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Giannelli G, Del Vecchio L, Cirlini M, Gozzi M, Gazza L, Galaverna G, Potestio S, Visioli G. Exploring the rhizosphere of perennial wheat: potential for plant growth promotion and biocontrol applications. Sci Rep 2024; 14:22792. [PMID: 39354104 PMCID: PMC11445523 DOI: 10.1038/s41598-024-73818-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Accepted: 09/20/2024] [Indexed: 10/03/2024] Open
Abstract
Perennial grains, which remain productive for multiple years, rather than growing for only one season before harvest, have deep, dense root systems that can support a richness of beneficial microorganisms, which are mostly underexplored. In this work we isolated forty-three bacterial strains associated with the rhizosphere of the OK72 perennial wheat line, developed from a cross between winter common wheat and Thinopyrum ponticum. Identified using 16S rDNA sequencing, these bacteria were assessed for plant growth-promoting traits such as indole-3-acetic acid, siderophores and ACC-deaminase acid production, biofilm formation, and the ability to solubilize phosphate and proteins. Twenty-five strains exhibiting in vitro significant plant growth promoting traits, belong to wheat keystone genera Pseudomonas, Microbacterium, Variovorax, Pedobacter, Dyadobacter, Plantibacter, and Flavobacterium. Seven strains, including Aeromicrobium and Okibacterium genera, were able to promote root growth in a commercial annual wheat cultivar while strains from Pseudomonas genus inhibited the growth of Aspergillus flavus and Fusarium species, using direct antagonism assays. The same strains produced a high amount of 1-undecanol a volatile organic compound, which may aid in suppressing fungal growth. The study highlights the potential of these bacteria to form new commercial consortia, enhancing the health and productivity of annual wheat crops within sustainable agricultural practices.
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Affiliation(s)
| | | | - Martina Cirlini
- Department of Food and Drug, University of Parma, Parma, Italy
| | - Marco Gozzi
- Department of Food and Drug, University of Parma, Parma, Italy
| | - Laura Gazza
- Research Centre for Engineering and Agro-Food Processing, CREA, Rome, Italy
| | | | - Silvia Potestio
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
| | - Giovanna Visioli
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.
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Piatek M, Grassiri B, O'Ferrall LM, Piras AM, Batoni G, Esin S, O'Connor C, Griffith D, Healy AM, Kavanagh K. Quantitative proteomic analysis reveals Ga(III) polypyridyl catecholate complexes disrupt Aspergillus fumigatus mitochondrial function. J Biol Inorg Chem 2024:10.1007/s00775-024-02074-w. [PMID: 39313590 DOI: 10.1007/s00775-024-02074-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Accepted: 09/19/2024] [Indexed: 09/25/2024]
Abstract
Infections caused by the airborne fungal pathogen, Aspergillus fumigatus, are increasing in severity due to growing numbers of immunocompromised individuals and the increasing incidence of antifungal drug resistance, exacerbating treatment challenges. Gallium has proven to be a strong candidate in the fight against microbial pathogens due to its iron-mimicking capability and substitution of Ga(III) in place of Fe(III), disrupting iron-dependent pathways. Since the antimicrobial properties of 2,2'-bipyridine and derivatives have been previously reported, we assessed the in vitro activity and proteomic effects of a recently reported heteroleptic Ga(III) polypyridyl catecholate compound against A. fumigatus. This compound has demonstrated promising growth-inhibition and impact on the A. fumigatus proteome compared to untreated controls. Proteins associated with DNA replication and repair mechanisms along with lipid metabolism and the oxidative stress responses were elevated in abundance compared to control. Crucially, a large number of mitochondrial proteins were reduced in abundance. Respiration is an important source of energy to fuel metabolic processes required for growth, survival and virulence, the disruption of which may be a viable strategy for the treatment of microbial infections.
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Affiliation(s)
- Magdalena Piatek
- Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland.
- SSPC, the Science Foundation Ireland Research Centre for Pharmaceuticals, Limerick, Ireland.
| | - Brunella Grassiri
- Department of Pharmacy, University of Pisa, via Bonanno 33, Pisa, Italy
| | - Lewis More O'Ferrall
- SSPC, the Science Foundation Ireland Research Centre for Pharmaceuticals, Limerick, Ireland
- School of Food Science & Environmental Health, Technological University Dublin, Dublin 7, Ireland
| | - Anna Maria Piras
- Department of Pharmacy, University of Pisa, via Bonanno 33, Pisa, Italy
| | - Giovanna Batoni
- Department of Translational Research and new Technologies in Medicine and Surgery, University of Pisa, via San Zeno 37, Pisa, Italy
| | - Semih Esin
- Department of Translational Research and new Technologies in Medicine and Surgery, University of Pisa, via San Zeno 37, Pisa, Italy
| | - Christine O'Connor
- School of Food Science & Environmental Health, Technological University Dublin, Dublin 7, Ireland
| | - Darren Griffith
- SSPC, the Science Foundation Ireland Research Centre for Pharmaceuticals, Limerick, Ireland
- Department of Chemistry, RCSI, 123 St. Stephens Green, Dublin 2, Ireland
| | - Anne Marie Healy
- SSPC, the Science Foundation Ireland Research Centre for Pharmaceuticals, Limerick, Ireland
- School of Pharmacy and Pharmaceutical Sciences, Trinity College Dublin, Dublin 2, Ireland
| | - Kevin Kavanagh
- Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland.
- SSPC, the Science Foundation Ireland Research Centre for Pharmaceuticals, Limerick, Ireland.
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Kotb E, Al-Abdalall AH, Ababutain I, AlAhmady NF, Aldossary S, Alkhaldi E, Alghamdi AI, Alzahrani HAS, Almuhawish MA, Alshammary MN, Ahmed AA. Anticandidal Activity of a Siderophore from Marine Endophyte Pseudomonas aeruginosa Mgrv7. Antibiotics (Basel) 2024; 13:347. [PMID: 38667023 PMCID: PMC11047651 DOI: 10.3390/antibiotics13040347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 04/05/2024] [Accepted: 04/08/2024] [Indexed: 04/29/2024] Open
Abstract
An endophytic symbiont P. aeruginosa-producing anticandidal siderophore was recovered from mangrove leaves for the first time. Production was optimal in a succinate medium supplemented with 0.4% citric acid and 15 µM iron at pH 7 and 35 °C after 60 h of fermentation. UV spectra of the acidic preparation after purification with Amberlite XAD-4 resin gave a peak at 400 nm, while the neutralized form gave a peak at 360 nm. A prominent peak with RP-HPLC was obtained at RT 18.95 min, confirming its homogeneity. It was pH stable at 5.0-9.5 and thermally stable at elevated temperatures, which encourages the possibility of its application in extreme environments. The minimum inhibitory concentration (MIC) and minimum fungicidal concentration (MFC) against Candida spp. Were in the range of 128 µg/mL and lower. It enhanced the intracellular iron accumulation with 3.2-4.2-fold (as judged by atomic absorption spectrometry) with a subsequent increase in the intracellular antioxidative enzymes SOD and CAT. Furthermore, the malondialdehyde (MDA) concentration due to cellular lipid peroxidation increased to 3.8-fold and 7.3-fold in C. albicans and C. tropicalis, respectively. The scanning electron microscope (SEM) confirmed cellular damage in the form of roughness, malformation, and production of defensive exopolysaccharides and/or proteins after exposure to siderophore. In conclusion, this anticandidal siderophore may be a promising biocontrol, nonpolluting agent against waterborne pathogens and pathogens of the skin. It indirectly kills Candida spp. by ferroptosis and mediation of hyperaccumulation of iron rather than directly attacking the cell targets, which triggers the activation of antioxidative enzymes.
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Affiliation(s)
- Essam Kotb
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Amira H. Al-Abdalall
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Ibtisam Ababutain
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Nada F. AlAhmady
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Sahar Aldossary
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Eida Alkhaldi
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Azzah I. Alghamdi
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Hind A. S. Alzahrani
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
| | - Mashael A. Almuhawish
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
- Basic and Applied Scientific Research Center (BASRC), Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia
| | - Moudhi N. Alshammary
- Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University (IAU), P.O. Box 1982, Dammam 31441, Saudi Arabia; (A.H.A.-A.); (I.A.); (N.F.A.); (A.I.A.); (M.A.A.)
| | - Asmaa A. Ahmed
- Department of Statistics, Faculty of Commerce, Al-Azhar University, Cairo P.O. Box 11751, Egypt
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Kumar R, Singh A, Shukla E, Singh P, Khan A, Singh NK, Srivastava A. Siderophore of plant growth promoting rhizobacterium origin reduces reactive oxygen species mediated injury in Solanum spp. caused by fungal pathogens. J Appl Microbiol 2024; 135:lxae036. [PMID: 38341275 DOI: 10.1093/jambio/lxae036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 02/01/2024] [Accepted: 02/09/2024] [Indexed: 02/12/2024]
Abstract
AIMS The study aims to explore antifungal properties of bacillibactin siderophore produced by the plant growth-promoting rhizobacterium (PGPR) Bacillus subtilis against fungal phytopathogens Alternaria porri and Fusarium equiseti isolated from Solanum lycopersicum and Solanum melongena plants. METHODS AND RESULTS Alternaria porri and F. equiseti were isolated from infected plants of eggplant and tomato, respectively. A plate assay was employed to assess the effect of bacillibactin against the phytopathogens. The antifungal potential of the PGPR was evaluated by estimation of dry fungal biomass, visualization of cellular deformity using compound and scanning electron microscopy, antioxidative enzyme assay and analysis of membrane damage via using lipid peroxidation. Inductively coupled plasma atomic emission spectroscopy (ICP-AES) analysis was employed to investigate changes in intracellular iron content. The impact of bacillibactin on pathogenesis was evaluated by infecting detached leaves of S. lycopersicum and S. melongena plants with both the pathogens and treating the infected leaves with bacillibactin. Leaves were further investigated for ROS accumulation, extent of necrosis and cell death. Our findings revealed significant damage to the hyphal structure of A. porri and F. equiseti following treatment with bacillibactin. Biomass reduction, elevated antioxidative enzyme levels, and membrane damage further substantiated the inhibitory effects of the siderophore on fungal growth. ICP-AES analysis indicates an increase in intracellular iron content suggesting enhanced iron uptake facilitated by bacillibactin. Moreover, application of 1500 µg ml-1 bacillibactin on infected leaves demonstrated a substantial inhibition of ROS accumulation, necrosis, and cell death upon bacillibactin treatment. CONCLUSIONS This study confirms the potent antagonistic activity of bacillibactin against both the phytopathogens A. porri and F. equiseti growth, supporting its potential as a promising biological control agent for fungal plant diseases. Bacillibactin-induced morphological, physiological, and biochemical alterations in the isolated fungi and pathogen-infected leaves highlight the prospects of bacillibactin as an effective and sustainable solution to mitigate economic losses associated with fungal infections in vegetable crops.
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Affiliation(s)
- Ravinsh Kumar
- Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Bihar, Gaya 824236, India
| | - Ashutosh Singh
- Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Bihar, Gaya 824236, India
| | - Ekta Shukla
- Department of Botany, Sunbeam College for Women, U.P., Bhagwanpur, Varanasi 221005, India
| | - Pratika Singh
- Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Bihar, Gaya 824236, India
| | - Azmi Khan
- Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Bihar, Gaya 824236, India
| | - Naveen Kumar Singh
- Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Bihar, Gaya 824236, India
| | - Amrita Srivastava
- Department of Life Science, School of Earth, Biological and Environmental Sciences, Central University of South Bihar, Bihar, Gaya 824236, India
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Ahmed MMA, Tripathi SK, Boudreau PD. Comparative metabolomic profiling of Cupriavidus necator B-4383 revealed production of cupriachelin siderophores, one with activity against Cryptococcus neoformans. Front Chem 2023; 11:1256962. [PMID: 37693169 PMCID: PMC10484230 DOI: 10.3389/fchem.2023.1256962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 08/07/2023] [Indexed: 09/12/2023] Open
Abstract
Cupriavidus necator H16 is known to be a rich source of linear lipopeptide siderophores when grown under iron-depleted conditions; prior literature termed these compounds cupriachelins. These small molecules bear β-hydroxyaspartate moieties that contribute to a photoreduction of iron when bound as ferric cupriachelin. Here, we present structural assignment of cupriachelins from C. necator B-4383 grown under iron limitation. The characterization of B-4383 cupriachelins is based on MS/MS fragmentation analysis, which was confirmed by 1D- and 2D-NMR for the most abundant analog (1). The cupriachelin congeners distinguish these two strains with differences in the preferred lipid tail; however, our rigorous metabolomic investigation also revealed minor analogs with changes in the peptide core, hinting at a potential mechanism by which these siderophores may reduce biologically unavailable ferric iron (4-6). Antifungal screening of the C. necator B-4383 supernatant extract and the isolated cupriachelin analog (1) revealed inhibitory activity against Cryptococcus neoformans, with IC50 values of 16.6 and 3.2 μg/mL, respectively. This antifungal activity could be explained by the critical role of the iron acquisition pathway in the growth and pathogenesis of the C. neoformans fungal pathogen.
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Affiliation(s)
- Mohammed M. A. Ahmed
- Boudreau Lab, Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, United States
- Department of Pharmacognosy, Al-Azhar University, Cairo, Egypt
| | - Siddarth K. Tripathi
- National Center for Natural Products Research, School of Pharmacy, University of Mississippi, Oxford, MS, United States
| | - Paul D. Boudreau
- Boudreau Lab, Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, United States
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Wei S, Hu C, Zhang Y, Lv Y, Zhang S, Zhai H, Hu Y. AnAzf1 acts as a positive regulator of ochratoxin A biosynthesis in Aspergillus niger. Appl Microbiol Biotechnol 2023; 107:2501-2514. [PMID: 36809388 DOI: 10.1007/s00253-023-12404-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 01/18/2023] [Accepted: 01/20/2023] [Indexed: 02/23/2023]
Abstract
Aspergillus niger produces genotoxic and carcinogenic ochratoxin A (OTA) that severely threatens human and animal health. Transcription factor Azf1 is essential in regulating fungal cell development and primary metabolism. However, its effect and mechanism on secondary metabolism are unclear. Here, we characterized and deleted a Azf1 homolog gene, An15g00120 (AnAzf1), in A. niger, which completely blocked OTA production, and repressed the OTA cluster genes, p450, nrps, hal, and bzip at the transcriptional level. The results indicated that AnAzf1 was a positive regulator of OTA biosynthesis. Transcriptome sequencing results showed that the AnAzf1 deletion significantly upregulated antioxidant genes and downregulated oxidative phosphorylation genes. Enzymes involved in reactive oxygen species (ROS) scavenging, including catalase (CAT) and peroxidase (POD) were increased, and the corresponding ROS levels were decreased. Upregulation of genes (cat, catA, hog1, and gfd) in the MAPK pathway and downregulation of genes in iron homeostasis were associated with decreased ROS levels, linking the altered MAPK pathway and iron homeostasis to lower ROS levels caused by AnAzf1 deletion. Additionally, enzymes including complex I (NADH-ubiquinone oxidoreductase), and complex V (ATP synthase), as well as ATP levels, were significantly decreased, indicating impaired oxidative phosphorylation caused by the AnAzf1-deletion. During lower ROS levels and impaired oxidative phosphorylation, OTA was not produced in ∆AnAzf1. Together, these results strongly suggested that AnAzf1 deletion blocked OTA production in A. niger by a synergistic interference of ROS accumulation and oxidative phosphorylation. KEY POINTS: • AnAzf1 positively regulated OTA biosynthesis in A. niger. • Deletion of AnAzf1 decreased ROS levels and impaired oxidative phosphorylation. • An altered MAPK pathway and iron homeostasis were associated with lower ROS levels.
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Affiliation(s)
- Shan Wei
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China
| | - Chaojiang Hu
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China
| | - Yige Zhang
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China
| | - Yangyong Lv
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China
| | - Shuaibing Zhang
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China
| | - Huanchen Zhai
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China
| | - Yuansen Hu
- College of Bioengineering, Henan University of Technology, Zhengzhou, 450001, People's Republic of China.
- Henan Provincial Key Laboratory of Biological Processing and Nutritional Function of Wheat, Zhengzhou, 450001, People's Republic of China.
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Loss of PPR protein Ppr2 induces ferroptosis-like cell death in Schizosaccharomyces pombe. Arch Microbiol 2022; 204:360. [DOI: 10.1007/s00203-022-02970-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 04/30/2022] [Accepted: 05/09/2022] [Indexed: 02/07/2023]
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