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Bergquist JA, Zenger B, Rupp LC, Busatto A, Tate J, Brooks DH, Narayan A, MacLeod RS. Uncertainty quantification of the effect of cardiac position variability in the inverse problem of electrocardiographic imaging. Physiol Meas 2023; 44:105003. [PMID: 37734339 DOI: 10.1088/1361-6579/acfc32] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 09/21/2023] [Indexed: 09/23/2023]
Abstract
Objective.Electrocardiographic imaging (ECGI) is a functional imaging modality that consists of two related problems, the forward problem of reconstructing body surface electrical signals given cardiac bioelectric activity, and the inverse problem of reconstructing cardiac bioelectric activity given measured body surface signals. ECGI relies on a model for how the heart generates bioelectric signals which is subject to variability in inputs. The study of how uncertainty in model inputs affects the model output is known as uncertainty quantification (UQ). This study establishes develops, and characterizes the application of UQ to ECGI.Approach.We establish two formulations for applying UQ to ECGI: a polynomial chaos expansion (PCE) based parametric UQ formulation (PCE-UQ formulation), and a novel UQ-aware inverse formulation which leverages our previously established 'joint-inverse' formulation (UQ joint-inverse formulation). We apply these to evaluate the effect of uncertainty in the heart position on the ECGI solutions across a range of ECGI datasets.Main results.We demonstrated the ability of our UQ-ECGI formulations to characterize the effect of parameter uncertainty on the ECGI inverse problem. We found that while the PCE-UQ inverse solution provided more complex outputs such as sensitivities and standard deviation, the UQ joint-inverse solution provided a more interpretable output in the form of a single ECGI solution. We find that between these two methods we are able to assess a wide range of effects that heart position variability has on the ECGI solution.Significance.This study, for the first time, characterizes in detail the application of UQ to the ECGI inverse problem. We demonstrated how UQ can provide insight into the behavior of ECGI using variability in cardiac position as a test case. This study lays the groundwork for future development of UQ-ECGI studies, as well as future development of ECGI formulations which are robust to input parameter variability.
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Affiliation(s)
- Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
- Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, SLC, UT, United States of America
- Department of Biomedical Engineering, University of Utah, SLC, UT, United States of America
| | - Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
- Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, SLC, UT, United States of America
- Department of Biomedical Engineering, University of Utah, SLC, UT, United States of America
- School of Medicine, University of Utah, SLC, UT, United States of America
| | - Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
- Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, SLC, UT, United States of America
- Department of Biomedical Engineering, University of Utah, SLC, UT, United States of America
| | - Anna Busatto
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
- Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, SLC, UT, United States of America
- Department of Biomedical Engineering, University of Utah, SLC, UT, United States of America
| | - Jess Tate
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
| | - Dana H Brooks
- Department of Electrical and Computer Engineering, Northeastern University, United States of America
| | - Akil Narayan
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
- Department of Mathematics, University of Utah, SLC, UT, United States of America
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, United States of America
- Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, SLC, UT, United States of America
- Department of Biomedical Engineering, University of Utah, SLC, UT, United States of America
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Yadan Z, Jian L, Jian W, Yifu L, Haiying L, Hairui L. An expert review of the inverse problem in electrocardiographic imaging for the non-invasive identification of atrial fibrillation drivers. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 240:107676. [PMID: 37343376 DOI: 10.1016/j.cmpb.2023.107676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 06/06/2023] [Accepted: 06/09/2023] [Indexed: 06/23/2023]
Abstract
BACKGROUND AND OBJECTIVE Electrocardiographic imaging (ECGI) has emerged as a non-invasive approach to identify atrial fibrillation (AF) driver sources. This paper aims to collect and review the current research literature on the ECGI inverse problem, summarize the research progress, and propose potential research directions for the future. METHODS AND RESULTS The effectiveness and feasibility of using ECGI to map AF driver sources may be influenced by several factors, such as inaccuracies in the atrial model due to heart movement or deformation, noise interference in high-density body surface potential (BSP), inconvenient and time-consuming BSP acquisition, errors in solving the inverse problem, and incomplete interpretation of the AF driving source information derived from the reconstructed epicardial potential. We review the current research progress on these factors and discuss possible improvement directions. Additionally, we highlight the limitations of ECGI itself, including the lack of a gold standard to validate the accuracy of ECGI technology in locating AF drivers and the challenges associated with guiding AF ablation based on post-processed epicardial potentials due to the intrinsic difference between epicardial and endocardial potentials. CONCLUSIONS Before performing ablation, ECGI can provide operators with predictive information about the underlying locations of AF driver by non-invasively and globally mapping the biatrial electrical activity. In the future, endocardial catheter mapping technology may benefit from the use of ECGI to enhance the diagnosis and ablation of AF.
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Affiliation(s)
- Zhang Yadan
- Institute of Biomedical Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, Guangdong, China
| | - Liang Jian
- Fuwai Hospital Chinese Academy of Medical Sciences, Shenzhen, Guangdong, China
| | - Wu Jian
- Institute of Biomedical Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen, Guangdong, China.
| | - Li Yifu
- Fuwai Hospital Chinese Academy of Medical Sciences, Shenzhen, Guangdong, China
| | - Li Haiying
- The University of Hong Kong-Shenzhen Hospital, Shenzhen, Guangdong, China
| | - Li Hairui
- The University of Hong Kong-Shenzhen Hospital, Shenzhen, Guangdong, China
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Jiang X, Toloubidokhti M, Bergquist J, Zenger B, Good WW, MacLeod RS, Wang L. Improving Generalization by Learning Geometry-Dependent and Physics-Based Reconstruction of Image Sequences. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023; 42:403-415. [PMID: 36306312 PMCID: PMC10079565 DOI: 10.1109/tmi.2022.3218170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Deep neural networks have shown promise in image reconstruction tasks, although often on the premise of large amounts of training data. In this paper, we present a new approach to exploit the geometry and physics underlying electrocardiographic imaging (ECGI) to learn efficiently with a relatively small dataset. We first introduce a non-Euclidean encoding-decoding network that allows us to describe the unknown and measurement variables over their respective geometrical domains. We then explicitly model the geometry-dependent physics in between the two domains via a bipartite graph over their graphical embeddings. We applied the resulting network to reconstruct electrical activity on the heart surface from body-surface potentials. In a series of generalization tasks with increasing difficulty, we demonstrated the improved ability of the network to generalize across geometrical changes underlying the data using less than 10% of training data and fewer variations of training geometry in comparison to its Euclidean alternatives. In both simulation and real-data experiments, we further demonstrated its ability to be quickly fine-tuned to new geometry using a modest amount of data.
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Zenger B, Bergquist JA, Busatto A, Good WW, Rupp LC, Sharma V, MacLeod RS. Tipping the scales of understanding: An engineering approach to design and implement whole-body cardiac electrophysiology experimental models. Front Physiol 2023; 14:1100471. [PMID: 36744034 PMCID: PMC9893785 DOI: 10.3389/fphys.2023.1100471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 01/02/2023] [Indexed: 01/21/2023] Open
Abstract
The study of cardiac electrophysiology is built on experimental models that span all scales, from ion channels to whole-body preparations. Novel discoveries made at each scale have contributed to our fundamental understanding of human cardiac electrophysiology, which informs clinicians as they detect, diagnose, and treat complex cardiac pathologies. This expert review describes an engineering approach to developing experimental models that is applicable across scales. The review also outlines how we applied the approach to create a set of multiscale whole-body experimental models of cardiac electrophysiology, models that are driving new insights into the response of the myocardium to acute ischemia. Specifically, we propose that researchers must address three critical requirements to develop an effective experimental model: 1) how the experimental model replicates and maintains human physiological conditions, 2) how the interventions possible with the experimental model capture human pathophysiology, and 3) what signals need to be measured, at which levels of resolution and fidelity, and what are the resulting requirements of the measurement system and the access to the organs of interest. We will discuss these requirements in the context of two examples of whole-body experimental models, a closed chest in situ model of cardiac ischemia and an isolated-heart, torso-tank preparation, both of which we have developed over decades and used to gather valuable insights from hundreds of experiments.
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Affiliation(s)
- Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, United States
- Nora Eccles Harrison Cardiovascular Research and Training Institute, The University of Utah, Salt Lake City, UT, United States
- Spencer Eccles School of Medicine, University of Utah, Salt Lake City, UT, United States
| | - Jake A. Bergquist
- Scientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, United States
- Nora Eccles Harrison Cardiovascular Research and Training Institute, The University of Utah, Salt Lake City, UT, United States
- Department of Biomedical Engineering, College of Engineering, University of Utah, Salt Lake City, UT, United States
| | - Anna Busatto
- Scientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, United States
- Nora Eccles Harrison Cardiovascular Research and Training Institute, The University of Utah, Salt Lake City, UT, United States
- Department of Biomedical Engineering, College of Engineering, University of Utah, Salt Lake City, UT, United States
| | | | - Lindsay C. Rupp
- Scientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, United States
- Nora Eccles Harrison Cardiovascular Research and Training Institute, The University of Utah, Salt Lake City, UT, United States
- Department of Biomedical Engineering, College of Engineering, University of Utah, Salt Lake City, UT, United States
| | - Vikas Sharma
- Spencer Eccles School of Medicine, University of Utah, Salt Lake City, UT, United States
| | - Rob S. MacLeod
- Scientific Computing and Imaging Institute, University of Utah, Salt Lake City, UT, United States
- Nora Eccles Harrison Cardiovascular Research and Training Institute, The University of Utah, Salt Lake City, UT, United States
- Department of Biomedical Engineering, College of Engineering, University of Utah, Salt Lake City, UT, United States
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Bergquist JA, Coll-Font J, Zenger B, Rupp LC, Good WW, Brooks DH, MacLeod RS. Reconstruction of cardiac position using body surface potentials. Comput Biol Med 2022; 142:105174. [PMID: 35065409 PMCID: PMC8844250 DOI: 10.1016/j.compbiomed.2021.105174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 12/22/2021] [Accepted: 12/23/2021] [Indexed: 11/03/2022]
Abstract
Electrocardiographic imaging (ECGI) is a noninvasive technique to assess the bioelectric activity of the heart which has been applied to aid in clinical diagnosis and management of cardiac dysfunction. ECGI is built on mathematical models that take into account several patient specific factors including the position of the heart within the torso. Errors in the localization of the heart within the torso, as might arise due to natural changes in heart position from respiration or changes in body position, contribute to errors in ECGI reconstructions of the cardiac activity, thereby reducing the clinical utility of ECGI. In this study we present a novel method for the reconstruction of cardiac geometry utilizing noninvasively acquired body surface potential measurements. Our geometric correction method simultaneously estimates the cardiac position over a series of heartbeats by leveraging an iterative approach which alternates between estimating the cardiac bioelectric source across all heartbeats and then estimating cardiac positions for each heartbeat. We demonstrate that our geometric correction method is able to reduce geometric error and improve ECGI accuracy in a wide range of testing scenarios. We examine the performance of our geometric correction method using different activation sequences, ranges of cardiac motion, and body surface electrode configurations. We find that after geometric correction resulting ECGI solution accuracy is improved and variability of the ECGI solutions between heartbeats is substantially reduced.
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Affiliation(s)
- Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Department of Biomedical Engineering, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States.
| | - Jaume Coll-Font
- Cardiovascular Bioengineering Imaging (CBM) Lab at the Massachusetts General Hospital, Boston, MA, United States
| | - Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Department of Biomedical Engineering, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; School of Medicine, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States
| | - Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Department of Biomedical Engineering, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States
| | | | - Dana H Brooks
- Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, United States
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States; Department of Biomedical Engineering, University of Utah, 72 Central Campus Dr, Salt Lake City, UT, 84112, United States
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Good WW, Zenger B, Bergquist JA, Rupp LC, Gillette K, Angel N, Chou D, Plank G, MacLeod RS. Combining endocardial mapping and electrocardiographic imaging (ECGI) for improving PVC localization: A feasibility study. J Electrocardiol 2021; 69S:51-54. [PMID: 34649726 PMCID: PMC9014370 DOI: 10.1016/j.jelectrocard.2021.08.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 08/10/2021] [Accepted: 08/13/2021] [Indexed: 12/29/2022]
Abstract
INTRODUCTION Accurate reconstruction of cardiac activation wavefronts is crucial for clinical diagnosis, management, and treatment of cardiac arrhythmias. Furthermore, reconstruction of activation profiles within the intramural myocardium has long been impossible because electrical mapping was only performed on the endocardial surface. Recent advancements in electrocardiographic imaging (ECGI) have made endocardial and epicardial activation mapping possible. We propose a novel approach to use both endocardial and epicardial mapping in a combined approach to reconstruct intramural activation times. OBJECTIVE To implement and validate a combined epicardial/endocardial intramural activation time reconstruction technique. METHODS We used 11 simulations of ventricular activation paced from sites throughout myocardial wall and extracted endocardial and epicardial activation maps at approximate clinical resolution. From these maps, we interpolated the activation times through the myocardium using thin-plate-spline radial basis functions. We evaluated activation time reconstruction accuracy using root-mean-squared error (RMSE) of activation times and the percent of nodes within 1 ms of the ground truth. RESULTS Reconstructed intramural activation times showed an RMSE and percentage of nodes within 1 ms of the ground truth simulations of 3 ms and 70%, respectively. In the worst case, the RMSE and percentage of nodes were 4 ms and 60%, respectively. CONCLUSION We showed that a simple, yet effective combination of clinical endocardial and epicardial activation maps can accurately reconstruct intramural wavefronts. Furthermore, we showed that this approach provided robust reconstructions across multiple intramural stimulation sites.
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Affiliation(s)
- Wilson W Good
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA; Acutus Medical, Carlsbad, CA, USA.
| | - Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
| | - Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
| | - Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
| | - Karli Gillette
- Institute of Biophysics, Medical University of Graz, Graz, Austria
| | | | | | - Gernot Plank
- Institute of Biophysics, Medical University of Graz, Graz, Austria
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
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Bergquist JA, Coll-Font J, Zenger B, Rupp LC, Good WW, Brooks DH, MacLeod RS. Simultaneous Multi-Heartbeat ECGI Solution with a Time-Varying Forward Model: a Joint Inverse Formulation. FUNCTIONAL IMAGING AND MODELING OF THE HEART : ... INTERNATIONAL WORKSHOP, FIMH ..., PROCEEDINGS. FIMH 2021; 12738:493-502. [PMID: 34447971 PMCID: PMC8385662 DOI: 10.1007/978-3-030-78710-3_47] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Electrocardiographic imaging (ECGI) is an effective tool for noninvasive diagnosis of a range of cardiac dysfunctions. ECGI leverages a model of how cardiac bioelectric sources appear on the torso surface (the forward problem) and uses recorded body surface potential signals to reconstruct the bioelectric source (the inverse problem). Solutions to the inverse problem are sensitive to noise and variations in the body surface potential (BSP) recordings such as those caused by changes or errors in cardiac position. Techniques such as signal averaging seek to improve ECGI solutions by incorporating BSP signals from multiple heartbeats into an averaged BSP with a higher SNR to use when estimating the cardiac bioelectric source. However, signal averaging is limited when it comes to addressing sources of BSP variability such as beat to beat differences in the forward solution. We present a novel joint inverse formulation to solve for the cardiac source given multiple BSP recordings and known changes in the forward solution, here changes in the heart position. We report improved ECGI accuracy over signal averaging and averaged individual inverse solutions using this joint inverse formulation across multiple activation sequence types and regularization techniques with measured canine data and simulated heart motion. Our joint inverse formulation builds upon established techniques and consequently can easily be applied with many existing regularization techniques, source models, and forward problem formulations.
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Affiliation(s)
- Jake A Bergquist
- Biomedical Engineering Department, University of Utah, SLC, UT, 84112, USA
| | - Jaume Coll-Font
- Cardiovascular Bioengineering & Imaging Lab, Massachusetts General Hospital, and Harvard Medical School, Boston, MA, USA
| | - Brian Zenger
- Biomedical Engineering Department, University of Utah, SLC, UT, 84112, USA
| | - Lindsay C Rupp
- Biomedical Engineering Department, University of Utah, SLC, UT, 84112, USA
| | - Wilson W Good
- Biomedical Engineering Department, University of Utah, SLC, UT, 84112, USA
| | - Dana H Brooks
- Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, USA
| | - Rob S MacLeod
- Biomedical Engineering Department, University of Utah, SLC, UT, 84112, USA
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Bergquist JA, Good WW, Zenger B, Tate JD, Rupp LC, MacLeod RS. The electrocardiographic forward problem: A benchmark study. Comput Biol Med 2021; 134:104476. [PMID: 34051453 DOI: 10.1016/j.compbiomed.2021.104476] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 05/02/2021] [Accepted: 05/03/2021] [Indexed: 11/30/2022]
Abstract
BACKGROUND Electrocardiographic forward problems are crucial components for noninvasive electrocardiographic imaging (ECGI) that compute torso potentials from cardiac source measurements. Forward problems have few sources of error as they are physically well posed and supported by mature numerical and computational techniques. However, the residual errors reported from experimental validation studies between forward computed and measured torso signals remain surprisingly high. OBJECTIVE To test the hypothesis that incomplete cardiac source sampling, especially above the atrioventricular (AV) plane is a major contributor to forward solution errors. METHODS We used a modified Langendorff preparation suspended in a human-shaped electrolytic torso-tank and a novel pericardiac-cage recording array to thoroughly sample the cardiac potentials. With this carefully controlled experimental preparation, we minimized possible sources of error, including geometric error and torso inhomogeneities. We progressively removed recorded signals from above the atrioventricular plane to determine how the forward-computed torso-tank potentials were affected by incomplete source sampling. RESULTS We studied 240 beats total recorded from three different activation sequence types (sinus, and posterior and anterior left-ventricular free-wall pacing) in each of two experiments. With complete sampling by the cage electrodes, all correlation metrics between computed and measured torso-tank potentials were above 0.93 (maximum 0.99). The mean root-mean-squared error across all beat types was also low, less than or equal to 0.10 mV. A precipitous drop in forward solution accuracy was observed when we included only cage measurements below the AV plane. CONCLUSION First, our forward computed potentials using complete cardiac source measurements set a benchmark for similar studies. Second, this study validates the importance of complete cardiac source sampling above the AV plane to produce accurate forward computed torso potentials. Testing ECGI systems and techniques with these more complete and highly accurate datasets will improve inverse techniques and noninvasive detection of cardiac electrical abnormalities.
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Affiliation(s)
- Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Wilson W Good
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; School of Medicine, University of Utah, SLC, UT, USA.
| | - Jess D Tate
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
| | - Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA; Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA; Department of Biomedical Engineering, University of Utah, SLC, UT, USA; School of Medicine, University of Utah, SLC, UT, USA
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Gisbert V, Jiménez-Serrano S, Roses-Albert E, Rodrigo M. Atrial location optimization by electrical measures for Electrocardiographic Imaging. Comput Biol Med 2020; 127:104031. [PMID: 33096296 DOI: 10.1016/j.compbiomed.2020.104031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 09/07/2020] [Accepted: 10/01/2020] [Indexed: 12/18/2022]
Abstract
BACKGROUND The Electrocardiographic Imaging (ECGI) technique, used to non-invasively reconstruct the epicardial electrical activity, requires an accurate model of the atria and torso anatomy. Here we evaluate a new automatic methodology able to locate the atrial anatomy within the torso based on an intrinsic electrical parameter of the ECGI solution. METHODS In 28 realistic simulations of the atrial electrical activity, we randomly displaced the atrial anatomy for ±2.5 cm and ±30° on each axis. An automatic optimization method based on the L-curve curvature was used to estimate the original position using exclusively non-invasive data. RESULTS The automatic optimization algorithm located the atrial anatomy with a deviation of 0.5 ± 0.5 cm in position and 16.0 ± 10.7° in orientation. With these approximate locations, the obtained electrophysiological maps reduced the average error in atrial rate measures from 1.1 ± 1.1 Hz to 0.5 ± 1.0 Hz and in the phase singularity position from 7.2 ± 4.0 cm to 1.6 ± 1.7 cm (p < 0.01). CONCLUSIONS This proposed automatic optimization may help to solve spatial inaccuracies provoked by cardiac motion or respiration, as well as to use ECGI on torso and atrial anatomies from different medical image systems.
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Affiliation(s)
- Víctor Gisbert
- ITACA Institute, Universitat Politècnica de València, Valencia, Spain
| | - Santiago Jiménez-Serrano
- ITACA Institute, Universitat Politècnica de València, Valencia, Spain; Proteu Tecnologia Aplicada Coop V, Spain
| | - Eduardo Roses-Albert
- ITACA Institute, Universitat Politècnica de València, Valencia, Spain; Proteu Tecnologia Aplicada Coop V, Spain
| | - Miguel Rodrigo
- ITACA Institute, Universitat Politècnica de València, Valencia, Spain.
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Bergquist JA, Coll-Font J, Zenger B, Rupp LC, Good WW, Brooks DH, MacLeod RS. Improving Localization of Cardiac Geometry Using ECGI. COMPUTING IN CARDIOLOGY 2020; 47:10.22489/cinc.2020.273. [PMID: 33937429 PMCID: PMC8082332 DOI: 10.22489/cinc.2020.273] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
INTRODUCTION Electrocardiographic imaging (ECGI) requires a model of the torso, and inaccuracy in the position of the heart is a known source of error. We previously presented a method to localize the heart when body and heart surface potentials are known. The goal of this study is to extend this approach to only use body surface potentials. METHODS We used an iterative coordinate descent optimization to estimate the positions of the heart for several consecutive heartbeats relying on the assumption that the epicardial potential sequence is the same in each beat. The method was tested with data synthesized using measurements from a isolated-heart, torso-tank preparation. Improvement was evaluated in terms of both heart localization and ECGI accuracy. RESULTS The geometric correction resulted in cardiac geometries closely matching ground truth geometry. ECGI accuracy increased dramatically by all metrics using the corrected geometry. DISCUSSION Future studies will employ more realistic animal models and then human subjects. Success could impact clinical ECGI by reducing errors from respiratory movement and perhaps decrease imaging requirements, reducing both cost and logistical difficulty of ECGI, widening clinical applicability.
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Affiliation(s)
- Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Jaume Coll-Font
- Cardiovascular Bioengineering & Imaging (CBM) Lab at the Massachusetts General Hospital, Boston (MA) and Harvard Medical School, Boston, MA, USA
| | - Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
- School of Medicine, University of Utah, SLC, UT, USA
| | - Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Wilson W Good
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Dana H Brooks
- Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, USA
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
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11
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Bergquist JA, Zenger B, Good WW, Rupp LC, Bear LR, MacLeod RS. Novel Experimental Preparation to Assess Electrocardiographic Imaging Reconstruction Techniques. COMPUTING IN CARDIOLOGY 2020; 47:10.22489/cinc.2020.458. [PMID: 33937428 PMCID: PMC8082331 DOI: 10.22489/cinc.2020.458] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Electrocardiographic imaging (ECGI) systems are still plagued by a myriad of controllable and uncontrollable sources of error, which makes studying and improving these systems difficult. To mitigate these errors, we developed a novel experimental preparation using a rigid pericardiac cage suspended in a torso-shaped electrolytic tank. The 256-electrode cage was designed to record signals 0.5-1.0 cm above the entire epicardial surface of an isolated heart. The cage and heart were fixed in a 192-electrode torso tank filled with electrolyte with predetermined conductivity. The resulting signals served as ground truth for ECGI performed using the boundary element method (BEM) and method of fundamental solutions (MFS) with three regularization techniques: Tikhonov zero-order (Tik0), Tikhonov second-order (Tik2), truncated singular value decomposition (TSVD). Each ECGI regularization technique reconstructed cage potentials from recorded torso potentials well with spatial correlation above 0.7, temporal correlation above 0.8, and root mean squared error values below 0.7 mV. The earliest site of activation was best identified by MFS using Tik0, which localized it to within a range of 1.9 and 4.8 cm. Our novel experimental preparation has shown unprecedented agreement with simulations and represents a new standard for ECGI validation studies.
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Affiliation(s)
- Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Brian Zenger
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
- School of Medicine, University of Utah, SLC, UT, USA
| | - Wilson W Good
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Laura R Bear
- IHU LIRYC, Université de Bordeaux, CRCTB Inserm U1045, Bordeaux, France
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
- Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA
- Department of Biomedical Engineering, University of Utah, SLC, UT, USA
- School of Medicine, University of Utah, SLC, UT, USA
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12
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Rupp LC, Liu Z, Bergquist JA, Rampersad S, White D, Tate JD, Brooks DH, Narayan A, MacLeod RS. Using UncertainSCI to Quantify Uncertainty in Cardiac Simulations. COMPUTING IN CARDIOLOGY 2020; 47:10.22489/cinc.2020.275. [PMID: 36845870 PMCID: PMC9956381 DOI: 10.22489/cinc.2020.275] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Cardiac simulations have become increasingly accurate at representing physiological processes. However, simulations often fail to capture the impact of parameter uncertainty in predictions. Uncertainty quantification (UQ) is a set of techniques that captures variability in simulation output based on model assumptions. Although many UQ methods exist, practical implementation can be challenging. We created UncertainSCI, a UQ framework that uses polynomial chaos (PC) expansion to model the forward stochastic error in simulations parameterized with random variables. UncertainSCI uses non-intrusive methods that parsimoniously explores parameter space. The result is an efficient, stable, and accurate PC emulator that can be analyzed to compute output statistics. We created a Python API to run UncertainSCI, minimizing user inputs needed to guide the UQ process. We have implemented UncertainSCI to: (1) quantify the sensitivity of computed torso potentials using the boundary element method to uncertainty in the heart position, and (2) quantify the sensitivity of computed torso potentials using the finite element method to uncertainty in the conductivities of biological tissues. With UncertainSCI, it is possible to evaluate the robustness of simulations to parameter uncertainty and establish realistic expectations on the accuracy of the model results and the clinical guidance they can provide.
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Affiliation(s)
- Lindsay C Rupp
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA.,Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA.,Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Zexin Liu
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA.,Department of Mathematics, University of Utah, SLC, UT, USA
| | - Jake A Bergquist
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA.,Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA.,Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Sumientra Rampersad
- Department of Electrical and Computer Engineering, Northeastern, BOS, MA, USA
| | - Dan White
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA
| | - Jess D Tate
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA.,Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA.,Department of Biomedical Engineering, University of Utah, SLC, UT, USA
| | - Dana H Brooks
- Department of Electrical and Computer Engineering, Northeastern, BOS, MA, USA
| | - Akil Narayan
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA.,Department of Mathematics, University of Utah, SLC, UT, USA
| | - Rob S MacLeod
- Scientific Computing and Imaging Institute, University of Utah, SLC, UT, USA.,Nora Eccles Cardiovascular Research and Training Institute, University of Utah, SLC, UT, USA.,Department of Biomedical Engineering, University of Utah, SLC, UT, USA
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13
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Tate J, van Dam E, Good W, Bergquist J, van Dam P, MacLeod R. A Unified Pipeline for ECG Imaging Testing. COMPUTING IN CARDIOLOGY 2020; 46. [PMID: 32201705 DOI: 10.22489/cinc.2019.437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The Consortium for ECG Imaging (CEI) has formed several collaborative projects to evaluate and improve technical aspects of Electrocardiographic Imaging (ECGI), but these efforts are not yet implemented into an integrated software framework. We developed a framework to unify the multiple techniques and stages of ECGI into one pipeline. This framework merges existing open source packages: SCIRun, a problem solving environment; the Forward/Inverse toolkit, a series of SCIRun modules for ECGI; and PFEIFER, a cardiac signal pre-processing tool. The Unified ECGI Toolkit (UETK), combined with the EDGAR dataset, allows users to test and validate a vast array of parameters within each stage of the ECGI pipeline. We expect that this unified tool will help introduce new researchers to ECGI, facilitate interaction between the various groups working on ECGI, and establish a common approach for researchers to test and validate their ECGI techniques.
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Affiliation(s)
- Jess Tate
- University of Utah, Salt Lake City, Utah, USA
| | | | - Wilson Good
- University of Utah, Salt Lake City, Utah, USA
| | | | | | - Rob MacLeod
- University of Utah, Salt Lake City, Utah, USA
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Perez Alday EA, Whittaker DG, Benson AP, Colman MA. Effects of Heart Rate and Ventricular Wall Thickness on Non-invasive Mapping: An in silico Study. Front Physiol 2019; 10:308. [PMID: 31024330 PMCID: PMC6460935 DOI: 10.3389/fphys.2019.00308] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Accepted: 03/07/2019] [Indexed: 01/08/2023] Open
Abstract
Background: Non-invasive cardiac mapping—also known as Electrocardiographic imaging (ECGi)—is a novel, painless and relatively economic method to map the electrical activation and repolarization patterns of the heart, providing a valuable tool for early identification and diagnosis of conduction abnormalities and arrhythmias. Moreover, the ability to obtain information on cardiac electrical activity non-invasively using ECGi provides the potential for a priori information to guide invasive surgical procedures, improving success rates, and reducing procedure time. Previous studies have shown the influence of clinical variables, such as heart rate, heart size, endocardial wall, and body composition on surface electrocardiogram (ECG) measurements. The influence of clinical variables on the ECG variability has provided information on cardiovascular control and its abnormalities in various pathologies. However, the effects of such clinical variables on the Body Surface Potential (BSP) and ECGi maps have yet to be systematically investigated. Methods: In this study we investigated the effects of heart size, intracardiac thickness, and heart rate on BSP and ECGi maps using a previously-developed 3D electrophysiologically-detailed ventricles-torso model. The inverse solution was solved using the three different Tikhonov regularization methods. Results: Through comparison of multiple measures of error/accuracy on the ECGi reconstructions, our results showed that using different heart geometries to solve the forward and inverse problems produced a larger estimated focal excitation location. An increase of ~2 mm in the Euclidean distance error was observed for an increase in the heart size. However, the estimation of the location of focal activity was still able to be obtained. Similarly, a Euclidean distance increase was observed when the order of regularization was reduced. For the case of activation maps reconstructed at the same ectopic focus location but different heart rates, an increase in the errors and Euclidean distance was observed when the heart rate was increased. Conclusions: Non-invasive cardiac mapping can still provide useful information about cardiac activation patterns for the cases when a different geometry is used for the inverse problem compared to the one used for the forward solution; rapid pacing rates can induce order-dependent errors in the accuracy of reconstruction.
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Affiliation(s)
- Erick Andres Perez Alday
- Knight Cardiovascular Institute, Oregon Health & Science University, Portland, OR, United States
| | - Dominic G Whittaker
- School of Biomedical Science and Multidisciplinary Cardiovascular Research Centre, University of Leeds, Leeds, United Kingdom
| | - Alan P Benson
- School of Biomedical Science and Multidisciplinary Cardiovascular Research Centre, University of Leeds, Leeds, United Kingdom
| | - Michael A Colman
- School of Biomedical Science and Multidisciplinary Cardiovascular Research Centre, University of Leeds, Leeds, United Kingdom
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