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Courson J, Quoy M, Timofeeva Y, Manos T. An exploratory computational analysis in mice brain networks of widespread epileptic seizure onset locations along with potential strategies for effective intervention and propagation control. Front Comput Neurosci 2024; 18:1360009. [PMID: 38468870 PMCID: PMC10925689 DOI: 10.3389/fncom.2024.1360009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 02/08/2024] [Indexed: 03/13/2024] Open
Abstract
Mean-field models have been developed to replicate key features of epileptic seizure dynamics. However, the precise mechanisms and the role of the brain area responsible for seizure onset and propagation remain incompletely understood. In this study, we employ computational methods within The Virtual Brain framework and the Epileptor model to explore how the location and connectivity of an Epileptogenic Zone (EZ) in a mouse brain are related to focal seizures (seizures that start in one brain area and may or may not remain localized), with a specific focus on the hippocampal region known for its association with epileptic seizures. We then devise computational strategies to confine seizures (prevent widespread propagation), simulating medical-like treatments such as tissue resection and the application of an anti-seizure drugs or neurostimulation to suppress hyperexcitability. Through selectively removing (blocking) specific connections informed by the structural connectome and graph network measurements or by locally reducing outgoing connection weights of EZ areas, we demonstrate that seizures can be kept constrained around the EZ region. We successfully identified the minimal connections necessary to prevent widespread seizures, with a particular focus on minimizing surgical or medical intervention while simultaneously preserving the original structural connectivity and maximizing brain functionality.
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Affiliation(s)
- Juliette Courson
- ETIS Lab, ENSEA, CNRS, UMR8051, CY Cergy-Paris University, Cergy, France
- Laboratoire de Physique Théorique et Modélisation, UMR 8089, CY Cergy Paris Université, CNRS, Cergy-Pontoise, France
- Department of Computer Science, University of Warwick, Coventry, United Kingdom
| | - Mathias Quoy
- ETIS Lab, ENSEA, CNRS, UMR8051, CY Cergy-Paris University, Cergy, France
- IPAL CNRS Singapore, Singapore, Singapore
| | - Yulia Timofeeva
- Department of Computer Science, University of Warwick, Coventry, United Kingdom
- Department of Clinical and Experimental Epilepsy, UCL Queen Square Institute of Neurology, University College London, London, United Kingdom
| | - Thanos Manos
- ETIS Lab, ENSEA, CNRS, UMR8051, CY Cergy-Paris University, Cergy, France
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Zheng Z, Xu C, Fan J, Liu M, Chen X. Order parameter dynamics in complex systems: From models to data. CHAOS (WOODBURY, N.Y.) 2024; 34:022101. [PMID: 38341762 DOI: 10.1063/5.0180340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/14/2023] [Indexed: 02/13/2024]
Abstract
Collective ordering behaviors are typical macroscopic manifestations embedded in complex systems and can be ubiquitously observed across various physical backgrounds. Elements in complex systems may self-organize via mutual or external couplings to achieve diverse spatiotemporal coordinations. The order parameter, as a powerful quantity in describing the transition to collective states, may emerge spontaneously from large numbers of degrees of freedom through competitions. In this minireview, we extensively discussed the collective dynamics of complex systems from the viewpoint of order-parameter dynamics. A synergetic theory is adopted as the foundation of order-parameter dynamics, and it focuses on the self-organization and collective behaviors of complex systems. At the onset of macroscopic transitions, slow modes are distinguished from fast modes and act as order parameters, whose evolution can be established in terms of the slaving principle. We explore order-parameter dynamics in both model-based and data-based scenarios. For situations where microscopic dynamics modeling is available, as prototype examples, synchronization of coupled phase oscillators, chimera states, and neuron network dynamics are analytically studied, and the order-parameter dynamics is constructed in terms of reduction procedures such as the Ott-Antonsen ansatz, the Lorentz ansatz, and so on. For complicated systems highly challenging to be well modeled, we proposed the eigen-microstate approach (EMP) to reconstruct the macroscopic order-parameter dynamics, where the spatiotemporal evolution brought by big data can be well decomposed into eigenmodes, and the macroscopic collective behavior can be traced by Bose-Einstein condensation-like transitions and the emergence of dominant eigenmodes. The EMP is successfully applied to some typical examples, such as phase transitions in the Ising model, climate dynamics in earth systems, fluctuation patterns in stock markets, and collective motion in living systems.
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Affiliation(s)
- Zhigang Zheng
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China and College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Can Xu
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China and College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Jingfang Fan
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
| | - Maoxin Liu
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
| | - Xiaosong Chen
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
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Menesse G, Kinouchi O. Less is different: Why sparse networks with inhibition differ from complete graphs. Phys Rev E 2023; 108:024315. [PMID: 37723743 DOI: 10.1103/physreve.108.024315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 08/03/2023] [Indexed: 09/20/2023]
Abstract
In neuronal systems, inhibition contributes to stabilizing dynamics and regulating pattern formation. Through developing mean-field theories of neuronal models, using complete graph networks, inhibition is commonly viewed as one "control parameter" of the system, promoting an absorbing phase transition. Here, we show that, for low connectivity sparse networks, inhibition weight is not a control parameter of the absorbing transition. We present analytical and simulation results using generic stochastic integrate-and-fire neurons that, under specific restrictions, become other simpler stochastic neuron models common in literature, which allows us to show that our results are valid for those models as well. We also give a simple explanation about why the inhibition role depends on topology, even when the topology has a dimensionality greater than the critical one. The absorbing transition independence of the inhibitory weight may be an important feature of a sparse network, as it will allow the network to maintain a near-critical regime, self-tuning average excitation, but at the same time have the freedom to adjust inhibitory weights for computation, learning, and memory, exploiting the benefits of criticality.
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Affiliation(s)
- Gustavo Menesse
- Departamento de Electromagnetismo y Física de la Materia, Facultad de Ciencias, University of Granada, 18071 Granada, Spain
| | - Osame Kinouchi
- Departamento de Física, FFCLRP, Universidade de São Paulo, Ribeirão Preto, SP 14040-901, Brazil
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Levenstein D, Okun M. Logarithmically scaled, gamma distributed neuronal spiking. J Physiol 2023; 601:3055-3069. [PMID: 36086892 PMCID: PMC10952267 DOI: 10.1113/jp282758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 07/28/2022] [Indexed: 11/08/2022] Open
Abstract
Naturally log-scaled quantities abound in the nervous system. Distributions of these quantities have non-intuitive properties, which have implications for data analysis and the understanding of neural circuits. Here, we review the log-scaled statistics of neuronal spiking and the relevant analytical probability distributions. Recent work using log-scaling revealed that interspike intervals of forebrain neurons segregate into discrete modes reflecting spiking at different timescales and are each well-approximated by a gamma distribution. Each neuron spends most of the time in an irregular spiking 'ground state' with the longest intervals, which determines the mean firing rate of the neuron. Across the entire neuronal population, firing rates are log-scaled and well approximated by the gamma distribution, with a small number of highly active neurons and an overabundance of low rate neurons (the 'dark matter'). These results are intricately linked to a heterogeneous balanced operating regime, which confers upon neuronal circuits multiple computational advantages and has evolutionarily ancient origins.
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Affiliation(s)
- Daniel Levenstein
- Department of Neurology and NeurosurgeryMcGill UniversityMontrealQCCanada
- MilaMontréalQCCanada
| | - Michael Okun
- Department of Psychology and Neuroscience InstituteUniversity of SheffieldSheffieldUK
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Bergoin R, Torcini A, Deco G, Quoy M, Zamora-López G. Inhibitory neurons control the consolidation of neural assemblies via adaptation to selective stimuli. Sci Rep 2023; 13:6949. [PMID: 37117236 PMCID: PMC10147639 DOI: 10.1038/s41598-023-34165-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 04/25/2023] [Indexed: 04/30/2023] Open
Abstract
Brain circuits display modular architecture at different scales of organization. Such neural assemblies are typically associated to functional specialization but the mechanisms leading to their emergence and consolidation still remain elusive. In this paper we investigate the role of inhibition in structuring new neural assemblies driven by the entrainment to various inputs. In particular, we focus on the role of partially synchronized dynamics for the creation and maintenance of structural modules in neural circuits by considering a network of excitatory and inhibitory [Formula: see text]-neurons with plastic Hebbian synapses. The learning process consists of an entrainment to temporally alternating stimuli that are applied to separate regions of the network. This entrainment leads to the emergence of modular structures. Contrary to common practice in artificial neural networks-where the acquired weights are typically frozen after the learning session-we allow for synaptic adaptation even after the learning phase. We find that the presence of inhibitory neurons in the network is crucial for the emergence and the post-learning consolidation of the modular structures. Indeed networks made of purely excitatory neurons or of neurons not respecting Dale's principle are unable to form or to maintain the modular architecture induced by the stimuli. We also demonstrate that the number of inhibitory neurons in the network is directly related to the maximal number of neural assemblies that can be consolidated, supporting the idea that inhibition has a direct impact on the memory capacity of the neural network.
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Affiliation(s)
- Raphaël Bergoin
- ETIS, UMR 8051, ENSEA, CY Cergy Paris Université, CNRS, 6 Av. du Ponceau, 95000, Cergy-Pontoise, France.
- Center for Brain and Cognition, Department of Information and Communications Technologies, Pompeu Fabra University, Carrer Ramón Trias i Fargas 25-27, 08005, Barcelona, Spain.
| | - Alessandro Torcini
- Laboratoire de Physique Théorique et Modélisation, UMR 8089, CY Cergy Paris Université, CNRS, 2 Av. Adolphe Chauvin, 95032, Cergy-Pontoise, France
| | - Gustavo Deco
- Center for Brain and Cognition, Department of Information and Communications Technologies, Pompeu Fabra University, Carrer Ramón Trias i Fargas 25-27, 08005, Barcelona, Spain
- Instituciò Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluis Companys 23, 08010, Barcelona, Spain
| | - Mathias Quoy
- ETIS, UMR 8051, ENSEA, CY Cergy Paris Université, CNRS, 6 Av. du Ponceau, 95000, Cergy-Pontoise, France
- IPAL, CNRS, 1 Fusionopolis Way #21-01 Connexis (South Tower), Singapore, 138632, Singapore
| | - Gorka Zamora-López
- Center for Brain and Cognition, Department of Information and Communications Technologies, Pompeu Fabra University, Carrer Ramón Trias i Fargas 25-27, 08005, Barcelona, Spain
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Clusella P, Köksal-Ersöz E, Garcia-Ojalvo J, Ruffini G. Comparison between an exact and a heuristic neural mass model with second-order synapses. BIOLOGICAL CYBERNETICS 2023; 117:5-19. [PMID: 36454267 PMCID: PMC10160168 DOI: 10.1007/s00422-022-00952-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 10/23/2022] [Indexed: 05/05/2023]
Abstract
Neural mass models (NMMs) are designed to reproduce the collective dynamics of neuronal populations. A common framework for NMMs assumes heuristically that the output firing rate of a neural population can be described by a static nonlinear transfer function (NMM1). However, a recent exact mean-field theory for quadratic integrate-and-fire (QIF) neurons challenges this view by showing that the mean firing rate is not a static function of the neuronal state but follows two coupled nonlinear differential equations (NMM2). Here we analyze and compare these two descriptions in the presence of second-order synaptic dynamics. First, we derive the mathematical equivalence between the two models in the infinitely slow synapse limit, i.e., we show that NMM1 is an approximation of NMM2 in this regime. Next, we evaluate the applicability of this limit in the context of realistic physiological parameter values by analyzing the dynamics of models with inhibitory or excitatory synapses. We show that NMM1 fails to reproduce important dynamical features of the exact model, such as the self-sustained oscillations of an inhibitory interneuron QIF network. Furthermore, in the exact model but not in the limit one, stimulation of a pyramidal cell population induces resonant oscillatory activity whose peak frequency and amplitude increase with the self-coupling gain and the external excitatory input. This may play a role in the enhanced response of densely connected networks to weak uniform inputs, such as the electric fields produced by noninvasive brain stimulation.
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Affiliation(s)
- Pau Clusella
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, 08003, Barcelona, Spain.
| | - Elif Köksal-Ersöz
- LTSI - UMR 1099, INSERM, Univ Rennes, Campus Beaulieu, 35000, Rennes, France
| | - Jordi Garcia-Ojalvo
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, 08003, Barcelona, Spain
| | - Giulio Ruffini
- Brain Modeling Department, Neuroelectrics, Av. Tibidabo, 47b, 08035, Barcelona, Spain.
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Exact mean-field models for spiking neural networks with adaptation. J Comput Neurosci 2022; 50:445-469. [PMID: 35834100 DOI: 10.1007/s10827-022-00825-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 06/15/2022] [Indexed: 10/17/2022]
Abstract
Networks of spiking neurons with adaption have been shown to be able to reproduce a wide range of neural activities, including the emergent population bursting and spike synchrony that underpin brain disorders and normal function. Exact mean-field models derived from spiking neural networks are extremely valuable, as such models can be used to determine how individual neurons and the network they reside within interact to produce macroscopic network behaviours. In the paper, we derive and analyze a set of exact mean-field equations for the neural network with spike frequency adaptation. Specifically, our model is a network of Izhikevich neurons, where each neuron is modeled by a two dimensional system consisting of a quadratic integrate and fire equation plus an equation which implements spike frequency adaptation. Previous work deriving a mean-field model for this type of network, relied on the assumption of sufficiently slow dynamics of the adaptation variable. However, this approximation did not succeed in establishing an exact correspondence between the macroscopic description and the realistic neural network, especially when the adaptation time constant was not large. The challenge lies in how to achieve a closed set of mean-field equations with the inclusion of the mean-field dynamics of the adaptation variable. We address this problem by using a Lorentzian ansatz combined with the moment closure approach to arrive at a mean-field system in the thermodynamic limit. The resulting macroscopic description is capable of qualitatively and quantitatively describing the collective dynamics of the neural network, including transition between states where the individual neurons exhibit asynchronous tonic firing and synchronous bursting. We extend the approach to a network of two populations of neurons and discuss the accuracy and efficacy of our mean-field approximations by examining all assumptions that are imposed during the derivation. Numerical bifurcation analysis of our mean-field models reveals bifurcations not previously observed in the models, including a novel mechanism for emergence of bursting in the network. We anticipate our results will provide a tractable and reliable tool to investigate the underlying mechanism of brain function and dysfunction from the perspective of computational neuroscience.
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Pyragas V, Pyragas K. Mean-field equations for neural populations with q-Gaussian heterogeneities. Phys Rev E 2022; 105:044402. [PMID: 35590671 DOI: 10.1103/physreve.105.044402] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 03/29/2022] [Indexed: 06/15/2023]
Abstract
Describing the collective dynamics of large neural populations using low-dimensional models for averaged variables has long been an attractive task in theoretical neuroscience. Recently developed reduction methods make it possible to derive such models directly from the microscopic dynamics of individual neurons. To simplify the reduction, the Cauchy distribution is usually assumed for heterogeneous network parameters. Here we extend the reduction method for a wider class of heterogeneities defined by the q-Gaussian distribution. The shape of this distribution depends on the Tsallis index q and gradually changes from the Cauchy distribution to the normal Gaussian distribution as this index changes. We derive the mean-field equations for an inhibitory network of quadratic integrate-and-fire neurons with a q-Gaussian-distributed excitability parameter. It is shown that the dynamic modes of the network significantly depend on the form of the distribution determined by the Tsallis index. The results obtained from the mean-field equations are confirmed by numerical simulation of the microscopic model.
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Affiliation(s)
- Viktoras Pyragas
- Center for Physical Sciences and Technology, 10257 Vilnius, Lithuania
| | - Kestutis Pyragas
- Center for Physical Sciences and Technology, 10257 Vilnius, Lithuania
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di Volo M, Segneri M, Goldobin DS, Politi A, Torcini A. Coherent oscillations in balanced neural networks driven by endogenous fluctuations. CHAOS (WOODBURY, N.Y.) 2022; 32:023120. [PMID: 35232059 DOI: 10.1063/5.0075751] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 01/26/2022] [Indexed: 06/14/2023]
Abstract
We present a detailed analysis of the dynamical regimes observed in a balanced network of identical quadratic integrate-and-fire neurons with sparse connectivity for homogeneous and heterogeneous in-degree distributions. Depending on the parameter values, either an asynchronous regime or periodic oscillations spontaneously emerge. Numerical simulations are compared with a mean-field model based on a self-consistent Fokker-Planck equation (FPE). The FPE reproduces quite well the asynchronous dynamics in the homogeneous case by either assuming a Poissonian or renewal distribution for the incoming spike trains. An exact self-consistent solution for the mean firing rate obtained in the limit of infinite in-degree allows identifying balanced regimes that can be either mean- or fluctuation-driven. A low-dimensional reduction of the FPE in terms of circular cumulants is also considered. Two cumulants suffice to reproduce the transition scenario observed in the network. The emergence of periodic collective oscillations is well captured both in the homogeneous and heterogeneous setups by the mean-field models upon tuning either the connectivity or the input DC current. In the heterogeneous situation, we analyze also the role of structural heterogeneity.
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Affiliation(s)
- Matteo di Volo
- Laboratoire de Physique Théorique et Modélisation, UMR 8089, CY Cergy Paris Université, CNRS, 95302 Cergy-Pontoise, France
| | - Marco Segneri
- Laboratoire de Physique Théorique et Modélisation, UMR 8089, CY Cergy Paris Université, CNRS, 95302 Cergy-Pontoise, France
| | - Denis S Goldobin
- Institute of Continuous Media Mechanics, Ural Branch of RAS, Acad. Korolev street 1, 614013 Perm, Russia
| | - Antonio Politi
- Institute for Pure and Applied Mathematics and Department of Physics (SUPA), Old Aberdeen, Aberdeen AB24 3UE, United Kingdom
| | - Alessandro Torcini
- Laboratoire de Physique Théorique et Modélisation, UMR 8089, CY Cergy Paris Université, CNRS, 95302 Cergy-Pontoise, France
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