol Rep 2010; 38:4991-7. [PMID: 21161396 DOI: 10.1007/s11033-010-0644-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2010] [Accepted: 12/03/2010] [Indexed: 11/28/2022]
Abstract
In recent years, the biotechnological use of xylanases has grown remarkably. To efficiently produce xylanase for food processing and other industry, a codon-optimized recombinant xylanase gene from Streptomyces sp. S38 was synthesized and extracellularly expressed in Pichia pastoris under the control of AOX1 promoter. SDS-PAGE and activity assay demonstrated that the molecular mass of the recombinant xylanase was estimated to be 25 kDa, the optimum pH and optimum temperature were 5.5 and 50°C, respectively. In shake flask culture, the specific activity of the xylanase activity was 5098.28 U/mg. The K ( m ) and V ( max ) values of recombinant xylanase were 11.0 mg/ml and 10000 μmol min(-1) mg(-1), respectively. In the presence of metal ions such as Ca(2+), Cu(2+), Cr(3+) and K(+), the activity of the enzyme increased. However, strong inhibition of the enzyme activity was observed in the presence of Hg(2+). This is the first report on the expression properties of a recombinant xylanase gene from the Streptomyces sp. S38 using Pichia pastoris. The attractive biochemical properties of the recombinant xylanase suggest that it may be a useful candidate for variety of commercial applications.
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Affiliation(s)
- Xiao-Yan Fu
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, 2901 Beidi Rd, Shanghai 201106, China
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Optimization of the Trichoderma reesei endo-1,4-beta-xylanase production by recombinant Pichia pastoris. Biochem Eng J 2010. [DOI: 10.1016/j.bej.2010.06.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Functional characterisation of a recombinant xylanase fromPichia pastorisand effect of the enzyme on nutrient digestibility in weaned pigs. Br J Nutr 2010; 103:1507-13. [DOI: 10.1017/s0007114509993333] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Thexyn2gene of a filamentous mesophilic fungus,Trichoderma reesei, coding xylanase 2 (Xyn2) was previously expressed inPichia pastoris. In the present study, the recombinant Xyn2 was prepared from a 15 litre fermenter, and subsequently characterised. It has been confirmed to have a molecular mass of 21 kDa, an optimal pH of 6·0 and an optimal temperature of 60°C. When tested using oat-spelt xylan, it showed aKmand catalytic rate constant (kcat) of 1·1 mg/ml and 512·4/s, respectively. Analysis of the products from oat-spelt xylan degradation confirmed that the enzyme was an endoxylanase with xylotriose and xylobiose as the main degradation products. The unprocessed Xyn2 was supplemented to a xylan-containing diet to determine its influences on performance and nutrient digestibilities by weaned pigs. Results showed that the average body-weight gain increased 16·9 % when piglets received Xyn2 at a concentration of 500 U/kg diet. There also was a positive (0·05 < P < 0·10) effect on the digestibility values of crude protein, ash, Ca and acid-detergent fibre with Xyn2 supplementation. The potential benefits of Xyn2 in the nutrition of weaned pigs should make it an alternative applicant for industrial xylanase production.
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Jun H, Bing Y, Keying Z, Daiwen C. Functional characterization of a recombinant thermostable xylanase from Pichia pastoris: A hybrid enzyme being suitable for xylooligosaccharides production. Biochem Eng J 2009. [DOI: 10.1016/j.bej.2009.08.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Knob A, Terrasan CRF, Carmona EC. β-Xylosidases from filamentous fungi: an overview. World J Microbiol Biotechnol 2009. [DOI: 10.1007/s11274-009-0190-4] [Citation(s) in RCA: 133] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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He J, Yu B, Zhang K, Ding X, Chen D. Expression of endo-1, 4-beta-xylanase from Trichoderma reesei in Pichia pastoris and functional characterization of the produced enzyme. BMC Biotechnol 2009; 9:56. [PMID: 19527524 PMCID: PMC2702311 DOI: 10.1186/1472-6750-9-56] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2008] [Accepted: 06/16/2009] [Indexed: 11/11/2022] Open
Abstract
Background In recent years, xylanases have attracted considerable research interest because of their potential in various industrial applications. The yeast Pichia pastoris can neither utilize nor degrade xylan, but it possesses many attributes that render it an attractive host for the expression and production of industrial enzymes. Results The Xyn2 gene, which encodes the main Trichoderma reesei Rut C-30 endo-β-1, 4-xylanase was cloned into the pPICZαA vector and expressed in Pichia pastoris. The selected P. pastoris strains produced as 4,350 nkat/ml β-xylanase under the control of the methanol inducible alcohol oxidase 1 (AOX1) promoter. The secreted recombinant Xyn2 was estimated by SDS-PAGE to be 21 kDa. The activity of the recombinant Xyn2 was highest at 60°C and it was active over a broad range of pH (3.0–8.0) with maximal activity at pH 6.0. The enzyme was quite stable at 50°C and retained more than 94% of its activity after 30 mins incubation at this temperature. Using Birchwood xylan, the determined apparent Km and kcat values were 2.1 mg/ml and 219.2 S-1, respectively. The enzyme was highly specific towards xylan and analysis of xylan hydrolysis products confirmed as expected that the enzyme functions as endo-xylanase with xylotriose as the main hydrolysis products. The produced xylanase was practically free of cellulolytic activity. Conclusion The P. pastoris expression system allows a high level expression of xylanases. Xylanase was the main protein species in the culture supernatant, and the functional tests indicated that even the non-purified enzyme shows highly specific xylanase activity that is free of cellulolytic side acitivities. Therefore, P pastoris is a very useful expression system when the goal is highly specific and large scale production of glycosyl hydrolases.
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Affiliation(s)
- Jun He
- Institute of Animal Nutrition, Sichuan Agricultural University, Ya'an, Sichuan 625014, PR China.
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Fukuda H, Kondo A, Tamalampudi S. Bioenergy: Sustainable fuels from biomass by yeast and fungal whole-cell biocatalysts. Biochem Eng J 2009. [DOI: 10.1016/j.bej.2008.11.016] [Citation(s) in RCA: 95] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Carapito R, Carapito C, Jeltsch JM, Phalip V. Efficient hydrolysis of hemicellulose by a Fusarium graminearum xylanase blend produced at high levels in Escherichia coli. BIORESOURCE TECHNOLOGY 2009; 100:845-850. [PMID: 18707875 DOI: 10.1016/j.biortech.2008.07.006] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2008] [Revised: 07/01/2008] [Accepted: 07/02/2008] [Indexed: 05/26/2023]
Abstract
A Fusarium graminearum-based enzyme blend for the efficient hydrolysis of hemicellulose, a crucial step for competitive bioethanol production, is described. The heretofore-uncharacterized endo-1,4-beta-xylanase (XylD), 1,4-beta-xylosidase (XyloA), and bifunctional xylosidase/arabinofuranosidase (Xylo/ArabA) were produced at high levels in Escherichia coli (10-38 mg/l). They displayed compatible pH and temperature-dependences, allowing their utilization for simultaneous substrate digestions. Monosaccharide analysis indicated a strong positive synergism between the enzymes during the degradation of oat spelt xylan. Two units of each protein catalyzed the release of 61% and 15% of the total amount of available d-xylose and l-arabinose, respectively, in only 4 h. The detailed cooperative mechanism of the three hydrolases was elucidated by polysaccharide analysis using carbohydrate gel electrophoresis (PACE) and the enzymes were shown to be suitable for the partial hydrolysis of pretreated crude plant biomass.
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Affiliation(s)
- Raphaël Carapito
- U.M.R. 7175, Ecole Supérieure de Biotechnologie de Strasbourg, Université Louis Pasteur-CNRS, Boulevard Sébastien Brandt, BP 10413, 67412 Illkirch-Graffenstaden, France
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Krishna P, Arora A, Reddy MS. An alkaliphilic and xylanolytic strain of actinomycetes Kocuria sp. RM1 isolated from extremely alkaline bauxite residue sites. World J Microbiol Biotechnol 2008. [DOI: 10.1007/s11274-008-9801-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Malburg L, Smith D, Schellhorn H, Forsberg C. Fibrobacter succinogenesS85 has multiple xylanase genes. ACTA ACUST UNITED AC 2008. [DOI: 10.1111/j.1365-2672.1993.tb01596.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Effect of cultivation pH and agitation rate on growth and xylanase production by Aspergillus oryzae in spent sulphite liquor. J Ind Microbiol Biotechnol 2008; 35:587-94. [PMID: 18239946 DOI: 10.1007/s10295-008-0320-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2007] [Accepted: 01/09/2008] [Indexed: 10/22/2022]
Abstract
The effects of cultivation pH and agitation rate on growth and extracellular xylanase production by Aspergillus oryzae NRRL 3485 were investigated in bioreactor cultures using spent sulphite liquor (SSL) and oats spelts xylan as respective carbon substrates. Xylanase production by this fungus was greatly affected by the culture pH, with pH 7.5 resulting in a high extracellular xylanase activity in the SSL-based medium as well as in a complex medium with xylan as carbon substrate. This effect, therefore, was not solely due to growth inhibition at the lower pH values by the acetic acid in the SSL. The xylanase activity in the SSL medium peaked at 199 U ml(-1) at pH 7.5 with a corresponding maximum specific growth rate of 0.39 h(-1). By contrast, the maximum extracellular beta-xylosidase activity pf 0.36 U ml(-1) was recorded at pH 4.0. Three low molecular weight xylanase isozymes were secreted at all pH values within the range of pH 4-8, whereas cellulase activity on both carbon substrates was negligible. Impeller tip velocities within the range of 1.56-3.12 m s(-1) had no marked effect, either on the xylanase activity, or on the maximum volumetric rate of xylanase production. These results also demonstrated that SSL constituted a suitable carbon feedstock as well as inducer for xylanase production in aerobic submerged culture by this strain of A. oryzae.
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Kar S, Mandal A, Mohapatra PKD, Samanta S, Pati BR, Mondal KC. Production of xylanase by immobilized Trichoderma reesei SAF3 in Ca-alginate beads. J Ind Microbiol Biotechnol 2008; 35:245-9. [DOI: 10.1007/s10295-007-0292-7] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2007] [Accepted: 12/10/2007] [Indexed: 11/24/2022]
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Abstract
AbstractMany feed ingredients in use in monogastric diets contain significant quantities of antinutritional factors (ANF) which limit both their feed value and their use. Almost all enzymes currently being used address such factors to varying degrees, allowing for more economic utilization of raw materials. However, animal response to xylanase, β-glucanase and even phytase utilization reported in the literature tends to vary. Factors such as enzyme source, ingredient variety and environment under which the ingredient was grown, stored and processed into animal feed, age of animal, interaction with other dietary ingredients, and health status are shown to affect significantly the response obtained. As a result, the mode of action of xylanases and β-glucanases is still debated due to too much emphasis being placed on interpretation of individual trial results without regard to the interactive factors or the literature dataset as a whole. Better understanding of such factors will improve data interpretation. While results with phytase are not subject to such extreme variation, they are nevertheless inconsistent in the degree to which inorganic phosphorus can be replaced by this enzyme. Greater understanding of the ANF and factors which interact to govern the response to added exogenous enzymes will undoubtedly improve the economic return and confidence in their use. Improved knowledge of ANF structure will result in development of enzymes directed towards far more specific targets, which enhances the likelihood of success and should reduce the overall enzyme usage.
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Foyle T, Jennings L, Mulcahy P. Compositional analysis of lignocellulosic materials: evaluation of methods used for sugar analysis of waste paper and straw. BIORESOURCE TECHNOLOGY 2007; 98:3026-36. [PMID: 17142038 DOI: 10.1016/j.biortech.2006.10.013] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2004] [Revised: 08/28/2006] [Accepted: 10/16/2006] [Indexed: 05/12/2023]
Abstract
To determine the overall efficiency of processes designed to convert lignocellulosic polysaccharides to ethanol, it is first necessary to determine the composition of the lignocellulosic substrates. Three standard methods routinely referenced in the literature for this purpose are monoethanolamine, trifluoroacetic acid and concentrated sulphuric acid-based methods. However, in the course of our studies, the suitability of these standard methods for analysis of wastepaper and wheat straw came into question. This paper details our investigations in this area, together with recommendations for appropriate modifications to one of the standard methods for reproducible and representative lignocellulosic compositional analysis of waste paper and cereal straw.
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Affiliation(s)
- Thomas Foyle
- Department of Science and Health, Institute of Technology Carlow, Kilkenny Road, Carlow, Ireland
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Statistical optimization of alkaline xylanase production from Streptomyces violaceoruber under submerged fermentation using response surface methodology. Indian J Microbiol 2007; 47:144-52. [PMID: 23100657 DOI: 10.1007/s12088-007-0028-4] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2006] [Revised: 04/05/2007] [Accepted: 05/10/2007] [Indexed: 11/27/2022] Open
Abstract
Response surface methodology employing central composite design (CCD) was used to optimize fermentation medium for the production of cellulase-free, alkaline xylanase from Streptomyces violaceoruber under submerged fermentation. The design was employed by selecting wheat bran, peptone, beef extract, incubation time and agitation as model factors. A second-order quadratic model and response surface method showed that the optimum conditions for xylanase production (wheat bran 3.5 % (w/v), peptone 0.8 % (w/v), beef extract 0.8 % (w/v), incubation time 36 h and agitation 250 rpm) results in 3.0-fold improvement in alkaline xylanase production (1500.0 IUml(-1)) as compared to initial level (500.0 IUml(-1)) after 36 h of fermentation, whereas its value predicted by the quadratic model was 1347 IUml(-1). Analysis of variance (ANOVA) showed a high coefficient of determination (R(2)) value of 0.9718, ensuring a satisfactory adjustment of the quadratic model with the experimental data.The economical and cellulase-free nature of xylanase would enhance its applicability in pulp and paper industry.
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Efficient expression and secretion of two co-produced xylanases from Aspergillus niger in Pichia pastoris directed by their native signal peptides and the Saccharomyces cerevisiae α-mating factor. Enzyme Microb Technol 2006. [DOI: 10.1016/j.enzmictec.2005.12.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Chávez R, Bull P, Eyzaguirre J. The xylanolytic enzyme system from the genus Penicillium. J Biotechnol 2006; 123:413-33. [PMID: 16569456 DOI: 10.1016/j.jbiotec.2005.12.036] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2005] [Revised: 12/06/2005] [Accepted: 12/23/2005] [Indexed: 11/22/2022]
Abstract
In nature, there are numerous microorganisms that efficiently degrade xylan, a major component of lignocellulose. In particular, filamentous fungi have demonstrated a great capability for secreting a wide range of xylanases, being the genus Aspergillus and Trichoderma the most extensively studied and reviewed among the xylan-producing fungi. However, an important amount of information about the production and genetics of xylanases from fungi of the genus Penicillium has accumulated in recent years. A great number of Penicillia are active producers of xylanolytic enzymes, and the use of xylanases from these species has acquired growing importance in biotechnological applications. This review summarizes our current knowledge about the properties, genetics, expression and biotechnological potential of xylanases from the genus Penicillium.
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Affiliation(s)
- Renato Chávez
- Unidad de Biotecnología, Instituto de Investigaciones Agropecuarias (INIA), CRI-Carillanca, Temuco, Chile
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Purification and Characterization of a Xylanase Produced by Chaetomium thermophile NIBGE. World J Microbiol Biotechnol 2006. [DOI: 10.1007/s11274-005-5745-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Kabel MA, van der Maarel MJEC, Klip G, Voragen AGJ, Schols HA. Standard assays do not predict the efficiency of commercial cellulase preparations towards plant materials. Biotechnol Bioeng 2005; 93:56-63. [PMID: 16196058 DOI: 10.1002/bit.20685] [Citation(s) in RCA: 89] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Commercial cellulase preparations are potentially effective for processing biomass feedstocks in order to obtain bioethanol. In plant cell walls, cellulose fibrils occur in close association with xylans (monocotyls) or xyloglucans (dicotyls). The enzymatic conversion of cellulose/xylans is a complex process involving the concerted action of exo/endocellulases and cellobiases yielding glucose and xylanases yielding xylooligomers and xylose. An overview of commonly measured cellulase-, cellobiase-, and xylanase-activity, using respectively filter paper, cellobiose, and AZCL-dyed xylan as a substrate of 14 commercially available enzyme preparations from several suppliers is presented. In addition to these standardized tests, the enzyme-efficiency of degrading native substrates was studied. Grass and wheat bran were fractionated into a water unsoluble fraction (WUS), which was free of oligosaccharides and starch. Additionally, cellulose- and xylan-rich fractions were prepared by alkaline extraction of the WUS and were enzymatically digested. Hereby, the capability of cellulose and xylan conversion of the commercial enzyme preparations tested was measured. The results obtained showed that there was a large difference in the performance of the fourteen enzyme samples. Comparing all results, it was concluded that the choice of an enzyme preparation is more dependent on the characteristics of the substrate rather than on standard enzyme-activities measured.
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Affiliation(s)
- Mirjam A Kabel
- Department of Agrotechnology and Food Sciences, Wageningen University, Laboratory of Food Chemistry, Bomenweg 2, The Netherlands
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de Lemos Esteves F, Ruelle V, Lamotte-Brasseur J, Quinting B, Frère JM. Acidophilic adaptation of family 11 endo-beta-1,4-xylanases: modeling and mutational analysis. Protein Sci 2004; 13:1209-18. [PMID: 15096627 PMCID: PMC2286771 DOI: 10.1110/ps.03556104] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Xyl1 from Streptomyces sp. S38 belongs to the low molecular mass family 11 of endo-beta-1,4-xylanases. Its three-dimensional structure has been solved at 2.0 A and its optimum temperature and pH for enzymatic activity are 60 degrees C and 6.0, respectively. Aspergillus kawachii xylanase XynC belongs to the same family but is an acidophilic enzyme with an optimum pH of 2.0. Structural comparison of Xyl1 and XynC showed differences in residues surrounding the two glutamic acid side chains involved in the catalysis that could be responsible for the acidophilic adaptation of XynC. Mutations W20Y, N48D, A134E, and Y193W were introduced by site-directed mutagenesis and combined in multiple mutants. Trp 20 and Tyr 193 are involved in substrate binding. The Y193W mutation inactivated Xyl1 whereas W20Y decreased the optimum pH of Xyl1 to 5.0 and slightly increased its specific activity. The N48D mutation also decreased the optimum pH of Xyl1 by one unit. The A134E substitution did not induce any change, but when combined with N48D, a synergistic effect was observed with a 1.4 unit decrease in the optimum pH. Modeling showed that the orientations of residue 193 and of the fully conserved Arg 131 are different in acidophilic and "alkaline" xylanases whereas the introduced Tyr 20 probably modifies the pKa of the acid-base catalyst via residue Asn 48. Docking of a substrate analog in the catalytic site highlighted striking differences between Xyl1 and XynC in substrate binding. Hydrophobicity calculations showed a correlation between acidophilic adaptation and a decreased hydrophobicity around the two glutamic acid side chains involved in catalysis.
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Affiliation(s)
- Frédéric de Lemos Esteves
- Centre d'Ingénierie des Protéines, Institut de Chimie, B6a, Université de Liège, Sart Tilman, B-4000 Liège, Belgium
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Katahira S, Fujita Y, Mizuike A, Fukuda H, Kondo A. Construction of a xylan-fermenting yeast strain through codisplay of xylanolytic enzymes on the surface of xylose-utilizing Saccharomyces cerevisiae cells. Appl Environ Microbiol 2004; 70:5407-14. [PMID: 15345427 PMCID: PMC520881 DOI: 10.1128/aem.70.9.5407-5414.2004] [Citation(s) in RCA: 131] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Hemicellulose is one of the major forms of biomass in lignocellulose, and its essential component is xylan. We used a cell surface engineering system based on alpha-agglutinin to construct a Saccharomyces cerevisiae yeast strain codisplaying two types of xylan-degrading enzymes, namely, xylanase II (XYNII) from Trichoderma reesei QM9414 and beta-xylosidase (XylA) from Aspergillus oryzae NiaD300, on the cell surface. In a high-performance liquid chromatography analysis, xylose was detected as the main product of the yeast strain codisplaying XYNII and XylA, while xylobiose and xylotriose were detected as the main products of a yeast strain displaying XYNII on the cell surface. These results indicate that xylan is sequentially hydrolyzed to xylose by the codisplayed XYNII and XylA. In a further step toward achieving the simultaneous saccharification and fermentation of xylan, a xylan-utilizing S. cerevisiae strain was constructed by codisplaying XYNII and XylA and introducing genes for xylose utilization, namely, those encoding xylose reductase and xylitol dehydrogenase from Pichia stipitis and xylulokinase from S. cerevisiae. After 62 h of fermentation, 7.1 g of ethanol per liter was directly produced from birchwood xylan, and the yield in terms of grams of ethanol per gram of carbohydrate consumed was 0.30 g/g. These results demonstrate that the direct conversion of xylan to ethanol is accomplished by the xylan-utilizing S. cerevisiae strain.
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Affiliation(s)
- Satoshi Katahira
- Department of Chemical Science and Engineering, Faculty of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe 657-8501, Japan
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Lama L, Calandrelli V, Gambacorta A, Nicolaus B. Purification and characterization of thermostable xylanase and beta-xylosidase by the thermophilic bacterium Bacillus thermantarcticus. Res Microbiol 2004; 155:283-9. [PMID: 15142626 DOI: 10.1016/j.resmic.2004.02.001] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2003] [Accepted: 02/02/2004] [Indexed: 11/25/2022]
Abstract
Bacillus thermantarcticus, a thermophilic bacterium isolated from Antarctic geothermal soil near the crater of Mount Melbourne, produced extracellular xylanase (1,4-beta-D-xylan xylanohydrolase; E.C. 3.2.1.8) and beta-xylosidase (1,4-beta-D-xylan xylohydrolase; E.C. 3.2.1.37). Each extracellular enzyme was separated by gel filtration with Sephacryl S-200 and further purified to homogeneity (119-fold for xylanase and 160-fold for beta-xylosidase). The optimum temperatures were 80 degrees C for xylanase at pH 5.6 and 70 degrees C for beta-xylosidase at pH 6.0. The isoelectric points and molecular masses were 4.8 and 45 kDa for xylanase and 4.2 and 150 kDa for beta-xylosidase, respectively. Xylanase was stable at 60 degrees C for 24 h, whereas it showed a half life at 70 degrees C of 24 h and at 80 degrees C for 50 min. beta-xylosidase activity did not decrease after 1 h at 60 degrees C. Km of xylanase for xylan was 1.6 mg/ml, Km of beta-xylosidase for p-nitrophenyl-beta-D-xylopyranoside was 0.5 mM and for o-nitrophenyl-beta-D-xylopyranoside was 1.28 mM. The action of two enzymes on xylan gave only xylose.
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Affiliation(s)
- Licia Lama
- Istituto di Chimica Biomolecolare, CNR, Via Campi Flegrei, 34, 80078 Pozzuoli, Napoli, Italy
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Den Haan R, Van Zyl W. Enhanced xylan degradation and utilisation by Pichia stipitis overproducing fungal xylanolytic enzymes. Enzyme Microb Technol 2003. [DOI: 10.1016/s0141-0229(03)00183-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Lenartovicz V, de Souza CGM, Moreira FG, Peralta RM. Temperature and carbon source affect the production and secretion of a thermostable β-xylosidase by Aspergillus fumigatus. Process Biochem 2003. [DOI: 10.1016/s0032-9592(02)00261-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Gallardo O, Diaz P, Pastor FIJ. Characterization of a Paenibacillus cell-associated xylanase with high activity on aryl-xylosides: a new subclass of family 10 xylanases. Appl Microbiol Biotechnol 2003; 61:226-33. [PMID: 12698280 DOI: 10.1007/s00253-003-1239-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2002] [Revised: 12/13/2002] [Accepted: 12/16/2002] [Indexed: 11/25/2022]
Abstract
The sequence of gene xynB encoding xylanase B from Paenibacillus sp. BP-23 was determined. It revealed an open reading frame of 999 nucleotides encoding a protein of 38,561 Da. The deduced amino acid sequence of xylanase B shows that the N-terminal region of the enzyme lacks the features of a signal peptide. When the xylan-degrading system of Paenibacillus sp. BP-23 was analysed in zymograms, it revealed that xylanase B was not secreted to the extracellular medium but instead remained cell-associated, even in late stationary-phase cultures. When xynB was expressed in a Bacillus subtilis secreting host, it also remained associated with the cells. Sequence homology analysis showed that xylanase B from Paenibacillus sp. BP-23 belongs to family 10 glycosyl hydrolases, exhibiting a distinctive high homology to six xylanases of this family. The homologous enzymes were also found to be devoid of a signal peptide and seem to constitute, together with xylanase B, a separate group of enzymes. They all have two conserved amino acid regions not found in the other family 10 xylanases, and cluster in a separate group after dendrogram analysis. We propose that these enzymes constitute a new subclass of family 10 xylanases, that are cell-associated, and that hydrolyse the xylooligosaccharides resulting from extracellular xylan hydrolysis. Xylanase B shows similar specific activity on aryl-xylosides and xylans. This can be correlated to some, not yet identified, trait of catalytic activity of the enzyme on plant xylan.
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Affiliation(s)
- O Gallardo
- Department of Microbiology, Faculty of Biology, University of Barcelona, Avinguda Diagonal 645, 08028, Barcelona, Spain
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Anthony T, Chandra Raj K, Rajendran A, Gunasekaran P. High molecular weight cellulase-free xylanase from alkali-tolerant Aspergillus fumigatus AR1. Enzyme Microb Technol 2003. [DOI: 10.1016/s0141-0229(03)00050-4] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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