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Gangurde SS, Korani W, Bajaj P, Wang H, Fountain JC, Agarwal G, Pandey MK, Abbas HK, Chang PK, Holbrook CC, Kemerait RC, Varshney RK, Dutta B, Clevenger JP, Guo B. Aspergillus flavus pangenome (AflaPan) uncovers novel aflatoxin and secondary metabolite associated gene clusters. BMC PLANT BIOLOGY 2024; 24:354. [PMID: 38693487 PMCID: PMC11061970 DOI: 10.1186/s12870-024-04950-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 03/26/2024] [Indexed: 05/03/2024]
Abstract
BACKGROUND Aspergillus flavus is an important agricultural and food safety threat due to its production of carcinogenic aflatoxins. It has high level of genetic diversity that is adapted to various environments. Recently, we reported two reference genomes of A. flavus isolates, AF13 (MAT1-2 and highly aflatoxigenic isolate) and NRRL3357 (MAT1-1 and moderate aflatoxin producer). Where, an insertion of 310 kb in AF13 included an aflatoxin producing gene bZIP transcription factor, named atfC. Observations of significant genomic variants between these isolates of contrasting phenotypes prompted an investigation into variation among other agricultural isolates of A. flavus with the goal of discovering novel genes potentially associated with aflatoxin production regulation. Present study was designed with three main objectives: (1) collection of large number of A. flavus isolates from diverse sources including maize plants and field soils; (2) whole genome sequencing of collected isolates and development of a pangenome; and (3) pangenome-wide association study (Pan-GWAS) to identify novel secondary metabolite cluster genes. RESULTS Pangenome analysis of 346 A. flavus isolates identified a total of 17,855 unique orthologous gene clusters, with mere 41% (7,315) core genes and 59% (10,540) accessory genes indicating accumulation of high genomic diversity during domestication. 5,994 orthologous gene clusters in accessory genome not annotated in either the A. flavus AF13 or NRRL3357 reference genomes. Pan-genome wide association analysis of the genomic variations identified 391 significant associated pan-genes associated with aflatoxin production. Interestingly, most of the significantly associated pan-genes (94%; 369 associations) belonged to accessory genome indicating that genome expansion has resulted in the incorporation of new genes associated with aflatoxin and other secondary metabolites. CONCLUSION In summary, this study provides complete pangenome framework for the species of Aspergillus flavus along with associated genes for pathogen survival and aflatoxin production. The large accessory genome indicated large genome diversity in the species A. flavus, however AflaPan is a closed pangenome represents optimum diversity of species A. flavus. Most importantly, the newly identified aflatoxin producing gene clusters will be a new source for seeking aflatoxin mitigation strategies and needs new attention in research.
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Affiliation(s)
- Sunil S Gangurde
- Department of Plant Pathology, University of Georgia, Tifton, GA, 31793, USA
- Crop Protection and Management Research Unit, USDA-ARS, Tifton, GA, 31793, USA
| | - Walid Korani
- HudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA
| | - Prasad Bajaj
- International Crop Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, Telangana, India
| | - Hui Wang
- Department of Plant Pathology, University of Georgia, Tifton, GA, 31793, USA
| | - Jake C Fountain
- Department of Plant Pathology, University of Georgia, Griffin, GA, 30223, USA
| | - Gaurav Agarwal
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48823, USA
| | - Manish K Pandey
- International Crop Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, Telangana, India.
| | - Hamed K Abbas
- Biological Control of Pests Research Unit, USDA-ARS, Stoneville, MS, 38776, USA
| | - Perng-Kuang Chang
- Southern Regional Research Center, USDA-ARS, New Orleans, LA, 70124, USA
| | - C Corley Holbrook
- Crop Protection and Management Research Unit, USDA-ARS, Tifton, GA, 31793, USA
| | - Robert C Kemerait
- Department of Plant Pathology, University of Georgia, Tifton, GA, 31793, USA
| | - Rajeev K Varshney
- WA State Biotechnology Centre, Centre for Crop and Food innovation, Food Futures Institute, Murdoch University, Murdoch, WA, 6150, Australia
| | - Bhabesh Dutta
- Department of Plant Pathology, University of Georgia, Tifton, GA, 31793, USA
| | - Josh P Clevenger
- HudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA.
| | - Baozhu Guo
- Crop Protection and Management Research Unit, USDA-ARS, Tifton, GA, 31793, USA.
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Martins LM, Bragagnolo N, Calori MA, Iamanaka BT, Alves MC, da Silva JJ, de Godoy IJ, Taniwaki MH. Assessment of early harvest in the prevention of aflatoxins in peanuts during drought stress conditions. Int J Food Microbiol 2023; 405:110336. [PMID: 37541018 DOI: 10.1016/j.ijfoodmicro.2023.110336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 06/14/2023] [Accepted: 07/20/2023] [Indexed: 08/06/2023]
Abstract
The present study aimed to evaluate the effectiveness of early harvest in preventing aflatoxins in peanuts under drought-stress conditions. A field experiment was conducted on the 2018-2019 and 2019-2020 growing seasons in a greenhouse with an irrigation system to induce three drought stress conditions: no stress, mild, and severe stress. In addition, three harvest dates were proposed: two weeks earlier, one week earlier, and ideal harvest time. The mean peanut yield was 2634 kg/ha, considering the two growing seasons, and the drought stress conditions and harvest dates did not influence significantly. The shelling percentage was significantly higher in samples harvested at ideal harvest (77.7 %) than two weeks earlier (76.2 %) and was not influenced by drought stress conditions. Although a low mean percentage of grains with insect damage was identified, this percentage was statistically higher under severe stress (0.4 %) compared to no-stress conditions (0.2 %). The soil contamination ranged from 2.52 × 103 to 1.64 × 104 CFU/g of Aspergillus section Flavi, and the drought stress resulted in significantly higher concentrations in mild and severe stressed samples. A. section Flavi was found to infect all the peanut kernel samples. The drought stress resulted in higher percentages of A. section Flavi infections in samples from mild and severe stress conditions. The harvest date did not influence the soil and peanut kernel occurrence of A. section Flavi. A total of 435 and 796 strains of A. section Flavi were isolated from soil and peanut kernels, respectively. The potential of aflatoxin production by soil isolates was 31, 44, and 25 % for aflatoxin non-producers, aflatoxin B producers, and aflatoxin B and G producers, respectively, while in peanut kernel isolates were 44, 44, and 12 %. Three different A. section Flavi species were identified from peanut kernels: A. flavus, A. parasiticus, and A. pseudocaelatus. The mean aflatoxin concentration in peanut kernels was 42, 316, and 695.5 μg/kg in samples under no stress, mild stress, and severe stress conditions, respectively. Considering the harvest time, the mean aflatoxin concentration was 9.9, 334.3, and 614.2 μg/kg in samples harvested two weeks earlier, one week earlier, and in ideal harvest, respectively. In conclusion, the early harvest proved to be a viable, cost-free alternative for controlling aflatoxin in the peanut pre-harvest, resulting in a safer product and a better quality for sale and economic gain.
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Affiliation(s)
- Ligia Manoel Martins
- Food Technology Institute - ITAL, Campinas, SP, Brazil; Department of Food Science and Nutrition, Faculty of Food Engineering, University of Campinas, Campinas, SP, Brazil.
| | - Neura Bragagnolo
- Department of Food Science and Nutrition, Faculty of Food Engineering, University of Campinas, Campinas, SP, Brazil
| | - Maria Antonia Calori
- Department of Agri-food Industry, Food and Nutrition, Laboratory of molecular biology and mycotoxins, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil
| | | | - Marcelo Corrêa Alves
- IT Technical Section, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil
| | | | - Ignacio José de Godoy
- Center for Analysis and Technological Research of Grain and Fiber Agribusiness, Agronomic Institute of Campinas, Brazil
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Saricaoglu B, Gültekin Subaşı B, Karbancioglu-Guler F, Lorenzo JM, Capanoglu E. Phenolic compounds as natural microbial toxin detoxifying agents. Toxicon 2023; 222:106989. [PMID: 36509264 DOI: 10.1016/j.toxicon.2022.106989] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 11/29/2022] [Accepted: 12/01/2022] [Indexed: 12/13/2022]
Abstract
Despite the abundance of promising studies, developments, and improvements about the elimination of microbial toxins from food matrices, they are still considered as one of the major food safety problems due to the lack of their complete avoidance even today. Every year, many crops and foodstuffs have to be discarded due to unconstrained contamination and/or production of microbial toxins. Furthermore, the difficulty for the detection of toxin presence and determination of its level in foods may lead to acute or chronic health problems in many individuals. On the other hand, phenolic compounds might be considered as microbial toxin detoxification agents because of their inhibition effect on the toxin synthesis of microorganisms or exhibiting protective effects against varying damaging mechanisms caused by toxins. In this study, the effect of phenolic compounds on the synthesis of bacterial toxins and mycotoxins is comprehensively reviewed. The potential curing effect of phenolic compounds against toxin-induced damages has also been discussed. Consequently, phenolic compounds are indicated as promising, and considerable natural preservatives against toxin damages and their detoxification potentials are pronounced.
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Affiliation(s)
- Beyza Saricaoglu
- Department of Food Engineering, Faculty of Chemical and Metallurgical Engineering, Istanbul Technical University, 34469, Maslak, Istanbul, Turkey
| | - Büşra Gültekin Subaşı
- Hafik Kamer Ornek Vocational School, Sivas Cumhuriyet University, 58140, Sivas, Turkey
| | - Funda Karbancioglu-Guler
- Department of Food Engineering, Faculty of Chemical and Metallurgical Engineering, Istanbul Technical University, 34469, Maslak, Istanbul, Turkey
| | - Jose Manuel Lorenzo
- Centro Tecnológico de La Carne de Galicia, Parque Tecnológico de Galicia, Avd. Galicia nº 4, San Cibrao das Viñas, 32900 Ourense, Spain; Universidade de Vigo, Área de Tecnoloxía dos Alimentos, Facultade de Ciencias, 32004 Ourense, Spain
| | - Esra Capanoglu
- Department of Food Engineering, Faculty of Chemical and Metallurgical Engineering, Istanbul Technical University, 34469, Maslak, Istanbul, Turkey.
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Yuan C, Li C, Zhao X, Yan C, Wang J, Mou Y, Sun Q, Shan S. Genome-Wide Identification and Characterization of HSP90-RAR1-SGT1-Complex Members From Arachis Genomes and Their Responses to Biotic and Abiotic Stresses. Front Genet 2021; 12:689669. [PMID: 34512718 PMCID: PMC8430224 DOI: 10.3389/fgene.2021.689669] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 08/05/2021] [Indexed: 11/13/2022] Open
Abstract
The molecular chaperone complex HSP90-RAR1-SGT1 (HRS) plays important roles in both biotic and abiotic stress responses in plants. A previous study showed that wild peanut Arachis diogoi SGT1 (AdSGT1) could enhance disease resistance in transgenic tobacco and peanut. However, no systematic analysis of the HRS complex in Arachis has been conducted to date. In this study, a comprehensive analysis of the HRS complex were performed in Arachis. Nineteen HSP90, two RAR1 and six SGT1 genes were identified from the allotetraploid peanut Arachis hypogaea, a number close to the sum of those from the two wild diploid peanut species Arachis duranensis and Arachis ipaensis. According to phylogenetic and chromosomal location analyses, thirteen orthologous gene pairs from Arachis were identified, all of which except AhHSP90-A8, AhHSP90-B9, AdHSP90-9, and AiHSP90-9 were localized on the syntenic locus, and they shared similar exon-intron structures, conserved motifs and expression patterns. Phylogenetic analysis showed that HSP90 and RAR1 from dicot and monocot plants diverged into different clusters throughout their evolution. Chromosomal location analysis indicated that AdSGT1 (the orthologous gene of AhSGT1-B3 in this study) might provide resistance to leaf late spot disease dependent on the orthologous genes of AhHSP90-B10 and AhRAR1-B in the wild peanut A. diogoi. Several HRS genes exhibited tissue-specific expression patterns, which may reflect the sites where they perform functions. By exploring published RNA-seq data, we found that several HSP90 genes play major roles in both biotic and abiotic stress responses, especially salt and drought responses. Autoactivation assays showed that AhSGT1-B1 could not be used as bait for yeast two-hybrid (Y2H) library screening. AhRAR1 and AhSGT1 could strongly interact with each other and interact with AhHSP90-B8. The present study represents the first systematic analysis of HRS complex genes in Arachis and provides valuable information for functional analyses of HRS complex genes. This study also offers potential stress-resistant genes for peanut improvement.
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Affiliation(s)
- Cuiling Yuan
- Shandong Peanut Research Institute, Qingdao, China
| | - Chunjuan Li
- Shandong Peanut Research Institute, Qingdao, China
| | - Xiaobo Zhao
- Shandong Peanut Research Institute, Qingdao, China
| | - Caixia Yan
- Shandong Peanut Research Institute, Qingdao, China
| | - Juan Wang
- Shandong Peanut Research Institute, Qingdao, China
| | - Yifei Mou
- Shandong Peanut Research Institute, Qingdao, China
| | - Quanxi Sun
- Shandong Peanut Research Institute, Qingdao, China
| | - Shihua Shan
- Shandong Peanut Research Institute, Qingdao, China
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5
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Matumba L, Namaumbo S, Ngoma T, Meleke N, De Boevre M, Logrieco AF, De Saeger S. Five keys to prevention and control of mycotoxins in grains: A proposal. GLOBAL FOOD SECURITY 2021. [DOI: 10.1016/j.gfs.2021.100562] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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6
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Zhao C, Li T, Zhao Y, Zhang B, Li A, Zhao S, Hou L, Xia H, Fan S, Qiu J, Li P, Zhang Y, Guo B, Wang X. Integrated small RNA and mRNA expression profiles reveal miRNAs and their target genes in response to Aspergillus flavus growth in peanut seeds. BMC PLANT BIOLOGY 2020; 20:215. [PMID: 32404101 PMCID: PMC7222326 DOI: 10.1186/s12870-020-02426-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Accepted: 04/30/2020] [Indexed: 05/05/2023]
Abstract
BACKGROUND MicroRNAs are important gene expression regulators in plants immune system. Aspergillus flavus is the most common causal agents of aflatoxin contamination in peanuts, but information on the function of miRNA in peanut-A. flavus interaction is lacking. In this study, the resistant cultivar (GT-C20) and susceptible cultivar (Tifrunner) were used to investigate regulatory roles of miRNAs in response to A. flavus growth. RESULTS A total of 30 miRNAs, 447 genes and 21 potential miRNA/mRNA pairs were differentially expressed significantly when treated with A. flavus. A total of 62 miRNAs, 451 genes and 44 potential miRNA/mRNA pairs exhibited differential expression profiles between two peanut varieties. Gene Ontology (GO) analysis showed that metabolic-process related GO terms were enriched. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses further supported the GO results, in which many enriched pathways were related with biosynthesis and metabolism, such as biosynthesis of secondary metabolites and metabolic pathways. Correlation analysis of small RNA, transcriptome and degradome indicated that miR156/SPL pairs might regulate the accumulation of flavonoids in resistant and susceptible genotypes. The miR482/2118 family might regulate NBS-LRR gene which had the higher expression level in resistant genotype. These results provided useful information for further understanding the roles of miR156/157/SPL and miR482/2118/NBS-LRR pairs. CONCLUSIONS Integration analysis of the transcriptome, miRNAome and degradome of resistant and susceptible peanut varieties were performed in this study. The knowledge gained will help to understand the roles of miRNAs of peanut in response to A. flavus.
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Affiliation(s)
- Chuanzhi Zhao
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
- College of Life Sciences, Shandong Normal University, Jinan, 250014 PR China
| | - Tingting Li
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
- Rizhao Experimental High School od Shandong, Rizhao, 276826 PR China
| | - Yuhan Zhao
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
- College of Life Sciences, Shandong Normal University, Jinan, 250014 PR China
| | - Baohong Zhang
- Department of Biology, East Carolina University, Greenville, NC USA
| | - Aiqin Li
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
| | - Shuzhen Zhao
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
| | - Lei Hou
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
| | - Han Xia
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
| | - Shoujin Fan
- College of Life Sciences, Shandong Normal University, Jinan, 250014 PR China
| | - Jingjing Qiu
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
- College of Life Sciences, Shandong Normal University, Jinan, 250014 PR China
| | - Pengcheng Li
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
| | - Ye Zhang
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
| | - Baozhu Guo
- Crop Protection and Management Research Unit, USDA-Agricultural Research Service, Tifton, GA 31793 USA
- Department of Plant Pathology, University of Georgia, Tifton, GA USA
| | - Xingjun Wang
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100 PR China
- College of Life Sciences, Shandong Normal University, Jinan, 250014 PR China
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7
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Tumukunde E, Ma G, Li D, Yuan J, Qin L, Wang S. Current research and prevention of aflatoxins in China. WORLD MYCOTOXIN J 2020. [DOI: 10.3920/wmj2019.2503] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Since their discovery in the 1960s, aflatoxins were found to have a considerable impact on the health of humans and animals as well as the country’s economy and international trade. Aflatoxins are often found in nuts, cereals and animal feeds, which has a significant danger to the food industry. Over the years, several steps have been undertaken worldwide to minimise their contamination in crops and their exposure to humans and animals. China is one of the largest exporters and importers of food and animal feed. As a result, many studies have been carried out in China related to aflatoxins, including their distribution, pollution, detection methods, monitoring, testing and managing. Chinese scientists studied aflatoxins in microbiological, toxicological, ecological effects as well as policies relating to their controlling. China has thus put into practice a number of strategies aiming at the prevention and control of aflatoxins in order to protect consumers and ensure a safe trade of food and feed, and the status and enlargement of these strategies are very important and useful for many consumers and stakeholders in China. Therefore, this article aims at the detriment assessments, regulations, distribution, detection methods, prevention and control of aflatoxins in China. It equally provides useful information about the recent safety management systems in place to fight the contamination of aflatoxins in food and feed in China.
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Affiliation(s)
- E. Tumukunde
- Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China P.R
| | - G. Ma
- Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China P.R
| | - D. Li
- Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China P.R
| | - J. Yuan
- Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China P.R
| | - L. Qin
- Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China P.R
| | - S. Wang
- Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China P.R
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8
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Abuagela MO, Iqdiam BM, Mostafa H, Marshall SM, Yagiz Y, Marshall MR, Gu L, Sarnoski P. Combined effects of citric acid and pulsed light treatments to degrade B-aflatoxins in peanut. FOOD AND BIOPRODUCTS PROCESSING 2019. [DOI: 10.1016/j.fbp.2019.08.011] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Mwakinyali SE, Ming Z, Xie H, Zhang Q, Li P. Investigation and Characterization of Myroides odoratimimus Strain 3J2MO Aflatoxin B 1 Degradation. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:4595-4602. [PMID: 30907589 DOI: 10.1021/acs.jafc.8b06810] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Aflatoxin B1 (AFB1), is a type I carcinogen that is one of the strongest naturally occurring aflatoxins and can be injurious to humans and livestock upon ingestion, inhalation, or skin contact, with carcinogenic and mutagenic effects. It causes significant hazardous effects to the food- and animal-production industries. We found a bacterial strain, 3J2MO, that degraded AFB1 well, and here we tested and characterized its AFB1-degradation ability. The strain degraded about 93.82% of the AFB1 after incubation for 48 h in Luria-Bertani (LB) medium at 37 °C with a final concentration of 100 ppb and an inoculation quantity of 1 × 107 cfu/mL. High-performance liquid chromatography-fluorescence detection (HPLC-FLD) was used to determine AFB1 amounts. The maximum degradation rates were 89.23% at pH 8.5; 55.78% at an inoculation quantity of 1 × 108 cfu/mL; and 71.50 and 71.21% at 34 and 37 °C, respectively. Treatment with sucrose and soluble starch as carbon sources and beef extract and ammonium acetate as nitrogen sources stimulated the degradation rate. Mg2+ and Ca2+ ions were activators for AFB1 degradation; however, Mn2+, Fe3+, Zn2+, and Cu2+ were strong inhibitors. This bacterial strain has potential in bioremediation and the detoxification of aflatoxin contamination for biocontrol strategies in both agricultural products and food-industry matrices.
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Affiliation(s)
- Silivano E Mwakinyali
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
- National Food Reserve Agency (NFRA) , Ministry of Agriculture , P.O Box 1050, Dodoma 41000 , United Republic of Tanzania
| | - Zhang Ming
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
| | - Huali Xie
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
| | - Qi Zhang
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
| | - Peiwu Li
- Oil Crops Research Institute , Chinese Academy of Agricultural Sciences , Wuhan 430062 , PR China
- Key Laboratory of Biology and Genetic Improvement of Oil Crops , Ministry of Agriculture , Wuhan 430062 , PR China
- Laboratory of Quality & Safety Risk Assessment for Oilseeds Products, Wuhan , Ministry of Agriculture , Wuhan 430062 , PR China
- Key Laboratory of Detection for Mycotoxins , Ministry of Agriculture , Wuhan 430062 , PR China
- Quality Inspection and Test Center for Oilseeds Products , Ministry of Agriculture , Wuhan 430062 , PR China
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10
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Zhao X, Li C, Wan S, Zhang T, Yan C, Shan S. Transcriptomic analysis and discovery of genes in the response of Arachis hypogaea to drought stress. Mol Biol Rep 2018; 45:119-131. [PMID: 29330721 DOI: 10.1007/s11033-018-4145-4] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 01/05/2018] [Indexed: 12/17/2022]
Abstract
The peanut (Arachis hypogaea) is an important crop species that is threatened by drought stress. The genome sequences of peanut, which was officially released in 2016, may help explain the molecular mechanisms that underlie drought tolerance in this species. We report here a gene expression profiling of A. hypogaea to gain a global view of its drought resistance. Using whole-transcriptome sequencing, we analysed differential gene expression in response to drought stress in the drought-resistant peanut cultivar J11. Pooled samples obtained at 6, 12, 18, 24, and 48 h were compared with control samples at 0 h. In total, 51,554 genes were found, including 49,289 known genes and 2265 unknown genes. We identified 224 differentially expressed transcription factors, 296,335 SNPs and 28,391 InDELs. In addition, we detected significant differences in the gene expression profiles of the treatment and control groups. After comparing the two groups, 4648 genes were identified. An in-depth analysis of the data revealed that a large number of genes were associated with drought stress, including transcription factors and genes involved in photosynthesis-antenna proteins, carbon metabolism and the citrate cycle. The results of this study provide insights into the diverse mechanisms that underlie the successful establishment of drought resistance in the peanut, thereby facilitating the identification of important genes in the peanut related to drought management. Transcriptome analysis based on RNA-Seq is a powerful approach for gene discovery and molecular marker development for this species.
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Affiliation(s)
- Xiaobo Zhao
- Laboratory of Genetics and Breeding, Shandong Peanut Research Institute, Qingdao, 266100, Shandong Province, People's Republic of China
| | - Chunjuan Li
- Laboratory of Genetics and Breeding, Shandong Peanut Research Institute, Qingdao, 266100, Shandong Province, People's Republic of China
| | - Shubo Wan
- Shandong Academy of Agricultural Sciences, Jinan, 250100, Shandong Province, People's Republic of China
| | - Tingting Zhang
- Laboratory of Genetics and Breeding, Shandong Peanut Research Institute, Qingdao, 266100, Shandong Province, People's Republic of China
| | - Caixia Yan
- Laboratory of Genetics and Breeding, Shandong Peanut Research Institute, Qingdao, 266100, Shandong Province, People's Republic of China
| | - Shihua Shan
- Laboratory of Genetics and Breeding, Shandong Peanut Research Institute, Qingdao, 266100, Shandong Province, People's Republic of China.
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Power IL, Dang PM, Sobolev VS, Orner VA, Powell JL, Lamb MC, Arias RS. Characterization of small RNA populations in non-transgenic and aflatoxin-reducing-transformed peanut. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 257:106-125. [PMID: 28224915 DOI: 10.1016/j.plantsci.2016.12.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Revised: 12/01/2016] [Accepted: 12/29/2016] [Indexed: 06/06/2023]
Abstract
Aflatoxin contamination is a major constraint in food production worldwide. In peanut (Arachis hypogaea L.), these toxic and carcinogenic aflatoxins are mainly produced by Aspergillus flavus Link and A. parasiticus Speare. The use of RNA interference (RNAi) is a promising method to reduce or prevent the accumulation of aflatoxin in peanut seed. In this study, we performed high-throughput sequencing of small RNA populations in a control line and in two transformed peanut lines that expressed an inverted repeat targeting five genes involved in the aflatoxin-biosynthesis pathway and that showed up to 100% less aflatoxin B1 than the controls. The objective was to determine the putative involvement of the small RNA populations in aflatoxin reduction. In total, 41 known microRNA (miRNA) families and many novel miRNAs were identified. Among those, 89 known and 10 novel miRNAs were differentially expressed in the transformed lines. We furthermore found two small interfering RNAs derived from the inverted repeat, and 39 sRNAs that mapped without mismatches to the genome of A. flavus and were present only in the transformed lines. This information will increase our understanding of the effectiveness of RNAi and enable the possible improvement of the RNAi technology for the control of aflatoxins.
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Affiliation(s)
- Imana L Power
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA.
| | - Phat M Dang
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA
| | - Victor S Sobolev
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA
| | - Valerie A Orner
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA
| | - Joseph L Powell
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA
| | - Marshall C Lamb
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA
| | - Renee S Arias
- United States Department of Agriculture, Agricultural Research Service, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S. E., Dawson, GA 39842, USA
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Resistance to Aspergillus flavus in maize and peanut: Molecular biology, breeding, environmental stress, and future perspectives. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.cj.2015.02.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Bhatnagar-Mathur P, Sunkara S, Bhatnagar-Panwar M, Waliyar F, Sharma KK. Biotechnological advances for combating Aspergillus flavus and aflatoxin contamination in crops. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 234:119-132. [PMID: 25804815 DOI: 10.1016/j.plantsci.2015.02.009] [Citation(s) in RCA: 96] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 02/17/2015] [Accepted: 02/18/2015] [Indexed: 06/04/2023]
Abstract
Aflatoxins are toxic, carcinogenic, mutagenic, teratogenic and immunosuppressive byproducts of Aspergillus spp. that contaminate a wide range of crops such as maize, peanut, and cotton. Aflatoxin not only affects crop production but renders the produce unfit for consumption and harmful to human and livestock health, with stringent threshold limits of acceptability. In many crops, breeding for resistance is not a reliable option because of the limited availability of genotypes with durable resistance to Aspergillus. Understanding the fungal/crop/environment interactions involved in aflatoxin contamination is therefore essential in designing measures for its prevention and control. For a sustainable solution to aflatoxin contamination, research must be focused on identifying and improving knowledge of host-plant resistance factors to aflatoxin accumulation. Current advances in genetic transformation, proteomics, RNAi technology, and marker-assisted selection offer great potential in minimizing pre-harvest aflatoxin contamination in cultivated crop species. Moreover, developing effective phenotyping strategies for transgenic as well as precision breeding of resistance genes into commercial varieties is critical. While appropriate storage practices can generally minimize post-harvest aflatoxin contamination in crops, the use of biotechnology to interrupt the probability of pre-harvest infection and contamination has the potential to provide sustainable solution.
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Affiliation(s)
- Pooja Bhatnagar-Mathur
- Genetic Transformation Laboratory, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502324, Telangana, India.
| | - Sowmini Sunkara
- Genetic Transformation Laboratory, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502324, Telangana, India
| | - Madhurima Bhatnagar-Panwar
- Genetic Transformation Laboratory, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502324, Telangana, India
| | - Farid Waliyar
- Genetic Transformation Laboratory, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502324, Telangana, India
| | - Kiran Kumar Sharma
- Genetic Transformation Laboratory, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru 502324, Telangana, India
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Matumba L, Van Poucke C, Njumbe Ediage E, De Saeger S. Keeping mycotoxins away from the food: Does the existence of regulations have any impact in Africa? Crit Rev Food Sci Nutr 2015; 57:1584-1592. [DOI: 10.1080/10408398.2014.993021] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Canavar Ö, Kaynak MA. Prevention of pre-harvest aflatoxin production and the effect of different harvest times on peanut (Arachis hypogaea L.) fatty acids. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2013; 30:1807-18. [PMID: 23889477 DOI: 10.1080/19440049.2013.818720] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
The aim of this study was to investigate the relationship between aflatoxin and fatty acids and to determine the optimum harvest time to avoid pre-harvest aflatoxin formation. It was established that harvest time had statistically significant effects on the levels of saturated fatty acids: myristic acid (C14:0), palmitic acid (C16:0), heptadecanoic acid (C17:0), stearic acid (C18:0), arachidic acid (C20:0), behenic acid (C22:0), lignoceric acid (C24:0), monounsaturated fatty acids; palmitoleic acid (C16:1), heptadecenoic acid (C17:1), oleic acid (C18:1) and gadoleic acid (C20:1); and on polyunsaturated fatty acids: linoleic acid (C18:2) and linolenic acid (C18:3). By delaying the harvest time, the ratio of saturated fatty acids decreased and unsaturated fatty acids increased. It was shown that the longer harvesting was delayed, the greater the quantity of oleic acid that was produced. Before harvest time, if the soil moisture was 5% or higher, aflatoxin was produced by fungi. It was found that the weather conditions of the region were suitable for aflatoxin production. Soil moisture appears to be more important than soil temperature for aflatoxin formation. The production of aflatoxin was not observed in the first and second harvests, both of which are at early harvest times. It was found that aflatoxin B1 during harvest time was the most significant of the four toxins. The third harvest time, which is the most widely used, was observed to have significant problems due to aflatoxin formation. Therefore, it is suggested as a result of this study that the harvest of peanuts must be done considering seed yield before the middle of September to avoid aflatoxin formation at harvest time.
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Affiliation(s)
- Öner Canavar
- a Department of Crop Science , Faculty of Agriculture, Adnan Menderes University , Aydın , Turkey
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Ozonolysis efficiency and safety evaluation of aflatoxin B1 in peanuts. Food Chem Toxicol 2013; 55:519-25. [DOI: 10.1016/j.fct.2013.01.038] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Revised: 01/08/2013] [Accepted: 01/25/2013] [Indexed: 11/21/2022]
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Karuna R, Rao BS. Lack of micronuclei induction by fumonisin B1 mycotoxin in BALB/c mice. Mycotoxin Res 2012; 29:9-15. [DOI: 10.1007/s12550-012-0149-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Revised: 10/08/2012] [Accepted: 10/09/2012] [Indexed: 10/27/2022]
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Gene expression profiling and identification of resistance genes to Aspergillus flavus infection in peanut through EST and microarray strategies. Toxins (Basel) 2011; 3:737-53. [PMID: 22069737 PMCID: PMC3202856 DOI: 10.3390/toxins3070737] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2011] [Revised: 06/09/2011] [Accepted: 06/14/2011] [Indexed: 11/16/2022] Open
Abstract
Aspergillus flavus and A. parasiticus infect peanut seeds and produce aflatoxins, which are associated with various diseases in domestic animals and humans throughout the world. The most cost-effective strategy to minimize aflatoxin contamination involves the development of peanut cultivars that are resistant to fungal infection and/or aflatoxin production. To identify peanut Aspergillus-interactive and peanut Aspergillus-resistance genes, we carried out a large scale peanut Expressed Sequence Tag (EST) project which we used to construct a peanut glass slide oligonucleotide microarray. The fabricated microarray represents over 40% of the protein coding genes in the peanut genome. For expression profiling, resistant and susceptible peanut cultivars were infected with a mixture of Aspergillusflavus and parasiticus spores. The subsequent microarray analysis identified 62 genes in resistant cultivars that were up-expressed in response to Aspergillus infection. In addition, we identified 22 putative Aspergillus-resistance genes that were constitutively up-expressed in the resistant cultivar in comparison to the susceptible cultivar. Some of these genes were homologous to peanut, corn, and soybean genes that were previously shown to confer resistance to fungal infection. This study is a first step towards a comprehensive genome-scale platform for developing Aspergillus-resistant peanut cultivars through targeted marker-assisted breeding and genetic engineering.
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