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Zhang L, Ma D, Yu Y, Luo W, Jiang S, Feng S, Chen Z. Advances in biomacromolecule-functionalized magnetic particles for phytopathogen detection. Talanta 2025; 281:126876. [PMID: 39277940 DOI: 10.1016/j.talanta.2024.126876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 08/20/2024] [Accepted: 09/11/2024] [Indexed: 09/17/2024]
Abstract
Due to the increasing crop losses caused by common and newly emerging phytopathogens, there is a pressing need for the development of rapid and reliable methods for phytopathogen detection and analysis. Leveraging advancements in biochemical engineering technologies and nanomaterial sciences, researchers have put considerable efforts on utilizing biofunctionalized magnetic micro- and nanoparticles (MPs) to develop rapid and reliable systems for phytopathogen detection. MPs facilitate the rapid, high-throughput analysis and in-field applications, while the biomacromolecules, which play key roles in the biorecognitions, interactions and signal amplification, determine the specificity, sensitivity, reliability, and portability of pathogen detection systems. The integration of MPs and biomacromolecules provides dimensionality- and composition-dependent properties, representing a novel approach to develop phytopathogen detection systems. In this review, we summarize and discuss the general properties, synthesis and characterization of MPs, and focus on biomacromolecule-functionalized MPs as well as their representative applications for phytopathogen detection and analysis reported over the past decade. Extensively studied bioreceptors, such as antibodies, phages and phage proteins, nucleic acids, and glycans that are involved in the recognitions and interactions, are covered and discussed. Additionally, the integration of MPs-based detection system with portable microfluidic devices to facilitate their in-field applications is also discussed. Overall, this review focuses on biomacromolecule-functionalized MPs and their applications for phytopathogen detection, aiming to highlight their potential in developing advanced biosensing systems for effective plant protection.
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Affiliation(s)
- Libo Zhang
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China.
| | - Dumei Ma
- Institute of Mass Spectrometry, School of Material Science and Chemical Engineering, Ningbo University, Ningbo, Zhejiang, 315211, China
| | - Youbo Yu
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Wiewei Luo
- The Ninth Medical Center of Chinese PLA General Hospital, Chaoyang District, Beijing, 100101, China
| | - Shilong Jiang
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China
| | - Sheng Feng
- Department of Pathology and Laboratory Medicine, Boston University, Boston, MA, 02118, USA
| | - Zhuo Chen
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China.
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2
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Alam MW, Junaid PM, Gulzar Y, Abebe B, Awad M, Quazi SA. Advancing agriculture with functional NM: "pathways to sustainable and smart farming technologies". DISCOVER NANO 2024; 19:197. [PMID: 39636344 PMCID: PMC11621287 DOI: 10.1186/s11671-024-04144-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Accepted: 11/04/2024] [Indexed: 12/07/2024]
Abstract
The integration of nanotechnology in agriculture offers a transformative approach to improving crop yields, resource efficiency, and ecological sustainability. This review highlights the application of functional NM, such as nano-formulated agrochemicals, nanosensors, and slow-release fertilizers, which enhance the effectiveness of fertilizers and pesticides while minimizing environmental impacts. By leveraging the unique properties of NM, agricultural practices can achieve better nutrient absorption, reduced chemical runoff, and improved water conservation. Innovations like nano-priming can enhance seed germination and drought resilience, while nanosensors enable precise monitoring of soil and crop health. Despite the promising commercial potential, significant challenges persist regarding the safety, ecological impact, and regulatory frameworks for nanomaterial use. This review emphasizes the need for comprehensive safety assessments and standardized risk evaluation protocols to ensure the responsible implementation of nanotechnology in agriculture.
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Affiliation(s)
- Mir Waqas Alam
- Department of Physics, College of Science, King Faisal University, 31982, Al-Ahsa, Saudi Arabia.
| | - Pir Mohammad Junaid
- Department of Post Harvest Engineering and Technology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh, India
| | - Yonis Gulzar
- Department of Management Information Systems, College of Business Administration, King Faisal University, 31982, Al-Ahsa, Saudi Arabia
| | - Buzuayehu Abebe
- Department of Applied Chemistry, School of Applied Natural Sciences, Adama Science and Technology University, P.O. Box: 1888, Adama, Ethiopia.
| | - Mohammed Awad
- Department of Chemical Engineering, Toronto Metropolitan University, Toronto, ON, Canada
| | - S A Quazi
- Bapumiya Sirajoddin Patel Arts, Commerce and Science College, Pimpalgaon Kale, Jalgaon Jamod Dist, Buldhana, Maharashtra, India
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3
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Zhang X, Vinatzer BA, Li S. Hyperspectral imaging analysis for early detection of tomato bacterial leaf spot disease. Sci Rep 2024; 14:27666. [PMID: 39532930 PMCID: PMC11557939 DOI: 10.1038/s41598-024-78650-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 11/04/2024] [Indexed: 11/16/2024] Open
Abstract
Recent advancements in hyperspectral imaging (HSI) for early disease detection have shown promising results, yet there is a lack of validated high-resolution (spatial and spectral) HSI data representing the responses of plants at different stages of leaf disease progression. To address these gaps, we used bacterial leaf spot (Xanthomonas perforans) of tomato as a model system. Hyperspectral images of tomato leaves, validated against in planta pathogen populations for seven consecutive days, were analyzed to reveal differences between infected and healthy leaves. Machine learning models were trained using leaf-level full spectra data, leaf-level Vegetation index (VI) data, and pixel-level full spectra data at four disease progression stages. The results suggest that HSI can detect disease on tomato leaves at pre-symptomatic stages and differentiate bacterial disease spots from abiotic leaf spots. Using VI data as features for machine learning improved overall classification performance by 26-37% compared to the direct use of raw data. Critical wavelength bands and VIs varied across disease progression stages, suggesting that pre-symptomatic disease detection relied more on changes in leaf water content (1400 nm) and plant defense hormone-mediated responses (750 nm) rather than changes in leaf pigments or internal structure (800-900 nm), which may become more crucial during symptomatic stages. In conclusion, this study provides valuable insights into the dynamics of bacterial spot disease, revealing the potential benefits of leaf structure segmentation and VI group pattern analysis in HSI studies for the early detection of leaf diseases.
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Affiliation(s)
- Xuemei Zhang
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
| | - Boris A Vinatzer
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
| | - Song Li
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
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4
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Dyussembayev K, Akpe V, Yechshzhanov T, Cheesman MJ, Kim TH, Cock IE. Amplification-free detection of Ascochyta blight in chickpea using a simple molecular beacon assay. Sci Rep 2024; 14:23846. [PMID: 39394375 PMCID: PMC11470000 DOI: 10.1038/s41598-024-74564-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 09/26/2024] [Indexed: 10/13/2024] Open
Abstract
Ascochyta blight is a major biotic stress that limits chickpea production globally. Fungicide application remains one of the effective control measures for the endemic spread. Due to the serious threat that synthetic fungicides pose to crop quality, early diagnosis of the pathogen is imperative. Whilst there have previously been several conventional lab-based diagnostic methods developed for early detection of Ascochyta rabiei, they require long assay times, specialised equipment and facilities, and trained personnel to process the samples. To overcome this challenge, a rapid amplification-free detection assay using a molecular beacon probe was developed. The method consists of a simple assembly assay that accurately detects pathogen within 30 min. The developed assay is species-specific and has a similar sensitivity level as conventional amplification-based methods. Although it is still a lab-based technique, considering the simplicity of the assay, it has a great potential to be developed further as a reliable in-field diagnostic device for early detection and quantification of fungal pathogen spores.
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Affiliation(s)
- Kazbek Dyussembayev
- School of Environment and Science, Griffith University, Nathan, QLD, 4111, Australia
- L.N. Gumilyov Eurasian National University, Astana, 010000, Kazakhstan
| | - Victor Akpe
- School of Environment and Science, Griffith University, Nathan, QLD, 4111, Australia
| | - Talgat Yechshzhanov
- Pedagogical Institute, Astana International University, Astana, 010000, Kazakhstan
| | - Matthew J Cheesman
- Menzies Institute, Griffith University, Nathan, QLD, 4111, Australia
- School of Pharmacy and Medical Sciences, Griffith University, Gold Coast, QLD, 4222, Australia
| | - Tak H Kim
- School of Environment and Science, Griffith University, Nathan, QLD, 4111, Australia
- Queensland Micro and Nanotechnology Centre, Griffith University, Nathan, QLD, 4111, Australia
| | - Ian E Cock
- School of Environment and Science, Griffith University, Nathan, QLD, 4111, Australia.
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, 4111, Australia.
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Ramanathan S, Lau WJ, Goh PS, Gopinath SCB, Rawindran H, Omar MF, Ismail AF, Breadmore MC, See HH. Tailoring molecularly imprinted polymer on titanium-multiwalled carbon nanotube functionalized gold electrode for enhanced chlorophyll determination in microalgae health assessment. Mikrochim Acta 2024; 191:586. [PMID: 39251454 DOI: 10.1007/s00604-024-06662-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 08/27/2024] [Indexed: 09/11/2024]
Abstract
A unique method for determining chlorophyll content in microalgae is devised employing a gold interdigitated electrode (G-IDE) with a 10-µm gap, augmented by a nano-molecularly imprinted polymer (nano-MIP) and a titanium dioxide/multiwalled carbon nanotube (TiO2/MWCNT) nanocomposite. The nano-MIP, produced using chlorophyll template voids, successfully trapped chlorophyll, while the TiO2/MWCNT nanocomposite, synthesized by the sol-gel technique, exhibited a consistent distribution and anatase crystalline structure. The rebinding of procured chlorophyll powder, which was used as a template for nano-MIP synthesis, was identified with a high determination coefficient (R2 = 0.9857). By combining the TiO2/MWCNT nanocomposite with nano-MIP, the G-IDE sensing method achieved a slightly better R2 value of 0.9892 for detecting chlorophyll in microalgae. The presented G-IDE sensor showed a significant threefold enhancement in chlorophyll detection compared with commercially available chlorophyll powder. It had a detection limit of 0.917 mL (v/v) and a linear range that spanned from 10-6 to 1 mL. The effectiveness of the sensor in detecting chlorophyll in microalgae was confirmed through validation of its repeatability and reusability.
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Affiliation(s)
- Santheraleka Ramanathan
- Department of Chemical and Petroleum Engineering, Faculty of Engineering, Technology and Built Environment, UCSI University, Kuala Lumpur, Malaysia.
| | - Woei Jye Lau
- Faculty of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
- Advanced Membrane Technology Research Centre (AMTEC), Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
| | - Pei Sean Goh
- Faculty of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
- Advanced Membrane Technology Research Centre (AMTEC), Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
| | - Subash C B Gopinath
- Center for Global Health Research, Saveetha Medical College & Hospital, Saveetha Institute of Medical and Technical Sciences (SIMATS), Thandalam, Chennai-602 105, Tamil Nadu, India
- Faculty of Chemical Engineering & Technology, Universiti Malaysia Perlis (UniMAP), 02600, Arau, Perlis, Malaysia
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis (UniMAP), Kangar, Perlis, 01000, Malaysia
- Department of Technical Sciences, Western Caspian University, Baku, AZ, 1075, Azerbaijan
| | - Hemamalini Rawindran
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
| | - Muhammad Firdaus Omar
- Department of Physics, Faculty of Science, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
| | - Ahmad Fauzi Ismail
- Faculty of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
- Advanced Membrane Technology Research Centre (AMTEC), Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
| | - Michael C Breadmore
- Australian Centre for Research On Separation Science (ACROSS), School of Natural Sciences, University of Tasmania, Hobart, TAS, 7001, Australia
| | - Hong Heng See
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor, Malaysia
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6
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Kanapiya A, Amanbayeva U, Tulegenova Z, Abash A, Zhangazin S, Dyussembayev K, Mukiyanova G. Recent advances and challenges in plant viral diagnostics. FRONTIERS IN PLANT SCIENCE 2024; 15:1451790. [PMID: 39193213 PMCID: PMC11347306 DOI: 10.3389/fpls.2024.1451790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Accepted: 07/24/2024] [Indexed: 08/29/2024]
Abstract
Accurate and timely diagnosis of plant viral infections plays a key role in effective disease control and maintaining agricultural productivity. Recent advances in the diagnosis of plant viruses have significantly expanded our ability to detect and monitor viral pathogens in agricultural crops. This review discusses the latest advances in diagnostic technologies, including both traditional methods and the latest innovations. Conventional methods such as enzyme-linked immunosorbent assay and DNA amplification-based assays remain widely used due to their reliability and accuracy. However, diagnostics such as next-generation sequencing and CRISPR-based detection offer faster, more sensitive and specific virus detection. The review highlights the main advantages and limitations of detection systems used in plant viral diagnostics including conventional methods, biosensor technologies and advanced sequence-based techniques. In addition, it also discusses the effectiveness of commercially available diagnostic tools and challenges facing modern diagnostic techniques as well as future directions for improving informed disease management strategies. Understanding the main features of available diagnostic methodologies would enable stakeholders to choose optimal management strategies against viral threats and ensure global food security.
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Affiliation(s)
- Aizada Kanapiya
- Department of Biotechnology and Microbiology, L.N. Gumilyov Eurasian National University, Astana, Kazakhstan
| | - Ulbike Amanbayeva
- Laboratory of Biodiversity and Genetic Resources, National Center for Biotechnology, Astana, Kazakhstan
| | - Zhanar Tulegenova
- Department of Biotechnology and Microbiology, L.N. Gumilyov Eurasian National University, Astana, Kazakhstan
- Laboratory of Biodiversity and Genetic Resources, National Center for Biotechnology, Astana, Kazakhstan
| | - Altyngul Abash
- Department of Biotechnology and Microbiology, L.N. Gumilyov Eurasian National University, Astana, Kazakhstan
| | - Sayan Zhangazin
- Department of Biotechnology and Microbiology, L.N. Gumilyov Eurasian National University, Astana, Kazakhstan
| | - Kazbek Dyussembayev
- Department of Biotechnology and Microbiology, L.N. Gumilyov Eurasian National University, Astana, Kazakhstan
- Laboratory of Biodiversity and Genetic Resources, National Center for Biotechnology, Astana, Kazakhstan
| | - Gulzhamal Mukiyanova
- Laboratory of Biodiversity and Genetic Resources, National Center for Biotechnology, Astana, Kazakhstan
- Scientific Center "Agrotechnopark", Shakarim University, Semey, Kazakhstan
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7
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Ahmed S, Naqvi SMZA, Hussain F, Awais M, Ren Y, Wu J, Zhang H, Zang Y, Hu J. Quantifying Plant Signaling Pathways by Integrating Luminescence-Based Biosensors and Mathematical Modeling. BIOSENSORS 2024; 14:378. [PMID: 39194607 DOI: 10.3390/bios14080378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 07/30/2024] [Accepted: 08/01/2024] [Indexed: 08/29/2024]
Abstract
Plants have evolved intricate signaling pathways, which operate as networks governed by feedback to deal with stressors. Nevertheless, the sophisticated molecular mechanisms underlying these routes still need to be comprehended, and experimental validation poses significant challenges and expenses. Consequently, computational hypothesis evaluation gains prominence in understanding plant signaling dynamics. Biosensors are genetically modified to emit light when exposed to a particular hormone, such as abscisic acid (ABA), enabling quantification. We developed computational models to simulate the relationship between ABA concentrations and bioluminescent sensors utilizing the Hill equation and ordinary differential equations (ODEs), aiding better hypothesis development regarding plant signaling. Based on simulation results, the luminescence intensity was recorded for a concentration of 47.646 RLUs for 1.5 μmol, given the specified parameters and model assumptions. This method enhances our understanding of plant signaling pathways at the cellular level, offering significant benefits to the scientific community in a cost-effective manner. The alignment of these computational predictions with experimental results emphasizes the robustness of our approach, providing a cost-effective means to validate mathematical models empirically. The research intended to correlate the bioluminescence of biosensors with plant signaling and its mathematical models for quantified detection of specific plant hormone ABA.
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Affiliation(s)
- Shakeel Ahmed
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Syed Muhammad Zaigham Abbas Naqvi
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Fida Hussain
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Muhammad Awais
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Yongzhe Ren
- State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450002, China
| | - Junfeng Wu
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Hao Zhang
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Yiheng Zang
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Jiandong Hu
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
- State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450002, China
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8
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Nguyen HA, Anh Thi NP, Thien Trang NP, Ho TT, Trinh TND, Tran NKS, Trinh KTL. Recent advances in biosensors for screening plant pathogens. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:4485-4495. [PMID: 38940060 DOI: 10.1039/d4ay00766b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
Worldwide, plant pathogens have been a considerably important cause of economic loss in agriculture especially in the decades of agricultural intensification. The increasing losses in agriculture due to biotic plant diseases have drawn attention towards the development of plant disease analyzing methods. In this context, biosensors have emerged as significantly important tools which help farmers in on-field diagnosis of plant diseases. Compared to traditional methods, biosensors have outstanding features such as being highly sensitive and selective, cost-effective, portable, fast and user-friendly operation, and so on. There are three common types of biosensors including electrochemical, fluorescent, and colorimetric biosensors. In this review, some common biotic plant diseases caused by fungi, bacteria, and viruses are first summarized. Then, current advances in developing biosensors are discussed.
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Affiliation(s)
- Hanh An Nguyen
- Department of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam
| | - Nguyen Pham Anh Thi
- Department of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam
| | - Nguyen Pham Thien Trang
- Department of Molecular Biology, Institute of Food and Biotechnology, Can Tho University, Can Tho City, Vietnam
| | - Thanh-Tam Ho
- Institute for Global Health Innovations, Duy Tan University, Da Nang 550000, Viet Nam
- Biotechnology Department, College of Medicine and Pharmacy, Duy Tan University, Da Nang 550000, Viet Nam
| | - Thi Ngoc Diep Trinh
- Department of Materials Science, School of Applied Chemistry, Tra Vinh University, Vietnam
| | - Nguyen Khoi Song Tran
- NTT Hi-Tech Institute, Nguyen Tat Thanh University, Ward 13, District 04, Ho Chi Minh City 70000, Vietnam.
| | - Kieu The Loan Trinh
- BioNano Applications Research Center, Gachon University, 1342 Seongnam-daero, Sujeong-gu, Seongnam-si 13120, Republic of Korea.
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Kazemzadeh-Beneh H, Safarnejad MR, Norouzi P, Samsampour D, Alavi SM, Shaterreza D. Development of label-free electrochemical OMP-DNA probe biosensor as a highly sensitive system to detect of citrus huanglongbing. Sci Rep 2024; 14:12183. [PMID: 38806617 PMCID: PMC11133464 DOI: 10.1038/s41598-024-63112-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 05/24/2024] [Indexed: 05/30/2024] Open
Abstract
The fabrication of the first label-free electrochemical DNA probe biosensor for highly sensitive detection of Candidatus Liberibacter asiaticus (CLas), as the causal agent of citrus huanglongbing disease, is conducted here. An OMP probe was designed based on the hybridization with its target-specific sequence in the outer membrane protein (OMP) gene of CLas. The characterization of the steps of biosensor fabrication and hybridization process between the immobilized OMP-DNA probe and the target ssDNA oligonucleotides (OMP-complementary and three mismatches OMP or OMP-mutation) was monitored using cyclic voltammetry and electrochemical impedance spectroscopy based on increasing or decreasing in the electron transfer in [Fe (CN)6]3-/4- on the modified gold electrode surface. The biosensor sensitivity indicated that the peak currents were linear over ranges from 20 to 100 nM for OMP-complementary with the detection limit of 0.026 nM (S/N = 3). The absence of any cross-interference with other biological DNA sequences confirmed a high selectivity of fabricated biosensor. Likewise, it showed good specificity in discriminating the mutation oligonucleotides from complementary target DNAs. The functional performance of optimized biosensor was achieved via the hybridization of OMP-DNA probe with extracted DNA from citrus plant infected with CLas. Therefore, fabricated biosensor indicates promise for sensitivity and early detection of citrus huanglongbing disease.
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Affiliation(s)
- Hashem Kazemzadeh-Beneh
- Division of Biotechnology & Plant Molecular Genetic, Department of Horticulture Science, University of Hormozgan, Bandar Abbas, Iran
| | - Mohammad Reza Safarnejad
- Department of Plant Viruses, Agricultural Research Education and Extension Organization, Iranian Research Institute of Plant Protection, P.O. Box 1452-19395, Tehran, Iran.
| | - Parviz Norouzi
- Faculty of Chemistry, Center of Excellence in Electrochemistry, University of Tehran, Tehran, Iran
| | - Davood Samsampour
- Division of Biotechnology & Plant Molecular Genetic, Department of Horticulture Science, University of Hormozgan, Bandar Abbas, Iran
| | - Seyed Mehdi Alavi
- National Institute for Genetic Engineering and Biotechnology, Tehran, Iran
| | - Davood Shaterreza
- Faculty of Chemistry, Center of Excellence in Electrochemistry, University of Tehran, Tehran, Iran
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Bai Y, Xu P, Li S, Wang D, Zhang K, Zheng D, Yue D, Zhang G, He S, Li Y, Zou H, Deng Y. Signal amplification strategy of DNA self-assembled biosensor and typical applications in pathogenic microorganism detection. Talanta 2024; 272:125759. [PMID: 38350248 DOI: 10.1016/j.talanta.2024.125759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 01/17/2024] [Accepted: 02/06/2024] [Indexed: 02/15/2024]
Abstract
Biosensors have emerged as ideal analytical devices for various bio-applications owing to their low cost, convenience, and portability, which offer great potential for improving global healthcare. DNA self-assembly techniques have been enriched with the development of innovative amplification strategies, such as dispersion-to-localization of catalytic hairpin assembly, and dumbbell hybridization chain reaction, which hold great significance for building biosensors capable of realizing sensitive, rapid and multiplexed detection of pathogenic microorganisms. Here, focusing primarily on the signal amplification strategies based on DNA self-assembly, we concisely summarized the strengths and weaknesses of diverse isothermal nucleic acid amplification techniques. Subsequently, both single-layer and cascade amplification strategies based on traditional catalytic hairpin assembly and hybridization chain reaction were critically explored. Furthermore, a comprehensive overview of the recent advances in DNA self-assembled biosensors for the detection of pathogenic microorganisms is presented to summarize methods for biorecognition and signal amplification. Finally, a brief discussion is provided about the current challenges and future directions of DNA self-assembled biosensors.
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Affiliation(s)
- Yuxin Bai
- College of Medical Technology, Chengdu University of Traditional Chinese Medicine, 610075, Chengdu, China
| | - Pingyao Xu
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China
| | - Shi Li
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China
| | - Dongsheng Wang
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China
| | - Kaijiong Zhang
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China
| | - Dongming Zheng
- College of Medical Technology, Chengdu University of Traditional Chinese Medicine, 610075, Chengdu, China
| | - Daifan Yue
- College of Medical Technology, Chengdu University of Traditional Chinese Medicine, 610075, Chengdu, China
| | - Guiji Zhang
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China
| | - Shuya He
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China
| | - Yan Li
- College of Medical Technology, Chengdu University of Traditional Chinese Medicine, 610075, Chengdu, China.
| | - Haimin Zou
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China.
| | - Yao Deng
- Department of Clinical Laboratory, Sichuan Clinical Research Center for Cancer, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Affiliated Cancer Hospital of University of Electronic Science and Technology of China, 610041, Chengdu, China.
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11
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Dhahi TS, Dafhalla AKY, Saad SA, Zayan DMI, Ahmed AET, Elobaid ME, Adam T, Gopinath SCB. The importance, benefits, and future of nanobiosensors for infectious diseases. Biotechnol Appl Biochem 2024; 71:429-445. [PMID: 38238920 DOI: 10.1002/bab.2550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 12/19/2023] [Indexed: 04/11/2024]
Abstract
Infectious diseases, caused by pathogenic microorganisms such as bacteria, viruses, parasites, or fungi, are crucial for efficient disease management, reducing morbidity and mortality rates and controlling disease spread. Traditional laboratory-based diagnostic methods face challenges such as high costs, time consumption, and a lack of trained personnel in resource-poor settings. Diagnostic biosensors have gained momentum as a potential solution, offering advantages such as low cost, high sensitivity, ease of use, and portability. Nanobiosensors are a promising tool for detecting and diagnosing infectious diseases such as coronavirus disease, human immunodeficiency virus, and hepatitis. These sensors use nanostructured carbon nanotubes, graphene, and nanoparticles to detect specific biomarkers or pathogens. They operate through mechanisms like the lateral flow test platform, where a sample containing the biomarker or pathogen is applied to a test strip. If present, the sample binds to specific recognition probes on the strip, indicating a positive result. This binding event is visualized through a colored line. This review discusses the importance, benefits, and potential of nanobiosensors in detecting infectious diseases.
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Affiliation(s)
- Th S Dhahi
- Electronics Technical Department, Southern Technical University, Basra, Iraq
| | - Alaa Kamal Yousif Dafhalla
- Department of Computer Engineering, College of Computer Science and engineering, University of Hail, Hail, Kingdom of Saudi Arabia
| | - Sawsan Ali Saad
- Department of Computer Engineering, College of Computer Science and engineering, University of Hail, Hail, Kingdom of Saudi Arabia
| | | | | | - Mohamed Elshaikh Elobaid
- Faculty of Electronic Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, Malaysia
| | - Tijjani Adam
- Faculty of Electronic Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, Malaysia
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis (UniMAP), Kangar, Perlis, Malaysia
- Micro System Technology, Centre of Excellence (CoE), Universiti Malaysia Perlis (UniMAP), Arau, Perlis, Malaysia
- Advanced Communication Engineering, Centre of Excellence (ACE), Universiti Malaysia Perlis (UniMAP), Kangar, Perlis, Malaysia
| | - Subash C B Gopinath
- Faculty of Chemical Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, Malaysia
- Institute of Nano Electronic Engineering, Universiti Malaysia Perlis (UniMAP), Kangar, Perlis, Malaysia
- Micro System Technology, Centre of Excellence (CoE), Universiti Malaysia Perlis (UniMAP), Arau, Perlis, Malaysia
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12
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Chaudhari V, Vairagade V, Thakkar A, Shende H, Vora A. Nanotechnology-based fungal detection and treatment: current status and future perspective. NAUNYN-SCHMIEDEBERG'S ARCHIVES OF PHARMACOLOGY 2024; 397:77-97. [PMID: 37597093 DOI: 10.1007/s00210-023-02662-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 08/02/2023] [Indexed: 08/21/2023]
Abstract
Fungal infections impose a significant impact on global health and encompass major expenditures in medical treatments. Human mycoses, a fungal co-infection associated with SARS-CoV-2, is caused by opportunistic fungal pathogens and is often overlooked or misdiagnosed. Recently, there is increasing threat about spread of antimicrobial resistance in fungus, mostly in hospitals and other healthcare facilities. The diagnosis and treatment of fungal infections are associated with several issues, including tedious and non-selective detection methods, the growth of drug-resistant bacteria, severe side effects, and ineffective drug delivery. Thus, a rapid and sensitive diagnostic method and a high-efficacy and low-toxicity therapeutic approach are needed. Nanomedicine has emerged as a viable option for overcoming these limitations. Due to the unique physicochemical and optical properties of nanomaterials and newer biosensing techniques, nanodiagnostics play an important role in the accurate and prompt differentiation and detection of fungal diseases. Additionally, nano-based drug delivery techniques can increase drug permeability, reduce adverse effects, and extend systemic circulation time and drug half-life. This review paper is aimed at highlighting recent, promising, and unique trends in nanotechnology to design and develop diagnostics and treatment methods for fungal diseases.
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Affiliation(s)
- Vinay Chaudhari
- Shobhaben Pratapbhai Patel School of Pharmacy & Technology Management, SVKM's Narsee Monjee Institute of Management Studies, Mumbai, India
| | - Vaishnavi Vairagade
- Shobhaben Pratapbhai Patel School of Pharmacy & Technology Management, SVKM's Narsee Monjee Institute of Management Studies, Mumbai, India
| | - Ami Thakkar
- Shobhaben Pratapbhai Patel School of Pharmacy & Technology Management, SVKM's Narsee Monjee Institute of Management Studies, Mumbai, India
| | - Himani Shende
- Shobhaben Pratapbhai Patel School of Pharmacy & Technology Management, SVKM's Narsee Monjee Institute of Management Studies, Mumbai, India
| | - Amisha Vora
- Shobhaben Pratapbhai Patel School of Pharmacy & Technology Management, SVKM's Narsee Monjee Institute of Management Studies, Mumbai, India.
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13
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Wang Q, Hu Z, Li Z, Liu T, Bian G. Exploring the Application and Prospects of Synthetic Biology in Engineered Living Materials. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023:e2305828. [PMID: 37677048 DOI: 10.1002/adma.202305828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 09/05/2023] [Indexed: 09/09/2023]
Abstract
At the intersection of synthetic biology and materials science, engineered living materials (ELMs) exhibit unprecedented potential. Possessing unique "living" attributes, ELMs represent a significant paradigm shift in material design, showcasing self-organization, self-repair, adaptability, and evolvability, surpassing conventional synthetic materials. This review focuses on reviewing the applications of ELMs derived from bacteria, fungi, and plants in environmental remediation, eco-friendly architecture, and sustainable energy. The review provides a comprehensive overview of the latest research progress and emerging design strategies for ELMs in various application fields from the perspectives of synthetic biology and materials science. In addition, the review provides valuable references for the design of novel ELMs, extending the potential applications of future ELMs. The investigation into the synergistic application possibilities amongst different species of ELMs offers beneficial reference information for researchers and practitioners in this field. Finally, future trends and development challenges of synthetic biology for ELMs in the coming years are discussed in detail.
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Affiliation(s)
- Qiwen Wang
- Department of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, China
- Center of Materials Synthetic Biology, CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Zhehui Hu
- Center of Materials Synthetic Biology, CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
- National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan, 430071, China
| | - Zhixuan Li
- Center of Materials Synthetic Biology, CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
| | - Tiangang Liu
- Department of Urology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, China
| | - Guangkai Bian
- Center of Materials Synthetic Biology, CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China
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14
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Shukla S, Singh P, Shukla S, Ali S, Didwania N. Scope of Onsite, Portable Prevention Diagnostic Strategies for Alternaria Infections in Medicinal Plants. BIOSENSORS 2023; 13:701. [PMID: 37504100 PMCID: PMC10377195 DOI: 10.3390/bios13070701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 06/18/2023] [Accepted: 06/27/2023] [Indexed: 07/29/2023]
Abstract
Medicinal plants are constantly challenged by different biotic inconveniences, which not only cause yield and economic losses but also affect the quality of products derived from them. Among them, Alternaria pathogens are one of the harmful fungal pathogens in medicinal plants across the globe. Therefore, a fast and accurate detection method in the early stage is needed to avoid significant economic losses. Although traditional methods are available to detect Alternaria, they are more time-consuming and costly and need good expertise. Nevertheless, numerous biochemical- and molecular-based techniques are available for the detection of plant diseases, but their efficacy is constrained by differences in their accuracy, specificity, sensitivity, dependability, and speed in addition to being unsuitable for direct on-field studies. Considering the effect of Alternaria on medicinal plants, the development of novel and early detection measures is required to detect causal Alternaria species accurately, sensitively, and rapidly that can be further applied in fields to speed up the advancement process in detection strategies. In this regard, nanotechnology can be employed to develop portable biosensors suitable for early and correct pathogenic disease detection on the field. It also provides an efficient future scope to convert innovative nanoparticle-derived fabricated biomolecules and biosensor approaches in the diagnostics of disease-causing pathogens in important medicinal plants. In this review, we summarize the traditional methods, including immunological and molecular methods, utilized in plant-disease diagnostics. We also brief advanced automobile and efficient sensing technologies for diagnostics. Here we are proposing an idea with a focus on the development of electrochemical and/or colorimetric properties-based nano-biosensors that could be useful in the early detection of Alternaria and other plant pathogens in important medicinal plants. In addition, we discuss challenges faced during the fabrication of biosensors and new capabilities of the technology that provide information regarding disease management strategies.
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Affiliation(s)
- Sadhana Shukla
- Manav Rachna Centre for Medicinal Plant Pathology, Manav Rachna International Institute of Research and Studies, Faridabad 121004, India
- TERI-Deakin Nanobiotechnology Centre, The Energy and Resources Institute, Gurgaon 122003, India
| | - Pushplata Singh
- TERI-Deakin Nanobiotechnology Centre, The Energy and Resources Institute, Gurgaon 122003, India
| | - Shruti Shukla
- TERI-Deakin Nanobiotechnology Centre, The Energy and Resources Institute, Gurgaon 122003, India
| | - Sajad Ali
- Department of Biotechnology, Yeungnam University, Gyeongsan 38541, Republic of Korea
| | - Nidhi Didwania
- Manav Rachna Centre for Medicinal Plant Pathology, Manav Rachna International Institute of Research and Studies, Faridabad 121004, India
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15
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Yang P, Zhao L, Gao YG, Xia Y. Detection, Diagnosis, and Preventive Management of the Bacterial Plant Pathogen Pseudomonas syringae. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12091765. [PMID: 37176823 PMCID: PMC10181079 DOI: 10.3390/plants12091765] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 04/01/2023] [Accepted: 04/14/2023] [Indexed: 05/15/2023]
Abstract
Plant diseases caused by the pathogen Pseudomonas syringae are serious problems for various plant species worldwide. Accurate detection and diagnosis of P. syringae infections are critical for the effective management of these plant diseases. In this review, we summarize the current methods for the detection and diagnosis of P. syringae, including traditional techniques such as culture isolation and microscopy, and relatively newer techniques such as PCR and ELISA. It should be noted that each method has its advantages and disadvantages, and the choice of each method depends on the specific requirements, resources of each laboratory, and field settings. We also discuss the future trends in this field, such as the need for more sensitive and specific methods to detect the pathogens at low concentrations and the methods that can be used to diagnose P. syringae infections that are co-existing with other pathogens. Modern technologies such as genomics and proteomics could lead to the development of new methods of highly accurate detection and diagnosis based on the analysis of genetic and protein markers of the pathogens. Furthermore, using machine learning algorithms to analyze large data sets could yield new insights into the biology of P. syringae and novel diagnostic strategies. This review could enhance our understanding of P. syringae and help foster the development of more effective management techniques of the diseases caused by related pathogens.
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Affiliation(s)
- Piao Yang
- Department of Plant Pathology, College of Food, Agricultural, and Environmental Science, The Ohio State University, Columbus, OH 43210, USA
| | - Lijing Zhao
- Department of Plant Pathology, College of Food, Agricultural, and Environmental Science, The Ohio State University, Columbus, OH 43210, USA
| | - Yu Gary Gao
- OSU South Centers, The Ohio State University, 1864 Shyville Road, Piketon, OH 45661, USA
- Department of Extension, College of Food, Agricultural, and Environmental Sciences, The Ohio State University, Columbus, OH 43210, USA
| | - Ye Xia
- Department of Plant Pathology, College of Food, Agricultural, and Environmental Science, The Ohio State University, Columbus, OH 43210, USA
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16
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Neelam A, Tabassum S. Optical Sensing Technologies to Elucidate the Interplay between Plant and Microbes. MICROMACHINES 2023; 14:195. [PMID: 36677256 PMCID: PMC9866067 DOI: 10.3390/mi14010195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/08/2023] [Accepted: 01/09/2023] [Indexed: 06/17/2023]
Abstract
Plant-microbe interactions are critical for ecosystem functioning and driving rhizosphere processes. To fully understand the communication pathways between plants and rhizosphere microbes, it is crucial to measure the numerous processes that occur in the plant and the rhizosphere. The present review first provides an overview of how plants interact with their surrounding microbial communities, and in turn, are affected by them. Next, different optical biosensing technologies that elucidate the plant-microbe interactions and provide pathogenic detection are summarized. Currently, most of the biosensors used for detecting plant parameters or microbial communities in soil are centered around genetically encoded optical and electrochemical biosensors that are often not suitable for field applications. Such sensors require substantial effort and cost to develop and have their limitations. With a particular focus on the detection of root exudates and phytohormones under biotic and abiotic stress conditions, novel low-cost and in-situ biosensors must become available to plant scientists.
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Affiliation(s)
| | - Shawana Tabassum
- Department of Electrical Engineering, The University of Texas at Tyler, Tyler, TX 75799, USA
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17
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Ahmed FK, Alghuthaymi MA, Abd-Elsalam KA, Ravichandran M, Kalia A. Nano-Based Robotic Technologies for Plant Disease Diagnosis. NANOROBOTICS AND NANODIAGNOSTICS IN INTEGRATIVE BIOLOGY AND BIOMEDICINE 2023:327-359. [DOI: 10.1007/978-3-031-16084-4_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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18
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Yang Y, Chaffin TA, Ahkami AH, Blumwald E, Stewart CN. Plant synthetic biology innovations for biofuels and bioproducts. Trends Biotechnol 2022; 40:1454-1468. [PMID: 36241578 DOI: 10.1016/j.tibtech.2022.09.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 08/26/2022] [Accepted: 09/15/2022] [Indexed: 01/21/2023]
Abstract
Plant-based biosynthesis of fuels, chemicals, and materials promotes environmental sustainability, which includes decreases in greenhouse gas emissions, water pollution, and loss of biodiversity. Advances in plant synthetic biology (synbio) should improve precision and efficacy of genetic engineering for sustainability. Applicable synbio innovations include genome editing, gene circuit design, synthetic promoter development, gene stacking technologies, and the design of environmental sensors. Moreover, recent advancements in developing spatially resolved and single-cell omics contribute to the discovery and characterization of cell-type-specific mechanisms and spatiotemporal gene regulations in distinct plant tissues for the expression of cell- and tissue-specific genes, resulting in improved bioproduction. This review highlights recent plant synbio progress and new single-cell molecular profiling towards sustainable biofuel and biomaterial production.
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Affiliation(s)
- Yongil Yang
- Center for Agricultural Synthetic Biology, University of Tennessee Institute of Agriculture, Knoxville, TN, USA; Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA
| | - Timothy Alexander Chaffin
- Center for Agricultural Synthetic Biology, University of Tennessee Institute of Agriculture, Knoxville, TN, USA; Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA
| | - Amir H Ahkami
- Environmental Molecular Sciences Laboratory (EMSL), Pacific Northwest National Laboratory (PNNL), Richland, WA, USA
| | - Eduardo Blumwald
- Department of Plant Sciences, University of California, Davis, CA, USA
| | - Charles Neal Stewart
- Center for Agricultural Synthetic Biology, University of Tennessee Institute of Agriculture, Knoxville, TN, USA; Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA; Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
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19
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Mondal R, Dam P, Chakraborty J, Paret ML, Katı A, Altuntas S, Sarkar R, Ghorai S, Gangopadhyay D, Mandal AK, Husen A. Potential of nanobiosensor in sustainable agriculture: the state-of-art. Heliyon 2022; 8:e12207. [PMID: 36578430 PMCID: PMC9791828 DOI: 10.1016/j.heliyon.2022.e12207] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 08/28/2022] [Accepted: 11/30/2022] [Indexed: 12/13/2022] Open
Abstract
A rapid surge in world population leads to an increase in worldwide demand for agricultural products. Nanotechnology and its applications in agriculture have appeared as a boon to civilization with enormous potential in transforming conventional farming practices into redefined farming activities. Low-cost portable nanobiosensors are the most effective diagnostic tool for the rapid on-site assessment of plant and soil health including plant biotic and abiotic stress level, nutritional status, presence of hazardous chemicals in soil, etc. to maintain proper farming and crop productivity. Nanobiosensors detect physiological signals and convert them into standardized detectable signals. In order to achieve a reliable sensing analysis, nanoparticles can aid in signal amplification and sensor sensitivity by lowering the detection limit. The high selectivity and sensitivity of nanobiosensors enable early detection and management of targeted abnormalities. This study identifies the types of nanobiosensors according to the target application in agriculture sector.
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Affiliation(s)
- Rittick Mondal
- Chemical Biology Laboratory, Department of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, India
| | - Paulami Dam
- Chemical Biology Laboratory, Department of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, India
| | - Joydeep Chakraborty
- Department of Microbiology, Raiganj University, North Dinajpur, West Bengal 733134, India
| | - Mathew L. Paret
- North Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, Quincy, FL 32351, USA
- Plant Pathology Department, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA
| | - Ahmet Katı
- Department of Biotechnology, University of Health Sciences Turkey, 34668, Istanbul, Turkey
- Experimental Medicine Research and Application Center, University of Health Sciences Turkey, 34668, Istanbul, Turkey
| | - Sevde Altuntas
- Experimental Medicine Research and Application Center, University of Health Sciences Turkey, 34668, Istanbul, Turkey
- Department of Tissue Engineering, University of Health Sciences Turkey, 34668, Istanbul, Turkey
| | - Ranit Sarkar
- Department of Microbiology, Orissa University of Agriculture & Technology, Bhubaneswar, Odisha 751003, India
| | - Suvankar Ghorai
- Department of Microbiology, Raiganj University, North Dinajpur, West Bengal 733134, India
| | - Debnirmalya Gangopadhyay
- Silkworm Genetics and Breeding Laboratory, Department of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, India
| | - Amit Kumar Mandal
- Chemical Biology Laboratory, Department of Sericulture, Raiganj University, North Dinajpur, West Bengal 733134, India
| | - Azamal Husen
- Wolaita Sodo University, PO Box 138, Wolaita, Ethiopia
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Banakar M, Hamidi M, Khurshid Z, Zafar MS, Sapkota J, Azizian R, Rokaya D. Electrochemical Biosensors for Pathogen Detection: An Updated Review. BIOSENSORS 2022; 12:bios12110927. [PMID: 36354437 PMCID: PMC9688024 DOI: 10.3390/bios12110927] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Revised: 10/18/2022] [Accepted: 10/22/2022] [Indexed: 05/30/2023]
Abstract
Electrochemical biosensors are a family of biosensors that use an electrochemical transducer to perform their functions. In recent decades, many electrochemical biosensors have been created for pathogen detection. These biosensors for detecting infections have been comprehensively studied in terms of transduction elements, biorecognition components, and electrochemical methods. This review discusses the biorecognition components that may be used to identify pathogens. These include antibodies and aptamers. The integration of transducers and electrode changes in biosensor design is a major discussion topic. Pathogen detection methods can be categorized by sample preparation and secondary binding processes. Diagnostics in medicine, environmental monitoring, and biothreat detection can benefit from electrochemical biosensors to ensure food and water safety. Disposable and reusable biosensors for process monitoring, as well as multiplexed and conformal pathogen detection, are all included in this review. It is now possible to identify a wide range of diseases using biosensors that may be applied to food, bodily fluids, and even objects' surfaces. The sensitivity of optical techniques may be superior to electrochemical approaches, but optical methods are prohibitively expensive and challenging for most end users to utilize. On the other hand, electrochemical approaches are simpler to use, but their efficacy in identifying infections is still far from satisfactory.
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Affiliation(s)
- Morteza Banakar
- Dental Research Center, Dentistry Research Institute, Tehran University of Medical Sciences, Tehran 14176-14411, Iran
- Health Policy Research Center, Institute of Health, Shiraz University of Medical Sciences, Shiraz 71348-45794, Iran
| | - Masoud Hamidi
- Department of Medical Biotechnology, Faculty of Paramedicine, Guilan University of Medical Sciences, Rasht 41887-94755, Iran
| | - Zohaib Khurshid
- Department of Prosthodontics and Implantology, College of Dentistry, King Faisal University, Al-Hofuf, Al Ahsa 31982, Saudi Arabia
- Center of Excellence for Regenerative Dentistry, Department of Anatomy, Faculty of Dentistry, Chulalongkorn University, Bangkok 10330, Thailand
| | - Muhammad Sohail Zafar
- Department of Restorative Dentistry, College of Dentistry, Taibah University, Al Madinah, Al Munawwarah 41311, Saudi Arabia
- Department of Dental Materials, Islamic International Dental College, Riphah International University, Islamabad 44000, Pakistan
| | - Janak Sapkota
- Research Center of Applied Sciences and Technology, Kritipur 44600, Nepal
| | - Reza Azizian
- Pediatric Infectious Diseases Research Center (PIDRC), Tehran University of Medical Sciences, Tehran 14197-33151, Iran
- Biomedical Innovation & Start-Up Association (Biomino), Tehran University of Medical Sciences, Tehran 14166-34793, Iran
| | - Dinesh Rokaya
- Department of Clinical Dentistry, Walailak University International College of Dentistry, Walailak University, Bangkok 10400, Thailand
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Singh R, Kumar K, Purayannur S, Chen W, Verma PK. Ascochyta rabiei: A threat to global chickpea production. MOLECULAR PLANT PATHOLOGY 2022; 23:1241-1261. [PMID: 35778851 PMCID: PMC9366070 DOI: 10.1111/mpp.13235] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 05/03/2022] [Accepted: 05/20/2022] [Indexed: 06/01/2023]
Abstract
UNLABELLED The necrotrophic fungus Ascochyta rabiei causes Ascochyta blight (AB) disease in chickpea. A. rabiei infects all aerial parts of the plant, which results in severe yield loss. At present, AB disease occurs in most chickpea-growing countries. Globally increased incidences of A. rabiei infection and the emergence of new aggressive isolates directed the interest of researchers toward understanding the evolution of pathogenic determinants in this fungus. In this review, we summarize the molecular and genetic studies of the pathogen along with approaches that are helping in combating the disease. Possible areas of future research are also suggested. TAXONOMY kingdom Mycota, phylum Ascomycota, class Dothideomycetes, subclass Coelomycetes, order Pleosporales, family Didymellaceae, genus Ascochyta, species rabiei. PRIMARY HOST A. rabiei survives primarily on Cicer species. DISEASE SYMPTOMS A. rabiei infects aboveground parts of the plant including leaves, petioles, stems, pods, and seeds. The disease symptoms first appear as watersoaked lesions on the leaves and stems, which turn brown or dark brown. Early symptoms include small circular necrotic lesions visible on the leaves and oval brown lesions on the stem. At later stages of infection, the lesions may girdle the stem and the region above the girdle falls off. The disease severity increases at the reproductive stage and rounded lesions with concentric rings, due to asexual structures called pycnidia, appear on leaves, stems, and pods. The infected pod becomes blighted and often results in shrivelled and infected seeds. DISEASE MANAGEMENT STRATEGIES Crop failures may be avoided by judicious practices of integrated disease management based on the use of resistant or tolerant cultivars and growing chickpea in areas where conditions are least favourable for AB disease development. Use of healthy seeds free of A. rabiei, seed treatments with fungicides, and proper destruction of diseased stubbles can also reduce the fungal inoculum load. Crop rotation with nonhost crops is critical for controlling the disease. Planting moderately resistant cultivars and prudent application of fungicides is also a way to combat AB disease. However, the scarcity of AB-resistant accessions and the continuous evolution of the pathogen challenges the disease management process. USEFUL WEBSITES https://www.ndsu.edu/pubweb/pulse-info/resourcespdf/Ascochyta%20blight%20of%20chickpea.pdf https://saskpulse.com/files/newsletters/180531_ascochyta_in_chickpeas-compressed.pdf http://www.pulseaus.com.au/growing-pulses/bmp/chickpea/ascochyta-blight http://agriculture.vic.gov.au/agriculture/pests-diseases-and-weeds/plant-diseases/grains-pulses-and-cereals/ascochyta-blight-of-chickpea http://www.croppro.com.au/crop_disease_manual/ch05s02.php https://www.northernpulse.com/uploads/resources/722/handout-chickpeaascochyta-nov13-2011.pdf http://oar.icrisat.org/184/1/24_2010_IB_no_82_Host_Plant https://www.crop.bayer.com.au/find-crop-solutions/by-pest/diseases/ascochyta-blight.
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Affiliation(s)
- Ritu Singh
- Plant Immunity LaboratoryNational Institute of Plant Genome Research (NIPGR)New DelhiIndia
| | - Kamal Kumar
- Plant Immunity LaboratoryNational Institute of Plant Genome Research (NIPGR)New DelhiIndia
- Department of Plant Molecular BiologyUniversity of Delhi (South Campus)New DelhiIndia
| | - Savithri Purayannur
- Plant Immunity LaboratoryNational Institute of Plant Genome Research (NIPGR)New DelhiIndia
- Department of Entomology and Plant PathologyNorth Carolina State UniversityRaleighNorth CarolinaUSA
| | - Weidong Chen
- Grain Legume Genetics and Physiology Research Unit, USDA Agricultural Research Service, and Department of Plant PathologyWashington State UniversityPullmanWashingtonUSA
| | - Praveen Kumar Verma
- Plant Immunity LaboratoryNational Institute of Plant Genome Research (NIPGR)New DelhiIndia
- Plant Immunity Laboratory, School of Life SciencesJawaharlal Nehru UniversityNew DelhiIndia
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22
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Kumar A, Choudhary A, Kaur H, Guha S, Mehta S, Husen A. Potential Applications of Engineered Nanoparticles in Plant Disease Management: A Critical Update. CHEMOSPHERE 2022; 295:133798. [PMID: 35122813 DOI: 10.1016/j.chemosphere.2022.133798] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 01/08/2022] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
Abstract
Plant diseases caused by pathogenic entities pose severe issues to global food security. Effective sensory applications and tools for the effective determination of plant diseases become crucial to the assurance of food supply and agricultural sustainability. Antibody-mediated molecular assays and nucleic acid are gold-standard approaches for plant disease diagnosis, but the evaluating methodologies are liable, complex, and laborious. With the rise in global food demand, escalating the food production in threats of diverse pathogen ranges, and climate change is a major challenge. Engineered nanoparticles (NPs) have been inserted into conventional laboratory sequence technologies or molecular assays that provide a remarkable increment in selectivity and sensitivity. In the present scenario, they are useful in plant disease management as well as in plant health monitoring. The use of NPs could sustainably mitigate numerous food security issues and or threats in disease management by decreasing the risk of chemical inputs and alleviating supra detection of pathogens. Overall, this review paper discusses the role of NPs in plant diseases management, available commercial products. Additionally, the future directions and their regulatory laws in the usage of the nano-diagnostic approach for plant health monitoring have been explained.
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Affiliation(s)
- Antul Kumar
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Anuj Choudhary
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Harmanjot Kaur
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Satyakam Guha
- Department of Botany, Hansraj College, University of Delhi, Delhi, 110007, India
| | - Sahil Mehta
- International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, 110067, India; School of Agricultural Sciences, K.R. Mangalam University, Sohna Rural, Haryana, 122103, India
| | - Azamal Husen
- Wolaita Sodo University, P.O. Box: 138, Wolaita, Ethiopia.
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Latent potential of current plant diagnostics for detection of sugarcane diseases. CURRENT RESEARCH IN BIOTECHNOLOGY 2022. [DOI: 10.1016/j.crbiot.2022.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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24
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Avila-Quezada GD, Golinska P, Rai M. Engineered nanomaterials in plant diseases: can we combat phytopathogens? Appl Microbiol Biotechnol 2021; 106:117-129. [PMID: 34913996 DOI: 10.1007/s00253-021-11725-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 11/29/2021] [Accepted: 11/30/2021] [Indexed: 02/07/2023]
Abstract
Engineered nanomaterials (ENM) have a high potential for use in several areas of agriculture including plant pathology. Nanoparticles (NPs) alone can be applied for disease management due to their antimicrobial properties. Moreover, nanobiosensors allow a rapid and sensitive diagnosis of pathogens because NPs can be conjugated with nucleic acids, proteins and other biomolecules. The use of ENM in diagnosis, delivery of fungicides and therapy is an eco-friendly and economically viable alternative. This review focuses on different promising studies concerning ENM used for plant disease management including viruses, fungi, oomycetes and bacteria; diagnosis and delivery of antimicrobials and factors affecting the efficacy of nanomaterials, entry, translocation and toxicity. Although much research is required on metallic NPs due to the possible risks to the final consumer, ENMs are undoubtedly very useful tools to achieve food security in the world. KEY POINTS: • Increasing global population and fungicides have necessitated alternative technologies. • Nanomaterials can be used for detection, delivery and therapy of plant diseases. • The toxicity issues and safety should be considered before the use of nanomaterials.
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Affiliation(s)
| | - Patrycja Golinska
- Department of Microbiology, Nicolaus Copernicus University, 87-100, Toruń, Poland
| | - Mahendra Rai
- Department of Microbiology, Nicolaus Copernicus University, 87-100, Toruń, Poland.
- Nanotechnology Laboratory, Department of Biotechnology, SGB Amravati University, Amravati, 444 602, Maharashtra, India.
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