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Milicevic KD, Barbeau BL, Lovic DD, Patel AA, Ivanova VO, Antic SD. Physiological features of parvalbumin-expressing GABAergic interneurons contributing to high-frequency oscillations in the cerebral cortex. CURRENT RESEARCH IN NEUROBIOLOGY 2023; 6:100121. [PMID: 38616956 PMCID: PMC11015061 DOI: 10.1016/j.crneur.2023.100121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 11/13/2023] [Accepted: 12/01/2023] [Indexed: 04/16/2024] Open
Abstract
Parvalbumin-expressing (PV+) inhibitory interneurons drive gamma oscillations (30-80 Hz), which underlie higher cognitive functions. In this review, we discuss two groups/aspects of fundamental properties of PV+ interneurons. In the first group (dubbed Before Axon), we list properties representing optimal synaptic integration in PV+ interneurons designed to support fast oscillations. For example: [i] Information can neither enter nor leave the neocortex without the engagement of fast PV+ -mediated inhibition; [ii] Voltage responses in PV+ interneuron dendrites integrate linearly to reduce impact of the fluctuations in the afferent drive; and [iii] Reversed somatodendritic Rm gradient accelerates the time courses of synaptic potentials arriving at the soma. In the second group (dubbed After Axon), we list morphological and biophysical properties responsible for (a) short synaptic delays, and (b) efficient postsynaptic outcomes. For example: [i] Fast-spiking ability that allows PV+ interneurons to outpace other cortical neurons (pyramidal neurons). [ii] Myelinated axon (which is only found in the PV+ subclass of interneurons) to secure fast-spiking at the initial axon segment; and [iii] Inhibitory autapses - autoinhibition, which assures brief biphasic voltage transients and supports postinhibitory rebounds. Recent advent of scientific tools, such as viral strategies to target PV cells and the ability to monitor PV cells via in vivo imaging during behavior, will aid in defining the role of PV cells in the CNS. Given the link between PV+ interneurons and cognition, in the future, it would be useful to carry out physiological recordings in the PV+ cell type selectively and characterize if and how psychiatric and neurological diseases affect initiation and propagation of electrical signals in this cortical sub-circuit. Voltage imaging may allow fast recordings of electrical signals from many PV+ interneurons simultaneously.
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Affiliation(s)
- Katarina D. Milicevic
- University of Connecticut Health, School of Medicine, Institute for Systems Genomics, Farmington, CT, 06030, USA
- University of Belgrade, Faculty of Biology, Center for Laser Microscopy, Belgrade, 11000, Serbia
| | - Brianna L. Barbeau
- University of Connecticut Health, School of Medicine, Institute for Systems Genomics, Farmington, CT, 06030, USA
| | - Darko D. Lovic
- University of Connecticut Health, School of Medicine, Institute for Systems Genomics, Farmington, CT, 06030, USA
- University of Belgrade, Faculty of Biology, Center for Laser Microscopy, Belgrade, 11000, Serbia
| | - Aayushi A. Patel
- University of Connecticut Health, School of Medicine, Institute for Systems Genomics, Farmington, CT, 06030, USA
| | - Violetta O. Ivanova
- University of Connecticut Health, School of Medicine, Institute for Systems Genomics, Farmington, CT, 06030, USA
| | - Srdjan D. Antic
- University of Connecticut Health, School of Medicine, Institute for Systems Genomics, Farmington, CT, 06030, USA
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Haşegan D, Deible M, Earl C, D’Onofrio D, Hazan H, Anwar H, Neymotin SA. Training spiking neuronal networks to perform motor control using reinforcement and evolutionary learning. Front Comput Neurosci 2022; 16:1017284. [PMID: 36249482 PMCID: PMC9563231 DOI: 10.3389/fncom.2022.1017284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 08/31/2022] [Indexed: 11/13/2022] Open
Abstract
Artificial neural networks (ANNs) have been successfully trained to perform a wide range of sensory-motor behaviors. In contrast, the performance of spiking neuronal network (SNN) models trained to perform similar behaviors remains relatively suboptimal. In this work, we aimed to push the field of SNNs forward by exploring the potential of different learning mechanisms to achieve optimal performance. We trained SNNs to solve the CartPole reinforcement learning (RL) control problem using two learning mechanisms operating at different timescales: (1) spike-timing-dependent reinforcement learning (STDP-RL) and (2) evolutionary strategy (EVOL). Though the role of STDP-RL in biological systems is well established, several other mechanisms, though not fully understood, work in concert during learning in vivo. Recreating accurate models that capture the interaction of STDP-RL with these diverse learning mechanisms is extremely difficult. EVOL is an alternative method and has been successfully used in many studies to fit model neural responsiveness to electrophysiological recordings and, in some cases, for classification problems. One advantage of EVOL is that it may not need to capture all interacting components of synaptic plasticity and thus provides a better alternative to STDP-RL. Here, we compared the performance of each algorithm after training, which revealed EVOL as a powerful method for training SNNs to perform sensory-motor behaviors. Our modeling opens up new capabilities for SNNs in RL and could serve as a testbed for neurobiologists aiming to understand multi-timescale learning mechanisms and dynamics in neuronal circuits.
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Affiliation(s)
- Daniel Haşegan
- Vilcek Institute of Graduate Biomedical Sciences, NYU Grossman School of Medicine, New York, NY, United States
| | - Matt Deible
- Department of Computer Science, University of Pittsburgh, Pittsburgh, PA, United States
| | - Christopher Earl
- Department of Computer Science, University of Massachusetts Amherst, Amherst, MA, United States
| | - David D’Onofrio
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, United States
| | - Hananel Hazan
- Allen Discovery Center, Tufts University, Boston, MA, United States
| | - Haroon Anwar
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, United States
| | - Samuel A. Neymotin
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, United States
- Department of Psychiatry, NYU Grossman School of Medicine, New York, NY, United States
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3
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Neymotin SA, Tal I, Barczak A, O'Connell MN, McGinnis T, Markowitz N, Espinal E, Griffith E, Anwar H, Dura-Bernal S, Schroeder CE, Lytton WW, Jones SR, Bickel S, Lakatos P. Detecting Spontaneous Neural Oscillation Events in Primate Auditory Cortex. eNeuro 2022; 9:ENEURO.0281-21.2022. [PMID: 35906065 PMCID: PMC9395248 DOI: 10.1523/eneuro.0281-21.2022] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 05/20/2022] [Accepted: 06/20/2022] [Indexed: 11/21/2022] Open
Abstract
Electrophysiological oscillations in the brain have been shown to occur as multicycle events, with onset and offset dependent on behavioral and cognitive state. To provide a baseline for state-related and task-related events, we quantified oscillation features in resting-state recordings. We developed an open-source wavelet-based tool to detect and characterize such oscillation events (OEvents) and exemplify the use of this tool in both simulations and two invasively-recorded electrophysiology datasets: one from human, and one from nonhuman primate (NHP) auditory system. After removing incidentally occurring event-related potentials (ERPs), we used OEvents to quantify oscillation features. We identified ∼2 million oscillation events, classified within traditional frequency bands: δ, θ, α, β, low γ, γ, and high γ. Oscillation events of 1-44 cycles could be identified in at least one frequency band 90% of the time in human and NHP recordings. Individual oscillation events were characterized by nonconstant frequency and amplitude. This result necessarily contrasts with prior studies which assumed frequency constancy, but is consistent with evidence from event-associated oscillations. We measured oscillation event duration, frequency span, and waveform shape. Oscillations tended to exhibit multiple cycles per event, verifiable by comparing filtered to unfiltered waveforms. In addition to the clear intraevent rhythmicity, there was also evidence of interevent rhythmicity within bands, demonstrated by finding that coefficient of variation of interval distributions and Fano factor (FF) measures differed significantly from a Poisson distribution assumption. Overall, our study provides an easy-to-use tool to study oscillation events at the single-trial level or in ongoing recordings, and demonstrates that rhythmic, multicycle oscillation events dominate auditory cortical dynamics.
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Affiliation(s)
- Samuel A Neymotin
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Department Psychiatry, New York University Grossman School of Medicine, New York, NY 10016
| | - Idan Tal
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Departments of Neurosurgery and Psychiatry, Columbia University College of Physicians and Surgeons, New York, NY 10032
| | - Annamaria Barczak
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
| | - Monica N O'Connell
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
| | - Tammy McGinnis
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
| | - Noah Markowitz
- Department Neurology and Neurosurgery, The Feinstein Institutes for Medical Research at Northwell Health, Manhasset, NY 11030
| | - Elizabeth Espinal
- Department Neurology and Neurosurgery, The Feinstein Institutes for Medical Research at Northwell Health, Manhasset, NY 11030
| | - Erica Griffith
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Department Physiology and Pharmacology, State University of New York Downstate Medical Center, Brooklyn, NY 11203
| | - Haroon Anwar
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
| | - Salvador Dura-Bernal
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Department Physiology and Pharmacology, State University of New York Downstate Medical Center, Brooklyn, NY 11203
| | - Charles E Schroeder
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Departments of Neurosurgery and Psychiatry, Columbia University College of Physicians and Surgeons, New York, NY 10032
| | - William W Lytton
- Department Physiology and Pharmacology, State University of New York Downstate Medical Center, Brooklyn, NY 11203
- Department Neurology, Kings County Hospital Center, Brooklyn, NY 11203
| | - Stephanie R Jones
- Department Neuroscience and Carney Institute for Brain Science, Brown University, Providence, RI 02906
| | - Stephan Bickel
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Department Neurology and Neurosurgery, The Feinstein Institutes for Medical Research at Northwell Health, Manhasset, NY 11030
| | - Peter Lakatos
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962
- Department Psychiatry, New York University Grossman School of Medicine, New York, NY 10016
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Anwar H, Caby S, Dura-Bernal S, D’Onofrio D, Hasegan D, Deible M, Grunblatt S, Chadderdon GL, Kerr CC, Lakatos P, Lytton WW, Hazan H, Neymotin SA. Training a spiking neuronal network model of visual-motor cortex to play a virtual racket-ball game using reinforcement learning. PLoS One 2022; 17:e0265808. [PMID: 35544518 PMCID: PMC9094569 DOI: 10.1371/journal.pone.0265808] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 03/08/2022] [Indexed: 11/18/2022] Open
Abstract
Recent models of spiking neuronal networks have been trained to perform behaviors in static environments using a variety of learning rules, with varying degrees of biological realism. Most of these models have not been tested in dynamic visual environments where models must make predictions on future states and adjust their behavior accordingly. The models using these learning rules are often treated as black boxes, with little analysis on circuit architectures and learning mechanisms supporting optimal performance. Here we developed visual/motor spiking neuronal network models and trained them to play a virtual racket-ball game using several reinforcement learning algorithms inspired by the dopaminergic reward system. We systematically investigated how different architectures and circuit-motifs (feed-forward, recurrent, feedback) contributed to learning and performance. We also developed a new biologically-inspired learning rule that significantly enhanced performance, while reducing training time. Our models included visual areas encoding game inputs and relaying the information to motor areas, which used this information to learn to move the racket to hit the ball. Neurons in the early visual area relayed information encoding object location and motion direction across the network. Neuronal association areas encoded spatial relationships between objects in the visual scene. Motor populations received inputs from visual and association areas representing the dorsal pathway. Two populations of motor neurons generated commands to move the racket up or down. Model-generated actions updated the environment and triggered reward or punishment signals that adjusted synaptic weights so that the models could learn which actions led to reward. Here we demonstrate that our biologically-plausible learning rules were effective in training spiking neuronal network models to solve problems in dynamic environments. We used our models to dissect the circuit architectures and learning rules most effective for learning. Our model shows that learning mechanisms involving different neural circuits produce similar performance in sensory-motor tasks. In biological networks, all learning mechanisms may complement one another, accelerating the learning capabilities of animals. Furthermore, this also highlights the resilience and redundancy in biological systems.
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Affiliation(s)
- Haroon Anwar
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Simon Caby
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Salvador Dura-Bernal
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
- Dept. Physiology & Pharmacology, State University of New York Downstate, Brooklyn, New York, United States of America
| | - David D’Onofrio
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Daniel Hasegan
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Matt Deible
- University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
| | - Sara Grunblatt
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - George L. Chadderdon
- Dept. Physiology & Pharmacology, State University of New York Downstate, Brooklyn, New York, United States of America
| | - Cliff C. Kerr
- Dept Physics, University of Sydney, Sydney, Australia
- Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, Washington, United States of America
| | - Peter Lakatos
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
- Dept. Psychiatry, NYU Grossman School of Medicine, New York, New York, United States of America
| | - William W. Lytton
- Dept. Physiology & Pharmacology, State University of New York Downstate, Brooklyn, New York, United States of America
- Dept Neurology, Kings County Hospital Center, Brooklyn, New York, United States of America
| | - Hananel Hazan
- Dept of Biology, Tufts University, Medford, Massachusetts, United States of America
| | - Samuel A. Neymotin
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
- Dept. Psychiatry, NYU Grossman School of Medicine, New York, New York, United States of America
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5
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Salimpour Y, Nayak A, Naydanova E, Kim MJ, Hwang BY, Mills KA, Kudela P, Anderson WS. Phase-dependent Stimulation for Modulating Phase-amplitude Coupling: A Computational Modeling Approach. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:3590-3593. [PMID: 33018779 DOI: 10.1109/embc44109.2020.9175966] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Phase-amplitude coupling (PAC), in which the amplitude of a faster neural oscillation couples to the phase of a slower rhythm, is one of the most common representations of complex neuronal rhythmic activities. In a healthy brain, PAC accompanies cognitive function, and abnormal patterns of PAC have been linked to several neurological disorders. Among the various brain neuromodulation techniques, phase-dependent stimulation has a strong potential to modulate PAC levels. In this study, we utilize a computational model in the NEURON environment based on a detailed mathematical model of neuronal populations, consisting of networks with both excitatory and inhibitory neurons, to simulate PAC generation. The model was then used to investigate the modulatory effects of phase-dependent stimulation on the generated PAC. Simulated data from the model shows that stimulation locked to the phase of slower rhythms increased PAC level during stimulation. These results demonstrate the capacity of phase-dependent stimulation to modulate PAC, which could allow for applications in the treatment of neurological disorders associated with abnormal PAC, such as Parkinson's disease.Clinical Relevance- Analyzing the origins of neuronal PAC and developing a brain stimulation technique for modulating the level of PAC can facilitate the development of novel treatment methods for neurological disorders associated with abnormal cross-frequency coupling.
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Dependency analysis of frequency and strength of gamma oscillations on input difference between excitatory and inhibitory neurons. Cogn Neurodyn 2020; 15:501-515. [PMID: 34040674 DOI: 10.1007/s11571-020-09622-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Revised: 07/19/2020] [Accepted: 07/22/2020] [Indexed: 10/23/2022] Open
Abstract
It has been found that gamma oscillations and the oscillation frequencies are regulated by the properties of external stimuli in many biology experimental researches. To unveil the underlying mechanism, firstly, we reproduced the experimental observations in an excitatory/inhibitory (E/I) neuronal network that the oscillation became stronger and moved to a higher frequency band (gamma band) with the increasing of the input difference between E/I neurons. Secondly, we found that gamma oscillation was induced by the unbalance between positive and negative synaptic currents, which was caused by the input difference between E/I neurons. When this input difference became greater, there would be a stronger gamma oscillation (i.e., a higher peak power in the power spectrum of the population activity of neurons). Further investigation revealed that the frequency dependency of gamma oscillation on the input difference between E/I neurons could be explained by the well-known mechanisms of inter-neuron-gamma (ING) and pyramidal-interneuron-gamma (PING). Finally, we derived mathematical analysis to verify the mechanism of frequency regulations and the results were consistent with the simulation results. The results of this paper provide a possible mechanism for the external stimuli-regulated gamma oscillations.
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7
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Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GMG, Lytton WW. NetPyNE, a tool for data-driven multiscale modeling of brain circuits. eLife 2019; 8:e44494. [PMID: 31025934 PMCID: PMC6534378 DOI: 10.7554/elife.44494] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 04/25/2019] [Indexed: 12/22/2022] Open
Abstract
Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing and disparate experimental datasets at multiple scales. The NetPyNE tool (www.netpyne.org) provides both programmatic and graphical interfaces to develop data-driven multiscale network models in NEURON. NetPyNE clearly separates model parameters from implementation code. Users provide specifications at a high level via a standardized declarative language, for example connectivity rules, to create millions of cell-to-cell connections. NetPyNE then enables users to generate the NEURON network, run efficiently parallelized simulations, optimize and explore network parameters through automated batch runs, and use built-in functions for visualization and analysis - connectivity matrices, voltage traces, spike raster plots, local field potentials, and information theoretic measures. NetPyNE also facilitates model sharing by exporting and importing standardized formats (NeuroML and SONATA). NetPyNE is already being used to teach computational neuroscience students and by modelers to investigate brain regions and phenomena.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology & PharmacologyState University of New York Downstate Medical CenterBrooklynUnited States
| | - Benjamin A Suter
- Department of PhysiologyNorthwestern UniversityChicagoUnited States
| | - Padraig Gleeson
- Department of Neuroscience, Physiology and PharmacologyUniversity College LondonLondonUnited Kingdom
| | | | | | - Facundo Rodriguez
- Department of Physiology & PharmacologyState University of New York Downstate Medical CenterBrooklynUnited States
- MetaCell LLCBostonUnited States
| | - David J Kedziora
- Complex Systems Group, School of PhysicsUniversity of SydneySydneyAustralia
| | - George L Chadderdon
- Department of Physiology & PharmacologyState University of New York Downstate Medical CenterBrooklynUnited States
| | - Cliff C Kerr
- Complex Systems Group, School of PhysicsUniversity of SydneySydneyAustralia
| | - Samuel A Neymotin
- Department of Physiology & PharmacologyState University of New York Downstate Medical CenterBrooklynUnited States
- Nathan Kline Institute for Psychiatric ResearchOrangeburgUnited States
| | - Robert A McDougal
- Department of Neuroscience and School of MedicineYale UniversityNew HavenUnited States
- Center for Medical InformaticsYale UniversityNew HavenUnited States
| | - Michael Hines
- Department of Neuroscience and School of MedicineYale UniversityNew HavenUnited States
| | | | - William W Lytton
- Department of Physiology & PharmacologyState University of New York Downstate Medical CenterBrooklynUnited States
- Department of NeurologyKings County HospitalBrooklynUnited States
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8
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Salimpour Y, Anderson WS. Cross-Frequency Coupling Based Neuromodulation for Treating Neurological Disorders. Front Neurosci 2019; 13:125. [PMID: 30846925 PMCID: PMC6393401 DOI: 10.3389/fnins.2019.00125] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Accepted: 02/04/2019] [Indexed: 11/22/2022] Open
Abstract
Synchronous, rhythmic changes in the membrane polarization of neurons form oscillations in local field potentials. It is hypothesized that high-frequency brain oscillations reflect local cortical information processing, and low-frequency brain oscillations project information flow across larger cortical networks. This provides complex forms of information transmission due to interactions between oscillations at different frequency bands, which can be rendered with cross-frequency coupling (CFC) metrics. Phase-amplitude coupling (PAC) is one of the most common representations of the CFC. PAC reflects the coupling of the phase of oscillations in a specific frequency band to the amplitude of oscillations in another frequency band. In a normal brain, PAC accompanies multi-item working memory in the hippocampus, and changes in PAC have been associated with diseases such as schizophrenia, obsessive-compulsive disorder (OCD), Alzheimer disease (AD), epilepsy, and Parkinson's disease (PD). The purpose of this article is to explore CFC across the central nervous system and demonstrate its correlation to neurological disorders. Results from previously published studies are reviewed to explore the significant role of CFC in large neuronal network communication and its abnormal behavior in neurological disease. Specifically, the association of effective treatment in PD such as dopaminergic medication and deep brain stimulation with PAC changes is described. Lastly, CFC analysis of the electrocorticographic (ECoG) signals recorded from the motor cortex of a Parkinson's disease patient and the parahippocampal gyrus of an epilepsy patient are demonstrated. This information taken together illuminates possible roles of CFC in the nervous system and its potential as a therapeutic target in disease states. This will require new neural interface technologies such as phase-dependent stimulation triggered by PAC changes, for the accurate recording, monitoring, and modulation of the CFC signal.
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Affiliation(s)
- Yousef Salimpour
- Functional Neurosurgery Laboratory, Department of Neurosurgery, Johns Hopkins School of Medicine, Baltimore, MD, United States
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Dasgupta M, Bhattacharya BS, Nagar A. Linking Brainstem Cholinergic Input to Thalamocortical Circuitry. ADVANCES IN INTELLIGENT SYSTEMS AND COMPUTING 2019. [DOI: 10.1007/978-981-13-1592-3_29] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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10
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Automated Metadata Suggestion During Repository Submission. Neuroinformatics 2018; 17:361-371. [PMID: 30382537 DOI: 10.1007/s12021-018-9403-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
Knowledge discovery via an informatics resource is constrained by the completeness of the resource, both in terms of the amount of data it contains and in terms of the metadata that exists to describe the data. Increasing completeness in one of these categories risks reducing completeness in the other because manually curating metadata is time consuming and is restricted by familiarity with both the data and the metadata annotation scheme. The diverse interests of a research community may drive a resource to have hundreds of metadata tags with few examples for each making it challenging for humans or machine learning algorithms to learn how to assign metadata tags properly. We demonstrate with ModelDB, a computational neuroscience model discovery resource, that using manually-curated regular-expression based rules can overcome this challenge by parsing existing texts from data providers during user data entry to suggest metadata annotations and prompt them to suggest other related metadata annotations rather than leaving the task to a curator. In the ModelDB implementation, analyzing the abstract identified 6.4 metadata tags per abstract at 79% precision. Using the full-text produced higher recall with low precision (41%), and the title alone produced few (1.3) metadata annotations per entry; we thus recommend data providers use their abstract during upload. Grouping the possible metadata annotations into categories (e.g. cell type, biological topic) revealed that precision and recall for the different text sources varies by category. Given this proof-of-concept, other bioinformatics resources can likewise improve the quality of their metadata by adopting our approach of prompting data uploaders with relevant metadata at the minimal cost of formalizing rules for each potential metadata annotation.
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11
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Antic SD, Hines M, Lytton WW. Embedded ensemble encoding hypothesis: The role of the "Prepared" cell. J Neurosci Res 2018; 96:1543-1559. [PMID: 29633330 DOI: 10.1002/jnr.24240] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2017] [Revised: 03/10/2018] [Accepted: 03/12/2018] [Indexed: 01/08/2023]
Abstract
We here reconsider current theories of neural ensembles in the context of recent discoveries about neuronal dendritic physiology. The key physiological observation is that the dendritic plateau potential produces sustained depolarization of the cell body (amplitude 10-20 mV, duration 200-500 ms). Our central hypothesis is that synaptically-evoked dendritic plateau potentials lead to a prepared state of a neuron that favors spike generation. The plateau both depolarizes the cell toward spike threshold, and provides faster response to inputs through a shortened membrane time constant. As a result, the speed of synaptic-to-action potential (AP) transfer is faster during the plateau phase. Our hypothesis relates the changes from "resting" to "depolarized" neuronal state to changes in ensemble dynamics and in network information flow. The plateau provides the Prepared state (sustained depolarization of the cell body) with a time window of 200-500 ms. During this time, a neuron can tune into ongoing network activity and synchronize spiking with other neurons to provide a coordinated Active state (robust firing of somatic APs), which would permit "binding" of signals through coordination of neural activity across a population. The transient Active ensemble of neurons is embedded in the longer-lasting Prepared ensemble of neurons. We hypothesize that "embedded ensemble encoding" may be an important organizing principle in networks of neurons.
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Affiliation(s)
- Srdjan D Antic
- Department of Neuroscience, Institute for Systems Genomics, Stem Cell Institute, UConn Health, Farmington, Connecticut
| | - Michael Hines
- Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut
| | - William W Lytton
- Physiology and Pharmacology, Neurology, Biomedical Engineering, SUNY Downstate Medical Center, Brooklyn, New York.,Department of Neurology, Kings County Hospital, Brooklyn, New York
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12
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Angulo SL, Orman R, Neymotin SA, Liu L, Buitrago L, Cepeda-Prado E, Stefanov D, Lytton WW, Stewart M, Small SA, Duff KE, Moreno H. Tau and amyloid-related pathologies in the entorhinal cortex have divergent effects in the hippocampal circuit. Neurobiol Dis 2017; 108:261-276. [PMID: 28860088 DOI: 10.1016/j.nbd.2017.08.015] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Revised: 08/09/2017] [Accepted: 08/26/2017] [Indexed: 02/02/2023] Open
Abstract
The entorhinal cortex (EC) is affected early in Alzheimer's disease, an illness defined by a co-occurrence of tau and amyloid-related pathologies. How the co-occurrence of these pathologies in the EC affects the hippocampal circuit remains unknown. Here we address this question by performing electrophysiological analyses of the EC circuit in mice that express mutant human amyloid precursor protein (hAPP) or tau (hTau), or both in the EC. We show that the alterations in the hippocampal circuit are divergent, with hAPP increasing but hTau decreasing neuronal/circuit excitability. Most importantly, mice co-expressing hAPP and hTau show that hTau has a dominant effect, dampening the excitatory effects of hAPP. Additionally, compensatory synaptic downscaling, in response to increased excitability in EC was observed in subicular neurons of hAPP mice. Based on simulations, we propose that EC interneuron pruning can account for both EC hyperexcitability and subicular synaptic downscaling found in mice expressing hAPP.
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Affiliation(s)
- S L Angulo
- Department of Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States; The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - R Orman
- The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - S A Neymotin
- Department of Neuroscience, Brown University, Providence, RI 02912, United States
| | - L Liu
- Department of Pathology, Cell Biology, Columbia University Medical Center, NY 10032, United States; Department of Psychiatry, Columbia University Medical Center, NY 10032, United States
| | - L Buitrago
- Department of Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States; The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - E Cepeda-Prado
- Department of Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States; The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - D Stefanov
- Scientific Computer Center, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - W W Lytton
- Department of Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States; The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - M Stewart
- The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States
| | - S A Small
- Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University, NY 10032, United States; Department of Neurology, Columbia University Medical Center, NY 10032, United States
| | - K E Duff
- Department of Pathology, Cell Biology, Columbia University Medical Center, NY 10032, United States; Taub Institute for Research on Alzheimer's Disease and the Aging Brain, Columbia University, NY 10032, United States; Department of Psychiatry, Columbia University Medical Center, NY 10032, United States
| | - H Moreno
- Department of Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States; The Robert F. Furchgott Center for Neural and Behavioral Science, Department of Physiology/Pharmacology, SUNY Downstate Medical Center, Brooklyn, NY 11203, United States.
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Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife 2016; 5:e18566. [PMID: 28009257 DOI: 10.7554/elife.18566.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2016] [Accepted: 12/15/2016] [Indexed: 05/25/2023] Open
Abstract
The hippocampal theta rhythm plays important roles in information processing; however, the mechanisms of its generation are not well understood. We developed a data-driven, supercomputer-based, full-scale (1:1) model of the rodent CA1 area and studied its interneurons during theta oscillations. Theta rhythm with phase-locked gamma oscillations and phase-preferential discharges of distinct interneuronal types spontaneously emerged from the isolated CA1 circuit without rhythmic inputs. Perturbation experiments identified parvalbumin-expressing interneurons and neurogliaform cells, as well as interneuronal diversity itself, as important factors in theta generation. These simulations reveal new insights into the spatiotemporal organization of the CA1 circuit during theta oscillations.
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Affiliation(s)
- Marianne J Bezaire
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
| | - Ivan Raikov
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
- Department of Neurosurgery, Stanford University, Stanford, United States
| | - Kelly Burk
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
| | - Dhrumil Vyas
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
| | - Ivan Soltesz
- Department of Neurosurgery, Stanford University, Stanford, United States
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Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife 2016; 5. [PMID: 28009257 PMCID: PMC5313080 DOI: 10.7554/elife.18566] [Citation(s) in RCA: 117] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2016] [Accepted: 12/15/2016] [Indexed: 12/16/2022] Open
Abstract
The hippocampal theta rhythm plays important roles in information processing; however, the mechanisms of its generation are not well understood. We developed a data-driven, supercomputer-based, full-scale (1:1) model of the rodent CA1 area and studied its interneurons during theta oscillations. Theta rhythm with phase-locked gamma oscillations and phase-preferential discharges of distinct interneuronal types spontaneously emerged from the isolated CA1 circuit without rhythmic inputs. Perturbation experiments identified parvalbumin-expressing interneurons and neurogliaform cells, as well as interneuronal diversity itself, as important factors in theta generation. These simulations reveal new insights into the spatiotemporal organization of the CA1 circuit during theta oscillations. DOI:http://dx.doi.org/10.7554/eLife.18566.001
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Affiliation(s)
- Marianne J Bezaire
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
| | - Ivan Raikov
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States.,Department of Neurosurgery, Stanford University, Stanford, United States
| | - Kelly Burk
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
| | - Dhrumil Vyas
- Department of Anatomy and Neurobiology, University of California, Irvine, Irvine, United States
| | - Ivan Soltesz
- Department of Neurosurgery, Stanford University, Stanford, United States
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15
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Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Front Pharmacol 2016; 7:157. [PMID: 27378922 PMCID: PMC4906029 DOI: 10.3389/fphar.2016.00157] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Accepted: 05/30/2016] [Indexed: 12/20/2022] Open
Abstract
A large number of physiomic pathologies can produce hyperexcitability in cortex. Depending on severity, cortical hyperexcitability may manifest clinically as a hyperkinetic movement disorder or as epilpesy. We focus here on dystonia, a movement disorder that produces involuntary muscle contractions and involves pathology in multiple brain areas including basal ganglia, thalamus, cerebellum, and sensory and motor cortices. Most research in dystonia has focused on basal ganglia, while much pharmacological treatment is provided directly at muscles to prevent contraction. Motor cortex is another potential target for therapy that exhibits pathological dynamics in dystonia, including heightened activity and altered beta oscillations. We developed a multiscale model of primary motor cortex, ranging from molecular, up to cellular, and network levels, containing 1715 compartmental model neurons with multiple ion channels and intracellular molecular dynamics. We wired the model based on electrophysiological data obtained from mouse motor cortex circuit mapping experiments. We used the model to reproduce patterns of heightened activity seen in dystonia by applying independent random variations in parameters to identify pathological parameter sets. These models demonstrated degeneracy, meaning that there were many ways of obtaining the pathological syndrome. There was no single parameter alteration which would consistently distinguish pathological from physiological dynamics. At higher dimensions in parameter space, we were able to use support vector machines to distinguish the two patterns in different regions of space and thereby trace multitarget routes from dystonic to physiological dynamics. These results suggest the use of in silico models for discovery of multitarget drug cocktails.
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Affiliation(s)
- Samuel A Neymotin
- Department Physiology and Pharmacology, SUNY Downstate Medical Center, State University of New YorkBrooklyn, NY, USA; Department Neuroscience, Yale University School of MedicineNew Haven, CT, USA
| | - Salvador Dura-Bernal
- Department Physiology and Pharmacology, SUNY Downstate Medical Center, State University of New York Brooklyn, NY, USA
| | - Peter Lakatos
- Nathan S. Kline Institute for Psychiatric Research Orangeburg, NY, USA
| | - Terence D Sanger
- Department Biomedical Engineering, University of Southern CaliforniaLos Angeles, CA, USA; Division Neurology, Child Neurology and Movement Disorders, Children's Hospital Los AngelesLos Angeles, CA, USA
| | - William W Lytton
- Department Physiology and Pharmacology, SUNY Downstate Medical Center, State University of New YorkBrooklyn, NY, USA; Department Neurology, SUNY Downstate Medical CenterBrooklyn, NY, USA; Department Neurology, Kings County Hospital CenterBrooklyn, NY, USA; The Robert F. Furchgott Center for Neural and Behavioral ScienceBrooklyn, NY, US
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16
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Chehelcheraghi M, Nakatani C, Steur E, van Leeuwen C. A neural mass model of phase-amplitude coupling. BIOLOGICAL CYBERNETICS 2016; 110:171-192. [PMID: 27241189 DOI: 10.1007/s00422-016-0687-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 05/01/2016] [Indexed: 06/05/2023]
Abstract
Brain activity shows phase-amplitude coupling between its slow and fast oscillatory components. We study phase-amplitude coupling as recorded at individual sites, using a modified version of the well-known Wendling neural mass model. To the population of fast inhibitory interneurons of this model, we added external modulatory input and dynamic self-feedback. These two modifications together are sufficient to let the inhibitory population serve as a limit-cycle oscillator, with frequency characteristics comparable to the beta and gamma bands. The frequency and power of these oscillations can be tuned through the time constant of the dynamic and modulatory input. Alpha band activity is generated, as is usual in such models, as a result of interactions of pyramidal neurons and a population of slow inhibitory interneurons. The slow inhibitory population activity directly influences the fast oscillations via the synaptic gain between slow and fast inhibitory populations. As a result, the amplitude envelope of the fast oscillation is coupled to the phase of the slow activity; this result is consistent with the notion that phase-amplitude coupling is effectuated by interactions between inhibitory interneurons.
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Affiliation(s)
| | - Chie Nakatani
- Brain and Cognition Unit, KU Leuven, Leuven, Belgium
| | - Erik Steur
- Brain and Cognition Unit, KU Leuven, Leuven, Belgium
- Dynamics and Control Group, Department of Mechanical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
| | - Cees van Leeuwen
- Brain and Cognition Unit, KU Leuven, Leuven, Belgium
- Center for Cognitive Science, TU Kaiserslautern, Kaiserslautern, Germany
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17
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Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW. Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience 2016; 316:344-66. [PMID: 26746357 PMCID: PMC4724569 DOI: 10.1016/j.neuroscience.2015.12.043] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Revised: 12/16/2015] [Accepted: 12/21/2015] [Indexed: 01/08/2023]
Abstract
Neuronal persistent activity has been primarily assessed in terms of electrical mechanisms, without attention to the complex array of molecular events that also control cell excitability. We developed a multiscale neocortical model proceeding from the molecular to the network level to assess the contributions of calcium (Ca(2+)) regulation of hyperpolarization-activated cyclic nucleotide-gated (HCN) channels in providing additional and complementary support of continuing activation in the network. The network contained 776 compartmental neurons arranged in the cortical layers, connected using synapses containing AMPA/NMDA/GABAA/GABAB receptors. Metabotropic glutamate receptors (mGluR) produced inositol triphosphate (IP3) which caused the release of Ca(2+) from endoplasmic reticulum (ER) stores, with reuptake by sarco/ER Ca(2+)-ATP-ase pumps (SERCA), and influence on HCN channels. Stimulus-induced depolarization led to Ca(2+) influx via NMDA and voltage-gated Ca(2+) channels (VGCCs). After a delay, mGluR activation led to ER Ca(2+) release via IP3 receptors. These factors increased HCN channel conductance and produced firing lasting for ∼1min. The model displayed inter-scale synergies among synaptic weights, excitation/inhibition balance, firing rates, membrane depolarization, Ca(2+) levels, regulation of HCN channels, and induction of persistent activity. The interaction between inhibition and Ca(2+) at the HCN channel nexus determined a limited range of inhibition strengths for which intracellular Ca(2+) could prepare population-specific persistent activity. Interactions between metabotropic and ionotropic inputs to the neuron demonstrated how multiple pathways could contribute in a complementary manner to persistent activity. Such redundancy and complementarity via multiple pathways is a critical feature of biological systems. Mediation of activation at different time scales, and through different pathways, would be expected to protect against disruption, in this case providing stability for persistent activity.
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Affiliation(s)
- S A Neymotin
- Department of Physiology & Pharmacology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA.
| | - R A McDougal
- Department of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA.
| | - A S Bulanova
- Department of Physiology & Pharmacology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA.
| | - M Zeki
- Department of Mathematics, Zirve University, 27260 Gaziantep, Turkey.
| | - P Lakatos
- Nathan Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962, USA.
| | - D Terman
- Department of Mathematics, The Ohio State University, 231 W 18th Avenue, Columbus, OH 43210, USA.
| | - M L Hines
- Department of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA.
| | - W W Lytton
- Department of Physiology & Pharmacology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department of Neurology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department Neurology, Kings County Hospital Center, 451 Clarkson Avenue, Brooklyn, NY 11203, USA.
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Dura-Bernal S, Li K, Neymotin SA, Francis JT, Principe JC, Lytton WW. Restoring Behavior via Inverse Neurocontroller in a Lesioned Cortical Spiking Model Driving a Virtual Arm. Front Neurosci 2016; 10:28. [PMID: 26903796 PMCID: PMC4746359 DOI: 10.3389/fnins.2016.00028] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Accepted: 01/25/2016] [Indexed: 01/08/2023] Open
Abstract
Neural stimulation can be used as a tool to elicit natural sensations or behaviors by modulating neural activity. This can be potentially used to mitigate the damage of brain lesions or neural disorders. However, in order to obtain the optimal stimulation sequences, it is necessary to develop neural control methods, for example by constructing an inverse model of the target system. For real brains, this can be very challenging, and often unfeasible, as it requires repeatedly stimulating the neural system to obtain enough probing data, and depends on an unwarranted assumption of stationarity. By contrast, detailed brain simulations may provide an alternative testbed for understanding the interactions between ongoing neural activity and external stimulation. Unlike real brains, the artificial system can be probed extensively and precisely, and detailed output information is readily available. Here we employed a spiking network model of sensorimotor cortex trained to drive a realistic virtual musculoskeletal arm to reach a target. The network was then perturbed, in order to simulate a lesion, by either silencing neurons or removing synaptic connections. All lesions led to significant behvaioral impairments during the reaching task. The remaining cells were then systematically probed with a set of single and multiple-cell stimulations, and results were used to build an inverse model of the neural system. The inverse model was constructed using a kernel adaptive filtering method, and was used to predict the neural stimulation pattern required to recover the pre-lesion neural activity. Applying the derived neurostimulation to the lesioned network improved the reaching behavior performance. This work proposes a novel neurocontrol method, and provides theoretical groundwork on the use biomimetic brain models to develop and evaluate neurocontrollers that restore the function of damaged brain regions and the corresponding motor behaviors.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA
| | - Kan Li
- Department of Electrical and Computer Engineering, University of Florida Gainesville, FL, USA
| | - Samuel A Neymotin
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA
| | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate Medical CenterBrooklyn, NY, USA; BME Cullen College of Engineering, University of HoustonHouston, TX, USA
| | - Jose C Principe
- Department of Electrical and Computer Engineering, University of Florida Gainesville, FL, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate Medical CenterBrooklyn, NY, USA; Department of Neurology, State University of New York Downstate Medical CenterBrooklyn, NY, USA; Department of Neurology, Kings County Hospital CenterBrooklyn, NY, USA
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Lee G, Matsunaga A, Dura-Bernal S, Zhang W, Lytton WW, Francis JT, Fortes JA. Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. ACTA ACUST UNITED AC 2015; 3:1-23. [PMID: 26702394 PMCID: PMC4685709 DOI: 10.1186/s40244-014-0012-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Development of more sophisticated implantable brain-machine interface (BMI) will require both interpretation of the neurophysiological data being measured and subsequent determination of signals to be delivered back to the brain. Computational models are the heart of the machine of BMI and therefore an essential tool in both of these processes. One approach is to utilize brain biomimetic models (BMMs) to develop and instantiate these algorithms. These then must be connected as hybrid systems in order to interface the BMM with in vivo data acquisition devices and prosthetic devices. The combined system then provides a test bed for neuroprosthetic rehabilitative solutions and medical devices for the repair and enhancement of damaged brain. We propose here a computer network-based design for this purpose, detailing its internal modules and data flows. We describe a prototype implementation of the design, enabling interaction between the Plexon Multichannel Acquisition Processor (MAP) server, a commercial tool to collect signals from microelectrodes implanted in a live subject and a BMM, a NEURON-based model of sensorimotor cortex capable of controlling a virtual arm. The prototype implementation supports an online mode for real-time simulations, as well as an offline mode for data analysis and simulations without real-time constraints, and provides binning operations to discretize continuous input to the BMM and filtering operations for dealing with noise. Evaluation demonstrated that the implementation successfully delivered monkey spiking activity to the BMM through LAN environments, respecting real-time constraints.
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Affiliation(s)
- Giljae Lee
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA
| | - Andréa Matsunaga
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA
| | - Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA
| | - Wenjie Zhang
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Department of Neurology, State University New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Department of Neurology, Kings County Hospital, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Joint Program in Biomedical Engineering at Polytechnic Institute of New York University and State University of New York Downstate, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Program in Neural and Behavioral Science at State University of New York Downstate, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA ; The Robert F. Furchgott Center for Neural & Behavioral Science, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA
| | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Joint Program in Biomedical Engineering at Polytechnic Institute of New York University and State University of New York Downstate, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Program in Neural and Behavioral Science at State University of New York Downstate, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA ; The Robert F. Furchgott Center for Neural & Behavioral Science, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA
| | - José Ab Fortes
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA ; Department of Computer and Information Science and Engineering, University of Florida, P.O. Box 116120, E301 CSE Building, Gainesville 32611, FL, USA
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Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW. Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Front Neurorobot 2015; 9:13. [PMID: 26635598 PMCID: PMC4658435 DOI: 10.3389/fnbot.2015.00013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Accepted: 11/09/2015] [Indexed: 11/13/2022] Open
Abstract
Embedding computational models in the physical world is a critical step towards constraining their behavior and building practical applications. Here we aim to drive a realistic musculoskeletal arm model using a biomimetic cortical spiking model, and make a robot arm reproduce the same trajectories in real time. Our cortical model consisted of a 3-layered cortex, composed of several hundred spiking model-neurons, which display physiologically realistic dynamics. We interconnected the cortical model to a two-joint musculoskeletal model of a human arm, with realistic anatomical and biomechanical properties. The virtual arm received muscle excitations from the neuronal model, and fed back proprioceptive information, forming a closed-loop system. The cortical model was trained using spike timing-dependent reinforcement learning to drive the virtual arm in a 2D reaching task. Limb position was used to simultaneously control a robot arm using an improved network interface. Virtual arm muscle activations responded to motoneuron firing rates, with virtual arm muscles lengths encoded via population coding in the proprioceptive population. After training, the virtual arm performed reaching movements which were smoother and more realistic than those obtained using a simplistic arm model. This system provided access to both spiking network properties and to arm biophysical properties, including muscle forces. The use of a musculoskeletal virtual arm and the improved control system allowed the robot arm to perform movements which were smoother than those reported in our previous paper using a simplistic arm. This work provides a novel approach consisting of bidirectionally connecting a cortical model to a realistic virtual arm, and using the system output to drive a robotic arm in real time. Our techniques are applicable to the future development of brain neuroprosthetic control systems, and may enable enhanced brain-machine interfaces with the possibility for finer control of limb prosthetics.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA
| | | | - Samuel A Neymotin
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA
| | | | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; The Robert Furchgott Center for Neural and Behavioral Science, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Joint Graduate Program in Biomedical Engineering, State University of New York Downstate and Polytechnic Institute of New York University Brooklyn, NY, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; The Robert Furchgott Center for Neural and Behavioral Science, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Joint Graduate Program in Biomedical Engineering, State University of New York Downstate and Polytechnic Institute of New York University Brooklyn, NY, USA ; Department of Neurology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Department of Neurology, Kings County Hospital Center Brooklyn, NY, USA
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21
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Vallone F, Cintio A, Mainardi M, Caleo M, Di Garbo A. Existence of anticorrelations for local field potentials recorded from mice reared in standard condition and environmental enrichment. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:012702. [PMID: 25679638 DOI: 10.1103/physreve.91.012702] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Indexed: 06/04/2023]
Abstract
In the present paper, we analyze local field potentials (LFPs) recorded from the secondary motor cortex (M2) and primary visual cortex (V1) of freely moving mice reared in environmental enrichment (EE) and standard condition (SC). We focus on the scaling properties of the signals by using an integrated approach combining three different techniques: the Higuchi method, detrended fluctuation analysis, and power spectrum. Each technique provides direct or indirect estimations of the Hurst exponent H and this prevents spurious identification of scaling properties in time-series analysis. It is well known that the power spectrum of an LFP signal scales as 1/f(β) with β>0. Our results indicate the existence of a particular power spectrum scaling law 1/f(β) with β<0 for low frequencies (f<4 Hz) for both SC and EE rearing conditions. This type of scaling behavior is associated to the presence of anticorrelation in the corresponding LFP signals. Moreover, since EE is an experimental protocol based on the enhancement of sensorimotor stimulation, we study the possible effects of EE on the scaling properties of secondary motor cortex (M2) and primary visual cortex (V1). Notably, the difference between Hurst's exponents in EE and SC for individual cortical regions (M2) and (V1) is not statistically significant. On the other hand, using the detrended cross-correlation coefficient, we find that EE significantly reduces the functional coupling between secondary motor cortex (M2) and visual cortex (V1).
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Affiliation(s)
- F Vallone
- Institute of Biophysics, CNR-National Research Council, 56124 Pisa, Italy and The BioRobotics Institute, Scuola Superiore S. Anna, 56026 Pisa, Italy and Neuroscience Institute, CNR-National Research Council, 56124 Pisa, Italy
| | - A Cintio
- Institute of Biophysics, CNR-National Research Council, 56124 Pisa, Italy
| | - M Mainardi
- Neuroscience Institute, CNR-National Research Council, 56124 Pisa, Italy
| | - M Caleo
- Neuroscience Institute, CNR-National Research Council, 56124 Pisa, Italy
| | - A Di Garbo
- Institute of Biophysics, CNR-National Research Council, 56124 Pisa, Italy
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Bhattacharya BS, Patterson C, Galluppi F, Durrant SJ, Furber S. Engineering a thalamo-cortico-thalamic circuit on SpiNNaker: a preliminary study toward modeling sleep and wakefulness. Front Neural Circuits 2014; 8:46. [PMID: 24904294 PMCID: PMC4033042 DOI: 10.3389/fncir.2014.00046] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Accepted: 04/21/2014] [Indexed: 11/23/2022] Open
Abstract
We present a preliminary study of a thalamo-cortico-thalamic (TCT) implementation on SpiNNaker (Spiking Neural Network architecture), a brain inspired hardware platform designed to incorporate the inherent biological properties of parallelism, fault tolerance and energy efficiency. These attributes make SpiNNaker an ideal platform for simulating biologically plausible computational models. Our focus in this work is to design a TCT framework that can be simulated on SpiNNaker to mimic dynamical behavior similar to Electroencephalogram (EEG) time and power-spectra signatures in sleep-wake transition. The scale of the model is minimized for simplicity in this proof-of-concept study; thus the total number of spiking neurons is ≈1000 and represents a "mini-column" of the thalamocortical tissue. All data on model structure, synaptic layout and parameters is inspired from previous studies and abstracted at a level that is appropriate to the aims of the current study as well as computationally suitable for model simulation on a small 4-chip SpiNNaker system. The initial results from selective deletion of synaptic connectivity parameters in the model show similarity with EEG power spectra characteristics of sleep and wakefulness. These observations provide a positive perspective and a basis for future implementation of a very large scale biologically plausible model of thalamo-cortico-thalamic interactivity-the essential brain circuit that regulates the biological sleep-wake cycle and associated EEG rhythms.
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Affiliation(s)
| | - Cameron Patterson
- School of Computer Science, APT Group, University of ManchesterManchester, Lancashire, UK
| | - Francesco Galluppi
- School of Computer Science, APT Group, University of ManchesterManchester, Lancashire, UK
| | - Simon J. Durrant
- School of Psychology, Lincoln Sleep and Cognition Laboratory, University of LincolnLincoln, Lincolnshire, UK
| | - Steve Furber
- School of Computer Science, APT Group, University of ManchesterManchester, Lancashire, UK
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Wang Z, Fan H, Han F. A new regime for highly robust gamma oscillation with co-exist of accurate and weak synchronization in excitatory-inhibitory networks. Cogn Neurodyn 2014; 8:335-44. [PMID: 25009675 DOI: 10.1007/s11571-014-9290-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2013] [Revised: 03/23/2014] [Accepted: 04/15/2014] [Indexed: 10/25/2022] Open
Abstract
A great number of biological experiments show that gamma oscillation occurs in many brain areas after the presentation of stimulus. The neural systems in these brain areas are highly heterogeneous. Specifically, the neurons and synapses in these neural systems are diversified; the external inputs and parameters of these neurons and synapses are heterogeneous. How the gamma oscillation generated in such highly heterogeneous networks remains a challenging problem. Aiming at this problem, a highly heterogeneous complex network model that takes account of many aspects of real neural circuits was constructed. The network model consists of excitatory neurons and fast spiking interneurons, has three types of synapses (GABAA, AMPA, and NMDA), and has highly heterogeneous external drive currents. We found a new regime for robust gamma oscillation, i.e. the oscillation in inhibitory neurons is rather accurate but the oscillation in excitatory neurons is weak, in such highly heterogeneous neural networks. We also found that the mechanism of the oscillation is a mixture of interneuron gamma (ING) and pyramidal-interneuron gamma (PING). We explained the mixture ING and PING mechanism in a consistent-way by a compound post-synaptic current, which has a slowly rising-excitatory stage and a sharp decreasing-inhibitory stage.
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Affiliation(s)
- Zhijie Wang
- College of Information Science and Technology, Donghua University, Shanghai, 201620 China
| | - Hong Fan
- Glorious Sun School of Business and Management, Donghua University, Shanghai, 200051 China
| | - Fang Han
- College of Information Science and Technology, Donghua University, Shanghai, 201620 China
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24
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Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GMG, Lytton WW. Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 2014; 26:1239-62. [PMID: 24708371 DOI: 10.1162/neco_a_00602] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
The deceptively simple laminar structure of neocortex belies the complexity of intra- and interlaminar connectivity. We developed a computational model based primarily on a unified set of brain activity mapping studies of mouse M1. The simulation consisted of 775 spiking neurons of 10 cell types with detailed population-to-population connectivity. Static analysis of connectivity with graph-theoretic tools revealed that the corticostriatal population showed strong centrality, suggesting that would provide a network hub. Subsequent dynamical analysis confirmed this observation, in addition to revealing network dynamics that cannot be readily predicted through analysis of the wiring diagram alone. Activation thresholds depended on the stimulated layer. Low stimulation produced transient activation, while stronger activation produced sustained oscillations where the threshold for sustained responses varied by layer: 13% in layer 2/3, 54% in layer 5A, 25% in layer 5B, and 17% in layer 6. The frequency and phase of the resulting oscillation also depended on stimulation layer. By demonstrating the effectiveness of combined static and dynamic analysis, our results show how static brain maps can be related to the results of brain activity mapping.
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Affiliation(s)
- George L Chadderdon
- Department of Physiology and Pharmacology, SUNY Downstate, Brooklyn, NY 11203
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25
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Sigala R, Haufe S, Roy D, Dinse HR, Ritter P. The role of alpha-rhythm states in perceptual learning: insights from experiments and computational models. Front Comput Neurosci 2014; 8:36. [PMID: 24772077 PMCID: PMC3983484 DOI: 10.3389/fncom.2014.00036] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2013] [Accepted: 03/11/2014] [Indexed: 12/15/2022] Open
Abstract
During the past two decades growing evidence indicates that brain oscillations in the alpha band (~10 Hz) not only reflect an "idle" state of cortical activity, but also take a more active role in the generation of complex cognitive functions. A recent study shows that more than 60% of the observed inter-subject variability in perceptual learning can be ascribed to ongoing alpha activity. This evidence indicates a significant role of alpha oscillations for perceptual learning and hence motivates to explore the potential underlying mechanisms. Hence, it is the purpose of this review to highlight existent evidence that ascribes intrinsic alpha oscillations a role in shaping our ability to learn. In the review, we disentangle the alpha rhythm into different neural signatures that control information processing within individual functional building blocks of perceptual learning. We further highlight computational studies that shed light on potential mechanisms regarding how alpha oscillations may modulate information transfer and connectivity changes relevant for learning. To enable testing of those model based hypotheses, we emphasize the need for multidisciplinary approaches combining assessment of behavior and multi-scale neuronal activity, active modulation of ongoing brain states and computational modeling to reveal the mathematical principles of the complex neuronal interactions. In particular we highlight the relevance of multi-scale modeling frameworks such as the one currently being developed by "The Virtual Brain" project.
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Affiliation(s)
- Rodrigo Sigala
- Department Neurology, Charité—University MedicineBerlin, Germany
- Bernstein Focus State Dependencies of Learning, Bernstein Center for Computational NeuroscienceBerlin, Germany
| | - Sebastian Haufe
- Department Neurology, Charité—University MedicineBerlin, Germany
- Bernstein Focus State Dependencies of Learning, Bernstein Center for Computational NeuroscienceBerlin, Germany
| | - Dipanjan Roy
- Department Neurology, Charité—University MedicineBerlin, Germany
- Bernstein Focus State Dependencies of Learning, Bernstein Center for Computational NeuroscienceBerlin, Germany
| | - Hubert R. Dinse
- Neural Plasticity Lab, Institute for Neuroinformatics, Ruhr-University BochumBochum, Germany
| | - Petra Ritter
- Department Neurology, Charité—University MedicineBerlin, Germany
- Bernstein Focus State Dependencies of Learning, Bernstein Center for Computational NeuroscienceBerlin, Germany
- Minerva Research Group BrainModes, Max Planck Institute for Human Cognitive and Brain SciencesLeipzig, Germany
- Berlin School of Mind and Brain, Mind and Brain Institute, Humboldt UniversityBerlin, Germany
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26
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Rowan MS, Neymotin SA, Lytton WW. Electrostimulation to reduce synaptic scaling driven progression of Alzheimer's disease. Front Comput Neurosci 2014; 8:39. [PMID: 24765074 PMCID: PMC3982056 DOI: 10.3389/fncom.2014.00039] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2013] [Accepted: 03/18/2014] [Indexed: 01/23/2023] Open
Abstract
Cell death and synapse dysfunction are two likely causes of cognitive decline in AD. As cells die and synapses lose their drive, remaining cells suffer an initial decrease in activity. Neuronal homeostatic synaptic scaling then provides a feedback mechanism to restore activity. This homeostatic mechanism is believed to sense levels of activity-dependent cytosolic calcium within the cell and to adjust neuronal firing activity by increasing the density of AMPA synapses at remaining synapses to achieve balance. The scaling mechanism increases the firing rates of remaining cells in the network to compensate for decreases in network activity. However, this effect can itself become a pathology, as it produces increased imbalance between excitatory and inhibitory circuits, leading to greater susceptibility to further cell loss via calcium-mediated excitotoxicity. Here, we present a mechanistic explanation of how directed brain stimulation might be expected to slow AD progression based on computational simulations in a 470-neuron biomimetic model of a neocortical column. The simulations demonstrate that the addition of low-intensity electrostimulation (neuroprosthesis) to a network undergoing AD-like cell death can raise global activity and break this homeostatic-excitotoxic cascade. The increase in activity within the remaining cells in the column results in lower scaling-driven AMPAR upregulation, reduced imbalances in excitatory and inhibitory circuits, and lower susceptibility to ongoing damage.
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Affiliation(s)
- Mark S Rowan
- School of Computer Science, University of Birmingham Birmingham, UK
| | - Samuel A Neymotin
- Department Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Department Neurobiology, Yale University School of Medicine New Haven, CT, USA
| | - William W Lytton
- Department Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Department Neurology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Department Neurology, Kings County Hospital Center Brooklyn, NY, USA
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27
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Eguchi A, Neymotin SA, Stringer SM. Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity. Front Neural Circuits 2014; 8:16. [PMID: 24659956 PMCID: PMC3950416 DOI: 10.3389/fncir.2014.00016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2013] [Accepted: 02/17/2014] [Indexed: 01/13/2023] Open
Abstract
Although many computational models have been proposed to explain orientation maps in primary visual cortex (V1), it is not yet known how similar clusters of color-selective neurons in macaque V1/V2 are connected and develop. In this work, we address the problem of understanding the cortical processing of color information with a possible mechanism of the development of the patchy distribution of color selectivity via computational modeling. Each color input is decomposed into a red, green, and blue representation and transmitted to the visual cortex via a simulated optic nerve in a luminance channel and red-green and blue-yellow opponent color channels. Our model of the early visual system consists of multiple topographically-arranged layers of excitatory and inhibitory neurons, with sparse intra-layer connectivity and feed-forward connectivity between layers. Layers are arranged based on anatomy of early visual pathways, and include a retina, lateral geniculate nucleus, and layered neocortex. Each neuron in the V1 output layer makes synaptic connections to neighboring neurons and receives the three types of signals in the different channels from the corresponding photoreceptor position. Synaptic weights are randomized and learned using spike-timing-dependent plasticity (STDP). After training with natural images, the neurons display heightened sensitivity to specific colors. Information-theoretic analysis reveals mutual information between particular stimuli and responses, and that the information reaches a maximum with fewer neurons in the higher layers, indicating that estimations of the input colors can be done using the output of fewer cells in the later stages of cortical processing. In addition, cells with similar color receptive fields form clusters. Analysis of spiking activity reveals increased firing synchrony between neurons when particular color inputs are presented or removed (ON-cell/OFF-cell).
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Affiliation(s)
- Akihiro Eguchi
- Oxford Centre for Theoretical Neuroscience and Artificial Intelligence, University of OxfordOxford, UK
| | - Samuel A. Neymotin
- Department of Physiology and Pharmacology, Downstate Medical Center, State University of New YorkNew York, NY, USA
- Department of Neurobiology, Yale University School of MedicineNew Haven, CT, USA
| | - Simon M. Stringer
- Oxford Centre for Theoretical Neuroscience and Artificial Intelligence, University of OxfordOxford, UK
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28
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Lytton WW, Neymotin SA, Kerr CC. Multiscale modeling for clinical translation in neuropsychiatric disease. ACTA ACUST UNITED AC 2014; 1. [PMID: 26925364 PMCID: PMC4766859 DOI: 10.1186/2194-3990-1-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Multiscale modeling of neuropsychiatric illness bridges scales of clinical importance: from the highest scales (presentation of behavioral signs and symptoms), through intermediate scales (clinical testing and surgical intervention), down to the molecular scale of pharmacotherapy. Modeling of brain disease is difficult compared to modeling of other organs, because dysfunction manifests at scales where measurements are rudimentary due both to inadequate access (memory and cognition) and to complexity (behavior). Nonetheless, we can begin to explore these aspects through the use of information-theoretic measures as stand-ins for meaning at the top scales. We here describe efforts across five disorders: Parkinson’s, Alzheimer’s, stroke, schizophrenia, and epilepsy. We look at the use of therapeutic brain stimulation to replace lost neural signals, a loss that produces diaschisis, defined as activity changes in other brain areas due to missing inputs. These changes may in some cases be compensatory, hence beneficial, but in many cases a primary pathology, whether itself static or dynamic, sets in motion a series of dynamic consequences that produce further pathology. The simulations presented here suggest how diaschisis can be reversed by using a neuroprosthetic signal. Despite having none of the information content of the lost physiological signal, the simplified neuroprosthetic signal can restore a diaschitic area to near-normal patterns of activity. Computer simulation thus begins to explain the remarkable success of stimulation technologies - deep brain stimulation, transcranial magnetic stimulation, ultrasound stimulation, transcranial direct current stimulation - across an extremely broad range of pathologies. Multiscale modeling can help us to optimize and integrate these neuroprosthetic therapies by taking into consideration effects of different stimulation protocols, combinations of stimulation with neuropharmacological therapy, and interplay of these therapeutic modalities with particular patterns of disease focality, dynamics, and prior therapies.
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Affiliation(s)
- William W Lytton
- Department of Physiology & Pharmacology and Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA; Department of Neurology, Kings County Hospital, Brooklyn, NY 11203, USA
| | - Samuel A Neymotin
- Department of Physiology & Pharmacology and Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA
| | - Cliff C Kerr
- Department of Physiology & Pharmacology and Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA
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29
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Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW. Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett 2014; 36:204-212. [PMID: 26709323 DOI: 10.1016/j.patrec.2013.05.019] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Brain-machine interfaces can greatly improve the performance of prosthetics. Utilizing biomimetic neuronal modeling in brain machine interfaces (BMI) offers the possibility of providing naturalistic motor-control algorithms for control of a robotic limb. This will allow finer control of a robot, while also giving us new tools to better understand the brain's use of electrical signals. However, the biomimetic approach presents challenges in integrating technologies across multiple hardware and software platforms, so that the different components can communicate in real-time. We present the first steps in an ongoing effort to integrate a biomimetic spiking neuronal model of motor learning with a robotic arm. The biomimetic model (BMM) was used to drive a simple kinematic two-joint virtual arm in a motor task requiring trial-and-error convergence on a single target. We utilized the output of this model in real time to drive mirroring motion of a Barrett Technology WAM robotic arm through a user datagram protocol (UDP) interface. The robotic arm sent back information on its joint positions, which was then used by a visualization tool on the remote computer to display a realistic 3D virtual model of the moving robotic arm in real time. This work paves the way towards a full closed-loop biomimetic brain-effector system that can be incorporated in a neural decoder for prosthetic control, to be used as a platform for developing biomimetic learning algorithms for controlling real-time devices.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA
| | - George L Chadderdon
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA
| | - Samuel A Neymotin
- Department of Neurobiology, Yale University School of Medicine, New Haven, Connecticut, USA
| | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA ; Department of Neurology, State University New York Downstate, Brooklyn, New York, USA ; Department of Neurology, Kings County Hospital, Brooklyn, New York, USA
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30
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Persistent cocaine-induced reversal learning deficits are associated with altered limbic cortico-striatal local field potential synchronization. J Neurosci 2013; 33:17469-82. [PMID: 24174680 DOI: 10.1523/jneurosci.1440-13.2013] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
Repeated exposure to cocaine is known to produce persistent deficits in behavioral flexibility. Evidence suggests that these deficits are mediated in part by a circuit involving the medial prefrontal and orbitofrontal cortices (PFC and OFC), nucleus accumbens (NAC), and basolateral amygdala (BLA). To assess the effects of cocaine on this circuit, we treated rats with cocaine daily for 14 d, followed by 4 weeks of abstinence. Animals were then tested on a cross-maze-based reversal learning and set-shifting task, after which they were anesthetized to allow for recording of spontaneous local field potential (LFP) activity simultaneously from all four regions, in addition to activity evoked from acute BLA stimulation. Cocaine-treated (COC) animals showed specific deficits in reversal learning; furthermore, spontaneous LFP oscillation power was reduced and BLA-induced oscillation power was increased in all regions compared with saline-treated (SAL) rats. Theta-burst stimulation of BLA potentiated BLA-evoked responses in all regions and cocaine challenge reduced spontaneous oscillation power and evoked response amplitude, with no COC/SAL group differences. Notably, cocaine challenge produced differential changes in coherence between OFC-BLA, BLA-NAC, and OFC-NAC in COC and SAL groups. These data indicate that repeated exposure to cocaine can produce changes in oscillatory LFP synchronization along limbic cortico-striatal circuits that persist long into abstinence. Furthermore, the regional specificity of these changes strongly correlates with the observed behavioral deficits. Aberrant synchronization within and between regions and consequent dysregulation of the neurocircuitry involved in executive control may contribute to the long-lasting maladaptive decision making seen in cocaine abusers.
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31
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Nakagawa TT, Woolrich M, Luckhoo H, Joensson M, Mohseni H, Kringelbach ML, Jirsa V, Deco G. How delays matter in an oscillatory whole-brain spiking-neuron network model for MEG alpha-rhythms at rest. Neuroimage 2013; 87:383-94. [PMID: 24246492 DOI: 10.1016/j.neuroimage.2013.11.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2013] [Revised: 09/23/2013] [Accepted: 11/05/2013] [Indexed: 10/26/2022] Open
Abstract
In recent years the study of the intrinsic brain dynamics in a relaxed awake state in the absence of any specific task has gained increasing attention, as spontaneous neural activity has been found to be highly structured at a large scale. This so called resting-state activity has been found to be comprised by nonrandom spatiotemporal patterns and fluctuations, and several Resting-State Networks (RSN) have been found in BOLD-fMRI as well as in MEG signal power envelope correlations. The underlying anatomical connectivity structure between areas of the brain has been identified as being a key to the observed functional network connectivity, but the mechanisms behind this are still underdetermined. Theoretical large-scale brain models for fMRI data have corroborated the importance of the connectome in shaping network dynamics, while the importance of delays and noise differ between studies and depend on the models' specific dynamics. In the current study, we present a spiking neuron network model that is able to produce noisy, distributed alpha-oscillations, matching the power peak in the spectrum of group resting-state MEG recordings. We studied how well the model captured the inter-node correlation structure of the alpha-band power envelopes for different delays between brain areas, and found that the model performs best for propagation delays inside the physiological range (5-10 m/s). Delays also shift the transition from noisy to bursting oscillations to higher global coupling values in the model. Thus, in contrast to the asynchronous fMRI state, delays are important to consider in the presence of oscillation.
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Affiliation(s)
- Tristan T Nakagawa
- Center for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona 08018, Spain.
| | - Mark Woolrich
- Oxford Ctr. For Human Brain Activity, Univ. of Oxford, Oxford, United Kingdom
| | - Henry Luckhoo
- Oxford Ctr. For Human Brain Activity, Univ. of Oxford, Oxford, United Kingdom
| | - Morten Joensson
- Department of Psychiatry, University of Oxford, Oxford, UK; Center of Functionally Integrative Neuroscience (CFIN), Aarhus University, Denmark
| | - Hamid Mohseni
- Oxford Ctr. For Human Brain Activity, Univ. of Oxford, Oxford, United Kingdom
| | - Morten L Kringelbach
- Department of Psychiatry, University of Oxford, Oxford, UK; Center of Functionally Integrative Neuroscience (CFIN), Aarhus University, Denmark
| | - Viktor Jirsa
- Institut de Neurosciences des Systèmes UMR INSERM 1106, Aix-Marseille Universitè, 13005 Marseille, France
| | - Gustavo Deco
- Center for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona 08018, Spain; Institució Catalana de la Recerca i Estudis Avançats, Universitat Pompeu Fabra, Barcelona 08010, Spain
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32
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Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW. Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural Comput 2013; 25:3263-93. [PMID: 24047323 DOI: 10.1162/neco_a_00521] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Neocortical mechanisms of learning sensorimotor control involve a complex series of interactions at multiple levels, from synaptic mechanisms to cellular dynamics to network connectomics. We developed a model of sensory and motor neocortex consisting of 704 spiking model neurons. Sensory and motor populations included excitatory cells and two types of interneurons. Neurons were interconnected with AMPA/NMDA and GABAA synapses. We trained our model using spike-timing-dependent reinforcement learning to control a two-joint virtual arm to reach to a fixed target. For each of 125 trained networks, we used 200 training sessions, each involving 15 s reaches to the target from 16 starting positions. Learning altered network dynamics, with enhancements to neuronal synchrony and behaviorally relevant information flow between neurons. After learning, networks demonstrated retention of behaviorally relevant memories by using proprioceptive information to perform reach-to-target from multiple starting positions. Networks dynamically controlled which joint rotations to use to reach a target, depending on current arm position. Learning-dependent network reorganization was evident in both sensory and motor populations: learned synaptic weights showed target-specific patterning optimized for particular reach movements. Our model embodies an integrative hypothesis of sensorimotor cortical learning that could be used to interpret future electrophysiological data recorded in vivo from sensorimotor learning experiments. We used our model to make the following predictions: learning enhances synchrony in neuronal populations and behaviorally relevant information flow across neuronal populations, enhanced sensory processing aids task-relevant motor performance and the relative ease of a particular movement in vivo depends on the amount of sensory information required to complete the movement.
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Affiliation(s)
- Samuel A Neymotin
- Department of Neurobiology, Yale University School of Medicine, New Haven, CT 06510, U.S.A., and Department of Physiology and Pharmacology, SUNY Downstate, Brooklyn, NY 11203, U.S.A.
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33
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Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW. Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci 2013; 7:39. [PMID: 23630492 PMCID: PMC3635017 DOI: 10.3389/fncom.2013.00039] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2013] [Accepted: 04/02/2013] [Indexed: 11/30/2022] Open
Abstract
The basal ganglia play a crucial role in the execution of movements, as demonstrated by the severe motor deficits that accompany Parkinson's disease (PD). Since motor commands originate in the cortex, an important question is how the basal ganglia influence cortical information flow, and how this influence becomes pathological in PD. To explore this, we developed a composite neuronal network/neural field model. The network model consisted of 4950 spiking neurons, divided into 15 excitatory and inhibitory cell populations in the thalamus and cortex. The field model consisted of the cortex, thalamus, striatum, subthalamic nucleus, and globus pallidus. Both models have been separately validated in previous work. Three field models were used: one with basal ganglia parameters based on data from healthy individuals, one based on data from individuals with PD, and one purely thalamocortical model. Spikes generated by these field models were then used to drive the network model. Compared to the network driven by the healthy model, the PD-driven network had lower firing rates, a shift in spectral power toward lower frequencies, and higher probability of bursting; each of these findings is consistent with empirical data on PD. In the healthy model, we found strong Granger causality between cortical layers in the beta and low gamma frequency bands, but this causality was largely absent in the PD model. In particular, the reduction in Granger causality from the main “input” layer of the cortex (layer 4) to the main “output” layer (layer 5) was pronounced. This may account for symptoms of PD that seem to reflect deficits in information flow, such as bradykinesia. In general, these results demonstrate that the brain's large-scale oscillatory environment, represented here by the field model, strongly influences the information processing that occurs within its subnetworks. Hence, it may be preferable to drive spiking network models with physiologically realistic inputs rather than pure white noise.
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Affiliation(s)
- Cliff C Kerr
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; School of Physics, University of Sydney NSW, Australia ; Brain Dynamics Centre, Westmead Millennium Institute Westmead, NSW, Australia
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34
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Song W, Kerr CC, Lytton WW, Francis JT. Cortical plasticity induced by spike-triggered microstimulation in primate somatosensory cortex. PLoS One 2013; 8:e57453. [PMID: 23472086 PMCID: PMC3589388 DOI: 10.1371/journal.pone.0057453] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2012] [Accepted: 01/24/2013] [Indexed: 11/19/2022] Open
Abstract
Electrical stimulation of the nervous system for therapeutic purposes, such as deep brain stimulation in the treatment of Parkinson’s disease, has been used for decades. Recently, increased attention has focused on using microstimulation to restore functions as diverse as somatosensation and memory. However, how microstimulation changes the neural substrate is still not fully understood. Microstimulation may cause cortical changes that could either compete with or complement natural neural processes, and could result in neuroplastic changes rendering the region dysfunctional or even epileptic. As part of our efforts to produce neuroprosthetic devices and to further study the effects of microstimulation on the cortex, we stimulated and recorded from microelectrode arrays in the hand area of the primary somatosensory cortex (area 1) in two awake macaque monkeys. We applied a simple neuroprosthetic microstimulation protocol to a pair of electrodes in the area 1 array, using either random pulses or pulses time-locked to the recorded spiking activity of a reference neuron. This setup was replicated using a computer model of the thalamocortical system, which consisted of 1980 spiking neurons distributed among six cortical layers and two thalamic nuclei. Experimentally, we found that spike-triggered microstimulation induced cortical plasticity, as shown by increased unit-pair mutual information, while random microstimulation did not. In addition, there was an increased response to touch following spike-triggered microstimulation, along with decreased neural variability. The computer model successfully reproduced both qualitative and quantitative aspects of the experimental findings. The physiological findings of this study suggest that even simple microstimulation protocols can be used to increase somatosensory information flow.
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Affiliation(s)
- Weiguo Song
- Departments of Physiology and Pharmacology, SUNY Downstate Medical Center, Brooklyn, New York, United States of America
| | - Cliff C. Kerr
- Departments of Physiology and Pharmacology, SUNY Downstate Medical Center, Brooklyn, New York, United States of America
- School of Physics, University of Sydney, Sydney, New South Wales, Australia
- * E-mail:
| | - William W. Lytton
- Departments of Physiology and Pharmacology, SUNY Downstate Medical Center, Brooklyn, New York, United States of America
- Department of Neurology, Kings County Hospital, Brooklyn, New York, United States of America
- The Robert Furchgott Center for Neural and Behavioral Science, SUNY Downstate Medical Center, Brooklyn, New York, United States of America
- Joint Graduate Program in Biomedical Engineering SUNY Downstate and NYU-POLY, Brooklyn, New York, United States of America
| | - Joseph T. Francis
- Departments of Physiology and Pharmacology, SUNY Downstate Medical Center, Brooklyn, New York, United States of America
- The Robert Furchgott Center for Neural and Behavioral Science, SUNY Downstate Medical Center, Brooklyn, New York, United States of America
- Joint Graduate Program in Biomedical Engineering SUNY Downstate and NYU-POLY, Brooklyn, New York, United States of America
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Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW. Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex. PLoS One 2012; 7:e47251. [PMID: 23094042 PMCID: PMC3477154 DOI: 10.1371/journal.pone.0047251] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2012] [Accepted: 09/12/2012] [Indexed: 11/19/2022] Open
Abstract
Sensorimotor control has traditionally been considered from a control theory perspective, without relation to neurobiology. In contrast, here we utilized a spiking-neuron model of motor cortex and trained it to perform a simple movement task, which consisted of rotating a single-joint “forearm” to a target. Learning was based on a reinforcement mechanism analogous to that of the dopamine system. This provided a global reward or punishment signal in response to decreasing or increasing distance from hand to target, respectively. Output was partially driven by Poisson motor babbling, creating stochastic movements that could then be shaped by learning. The virtual forearm consisted of a single segment rotated around an elbow joint, controlled by flexor and extensor muscles. The model consisted of 144 excitatory and 64 inhibitory event-based neurons, each with AMPA, NMDA, and GABA synapses. Proprioceptive cell input to this model encoded the 2 muscle lengths. Plasticity was only enabled in feedforward connections between input and output excitatory units, using spike-timing-dependent eligibility traces for synaptic credit or blame assignment. Learning resulted from a global 3-valued signal: reward (+1), no learning (0), or punishment (−1), corresponding to phasic increases, lack of change, or phasic decreases of dopaminergic cell firing, respectively. Successful learning only occurred when both reward and punishment were enabled. In this case, 5 target angles were learned successfully within 180 s of simulation time, with a median error of 8 degrees. Motor babbling allowed exploratory learning, but decreased the stability of the learned behavior, since the hand continued moving after reaching the target. Our model demonstrated that a global reinforcement signal, coupled with eligibility traces for synaptic plasticity, can train a spiking sensorimotor network to perform goal-directed motor behavior.
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Affiliation(s)
- George L Chadderdon
- Department of Physiology and Pharmacology, State University New York Downstate, Brooklyn, New York, United States of America.
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Skinner FK. Cellular-based modeling of oscillatory dynamics in brain networks. Curr Opin Neurobiol 2012; 22:660-9. [DOI: 10.1016/j.conb.2012.02.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2011] [Revised: 01/23/2012] [Accepted: 02/05/2012] [Indexed: 11/27/2022]
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Kerr CC, Neymotin SA, Chadderdon GL, Fietkiewicz CT, Francis JT, Lytton WW. Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE Trans Neural Syst Rehabil Eng 2011; 20:153-60. [PMID: 22180517 DOI: 10.1109/tnsre.2011.2178614] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Damage to a cortical area reduces not only information transmitted to other cortical areas, but also activation of these areas. This phenomenon, whereby the dynamics of a follower area are dramatically altered, is typically manifested as a marked reduction in activity. Ideally, neuroprosthetic stimulation would replace both information and activation. However, replacement of activation alone may be valuable as a means of restoring dynamics and information processing of other signals in this multiplexing system. We used neuroprosthetic stimulation in a computer model of the cortex to repair activation dynamics, using a simple repetitive stimulation to replace the more complex, naturalistic stimulation that had been removed. We found that we were able to restore activity in terms of neuronal firing rates. Additionally, we were able to restore information processing, measured as a restoration of causality between an experimentally recorded signal fed into the in silico brain and a cortical output. These results indicate that even simple neuroprosthetics that do not restore lost information may nonetheless be effective in improving the functionality of surrounding areas of cortex.
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Affiliation(s)
- Cliff C Kerr
- Department of Physiology and Pharmacology, SUNY Downstate, Brooklyn, NY11203, USA.
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McDonnell MD, Mohan A, Stricker C, Ward LM. Input-rate modulation of γ oscillations is sensitive to network topology, delays and short-term plasticity. Brain Res 2011; 1434:162-77. [PMID: 22000590 DOI: 10.1016/j.brainres.2011.08.070] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2011] [Revised: 08/29/2011] [Accepted: 08/30/2011] [Indexed: 11/24/2022]
Abstract
Simulated networks of excitatory and inhibitory neurons have previously been shown to reproduce critical features of experimental data regarding neural coding in V1, such as a positive relationship between thalamic input spike rate and the power of gamma frequency oscillations. This effect, referred to as modulated gamma power, could represent a neural code in V1 for stimulus characteristics that affect thalamic spike rate such as contrast or intensity. The simulated network's assumptions included homogeneous random connectivity, equal synaptic delays after spike arrival, and constant synaptic efficacies. Plausible alternative assumptions include small world connectivity, a wide distribution of axonal propagation delays, and short term synaptic plasticity, and here we assess the individual impact of each of these on the model's success in reproducing modulated gamma power. First, we developed several alternative algorithms for simulating directed networks with clustered connectivity and balanced excitation and inhibition. We found that modulated gamma power was absent in all small-world networks that had a relatively low abundance of reciprocal connectivity, which suggests that such motifs are present in V1 cortical networks at levels at least equal to those found in random networks. We also found in a different network type that the balance of excitation and inhibition could be destroyed when the network was in the small-world regime. Given all neurons had identical in-degrees, this result suggests that balance relies on motif distributions as well as mean connectivity. Second, altering the distribution of axonal delays had little effect, but increasing the mean delay led to a secondary gamma modulation at harmonics of the main peak, and since this is not observed experimentally, it suggests a mean delay in V1 networks less than 2 ms. Finally, we compared two types of excitatory synaptic plasticity, and found that modulated beta power emerged in addition to gamma power for one type, in the presence of short term depression in interneurons. This article is part of a Special Issue entitled "Neural Coding".
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Affiliation(s)
- Mark D McDonnell
- Computational & Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia, Mawson Lakes, SA 5095, Australia.
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Neymotin SA, Lazarewicz MT, Sherif M, Contreras D, Finkel LH, Lytton WW. Ketamine disrupts θ modulation of γ in a computer model of hippocampus. J Neurosci 2011; 31:11733-43. [PMID: 21832203 PMCID: PMC3177405 DOI: 10.1523/jneurosci.0501-11.2011] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2011] [Revised: 06/06/2011] [Accepted: 06/10/2011] [Indexed: 11/21/2022] Open
Abstract
Abnormalities in oscillations have been suggested to play a role in schizophrenia. We studied theta-modulated gamma oscillations in a computer model of hippocampal CA3 in vivo with and without simulated application of ketamine, an NMDA receptor antagonist and psychotomimetic. Networks of 1200 multicompartment neurons [pyramidal, basket, and oriens-lacunosum moleculare (OLM) cells] generated theta and gamma oscillations from intrinsic network dynamics: basket cells primarily generated gamma and amplified theta, while OLM cells strongly contributed to theta. Extrinsic medial septal inputs paced theta and amplified both theta and gamma oscillations. Exploration of NMDA receptor reduction across all location combinations demonstrated that the experimentally observed ketamine effect occurred only with isolated reduction of NMDA receptors on OLMs. In the ketamine simulations, lower OLM activity reduced theta power and disinhibited pyramidal cells, resulting in increased basket cell activation and gamma power. Our simulations predict the following: (1) ketamine increases firing rates; (2) oscillations can be generated by intrinsic hippocampal circuits; (3) medial-septum inputs pace and augment oscillations; (4) pyramidal cells lead basket cells at the gamma peak but lag at trough; (5) basket cells amplify theta rhythms; (6) ketamine alters oscillations due to primary blockade at OLM NMDA receptors; (7) ketamine alters phase relationships of cell firing; (8) ketamine reduces network responsivity to the environment; (9) ketamine effect could be reversed by providing a continuous inward current to OLM cells. We suggest that this last prediction has implications for a possible novel treatment for cognitive deficits of schizophrenia by targeting OLM cells.
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Affiliation(s)
- Samuel A Neymotin
- State University of New York Downstate/New York University-Poly Joint Biomedical Engineering Program, Brooklyn, New York 11201, USA.
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