Aerobic Denitrification Microbial Community and Function in Zero-Discharge Recirculating Aquaculture System Using a Single Biofloc-Based Suspended Growth Reactor: Influence of the Carbon-to-Nitrogen Ratio

Increasing fish production in recirculating aquaculture system by integrating a biofloc-worm reactor for protein recovery

Aquaculture, producing half of global fish production, offers a high-quality protein source for humans. Improving nitrogen use efficiency (NUE) through microbial protein recovery is crucial for increasing fish production and reducing environmental footprint. However, the poor palatability and high moisture content of microbial protein make its utilization challenging. Here, a biofloc-worm reactor was integrated into a recirculating aquaculture system (BW_RAS) for the first time to convert microbial protein into Tubificidae (Oligochaeta) biomass, which was used as direct feed for culturing fish. Batch experiments indicated that an aeration rate of 0.132 m3 L -1 h -1 and a worm density of 0.3 g cm-2 on the carrier were optimal for microbial biomass growth and worm predation, respectively. Compared to the biofloc reactor-based recirculating aquaculture system (B_RAS), the BW_RAS improved water quality, NUE, and fish production by 17.1 % during a 120-day aquaculture period. The abundance of heterotrophic aerobic denitrifier Deinococcus in BW_RAS was one order of magnitude higher than in B_RAS, while heterotrophic bacteria Mycobacterium was more abundant in B_RAS. Denitrifiers cooperated with organic matter degraders and nitrogen assimilation bacteria for protein recovery and gaseous nitrogen loss while competing with predatory bacteria. Function prediction and qPCR indicated greater aerobic respiration, nitrate assimilation, nitrification (AOB-amoA), and denitrification (napA, nirK, nirS, nosZI), but lower fermentation in BWR compared to BR. This study demonstrated that BW_RAS increased microbial protein production and aerobic nitrogen cycling through ongoing worm predation, further enhancing fish production to a commercially viable level.

Distinct microbial communities enriched in water-saturated and unsaturated reactors influence performance of integrated hydroponics-microbial electrochemical technology

This study aimed to understand the wastewater treatment and electricity generation performance besides the microbial communities of the integrated Hydroponics-Microbial Electrochemical Technology (iHydroMET) systems operated with water-saturated and water-unsaturated reactors. The organics removal was slightly higher in the water-unsaturated system (93 ± 4 %) than in the water-saturated system (87 ± 2 %). The total nitrogen removal and electric voltage were considerably higher in the water-saturated system (42 ± 5 %; 111 ± 8 V per reactor) than in the water-unsaturated system (18 ± 3 %; 95 ± 9 V per reactor). The enhanced organics and nitrogen removal and high voltage output in respective conditions were due to the dominance of polysaccharide-degrading aerobes (e.g., Pirellula), anammox bacteria (e.g., Anammoximicrobium), denitrifiers (e.g., Thauera and Rheinheimera), and electroactive microorganisms (e.g., Geobacter). The differential performance governed by distinct microbial communities under the tested conditions indicates that an appropriate balancing of water saturation and unsaturation in reactors is crucial to achieving optimum iHydroMET performance.

Diversity, community structure, and abundance of nirS-type denitrifying bacteria on suspended particulate matter in coastal high-altitude aquaculture pond water

Denitrifying bacteria harboring the nitrate reductase S (nirS) gene convert active nitrogen into molecular nitrogen, and alleviate eutrophication in aquaculture water. Suspended particulate matter (SPM) is an important component of aquaculture water and a carrier for denitrification. SPM with different particle sizes were collected from a coastal high-altitude aquaculture pond in Maoming City, China. Diversity, community structure, abundance of nirS-type denitrifying bacteria on SPM and environmental influencing factors were studied using high-throughput sequencing, fluorescence quantitative PCR, and statistical analysis. Pseudomonas, Halomonas, and Wenzhouxiangella were the dominant genera of nirS-type denitrifying bacteria on SPM from the ponds. Network analysis revealed Pseudomonas and Halomonas as the key genera involved in the interaction of nirS-type denitrifying bacteria on SPM in the ponds. qPCR indicated a trend toward greater nirS gene abundance in progressively larger SPM. Dissolved oxygen, pH, temperature, and SPM particle size were the main environmental factors influencing changes in the nirS-type denitrifying bacterial community on SPM in coastal high-altitude aquaculture pond water. These findings increase our understanding of the microbiology of nitrogen cycle processes in aquaculture ecosystem, and will help optimize aquatic tailwater treatment strategies.

Swinging between the beneficial and harmful microbial community in biofloc technology: A paradox

Biofloc Technology (BFT) is proven to be the fulcrum of sustainable recirculating aquaculture system especially under zero water discharge condition. The efficiency of BFT system is reinforced by an unswerving microbial community in the system. Several researchers have made copious reports on the microorganisms in BFT and identified heterotrophic bacteria predominant in the microbial composition. A summary of these researches considers these microorganisms playing the role of chemo-photosynthetic autotrophs, organic detoxifiers, probiotic, decomposers/bioflocculants, bio-leachers and pathogens. Although these functional roles are well identified, the reports have failed to sufficiently illustrate the borderline at which these microbial communities fail to serve their beneficial roles in BFT system. This review paper firstly presents a snapshot of some indispensable water quality conditions and zootechnical variables aided by the microbial community in floc as well as the amphibolic process that synthesizes nutrient from the organic deposit in BFT. Furthermore, information on the microbial community in BFT is evaluated to have Bacillus sp., Lecane sp. and Pseudomonas sp. serving all-encompassing role in BFT while Vibrio sp. and Enterobacter sp. are pathogenic under unsuitable water quality conditions. Functional characterisation of the commonly reported microorganisms in BFT categorised 21.95 % as most critical, whose abundance indicates an efficient BFT.

Effect and microbial mechanism of pharmaceutical and personal care product exposure on partial nitrification process and nitrous oxide emission

This study focused on the short- and long-term exposure of pharmaceutical and personal care products (PPCPs) to the partial nitrification process and nitrous oxide emission. The corresponding microbial mechanisms were also explored. The results revealed a concentration-dose effect on the partial nitrification process. Moreover, the PPCP concentration of ≥2 μg/L featured inhibitory effects on the process. The solo effect of PPCP on the partial nitrification process was analyzed through microcosmic experiments, and the results revealed significant variations in PN. A dose-effect relationship existed between the PPCP concentration and N2O emission intensity. After exposure to PPCPs, the N2O emission released during the partial nitrification process was significantly reduced. Different PPCPs featured various effects in mitigating N2O emissions. Low PPCP concentrations led to a reduction in the richness and diversity of microbes, but their community structure remained significantly unchanged. High PPCP concentrations (≥5 μg/L) resulted in increased species richness and diversity, but their microbial community composition was significantly affected. The function prediction and nitrogen metabolic pathway analysis indicated that PPCP exposure led to the inhibition of the ammonia oxidation process. However, all genes encoding denitrification enzymes were upregulated. The microorganisms in the microbial community featured modular structural properties and wide synergistic relationships between genera. This study provides valuable insights into the effect of PPCP exposure on the particle nitrification process and corresponding changes in the microbial community.

Homogeneous environmental selection mainly determines the denitrifying bacterial community in intensive aquaculture water

Nitrate reduction by napA (encodes periplasmic nitrate reductase) bacteria and nitrous oxide reduction by nosZ (encodes nitrous oxide reductase) bacteria play important roles in nitrogen cycling and removal in intensive aquaculture systems. This study investigated the diversity, dynamics, drivers, and assembly mechanisms of total bacteria as well as napA and nosZ denitrifiers in intensive shrimp aquaculture ponds over a 100-day period. Alpha diversity of the total bacterial community increased significantly over time. In contrast, the alpha diversity of napA and nosZ bacteria remained relatively stable throughout the aquaculture process. The community structure changed markedly across all groups over the culture period. Total nitrogen, phosphate, total phosphorus, and silicate were identified as significant drivers of the denitrifying bacterial communities. Network analysis revealed complex co-occurrence patterns between total, napA, and nosZ bacteria which fluctuated over time. A null model approach showed that, unlike the total community dominated by stochastic factors, napA and nosZ bacteria were primarily governed by deterministic processes. The level of determinism increased with nutrient loading, suggesting the denitrifying community can be manipulated by bioaugmentation. The dominant genus Ruegeria may be a promising candidate for introducing targeted denitrifiers into aquaculture systems to improve nitrogen removal. Overall, this study provides important ecological insights into aerobic and nitrous oxide-reducing denitrifiers in intensive aquaculture, supporting strategies to optimize microbial community structure and function.

Effect and microbial mechanism of suspended sediments particle size on nitrous oxide emission in eutrophic lakes

Suspended sediment (SPS) is an important environmental factor in eutrophic lakes, where they may play a significant role in the microbial nitrogen cycle and thus affect the N2O source and sink function. This study investigated the correlation and corresponding microbial mechanisms between N2O emission fluxes and SPS particle sizes. N2O emission characteristics were investigated in four parallel operated lab-scale microcosmic systems, in which different sizes of SPS particles were inoculated (i.e., <75, 75-150, 150-300, and >300 μm). The results show that, N2O emission fluxes in the eutrophic lakes were exponentially correlated with the lake trophic level index (TLI) (R2 = 0.94, p < 0.01) and the specific surface area of the SPS (R2 = 0.38, p < 0.05). In the microcosmic systems, SPS with 75-150 μm particles had the highest N2O emission rate of 5.94 ± 0.007 μg N/L/d, which was 2.6 times that of the <75 μm particle size system. The microcosmic system with particle size >300 μm had the highest N2O reduction rate (Vmax) of 6.776 μmol/L/h, which was 16-50 times that of the other three groups. Larger particle size SPS have a smaller specific surface area, which could affect the microenvironment on SPS surface and thus affect the microbe functions. The microbial community structure results indicated that the dominant microorganisms on the SPS surface were denitrifying bacteria. The maximum (nirS + nirK)/nosZ ratio was 30.2 for the 75-150 μm system, which was nearly 2 times higher than the other systems. The >300 μm system had the highest nosZ abundance, indicating a strong ability to reduce N2O. The co-occurrence networks analysis indicated that the cooperation and competition among nitrifiers and denitrifiers determined N2O emissions. These results provide fundamental insights into the influence of SPS size on N2O emissions in eutrophic lakes.

Molecular and Dual-Isotopic Profiling of the Microbial Controls on Nitrogen Leaching in Agricultural Soils under Managed Aquifer Recharge

Nitrate (NO₃^-) leaching is a serious health and ecological concern in global agroecosystems, particularly those under the application of agricultural-managed aquifer recharge (Ag-MAR); however, there is an absence of information on microbial controls affecting NO₃^- leaching outcomes. We combine natural dual isotopes of NO₃^- (¹⁵N/¹⁴N and ¹⁸O/¹⁶O) with metagenomics, quantitative polymerase chain reaction (PCR), and a threshold indicator taxa analysis (TITAN) to investigate the activities, taxon profiles, and environmental controls of soil microbiome associated with NO₃^- leaching at different depths from Californian vineyards under Ag-MAR application. The isotopic signatures demonstrated a significant priming effect (P < 0.01) of Ag-MAR on denitrification activities in the topsoil (0-10 cm), with a 12-25-fold increase of ¹⁵N-NO₃^- and ¹⁸O-NO₃^- after the first 24 h of flooding, followed by a sharp decrease in the enrichment of both isotopes with ∼80% decline in denitrification activities thereafter. In contrast, deeper soils (60-100 cm) showed minimal or no denitrification activities over the course of Ag-MAR application, thus resulting in 10-20-fold of residual NO₃^- being leached. Metagenomic profiling and laboratory microcosm demonstrated that both nitrifying and denitrifying groups, responsible for controlling NO₃^- leaching, decreased in abundance and potential activity rates with soil depth. TITAN suggested that Nitrosocosmicus and Bradyrhizobium, as the major nitrifier and denitrifier, had the highest and lowest tipping points with regard to the NO₃^- changes (P < 0.05), respectively. Overall, our study provides new insight into specific depth limitations of microbial controls on soil NO₃^- leaching in agroecosystems.

Sustainable technology: potential of biomass (Bambusa tuldoides) for biological denitrification of wastewater generated in shrimp farming

Wastewater from shrimp farming is rich in organic material, solids, and nutrients, which cause a series of environmental problems when released into the environment. Currently, for the removal of nitrogen compounds from wastewater, among the most studied methods is biological denitrification. The objective of this study was to evaluate the operational parameters for the development of a more sustainable technology for the removal of nitrogen compounds from shrimp farm wastewater, using Bambusa tuldoides (a species of bamboo) as a source of carbon and a material conducive to the development of selected denitrifying bacteria. To optimize the process, biological denitrification assays were performed varying the following parameters: bamboo length (cm), pH, temperature, and stoichiometric proportions of C and N. The operational stability of the process with the reuse of the bamboo biomass was also evaluated. Cronobacter sakazakii and Bacillus cereus were identified as denitrifying microorganisms present in reactor with bamboo biomass. The best operational conditions observed were pH 6 to 7 and temperature 30 to 35 °C, and the addition of an external carbon source was not necessary for the denitrification process to occur efficiently. Under these conditions, biological denitrification occurred with an average efficiency above 90% based on the removal of the nitrogen contaminants evaluated (NO₃-N and NO₂-N). Regarding operational stability, 8 cycles were performed using the same source of carbon without reducing the efficiency of the process.

Evaluating the sources and fate of nitrate in riparian aquifers under agricultural land using in situ-measured noble gases, stable isotopes, and metabolic genes

Riparian zones with their buffering ability and abundant water supply are often subjected to intensive agricultural activities. We investigated a riparian aquifer located near a stream in South Korea that recently experienced sharply decreasing groundwater levels and elevated nitrate (NO₃^-) concentrations, which were attributed to local agricultural activities. Our goal was to identify the predominant nitrogen sources and NO₃^- removal processes. Multiple approaches including geochemical and isotopic tracers, land-use analysis, metabolic gene quantification, and inert gas tracers were used to elucidate groundwater and nutrient dynamics in stream-side granitic aquifers. The dual isotopic composition of NO₃^- identified manure and sewage as the major sources of NO₃^- contamination. Denitrification was the dominant NO₃^- removal process in the aquifer, as demonstrated by the negative relationship between δ¹⁵N and δ¹⁸O values in NO₃^-and NO₃^-/Cl^-. Denitrification and anammox genes were also observed in microbial communities of the aquifer throughout the study site, suggesting that these processes support effective natural NO₃^- attenuation in groundwater. A mixing model constructed using a catchment-scale dataset including SiO₂ concentrations and δ¹⁸O-H₂O suggested that mixing with paddy soil water was the major driver of denitrification in the aquifer at the study site, where impervious layers provided anaerobic conditions for natural NO₃^- attenuation. Denitrification reduced the NO₃^- flux into the nearby stream by up to 114.4 NO₃^- kg/ha/y (26 kg N/ha/y). The N₂ generated by denitrification did not accumulate in the groundwater, but mostly escaped from groundwater to the atmosphere, as demonstrated by the degassed signature of dissolved inert gases below the air saturated water level. This study identified the predominant NO₃^- sources and conceptualized N cycling in the heavily developed agricultural riparian aquifer using multiple tracers, demonstrating that NO₃^- is partially removed through denitrification and possibly anammox while N₂ mostly escapes into the atmosphere.

NirS-type denitrifying bacteria in aerobic water layers of two drinking water reservoirs: Insights into the abundance, community diversity and co-existence model

The nirS-type denitrifying bacterial community is the main drivers of the nitrogen loss process in drinking water reservoir ecosystems. The temporal patterns in nirS gene abundance and nirS-type denitrifying bacterial community harbored in aerobic water layers of drinking water reservoirs have not been studied well. In this study, quantitative polymerase chain reaction (qPCR) and Illumina Miseq sequencing were employed to explore the nirS gene abundance and denitrifying bacterial community structure in two drinking water reservoirs. The overall results showed that the water quality parameters in two reservoirs had obvious differences. The qPCR results suggested that nirS gene abundance ranged from (2.61 ± 0.12) × 10⁵ to (3.68 ± 0.16) × 10⁵ copies/mL and (3.01 ± 0.12) × 10⁵ to (5.36 ± 0.31) × 10⁵ copies/mL in Jinpen and Lijiahe reservoirs, respectively. The sequencing results revealed that Paracoccus sp., Azoarcus sp., Dechloromonas sp. and Thauera sp. were the dominant genera observed. At species level, Cupriavidus necator, Dechloromonas sp. R-28400, Paracoccus denitrificans and Pseudomonas stutzeri accounted for more proportions in two reservoirs. More importantly, the co-occurrence network analysis demonstrated that Paracoccus sp. R-24615 and Staphylococcus sp. N23 were the keystone species observed in Jinpen and Lijiahe reservoirs, respectively. Redundancy analysis indicated that water quality (particularly turbidity, water temperature, pH and Chlorophyll a) and sampling time had significant influence on the nirS-type denitrifying bacterial community in both reservoirs. These results will shed new lights on exploring the dynamics of nirS-type denitrifying bacteria in aerobic water layers of drinking water reservoirs.

Nitrogen Removal Characteristics of a Marine Denitrifying Pseudomonas stutzeri BBW831 and a Simplified Strategy for Improving the Denitrification Performance Under Stressful Conditions

A marine aerobic denitrifying bacterium was isolated and identified as Pseudomonas stutzeri BBW831 from the seabed silt of Beibu Gulf in China. According to the genome analysis, P. stutzeri BBW831 possessed a total of 14 genes (narG, narH, narI, narJ, napA, napB, nirB, nirD, nirS, norB, norC, norD, norQ, and nosZ) responsible for fully functional enzymes (nitrate reductase, nitrite reductase, nitric oxide reductase, and nitrous oxide reductase) involved in the complete aerobic denitrification pathway, suggesting that it had the potential for reducing nitrate to the final N₂. Denitrification results showed that P. stutzeri BBW831 exhibited efficient nitrogen removal characteristics. Within 12 h, the NO₃^--N removal efficiency and rate reached 94.64% and 13.09 mg·L^-1·h^-1 under 166.10 ± 3.75 mg/L NO₃^--N as the sole nitrogen source, and removal efficiency of the mixed nitrogen (50.50 ± 0.55, 62.28 ± 0.74, and 64.26 ± 0.90 mg/L of initial NH₄⁺-N, NO₃^--N, and NO₂^--N, respectively) was nearly 100%. Furthermore, a simplified strategy, by augmenting the inoculation biomass, was developed for promoting the nitrogen removal performance under high levels of NO₂^--N and salinity. As a result, the removal efficiency of the initial NO₂^--N up to approximately 130 mg/L reached 99.46% within 8 h, and the NO₃^--N removal efficiency achieved at 59.46% under the NaCl concentration even up to 50 g/L. The C/N ratio of 10 with organic acid salt such as trisodium citrate and sodium acetate as the carbon source was most conducive for cell growth and nitrogen removal by P. stutzeri BBW831, respectively. In conclusion, the marine P. stutzeri BBW831 contained the functional genes responsible for a complete aerobic denitrification pathway (NO₃^--N → NO₂^--N → NO → N₂O → N₂), and had great potential for the practical treatment of high-salinity nitrogenous mariculture wastewater.

Microplastics distribution characteristics in typical inflow rivers of Taihu lake: Linking to nitrous oxide emission and microbial analysis

The microplastics in nature water are important for the environmental fate of nitrous oxide (N₂O). This study investigated the influence and microbial mechanism of microplastic abundance to the N₂O flux in typical inflow rivers of Taihu lake. The microplastic abundance were in a range of 160-700 particles/m³ surface water, and 514-3018 particles/kg dry sediment. The highest percentage of microplastic color was transparent, significantly higher than other color (p<0.0001) in both surface water and sediment. The dominant microplastic size was 500-5000 μm in surface water, while size lower than 1000 μm was dominant in sediment. The microplastic abundance in sediment was negatively correlated with the concentration of suspended sediments (SPS) (p<0.05), Chl-a (p<0.05), NH₄⁺-N (p<0.05) and TP (p<0.01) in inflow river surface water. The dissolved N₂O concentration were 45.71-132.42 nmol/L, and the N₂O fluxes were 29.85-276.60 μmol/m²/d. The dissolved N₂O concentration was significantly correlated with the nirK abundance and nirK/nosZI ratio negatively (p<0.05), revealed that sediment nirK-type denitrification was the main driver of dissolved N₂O. Meanwhile, the N₂O flux (water-air interface) was significantly correlated with nosZI, napA, narG and nirS negatively, implied that nitrification and denitrification interaction in sediment is the main influence factor. The denitrification process in sediment was the main driven factor of N₂O releasing. Mantel-test shows that microplastic abundance in surface water was significantly correlated with nitrification (p = 0.001∼0.01) and denitrification (p = 0.01∼0.05) genera in water. The dominant denitrification microorganism was Dechloromonas in sediment and Flavobacterium in surface water. These results provided new insight into the fact that plastisphere which comprises microbial community on microplastic could affect the N₂O emission in aquatic system.

Efficient nitrate removal of immobilized mixed aerobic denitrifying bacteria and community dynamics response to temperature and low carbon/nitrogen polluted water

The denitrification performance of immobilized mixed aerobic denitrifying bacteria (IMADB) was investigated. IMADB displayed strong temperature adaptability under low Carbon/Nitrogen conditions. At 5, 15, and 25 °C, the nitrate removal efficiencies of volcanic rock and polyester fiber sponge immobilized system reached 83.95%-98.25% and 89.71%-98.14%, respectively. The nitrate content removed by the carrier accounted for 41.18%-82.47% of the nitrate content removed by the immobilized system at different temperature, and played a major role in nitrate removal. The lower the temperature, the greater the role of the carrier. At the same temperature, carrier had a relatively higher richness, diversity, and evenness. Network analysis revealed that carrier species, which were positively correlated with nitrate removal efficiency, had the largest OTUs and abundance. Meanwhile, carrier had the widest niche. The total nitrogen removal efficiency of IMADB reached 56.10%-62.31% in the natural water system, highlighting a promising application prospect.

Impact and microbial mechanism of continuous nanoplastics exposure on the urban wastewater treatment process

Contamination by nanoplastics in urban water has aroused increasing concern. The impact of nanoplastic exposure on the wastewater treatment process in the long term is still unclear. This study investigated the effect of continuous nanoplastic exposure (R1:0, R2:10, R3:100, and R4:1000 μg/L) on the nitrification and denitrification processes for over 200 days in a sequencing batch reactor (SBR). The results revealed that nanoplastic exposure does not demonstrate significant inhibition of total nitrogen removal. The ammonia oxidation rate (19.24 ± 0.01 mgN/gMLVSS/h, p < 0.05) and denitrification rate (11.78 ± 0.11 mgN/ gMLVSS/h, p < 0.05) in R4 was significantly lower than the control (R1: 0 μg/L). The maximal reaction velocities of N₂O reduction (Vmax) were improved after long-term exposure to nanoplastics in high concentrations. The R3 demonstrated the highest Vmax value-six times higher than R4 and approximately 20 times higher than R1 and R2. The microbial structure largely varied with the exposure to nanoplastics, where the exposure to a high concentration largely suppressed the nitrifier and selectively enriched the denitrifier. The percentage of the top 20 genera of denitrifiers increased from 31.76% to 63.42%, and the nitrifiers decreased from an initial 12.40% to 2.83% for R4. The predominant genera were found to be Thauera, Azoarcus, and Defluviicoccus in R4 and R3 which indicated their tolerance to nanoplastics. The function prediction results indicated that the membrane transport function was significantly enhanced and the lipid metabolism function was significantly reduced in R4 as compared with the control (R1, p<0.05). This may be attributed to the adsorption of nanoplastics on bacteria. Observation under a scan electronic microscope demonstrated that the nanoplastics were firmly attached to the microbe surface and aggregated in activated sludge at high nanoplastics dosed reactor. These results deepen the understanding of the effect of nanoplastics on the urban wastewater treatment process and provide valuable information for the management of nanoplastic contamination in urban wastewater.

Development of Bio-Electrochemical Reactor for Groundwater Denitrification: Effect of Electric Current and Water Hardness

Nitrate-nitrogen (NO3-N) contaminating groundwater is an environmental issue in many areas, and is difficult to treat by simple processes. A bio-electrochemical reactor (BER) using copper wire and graphite plate was developed to purify the NO3-N-contaminated groundwater. The low (of 10 mA) and high (of 20 mA) electric currents were applied to the BERs, and various influent hardness levels from 20 to 80 mg/L as CaCO3 due to groundwater characteristics were supplied to clarify the total nitrogen removal efficiency and NO3-N removal mechanisms. In the BER-10, the bio-electrochemical reactions caused 85% of total nitrogen to be removed through heterotrophic and autohydrogenotrophic denitrification in the suspended sludge and biofilm. However, the chemical deposit occurring at the cathode from water hardness affected the decreasing denitrification performance; 12.6% of Mg and 8.8% of Ca elements were observed in the biofilm. The enhancement of electrochemical reactions in the BER-20 caused integrating electrochemical and bio-electrochemical reactions; the NO3-N was electrochemically reduced to NO2-N, and it was further biologically reduced to N2. A better total nitrogen removal of 95% was found; although, a larger deposit of Mg (22.8%) and Ca (10.8%) was observed. The relatively low dissolved H2 in the BER-20 confirmed that the deposit affected the decreasing gaseous H2 transfer and inhibition of autohydrogenotrophic denitrification in the suspended sludge. According to the microbial analysis, both heterotrophic and autohydrogenotrophic denitrification were obtained in the suspended sludge of both BERs; Nocadia (26.8%) was the most abundant genus in the BER-10, whereas Flavobacterium (27.1%) and Nocadia (25.0%) were the dominant genera in the BER-20.

Black blooms-induced adaptive responses of sulfate reduction bacteria in a shallow freshwater lake

Decomposing cyanobacterial bloom-induced black blooms been seen as an issue in the management of freshwater ecosystems, but its effect on sulfate-reducing bacteria (SRB) in shallow freshwater lakes is not clear. The objective of this study is to present an in-depth investigation of black bloom effects on the activities and composition of SRB, as well as the interactions between SRB and other bacteria. Water and surface sediments samples were collected from a shallow freshwater lake during black and non-black blooms. Sulfate reduction rates (SRRs) in the water column were determined from the linear regression of sulfate depletion with time. Quantitative real-time polymerase chain reactions (qPCRs), targeting the dsrA gene and Illumina sequencing of 16S rDNA, were used to estimate the SRB population and SRB community structures, respectively. Our data indicate that although a higher abundance of SRB was responsible for the higher SRR in the bottom water (34.09 ± 2.37 nmol mL^-1 day^-1) than in the surface water (14.57 ± 2.91 nmol mL^-1 day^-1) during black blooms, cell-specific sulfate reduction rates (csSRRs) in the distinct water layers were not significantly different (P = 0.95), with the value of approximately 0.017 fmol cell^-1 day^-1. Additionally, Desulfomicrobium and Desulfovibrio were the two main genera of SRB in the water column during black bloom season, while Desulfobulbus, Desulfobacca and Desulfatiglans genera were identified in the sediments of both the black and non-black blooms in genera pools. Each SRB genus preferentially associated with bacteria for specific functions in the bacterial co-occurrence network, regardless of whether black booms occurred or not. These results extend our knowledge on the importance of SRB during black blooms and the adaptation of SRB to environmental changes in freshwater lakes.

Influence of cerium oxide nanoparticles on dairy effluent nitrate and phosphate bioremediation

This study investigated, for the first time, the role of cerium oxide nanoparticles (CeO2 NPs) on dairy effluent nitrate and phosphate bioremediation using different inoculum sources. Two inoculum sources (wastewater and sludge) were obtained from the dairy wastewater treatment plant unit. A culture was prepared to be tested in the treatment of nitrate and phosphate effluent, and the role of CeO2 NPs was checked to be completely efficient after 5 days of incubation. The reduction efficiency of nitrate using sludge as inoculum source was improved up to 89.01% and 68.12% for phosphate compared to control. In the case of using wastewater as an inoculum source, the nitrate reduction was improved up to 83.30% and 87.75% for phosphate compared to control. The bacterial richness showed a significant variance (higher richness) between control and other samples. The optimal concentration of CeO2 NPs for inoculum richness and nitrate and phosphate reduction was (sludge: 1 × 10-10 ppm) and (wastewater: 1 × 10-12 ppm). The results revealed that CeO2 NPs could enhance the microbial growth of different inoculum sources that have a key role in dairy effluent nitrate and phosphate bioremediation.

Distinctive Microbial Processes and Controlling Factors Related to Indirect N2O Emission from Agricultural and Urban Rivers in Taihu Watershed

Inland rivers are hotspots of anthropogenic indirect nitrous oxide (N₂O) emissions, but the underlying microbial processes remain poorly understood. This study measured N₂O fluxes from agricultural and urban rivers in Taihu watershed and investigated the microbial processes driving N₂O production and consumption. The N₂O fluxes were significantly higher in agricultural rivers (140.1 ± 89.1 μmol m^-2 d^-1) than in urban rivers (25.1 ± 27.0 μmol m^-2 d^-1) (p < 0.001). All wind-based models significantly underestimated N₂O flux in urban rivers (p < 0.05) when using the Intergovernmental Panel on Climate Change method because they underestimated the N₂O emission factor (EF_5r). Wind speed and nitrate were the key factors affecting N₂O fluxes in agricultural and urban rivers, respectively. NirK-type denitrifiers produced N₂O in urban river water, while nirS-type denitrifiers consumed N₂O in the sediments of all rivers. Co-occurrence network analysis indicated organics from Microcystis served as electron donors for denitrifiers (dominated by Flavobacterium) in water, while direct interspecies electron transfer between Thiobacillus and methanogens and between Dechloromonas and sulfate-reducing bacteria enhanced N₂O reduction in sediments. This study advances our knowledge on the distinctive microbial processes that determine N₂O emissions in inland rivers and illustrates the need to revise EF_5r for N₂O estimation in urban rivers.

Co-degradation of ofloxacin and its impact on solid phase denitrification with polycaprolactone as carbon source

Solid-phase denitrification has been applied for advanced nitrogen removal from wastewater and can co-degrade emerging pollutants. Fluoroquinolones (FQs), broad-spectral antibiotic, are frequently detected in the effluent of conventional wastewater treatment plants. However, it remains unclear whether solid-phase denitrifying bacteria can remove FQs. Thus, this study investigated the removal capacity of ofloxacin (OFX) as a representative of FQs and the microbial community structures of denitrifying sludge acclimated to polycaprolactone and OFX. The Results indicate that OFX had a negative effect on denitrification performance. OFX was degraded, and a possible pathway was revealed based on ultra-high performance liquid chromatography-quadrupole time-of-flight mass spectrometry. The dominant genera in the acclimated denitrifying sludge were Microbacterium, Simplicispira, Alicycliphilus, Reyranella, Sediminibacterium, Acidovorax and Thermomonas. Moreover, ABC transporters and cytochrome P450, related to multi-drug resistance and drug metabolism, were highly expressed in the acclimated sludge. This study provides novel insights into antibiotics control.

Integrating Microbial Protein Production and Harvest Systems into Pilot-Scale Recirculating Aquaculture Systems for Sustainable Resource Recovery: Linking Nitrogen Recovery to Microbial Communities

In aquaculture, it is important to raise the nitrogen recovery efficiency (NRE) to improve sustainability. To achieve this, recovery of microbial protein (RMP), instead of nitrification/denitrification in conventional wastewater treatment, is a promising approach whose microbiological mechanisms must be characterized. Here, periodic RMP was conducted in an in situ biofloc-based aquaculture system (IBAS) and a separating assimilation reactor-based recirculating aquaculture system (SRAS). Kinetic analysis indicated that a microbial biomass level of 3 g L^-1 was optimal for inorganic N removal, and excess biomass was harvested to improve the NRE. Unlike the IBAS, the SRAS eliminated the fluctuation in water quality caused by the RMP. Periodic RMP significantly increased the NRE to 44-57% by promoting the filamentous bacterium Herpetosiphon and suppressing anaerobic denitrifiers. Aerobic chemoheterotrophy was the main microbial metabolic process for energy. After RMP, nitrate reductase-encoded functional genes (napA and narG) significantly decreased, while nitrite reductase-encoded functional genes, especially nirK, significantly increased. Co-occurrence networks analysis indicated that the cooperation and competition among organic matter degraders, filamentous bacteria, nitrifiers, and denitrifiers determined the microbial protein yield. These results provide fundamental insights into the influence of the RMP on microbial communities and functions, which is important for realizing sustainable aquaculture.

Role of heterotrophic nitrifiers and aerobic denitrifiers in simultaneous nitrification and denitrification process: A non-conventional nitrogen removal pathway in wastewater treatment

Bacterial species capable of performing both nitrification and denitrification in a single vessel under similar conditions have gained significance in the wastewater treatment scenario considering their unique character of performing the above reactions under heterotrophic and aerobic conditions respectively. Such a novel strategy often referred to as simultaneous nitrification and denitrification (SND) has a tremendous potential in dealing with various wastewaters having low C:N content, considering that the process needs very little or no external carbon source and oxygen supply thus adding to its cost-effective and environmentally friendly nature. Though like other microorganisms, heterotrophic nitrifiers and aerobic denitrifiers convert inorganic or organic nitrogen-containing substances into harmless dinitrogen gas in the wastewater, their ecophysiological role in the global nitrogen cycle is still not yet fully understood. Attempts to highlight the role played by the heterotrophic nitrifiers and aerobic denitrifiers in dealing with nitrogen pollution under various environmental operating conditions will help in developing a mechanistic understanding of the SND process to address the issues faced by the traditional methods of aerobic autotrophic nitrification-anaerobic heterotrophic denitrification.