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Zhang Z, Qu Y, Ma F, Lv Q, Zhu X, Guo G, Li M, Yang W, Que B, Zhang Y, He T, Qiu X, Deng H, Song J, Liu Q, Wang B, Ke Y, Bai S, Li J, Lv L, Li R, Wang K, Li H, Feng H, Huang J, Yang W, Zhou Y, Song CP. Integrating high-throughput phenotyping and genome-wide association studies for enhanced drought resistance and yield prediction in wheat. THE NEW PHYTOLOGIST 2024. [PMID: 38992951 DOI: 10.1111/nph.19942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Accepted: 04/19/2024] [Indexed: 07/13/2024]
Abstract
Drought, especially terminal drought, severely limits wheat growth and yield. Understanding the complex mechanisms behind the drought response in wheat is essential for developing drought-resistant varieties. This study aimed to dissect the genetic architecture and high-yielding wheat ideotypes under terminal drought. An automated high-throughput phenotyping platform was used to examine 28 392 image-based digital traits (i-traits) under different drought conditions during the flowering stage of a natural wheat population. Of the i-traits examined, 17 073 were identified as drought-related. A genome-wide association study (GWAS) identified 5320 drought-related significant single-nucleotide polymorphisms (SNPs) and 27 SNP clusters. A notable hotspot region controlling wheat drought tolerance was discovered, in which TaPP2C6 was shown to be an important negative regulator of the drought response. The tapp2c6 knockout lines exhibited enhanced drought resistance without a yield penalty. A haplotype analysis revealed a favored allele of TaPP2C6 that was significantly correlated with drought resistance, affirming its potential value in wheat breeding programs. We developed an advanced prediction model for wheat yield and drought resistance using 24 i-traits analyzed by machine learning. In summary, this study provides comprehensive insights into the high-yielding ideotype and an approach for the rapid breeding of drought-resistant wheat.
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Affiliation(s)
- Zhen Zhang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Yunfeng Qu
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Feifei Ma
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Qian Lv
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Xiaojing Zhu
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Guanghui Guo
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Mengmeng Li
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Wei Yang
- School of Computer and Information Engineering, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Beibei Que
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Yun Zhang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Tiantian He
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Xiaolong Qiu
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Hui Deng
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Jingyan Song
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Qian Liu
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Baoqi Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Youlong Ke
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Shenglong Bai
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Jingyao Li
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Linlin Lv
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Ranzhe Li
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Kai Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Hao Li
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
| | - Hui Feng
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Jinling Huang
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
- Department of Biology, East Carolina University, Greenville, NC, 27858, USA
| | - Wanneng Yang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yun Zhou
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
- Academy for Advanced Interdisciplinary Studies, Henan University, Kaifeng, 475004, China
| | - Chun-Peng Song
- State Key Laboratory of Crop Stress Adaptation and Improvement, College of Agriculture, School of Life Sciences, Henan University, Jinming Ave 1, Kaifeng, 475004, China
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Ahmad A, Aslam Z, Abbas RN, Bellitürk K, Hussain S, Hussain S, Ahmad M, Zulfiqar U, Moussa IM, Elshikh MS. Enhancing Wheat Crop Resilience to Drought Stress through Cellulolytic Microbe-Enriched Cow Dung Vermicompost. ACS OMEGA 2024; 9:2123-2133. [PMID: 38250403 PMCID: PMC10795136 DOI: 10.1021/acsomega.3c04402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 12/07/2023] [Accepted: 12/20/2023] [Indexed: 01/23/2024]
Abstract
BACKGROUND Wheat, an important cereal crop, is commonly cultivated in arid and semiarid areas, and therefore, it often experiences water deficit conditions. The consequences of induced stress on wheat can be mitigated through vermicompost amendments. To address drought stress on wheat seedlings, a pot experiment was conducted in the wire-house in which two contrasting wheat cultivars, Faisalabad-08 (drought-tolerant) and Galaxy-13 (drought-sensitive), were exposed to three water level conditions: well-watered [D0, 70% of field capacity (FC)], moderate drought (D1, 45% FC), and severe drought (D2, 30% FC). Four rates of vermicompost, derived from cow dung enriched with cellulolytic microbes, were applied (VT0, control; VT1, 4 t ha-1; VT2, 6 t ha-1; and VT3, 8 t ha-1) to the experiment. Data on various physiological, biochemical, and enzymatic antioxidants were recorded. RESULTS Our results demonstrated that the drought treatments significantly reduced nutrient accumulation, chlorophyll and SPAD values, and carotenoid content in both cultivars where the maximum reduction was recorded for severe drought stress. Nonetheless, the application of vermicompost significantly improved these traits, and statistically maximum chlorophyll contents, SPAD value, and total carotenoid contents were observed for VT1 in both cultivars under drought treatments. While the lowest chlorophyll and carotenoid contents were recorded for untreated replicated pots. Among the cultivars, Faisalabad-08 exhibited greater resistance to drought, as evidenced by higher values of the aforementioned traits compared to Galaxy-13. Soil-applied vermicompost also showed a positive influence on antioxidant enzyme activities in both wheat cultivars grown under well-watered as well as water-scarce conditions. CONCLUSIONS The findings of this study revealed that drought conditions substantially decreased the enzymatic antioxidants and physiological and biochemical attributes of the wheat crop. However, soil-applied vermicompost, particularly at an optimum rate, had a positive impact on the wheat seedlings under drought conditions. Moving forward, exploring the potential of utilizing cellulolytic microbe-enriched cow dung vermicompost stands as a promising avenue to mitigate the detrimental effects of water stress on wheat. Further research in this direction could offer substantial insights into enhancing wheat resilience and productivity under water stress conditions.
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Affiliation(s)
- Ali Ahmad
- Department
of Agronomy, University of Agriculture, Faisalabad 38000, Pakistan
| | - Zubair Aslam
- Department
of Agronomy, University of Agriculture, Faisalabad 38000, Pakistan
| | - Rana Nadeem Abbas
- Department
of Agronomy, University of Agriculture, Faisalabad 38000, Pakistan
| | - Korkmaz Bellitürk
- Department
of Soil Science and Plant Nutrition, Faculty of Agriculture, Tekirdağ Namık Kemal University, Süleymanpaşa, Tekirdağ 59030, Turkey
| | - Saddam Hussain
- Department
of Agronomy, University of Agriculture, Faisalabad 38000, Pakistan
| | - Sadam Hussain
- College
of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Muhammad Ahmad
- Department
of Agronomy, University of Agriculture, Faisalabad 38000, Pakistan
| | - Usman Zulfiqar
- Department
of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan
| | - Ihab Mohamed Moussa
- Department
of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Mohamed S. Elshikh
- Department
of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
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Rubab M, Jannat S, Freeg H, Abbas H, Attia KA, Fiaz S, Zahra N, Uzair M, Inam S, Shah AH, Kimiko I, Naeem MK, Khan MR. Evaluation of functional kompetitive allele-specific PCR (KASP) markers for selection of drought-tolerant wheat ( Triticum aestivum) genotypes. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:NULL. [PMID: 37308134 DOI: 10.1071/fp23032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 05/06/2023] [Indexed: 06/14/2023]
Abstract
Wheat (Triticum aestivum ) is a major crop around the globe and different techniques are being used for its productivity enhancement. Germplasm evaluation to improve crop productivity mainly depends on accurate phenotyping and selection of genotypes with a high frequency of superior alleles related to the trait of interest. Therefore, applying functional kompetitive allele-specific PCR (KASP) markers for drought-related genes is essential to characterise the genotypes for developing future climate-resilient wheat crop. In this study, eight functional KASP markers and nine morphological traits were employed to evaluate the 40 wheat genotypes for drought tolerance. Morphological traits showed significant variation (P ≤0.05) among the genotypes, except tiller count (TC), fresh root weight (FRW) and dry root weight (DRW). PCA biplot showed that 63.3% phenotypic variation was explained by the first two PCs under control treatment, while 70.8% variation was explained under drought treatment. It also indicated that root length (RL) and primary root (PR) have considerable variations among the genotypes under both treatments and are positively associated with each other. Hence, the findings of this study suggested that both these traits could be used as a selection criterion to classify the drought-tolerant wheat genotypes. KASP genotyping accompanied by morphological data revealed that genotypes Markaz, Bhakar Star, China 2, Aas and Chakwal-50 performed better under drought stress. These outperforming genotypes could be used as parents in developing drought-tolerant wheat genotypes. Hence, KASP genotyping assay for functional genes or significant haplotypes and phenotypic evaluation are prerequisites for a modern breeding program.
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Affiliation(s)
- Marya Rubab
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan; and Department of Biotechnology, University of Kotli, Kotli, Azad Jammu and Kashmir, Pakistan
| | - Summiya Jannat
- Department of Biotechnology, University of Kotli, Kotli, Azad Jammu and Kashmir, Pakistan
| | - Haytham Freeg
- Rice Biotechnology Lab., Rice Research and Training Center, Field Crops Research Institute, Agricultural Research Center, Kafrelsheikh 33717, Egypt
| | - Hina Abbas
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan
| | - Kotb A Attia
- Department of Biochemistry, College of Science, King Saud University, POX 2455-11451, Riyadh, Saudi Arabia
| | - Sajid Fiaz
- Department of Plant Breeding and Genetics, The University of Haripur, Haripur 22620, Pakistan
| | - Nageen Zahra
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan
| | - Muhammad Uzair
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan
| | - Safeena Inam
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan
| | - Asad Hussain Shah
- Department of Biotechnology, University of Kotli, Kotli, Azad Jammu and Kashmir, Pakistan
| | - Itoh Kimiko
- Institute of Science and Technology, Niigata University, Ikarashi-2, Nishi-ku, Niigata 950-2181, Japan
| | - Muhammad Kashif Naeem
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan
| | - Muhammad Ramzan Khan
- National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Park Road, Islamabad 45500, Pakistan
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Alhammad BA, Zaheer MS, Ali HH, Hameed A, Ghanem KZ, Seleiman MF. Effect of Co-Application of Azospirillum brasilense and Rhizobium pisi on Wheat Performance and Soil Nutrient Status under Deficit and Partial Root Drying Stress. PLANTS (BASEL, SWITZERLAND) 2023; 12:3141. [PMID: 37687389 PMCID: PMC10489886 DOI: 10.3390/plants12173141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 08/15/2023] [Accepted: 08/29/2023] [Indexed: 09/10/2023]
Abstract
Water management techniques are improving at the farm level, but they are not enough to deal with the limited availability of water and increased crop yields. Soil microbes play a vital role in nitrogen fixation, improving soil fertility and enhancing plant growth hormones under drought conditions. Therefore, this study was conducted to investigate the impact of water management combined with Azospirillum brasilense and Rhizobium pisi on wheat crop productivity and soil properties in dry regions. Three water management techniques were compared, normal irrigation as a control (C), deficit irrigation (DI), and partial root drying irrigation (PRD), together with the interaction of plant-growth-promoting rhizobacteria (PGPR). Experiments were conducted with six treatments in total: T1 = C + No PGPR, T2 = C + PGPR, T3 = DI + No PGPR, T4 = DI + PGPR, T5 = PRD + No PGPR, and T6 = PRD + PGPR. The highest grain yield was achieved in the control irrigation treatment using seeds inoculated with rhizobacteria, followed by control treatment without any inoculation, and the lowest was recorded with deficit irrigation without rhizobacteria inoculated in the seeds. However, PRD irrigation resulted in significantly higher plant growth and grain yield than the DI treatment. PGPR inoculation combined with PRD resulted in a 22% and 20% higher number of grains per spike, a 19% and 21% higher grain yield, and a 25% and 22% higher crop growth rate compared to rhizobacteria inoculation combined with the DI system in 2021-22 and 2022-23, respectively. This increase was due to the higher production of growth hormones and higher leaf area index under water-limited conditions. A greater leaf area index leads to a higher chlorophyll content and higher food production for plant growth.
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Affiliation(s)
- Bushra Ahmed Alhammad
- Biology Department, College of Science and Humanity Studies, Prince Sattam Bin Abdulaziz University, P.O. Box 292, Riyadh 11942, Saudi Arabia;
| | - Muhammad Saqlain Zaheer
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan 64200, Pakistan
| | - Hafiz Haider Ali
- Department of Agriculture, Government College University, Lahore 54000, Pakistan;
| | - Akhtar Hameed
- Institute of Plant Protection, MNS University of Agriculture Multan, Multan 61000, Pakistan;
| | - Kholoud Z. Ghanem
- Department of Biological Science, College of Science and Humanities, Shaqra University, Riyadh 11961, Saudi Arabia;
| | - Mahmoud F. Seleiman
- Plant Production Department, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia
- Department of Crop Sciences, Faculty of Agriculture, Menoufia University, Shibin El-Kom 32514, Egypt
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Duvnjak J, Lončarić A, Brkljačić L, Šamec D, Šarčević H, Salopek-Sondi B, Španić V. Morpho-Physiological and Hormonal Response of Winter Wheat Varieties to Drought Stress at Stem Elongation and Anthesis Stages. PLANTS (BASEL, SWITZERLAND) 2023; 12:418. [PMID: 36771504 PMCID: PMC9921141 DOI: 10.3390/plants12030418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/12/2023] [Accepted: 01/13/2023] [Indexed: 06/18/2023]
Abstract
Drought stress can significantly reduce wheat growth and development as well as grain yield. This study investigated morpho-physiological and hormonal (abscisic (ABA) and salicylic (SA) acids) responses of six winter wheat varieties during stem elongation and anthesis stage as well grain yield-related traits were measured after harvest. To examine drought response, plants were exposed to moderate non-lethal drought stress by withholding watering for 45 and 65% of the volumetric soil moisture content (VSMC) for 14 days at separate experiments for each of those two growth stages. During the stem elongation phase, ABA was increased, confirming the stress status of plants, and SA showed a tendency to increase, suggesting their role as stress hormones in the regulation of stress response, such as the increase in the number of leaves and tillers in drought stress conditions, and further keeping turgor pressure and osmotic adjustment in leaves. At the anthesis stage, heavier drought stress resulted in ABA accumulation in flag leaves that generated an integrated response of maturation, where ABA was not positively correlated with any of investigated traits. After harvest, the variety Bubnjar, followed by Pepeljuga and Anđelka, did not significantly decrease the number of grains per ear and 1000 kernel weight (except Anđelka) in drought treatments, thus, declaring them more tolerant to drought. On the other hand, Rujana, Fifi, and particularly Silvija experienced the highest reduction in grain yield-related traits, considering them drought-sensitive varieties.
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Affiliation(s)
- Jurica Duvnjak
- Department for Breeding & Genetics of Small Cereal Crops, Agricultural Institute Osijek, Južno Predgrađe 17, 31000 Osijek, Croatia
| | - Ante Lončarić
- Faculty of Food Technology Osijek, University of J.J. Strossmayer in Osijek, Franje Kuhača 18, 31000 Osijek, Croatia
| | - Lidija Brkljačić
- Ruđer Bošković Institute, Bijenička Cesta 54, 10000 Zagreb, Croatia
| | - Dunja Šamec
- Department of Food Technology, University Center Koprivnica, University North, Trg dr. Žarka Dolinara 1, 48000 Koprivnica, Croatia
| | - Hrvoje Šarčević
- Faculty of Agriculture, University of Zagreb, Svetošimunska Cesta 25, 10000 Zagreb, Croatia
| | | | - Valentina Španić
- Department for Breeding & Genetics of Small Cereal Crops, Agricultural Institute Osijek, Južno Predgrađe 17, 31000 Osijek, Croatia
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Diversity matters in wheat mixtures: A genomic survey of the impact of genetic diversity on the performance of 12 way durum wheat mixtures grown in two contrasted and controlled environments. PLoS One 2022; 17:e0276223. [PMID: 36490260 PMCID: PMC9733896 DOI: 10.1371/journal.pone.0276223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Accepted: 10/04/2022] [Indexed: 12/13/2022] Open
Abstract
In ecology, an increase in genetic diversity within a community in natural ecosystems increases its productivity, while in evolutionary biology, kinship selection predicts that relatedness on social traits improves fitness. Varietal mixtures, where different genotypes are grown together, show contrasting results, especially for grain yield where both positive and negative effects of mixtures have been reported. To understand the effect of diversity on field performance, we grew 96 independent mixtures each composed with 12 durum wheat (Triticum turgidum ssp. durum Thell.) inbred lines, under two contrasting environmental conditions for water availability. Using dense genotyping, we imputed allelic frequencies and a genetic diversity index on more than 96000 loci for each mixture. We then analyzed the effect of genetic diversity on agronomic performance using a genome-wide approach. We explored the stress gradient hypothesis, which proposes that the greater the unfavourable conditions, the more beneficial the effect of diversity on mixture performance. We found that diversity on average had a negative effect on yield and its components while it was beneficial on grain weight. There was little support for the stress gradient theory. We discuss how to use genomic data to improve the assembly of varietal mixtures.
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Nergui K, Jin S, Zhao L, Liu X, Xu T, Wei J, Chen X, Yang Y, Li H, Liu Y, Wang Y, Liu J, Zhao T, Li Y, Tang L, Sun R, Wang X, Liu Y, Deng X. Comparative analysis of physiological, agronomic and transcriptional responses to drought stress in wheat local varieties from Mongolia and Northern China. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 170:23-35. [PMID: 34844115 DOI: 10.1016/j.plaphy.2021.11.026] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 11/10/2021] [Accepted: 11/14/2021] [Indexed: 06/13/2023]
Abstract
Drought is one of the major abiotic stresses that threaten wheat production worldwide, especially in the Mongolian Plateau and adjacent regions. This study aims to find local wheat varieties with high yields and drought resistance at various developmental stages based on agronomic traits and drought resistance indices analysis and explore the underlining molecular mechanisms by transcriptome analysis. Our results revealed that drought stress started at the seedling stage has a greater impact on crop yields. Four types of drought responses were found among the tested varieties. Type 1 and type 2 show low tolerance to drought stress despite high or low yield in control condition, type 3 exhibits high yield under control condition but dropped significantly after drought, and type 4 displays relatively high and stable yields under control and drought conditions. Transcriptome analysis performed with the representative varieties of the four types revealed GO terms and KEGG pathways enriched among drought-triggered differential expressed genes (DEGs). A network containing 18 modules was constructed using weighted gene co-expression analysis (WGCNA). Ten modules were significantly correlated to yield by module-trait correlation, and 3 modules showed Darkhan 144 specific gene expression patterns. C2H2 zinc finger factor-recognized motifs were identified from the promoters of genes in these modules. qRT-PCR confirmed several key DEGs with specific expression patterns and physiological measurements validated the relatively low oxidative damage and high antioxidant capacity in the drought tolerant variety Dankhan 144. These findings provide an important basis for local agriculture and breeding of drought-tolerant high yield wheat varieties.
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Affiliation(s)
- Khandmaa Nergui
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Songsong Jin
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Li Zhao
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Xiaoqiang Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Tao Xu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China; Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510080, China
| | - Jun Wei
- University of Chinese Academy of Sciences, Beijing, 100049, PR China; Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xiuxiu Chen
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Yang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Hui Li
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yuanyuan Wang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jie Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Tong Zhao
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Li
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Ling Tang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Runze Sun
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Xiaohua Wang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Yongxiu Liu
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China; The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xin Deng
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
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Mukarram M, Choudhary S, Kurjak D, Petek A, Khan MMA. Drought: Sensing, signalling, effects and tolerance in higher plants. PHYSIOLOGIA PLANTARUM 2021; 172:1291-1300. [PMID: 33847385 DOI: 10.1111/ppl.13423] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 03/21/2021] [Accepted: 04/09/2021] [Indexed: 05/12/2023]
Abstract
Drought can be considered as a cocktail of multiple stressful conditions that contribute to osmotic and ionic imbalance in plants. Considering that water is vital for plant life, the very survival of the plant becomes questionable during drought conditions. Water deficit affects a wide spectrum of morpho-physiological phenomena restricting overall plant growth, development and productivity. To evade such complications and ameliorate drought-induced effects, plants have a battery of various defence mechanisms. These mechanisms can vary from stomatal adjustments to osmotic adjustments and antioxidant metabolism to ion regulations. In this review, we critically evaluate how drought is perceived and signalled through the whole plant via abscisic acid mediated pathways. Additionally, the impact of drought on photosynthesis, gas exchange variables and reactive oxygen species pathway was also reviewed, along with the reversal of these induced effects through associated morpho-physiological counter mechanisms.
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Affiliation(s)
- Mohammad Mukarram
- Advance Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, India
- Department of Integrated Forest and Landscape Protection, Faculty of Forestry, Technical University in Zvolen, Zvolen, Slovakia
| | - Sadaf Choudhary
- Advance Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Daniel Kurjak
- Department of Integrated Forest and Landscape Protection, Faculty of Forestry, Technical University in Zvolen, Zvolen, Slovakia
| | - Anja Petek
- Department of Integrated Forest and Landscape Protection, Faculty of Forestry, Technical University in Zvolen, Zvolen, Slovakia
| | - M Masroor A Khan
- Advance Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, India
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9
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Beznec A, Faccio P, Miralles DJ, Abeledo LG, Oneto CD, Garibotto MDB, Gonzalez G, Moreyra F, Elizondo M, Ruíz M, Lewi D, Blumwald E, Llorente B, Paleo AD, Bossio E. Stress-induced expression of IPT gene in transgenic wheat reduces grain yield penalty under drought. JOURNAL OF GENETIC ENGINEERING AND BIOTECHNOLOGY 2021; 19:67. [PMID: 33970377 PMCID: PMC8110665 DOI: 10.1186/s43141-021-00171-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 04/19/2021] [Indexed: 11/10/2022]
Abstract
Background The heterologous expression of isopentenyl transferase (IPT) under the transcriptional control of the senescence-associated receptor-like kinase (SARK) promoter delayed cellular senescence and, through it, increased drought tolerance in plants. To evaluate the effect of pSARK::IPT expression in bread wheat, six independent transgenic events were obtained through the biolistic method and evaluated transgene expression, phenology, grain yield and physiological biomass components in plants grown under both drought and well-irrigating conditions. Experiments were performed at different levels: (i) pots and (ii) microplots inside a biosafety greenhouse, as well as under (iii) field conditions. Results Two transgenic events, called TR1 and TR4, outperformed the wild-type control under drought conditions. Transgenic plants showed higher yield under both greenhouse and field conditions, which was positively correlated to grain number (given by more spikes and grains per spike) than wild type. Interestingly, this yield advantage of the transgenic events was observed under both drought and well-watered conditions. Conclusions The results obtained allow us to conclude that the SARK promoter-regulated expression of the IPT gene in bread wheat not only reduced the yield penalty produced by water stress but also led to improved productivity under well-watered conditions. Supplementary Information The online version contains supplementary material available at 10.1186/s43141-021-00171-w.
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Affiliation(s)
- Ailin Beznec
- Instituto de Genética, "Edwald A. Favret", Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
| | - Paula Faccio
- Instituto de Genética, "Edwald A. Favret", Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina
| | - Daniel J Miralles
- Cátedra de Cerealicultura, Facultad de Agronomía de la Universidad de Buenos Aires, Av. San Martín 4453, Buenos Aires, Argentina.,IFEVA, CABA, Buenos Aires, Argentina
| | - Leonor G Abeledo
- Cátedra de Cerealicultura, Facultad de Agronomía de la Universidad de Buenos Aires, Av. San Martín 4453, Buenos Aires, Argentina
| | - Cecilia Decima Oneto
- Laboratorio de Agrobiotecnología, EEA Balcarce, INTA, Ruta 226, Km 73.5, B7620, Balcarce, Argentina.,Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), C1425FQB, Godoy Cruz 2290, CABA, Buenos Aires, Argentina
| | - María de Belén Garibotto
- Instituto de Genética, "Edwald A. Favret", Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.,Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), C1425FQB, Godoy Cruz 2290, CABA, Buenos Aires, Argentina
| | | | | | - Matías Elizondo
- EEA San Juan, INTA, San Juan, Argentina.,Unidad Integrada INTA-UNSJ Dpto. Ing., San Juan, Argentina
| | - Mónica Ruíz
- EEA San Juan, INTA, San Juan, Argentina.,Unidad Integrada INTA-UNSJ Dpto. Ing., San Juan, Argentina
| | - Dalia Lewi
- Instituto de Genética, "Edwald A. Favret", Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina
| | - Eduardo Blumwald
- Department of Plant Sciences, University of California, Davis, USA
| | - Berta Llorente
- Departamento de Ciencias Básicas, Universidad Nacional de Luján, Buenos Aires, Argentina
| | | | - Ezequiel Bossio
- Instituto de Genética, "Edwald A. Favret", Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina
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10
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Khadka K, Earl HJ, Raizada MN, Navabi A. A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. FRONTIERS IN PLANT SCIENCE 2020; 11:715. [PMID: 32582249 PMCID: PMC7286286 DOI: 10.3389/fpls.2020.00715] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 05/06/2020] [Indexed: 05/18/2023]
Abstract
In the past, there have been drought events in different parts of the world, which have negatively influenced the productivity and production of various crops including wheat (Triticum aestivum L.), one of the world's three important cereal crops. Breeding new high yielding drought-tolerant wheat varieties is a research priority specifically in regions where climate change is predicted to result in more drought conditions. Commonly in breeding for drought tolerance, grain yield is the basis for selection, but it is a complex, late-stage trait, affected by many factors aside from drought. A strategy that evaluates genotypes for physiological responses to drought at earlier growth stages may be more targeted to drought and time efficient. Such an approach may be enabled by recent advances in high-throughput phenotyping platforms (HTPPs). In addition, the success of new genomic and molecular approaches rely on the quality of phenotypic data which is utilized to dissect the genetics of complex traits such as drought tolerance. Therefore, the first objective of this review is to describe the growth-stage based physio-morphological traits that could be targeted by breeders to develop drought-tolerant wheat genotypes. The second objective is to describe recent advances in high throughput phenotyping of drought tolerance related physio-morphological traits primarily under field conditions. We discuss how these strategies can be integrated into a comprehensive breeding program to mitigate the impacts of climate change. The review concludes that there is a need for comprehensive high throughput phenotyping of physio-morphological traits that is growth stage-based to improve the efficiency of breeding drought-tolerant wheat.
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Affiliation(s)
- Kamal Khadka
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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11
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Rehman Arif MA, Attaria F, Shokat S, Akram S, Waheed MQ, Arif A, Börner A. Mapping of QTLs Associated with Yield and Yield Related Traits in Durum Wheat ( Triticum durum Desf.) Under Irrigated and Drought Conditions. Int J Mol Sci 2020; 21:ijms21072372. [PMID: 32235556 PMCID: PMC7177892 DOI: 10.3390/ijms21072372] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 03/10/2020] [Accepted: 03/11/2020] [Indexed: 11/16/2022] Open
Abstract
Global durum wheat consumption (Triticum durum Desf.) is ahead of its production. One reason for this is abiotic stress, e.g., drought. Breeding for resistance to drought is complicated by the lack of fast, reproducible screening techniques and the inability to routinely create defined and repeatable water stress conditions. Here, we report the first analysis of dissection of yield and yield-related traits in durum wheat in Pakistan, seeking to elucidate the genetic components of yield and agronomic traits. Analysis of several traits revealed a total of 221 (160 with logarithm of odds (LOD) > 2 ≤ 3 and 61 with LOD > 3) quantitative trait loci (QTLs) distributed on all fourteen durum wheat chromosomes, of which 109 (78 with LOD > 2 ≤ 3 and 31 with LOD > 3) were observed in 2016-17 (S1) and 112 (82 with LOD > 2 ≤ 3 and 30 with LOD > 3) were observed in 2017-18 (S2). Allelic profiles of yield QTLs on chromosome 2A and 7B indicate that allele A of Xgwm895 and allele B of Xbarc276 can enhance the Yd up to 6.16% in control and 5.27% under drought. Moreover, if combined, a yield gain of up to 11% would be possible.
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Affiliation(s)
- Mian Abdur Rehman Arif
- Nuclear Institute for Agriculture and Biology, Jhang Road, Faisalabad, 38000, Pakistan; (F.A.); (S.S.); (S.A.); (M.Q.W.); (A.A.)
- Correspondence:
| | - Fauzia Attaria
- Nuclear Institute for Agriculture and Biology, Jhang Road, Faisalabad, 38000, Pakistan; (F.A.); (S.S.); (S.A.); (M.Q.W.); (A.A.)
| | - Sajid Shokat
- Nuclear Institute for Agriculture and Biology, Jhang Road, Faisalabad, 38000, Pakistan; (F.A.); (S.S.); (S.A.); (M.Q.W.); (A.A.)
- Department of Plant and Environmental Sciences, University of Copenhagen, Højbakkegård Allé 13, DK-2630 Taastrup, Denmark
| | - Saba Akram
- Nuclear Institute for Agriculture and Biology, Jhang Road, Faisalabad, 38000, Pakistan; (F.A.); (S.S.); (S.A.); (M.Q.W.); (A.A.)
| | - Muhammad Qandeel Waheed
- Nuclear Institute for Agriculture and Biology, Jhang Road, Faisalabad, 38000, Pakistan; (F.A.); (S.S.); (S.A.); (M.Q.W.); (A.A.)
| | - Anjuman Arif
- Nuclear Institute for Agriculture and Biology, Jhang Road, Faisalabad, 38000, Pakistan; (F.A.); (S.S.); (S.A.); (M.Q.W.); (A.A.)
| | - Andreas Börner
- Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, Seeland OT, 06466 Gatersleben, Germany;
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12
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Ota M, Tanaka T. Importance of root uptake of 14CO 2 on 14C transfer to plants impacted by below-ground 14CH 4 release. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2019; 201:5-18. [PMID: 30721755 DOI: 10.1016/j.jenvrad.2019.01.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2018] [Revised: 01/24/2019] [Accepted: 01/24/2019] [Indexed: 06/09/2023]
Abstract
14C-labelled methane (14CH4) released from deep underground radioactive waste disposal facilities can be a below-ground source of 14CO2 owing to microbial oxidation of 14CH4 to 14CO2 in soils. Environmental 14C models assume that the transfer of 14CO2 from soil to plant occurs via foliar uptake of 14CO2. Nevertheless, the importance of 14CO2 root uptake is not well understood. In the present study, below-ground transport and oxidation of 14CH4 were modeled and incorporated into an existing land-surface 14CO2 model (SOLVEG-II) to assess the relative importance of root uptake and foliar uptake on 14CO2 transfer from soil to plants. Performance of the model in calculating the below-ground dynamics of 14CH4 was validated by simulating a field experiment of 13CH4 (as a substitute for 14CH4) injection into subsoil in a wheat field in the UK. The proposed model simulation was then applied to 14C transfer in a hypothetical ecosystem impacted by continuous 14CH4 input from the water table (bottom of 1-m thick soil), which simulated continuous release of 14CH4 from a deep underground radioactive waste disposal facility. The contrast between the results obtained from the model calculation that assumed different distributions of roots (rooting depths of 11 cm, or 97 cm) and methane oxidation (characterized by e-folding depths of 5 cm, 20 cm, or 80 cm) in the soil provided insight into the relative importance of root uptake and foliar uptake pathways. In the shallowly rooted ecosystem with rooting depth of 11 cm, foliar uptake of 14CO2 was significant, accounting for 80% of the 14C accumulation (as organic 14C) in the plant (leaf compartment). By contrast, in a deeply rooted ecosystem (rooting depth of 97 cm), where the root penetrated to depths close to the water-table, more than half (63%) the 14C accumulated in the plant was transferred via the root uptake pathway. We found that 14CO2 root uptake (thus 14C accumulation in the plant) in this ecosystem depended on the distribution of methane oxidation in the soil; all 14C accumulated in the plant was transferred by the root uptake pathway when methane oxidation occurred at considerable depths (e-folding depths of 20 cm, or 80 cm) in the soil. The high level of 14CO2 root uptake was ascribed to the oxidation of added 14CH4 (i.e., production of 14CO2) in the deep part of the soil and the subsequent high level of root uptake of the deep soil-water containing 14CO2. These results indicate that 14CO2 root uptake contributes significantly to 14CO2 transfer to plants if 14CH4 oxidation occurs at great depths and roots penetrate deeply into the soil. It is recommended that current environmental 14C models must be refined to consider the importance of the root uptake pathway to ensure that dose estimates of 14CH4 release from deep underground waste disposal facilities are accurate.
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Affiliation(s)
- Masakazu Ota
- Research Group for Environmental Science, Japan Atomic Energy Agency, Tokai, Ibaraki, 319-1195, Japan.
| | - Taku Tanaka
- Group P78, Laboratoire National d'Hydraulique et Environnement, Électricité de France, 6 Quai Watier, Chatou, 78401, France
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13
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Radiation interception, extinction coefficient and use efficiency of wheat crop at various irrigation and nitrogen levels in a semi-arid location. ACTA ACUST UNITED AC 2018; 23:416-425. [PMID: 30416202 PMCID: PMC6208775 DOI: 10.1007/s40502-018-0400-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2016] [Accepted: 09/17/2018] [Indexed: 11/05/2022]
Abstract
Field experiments were conducted to study the effect of irrigation and nitrogen levels on radiation use efficiency (RUE), radiation extinction coefficient (κ) and temporal variation of leaf area index (LAI) and fraction intercepted photosynthetically active radiation (fIPAR). The LAI of wheat increased with increase in irrigation and nitrogen levels. The fIPAR also followed trend similar to LAI. The LAI and fIPAR showed logarithmic relationship with R2 value of 0.92 and 0.93 for the years 2013–2014 and 2014–2015, respectively. The κ value varied between 0.41 and 0.78 and was significantly affected by nitrogen levels but was not influenced by irrigation levels. The grain and above ground biomass (AGB) yields of wheat were not affected significantly by irrigation levels. However, application of 160 kg N ha−1 (N160) registered higher grain (12–33%) and AGB (22–25%) yeilds as compared to that with application of 40 kg N ha−1 (N40). Similar to AGB, the total intercepted photosynthetically active radiation (TIPAR) was not affected by irrigation levels but N160 treatment registered 9–20% higher TIPAR compared to N40 treatment. The linear relationship between TIPAR and AGB revealed that 83–86% variation in AGB yield of wheat can be explained by TIfIPAR. The RUE of wheat under three irrigations (I3) was 6 and 18% higher (P < 0.05) than the five (I5) and two (I2) irrigation treatments, respectively for the year 2013–2014. However, there was no significant effect of irrigation on RUE of wheat in the year 2014–2015. N160 treatment registered 5–13% higher RUE than the N40 treatment. Thus wheat may be grown with three irrigations (CRI, flowering and grain filling) and 160 kg N ha−1 for higher RUE without significant reduction in AGB of wheat compared to five irrigation levels in semi-arid location of Delhi region.
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14
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Nasrallah A, Baghdadi N, Mhawej M, Faour G, Darwish T, Belhouchette H, Darwich S. A Novel Approach for Mapping Wheat Areas Using High Resolution Sentinel-2 Images. SENSORS (BASEL, SWITZERLAND) 2018; 18:E2089. [PMID: 29966267 PMCID: PMC6069430 DOI: 10.3390/s18072089] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/03/2018] [Revised: 06/21/2018] [Accepted: 06/26/2018] [Indexed: 11/30/2022]
Abstract
Global wheat production reached 754.8 million tons in 2017, according to the FAO database. While wheat is considered as a staple food for many populations across the globe, mapping wheat could be an effective tool to achieve the SDG2 sustainable development goal—End Hunger and Secure Food Security. In Lebanon, this crop is supported financially, and sometimes technically, by the Lebanese government. However, there is a lack of statistical databases, at both national and regional scales, as well as critical information much needed in the subsidy and compensation system. In this context, this study proposes an innovative approach, named Simple and Effective Wheat Mapping Approach (SEWMA), to map the winter wheat areas grown in the Bekaa plain, the primary wheat production area in Lebanon, in the years of 2016 and 2017. The proposed methodology is a tree-like approach relying on the Normalized Difference Vegetation Index (NDVI) values of four-month period that coincides with several phenological stages of wheat (i.e., tillering, stem extension, heading, flowering and ripening). The usage of the freely available Sentinel-2 imageries, with a high spatial (10 m) and temporal (5 days) resolutions, was necessary, particularly due to the small sized and overlapped plots encountered in the study area. Concerning the wheat areas, results show that there was a decrease from 11,063 ± 1309 ha in 2016 to 7605 ± 1184 in 2017. When SEWMA was applied using 2016 ground truth data, the overall accuracy reached 87.0% on 2017 data, whereas, when implemented using 2017 ground truth data, the overall accuracy was 82.6% on 2016 data. The novelty resides in executing early classification output (up to six weeks before harvest) as well as distinguishing wheat from other winter cereal crops with similar NDVI yearly profiles (i.e., barley and triticale). SEWMA offers a simple, yet effective and budget-saving approach providing early-season classification information, very crucial to decision support systems and the Lebanese government concerning, but not limited to, food production, trade, management and agricultural financial support.
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Affiliation(s)
- Ali Nasrallah
- IRSTEA, University of Montpellier, TETIS, 34090 Montpellier, France.
- National Center for Remote Sensing, National Council for Scientific Research (CNRS), Riad al Soloh, Beirut 1107 2260, Lebanon.
- CIHEAM-IAMM, UMR-System, 34090 Montpellier, France.
| | - Nicolas Baghdadi
- IRSTEA, University of Montpellier, TETIS, 34090 Montpellier, France.
| | - Mario Mhawej
- National Center for Remote Sensing, National Council for Scientific Research (CNRS), Riad al Soloh, Beirut 1107 2260, Lebanon.
| | - Ghaleb Faour
- National Center for Remote Sensing, National Council for Scientific Research (CNRS), Riad al Soloh, Beirut 1107 2260, Lebanon.
| | - Talal Darwish
- National Center for Remote Sensing, National Council for Scientific Research (CNRS), Riad al Soloh, Beirut 1107 2260, Lebanon.
| | | | - Salem Darwich
- Faculty of Agriculture, Lebanese University, Beirut 99, Lebanon.
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15
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Saeed U, Wajid SA, Khaliq T, Zahir ZA. Optimizing irrigation and nitrogen for wheat through empirical modeling under semi-arid environment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:11663-11676. [PMID: 28324258 DOI: 10.1007/s11356-017-8733-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 03/01/2017] [Indexed: 06/06/2023]
Abstract
Nitrogen fertilizer availability to plants is strongly linked with water availability. Excessive or insufficient use of nitrogen can cause reduction in grain yield of wheat and environmental issues. The per capita per annum water availability in Pakistan has reduced to less than 1000 m3 and is expected to reach 800 m3 during 2025. Irrigating crops with 3 or more than 3 in. of depth without measuring volume of water is not a feasible option anymore. Water productivity and economic return of grain yield can be improved by efficient management of water and nitrogen fertilizer. A study was conducted at post-graduate agricultural research station, University of Agriculture Faisalabad, during 2012-2013 and 2013-2014 to optimize volume of water per irrigation and nitrogen application. Split plot design with three replications was used to conduct experiment; four irrigation levels (I300 = 300 mm, I240 = 240 mm, I180 = 180 mm, I120 = 120 mm for whole growing season at critical growth stages) and four nitrogen levels (N60 = 60 kg ha-1, N120 = 120 kg ha-1, N180 = 180 kg ha-1, and N240 = 240 kg ha-1) were randomized as main and sub-plot factors, respectively. The recorded data on grain yield was used to develop empirical regression models. The results based on quadratic equations and economic analysis showed 164, 162, 158, and 107 kg ha-1 nitrogen as economic optimum with I300, I240, I180, and I120 mm water, respectively, during 2012-2013. During 2013-2014, quadratic equations and economic analysis showed 165, 162, 161, and 117 kg ha-1 nitrogen as economic optimum with I300, I240, I180, and I120 mm water, respectively. The optimum irrigation level was obtained by fitting economic optimum nitrogen as function of total water. Equations predicted 253 mm as optimum irrigation water for whole growing season during 2012-2013 and 256 mm water as optimum for 2013-2014. The results also revealed that reducing irrigation from I300 to I240 mm during 2012-2013 and 2013-2014 did not reduce crop yield significantly (P < 0.01). The excessive nitrogen application ranged from 31.2 to 55.4% at N180 and N240 kg ha-1 for different levels of irrigation. It is concluded from study that irrigation and nitrogen relationship can be used for efficient management of irrigation and nitrogen and to reduce nitrogen losses. The empirical equations developed in this study can help farmers of semi-arid environment to calculate optimum level of irrigation and nitrogen for maximum economic return from wheat.
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Affiliation(s)
- Umer Saeed
- Agro-Climatology Lab, Department of Agronomy, University of Agriculture-Faisalabad, Faisalabad, Pakistan.
| | - Syed Aftab Wajid
- Agro-Climatology Lab, Department of Agronomy, University of Agriculture-Faisalabad, Faisalabad, Pakistan
| | - Tasneem Khaliq
- Agro-Climatology Lab, Department of Agronomy, University of Agriculture-Faisalabad, Faisalabad, Pakistan
| | - Zahir Ahmad Zahir
- Institute of Soil and Environmental Sciences, University of Agriculture-Faisalabad, Faisalabad, Pakistan
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16
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Kariuki LW, Masinde P, Githiri S, Onyango AN. Effect of water stress on growth of three linseed (Linum usitatissimum L.) varieties. SPRINGERPLUS 2016; 5:759. [PMID: 27386244 PMCID: PMC4912539 DOI: 10.1186/s40064-016-2348-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 05/13/2016] [Indexed: 11/16/2022]
Abstract
Linseed (Linum usitatissimum L.) is an annual oil crop that accounts for approximately 1 % of the world’s oilseed supplies. It produces seeds that are rich in the health-promoting ω-3 fatty acid, α-linolenic. In Kenya, linseed is grown in the Rift Valley and Western regions, places which often experience drought. This study was aimed at evaluating the effect of water stress on growth of three linseed cultivars and to establish the extent of drought tolerance in the three cultivars. A greenhouse pot experiment in a completely randomized design was conducted at Jomo Kenyatta University of Agriculture and Technology, Kenya. The pots were well watered until the fourth week when watering was completely withheld to a half of the pots (stressed) while the other half (well watered control) was maintained at 90 % field capacity. Destructive harvesting was done when the stressed pots were at 90, 70, 60, 50, 40 % field capacities and at permanent wilting point. The experiment was replicated thrice and was repeated twice (February–May and August–November 2014). There were no significant differences in production of leaves, plant height, number of tillers and biomass between the three varieties in both seasons. Subjecting the linseed varieties to permanent wilting resulted in reduced production of leaves, growth in height, production of tillers and dry weight by 20–40 %. Decline in all growth parameters begun when 30–80 % of available soil water had been used up. There existed linear relationships between the various evaluated growth parameters. These relationships were not influenced either by the water status of soil or the varieties. Relative water content for the three linseed varieties declined after 25–67 % of available soil water had been used up.
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Affiliation(s)
- Lilian Wambui Kariuki
- Department of Horticulture, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya
| | - Peter Masinde
- School of Agriculture, Meru University of Science and Technology, Meru, Kenya
| | - Stephen Githiri
- Department of Horticulture, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya
| | - Arnold N Onyango
- Department of Food Science and Technology, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya
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Boughalleb F, Abdellaoui R, Hadded Z, Neffati M. Anatomical adaptations of the desert species Stipa lagascae against drought stress. Biologia (Bratisl) 2015. [DOI: 10.1515/biolog-2015-0125] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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18
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Farooq M, Hussain M, Siddique KHM. Drought Stress in Wheat during Flowering and Grain-filling Periods. CRITICAL REVIEWS IN PLANT SCIENCES 2014. [PMID: 0 DOI: 10.1080/07352689.2014.875291] [Citation(s) in RCA: 139] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
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