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Chen J, Ren B, Bian C, Qin D, Zhang L, Li J, Wei J, Wang A, Huo J, Gang H. Transcriptomic and metabolomic analyses reveal molecular mechanisms associated with the natural abscission of blue honeysuckle (Lonicera caerulea L.) ripe fruits. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 199:107740. [PMID: 37150009 DOI: 10.1016/j.plaphy.2023.107740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 04/30/2023] [Accepted: 05/01/2023] [Indexed: 05/09/2023]
Abstract
Blue honeysuckle (Lonicera caerulea L.) is rich in phenolic compounds and has an extremely high nutritional value. Fruit abscission in the ripe period significantly impacts production and economic benefits. However, the mechanism associated with the abscission of blue honeysuckle fruit remains largely unknown. The easy-abscission cultivar 'HSY' and the hard-abscission cultivar 'Berel' were selected as plant materials. Anatomical changes of the 'HSY' fruit abscission zone (FAZ) during the abscission mainly included cell expansion, detachment, and collapse. Active changes in cell wall-degrading enzyme activity between 39 days postanthesis (DPA) and 55 DPA in 'HSY' FAZ, but not in 'Berel', suggest a critical role for cell-wall-degrading enzymes in regulating abscission. Transcriptome and metabolome analyses revealed that the genes and metabolites responding to abscission mainly act on pathways such as plant hormone signal transduction, starch and sucrose metabolism, pentose and glucuronate interconversions, and phenylpropanoid biosynthesis. The regulatory pathways of fruit abscission are mainly summarized into two parts: phytohormone synthesis and signal transduction, FAZ cell wall metabolism. In this study, 46 key genes related to plant hormone response, 45 key genes involved in FAZ cell wall metabolism, and 73 transcription factors were screened. Quantitative real-time PCR (qRT-PCR) assessed the expression pattern of 12 selected candidate genes, demonstrating the accuracy of the transcriptome data and elucidating the expression patterns of key candidate genes during growth and development. This study will provide an essential resource for understanding the molecular regulatory mechanism of fruit abscission in the blue honeysuckle.
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Affiliation(s)
- Jing Chen
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China
| | - Bingbing Ren
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China
| | - Chunyang Bian
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China
| | - Dong Qin
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China; Heilongjiang Institute of Green Food Science, Harbin, 150000, Heilongjiang, China
| | - Lijun Zhang
- Heilongjiang Institute of Green Food Science, Harbin, 150000, Heilongjiang, China
| | - Jiacheng Li
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China
| | - Jia Wei
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China
| | - Aoxue Wang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China
| | - Junwei Huo
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China; Heilongjiang Institute of Green Food Science, Harbin, 150000, Heilongjiang, China
| | - Huixin Gang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China; National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, Northeast Agricultural University, Harbin, 150030, China; Heilongjiang Institute of Green Food Science, Harbin, 150000, Heilongjiang, China.
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Lu L, Arif S, Yu JM, Lee JW, Park YH, Tucker ML, Kim J. Involvement of IDA-HAE Module in Natural Development of Tomato Flower Abscission. PLANTS (BASEL, SWITZERLAND) 2023; 12:185. [PMID: 36616314 PMCID: PMC9823658 DOI: 10.3390/plants12010185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 12/14/2022] [Accepted: 12/27/2022] [Indexed: 06/17/2023]
Abstract
The unwanted detachment of organs such as flowers, leaves, and fruits from the main body of a plant (abscission) has significant effects on agricultural practice. Both timely and precise regulation of organ abscission from a plant is crucial as it influences the agricultural yield. The tomato (Solanum lycopersicum) has become a model system for research on organ abscission. Here, we characterized four tomato natural abscission variants named jointless (j), functionally impaired jointless (fij), functionally impaired jointless like (fij like), and normal joint (NJ), based on their cellular features within the flower abscission zones (AZ). Using eight INFLORESCENCE DEFICIENT IN ABSCISSION (SlIDA) genes and eight HAESA genes (SlHAE) identified in the genome sequence of tomato, we analyzed the pattern of gene expression during flower abscission. The AZ-specific expression for three tomato abscission polygalacturonases (SlTAPGs) in the development of flower AZ, and the progression of abscission validated our natural abscission system. Compared to that of j, fij, and fij like variants, the AZ-specific expression for SlIDA, SlIDL2, SlIDL3, SlIDL4, and SlIDL5 in the NJ largely corelated and increased with the process of abscission. Of eight SlHAE genes examined, the expression for SlHSL6 and SlHSL7 were found to be AZ-specific and increased as abscission progressed in the NJ variant. Unlike the result of gene expression obtained from natural abscission system, an in silico analysis of transcriptional binding sites uncovered that SlIDA genes (SlIDA, SlIDL6, and SlIDL7) are predominantly under the control of environmental stress, while most of the SlHSL genes are affiliated with the broader context in developmental processes and stress responses. Our result presents the potential bimodal transcriptional regulation of the tomato IDA-HAE module associated with flower abscission in tomatoes.
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Affiliation(s)
- Lu Lu
- Department of Horticultural Science, Chungnam National University, Daejeon 34134, Republic of Korea
| | - Samiah Arif
- Department of Horticultural Science, Chungnam National University, Daejeon 34134, Republic of Korea
| | - Jun Myoung Yu
- Department of Applied Biology, Chungnam National University, Daejeon 34134, Republic of Korea
| | - June Woo Lee
- Department of Horticultural Bioscience, Pusan National University, Miryang 50463, Republic of Korea
- Quality Assurance Team, Quality Assurance Department, Nongwoobio Co., Ltd., Yeoju 12655, Republic of Korea
| | - Young-Hoon Park
- Department of Horticultural Bioscience, Pusan National University, Miryang 50463, Republic of Korea
| | - Mark Leo Tucker
- Soybean Genomics and Improvement Lab, Agriculture Research Service, United States Department of Agriculture, Building 006, BARC-West, Beltsville, MD 20705, USA
| | - Joonyup Kim
- Department of Horticultural Science, Chungnam National University, Daejeon 34134, Republic of Korea
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Cheng L, Li R, Wang X, Ge S, Wang S, Liu X, He J, Jiang CZ, Qi M, Xu T, Li T. A SlCLV3-SlWUS module regulates auxin and ethylene homeostasis in low light-induced tomato flower abscission. THE PLANT CELL 2022; 34:4388-4408. [PMID: 35972422 PMCID: PMC9614458 DOI: 10.1093/plcell/koac254] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 08/03/2022] [Indexed: 06/12/2023]
Abstract
Premature abscission of flowers and fruits triggered by low light stress can severely reduce crop yields. However, the underlying molecular mechanism of this organ abscission is not fully understood. Here, we show that a gene (SlCLV3) encoding CLAVATA3 (CLV3), a peptide hormone that regulates stem cell fate in meristems, is highly expressed in the pedicel abscission zone (AZ) in response to low light in tomato (Solanum lycopersicum). SlCLV3 knockdown and knockout lines exhibit delayed low light-induced flower drop. The receptor kinases SlCLV1 and BARELY ANY MERISTEM1 function in the SlCLV3 peptide-induced low light response in the AZ to decrease expression of the transcription factor gene WUSCHEL (SlWUS). DNA affinity purification sequencing identified the transcription factor genes KNOX-LIKE HOMEDOMAIN PROTEIN1 (SlKD1) and FRUITFULL2 (SlFUL2) as SlWUS target genes. Our data reveal that low light reduces SlWUS expression, resulting in higher SlKD1 and SlFUL2 expression in the AZ, thereby perturbing the auxin response gradient and causing increased ethylene production, eventually leading to the initiation of abscission. These results demonstrate that the SlCLV3-SlWUS signaling pathway plays a central role in low light-induced abscission by affecting auxin and ethylene homeostasis.
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Affiliation(s)
- Lina Cheng
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Ruizhen Li
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Xiaoyang Wang
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Siqi Ge
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Sai Wang
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Xianfeng Liu
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Jing He
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Cai-Zhong Jiang
- Crops Pathology and Genetic Research Unit, United States Department of Agriculture Agricultural Research Service, Albany, California 95616, USA
- Department of Plant Sciences, University of California, Los Angeles, California 95616, USA
| | - Mingfang Qi
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Tao Xu
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
| | - Tianlai Li
- College of Horticulture, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang, China
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Mangena P. Evolving role of synthetic cytokinin 6-benzyl adenine for drought stress tolerance in soybean (Glycine max L. Merr.). FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.992581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The enhanced growth and productivity of soybeans during the past decades were possible due to the application of agrichemicals such as bio-fertilizers, chemical fertilizers, and the use of high yielding, as well as disease resistant transgenic and non-transgenic varieties. Agrichemicals applied as seed primers, plant protectants, and growth regulators, however, had a diminutive significance on growth and productivity improvements across the globe. The utilization of plant growth regulators (PGRs) for vegetative growth, reproduction and yield quality improvements remains unexplored, particularly, the use of cytokinins such as 6-benzyl adenine (6-BAP) to improve soybean response to abiotic stresses. Therefore, an understanding of the role of 6-BAP in the mediation of an array of adaptive responses that provide plants with the ability to withstand abiotic stresses must be thoroughly investigated. Such mitigative effects will play a critical role in encouraging exogenous application of plant hormones like 6-BAP as a mechanism for overcoming drought stress related effects in soybean. This paper discusses the evolving role of synthetic cytokinin 6-bezyl adenine in horticulture, especially the implications of its exogenous applications in soybean to confer tolerance to drought stress.
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Liu X, Cheng L, Li R, Cai Y, Wang X, Fu X, Dong X, Qi M, Jiang CZ, Xu T, Li T. The HD-Zip transcription factor SlHB15A regulates abscission by modulating jasmonoyl-isoleucine biosynthesis. PLANT PHYSIOLOGY 2022; 189:2396-2412. [PMID: 35522030 PMCID: PMC9342995 DOI: 10.1093/plphys/kiac212] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 04/04/2022] [Indexed: 05/08/2023]
Abstract
Plant organ abscission, a process that is important for development and reproductive success, is inhibited by the phytohormone auxin and promoted by another phytohormone, jasmonic acid (JA). However, the molecular mechanisms underlying the antagonistic effects of auxin and JA in organ abscission are unknown. We identified a tomato (Solanum lycopersicum) class III homeodomain-leucine zipper transcription factor, HOMEOBOX15A (SlHB15A), which was highly expressed in the flower pedicel abscission zone and induced by auxin. Knocking out SlHB15A using clustered regularly interspaced short palindromic repeats-associated protein 9 technology significantly accelerated abscission. In contrast, overexpression of microRNA166-resistant SlHB15A (mSlHB15A) delayed abscission. RNA sequencing and reverse transcription-quantitative PCR analyses showed that knocking out SlHB15A altered the expression of genes related to JA biosynthesis and signaling. Furthermore, functional analysis indicated that SlHB15A regulates abscission by depressing JA-isoleucine (JA-Ile) levels through inhabiting the expression of JASMONATE-RESISTANT1 (SlJAR1), a gene involved in JA-Ile biosynthesis, which could induce abscission-dependent and abscission-independent ethylene signaling. SlHB15A bound directly to the SlJAR1 promoter to silence SlJAR1, thus delaying abscission. We also found that flower removal enhanced JA-Ile content and that application of JA-Ile severely impaired the inhibitory effects of auxin on abscission. These results indicated that SlHB15A mediates the antagonistic effect of auxin and JA-Ile during tomato pedicel abscission, while auxin inhibits abscission through the SlHB15A-SlJAR1 module.
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Affiliation(s)
- Xianfeng Liu
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Lina Cheng
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Ruizhen Li
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Yue Cai
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Xiaoyang Wang
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Xin Fu
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Xiufen Dong
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Mingfang Qi
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Ministry of Education, Shenyang 110866, China
| | - Cai-Zhong Jiang
- Department of Plant Sciences, University of California at Davis, Davis, California 95616, USA
- Crops Pathology and Genetic Research Unit, USDA-ARS, Davis, California 95616, USA
| | - Tao Xu
- Author for correspondence: (T.L.), (T.X.)
| | - Tianlai Li
- Author for correspondence: (T.L.), (T.X.)
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Chen L, Liu A, Guo Z, Jiang H, Luo L, Gao J, Li D, Ye S, Guo N. Cloning and Bioinformatics Analysis of GhArfGAP in Cotton ( Gossypium hirsutum) Boll Abscission Layer With Ethylene Treatment. FRONTIERS IN PLANT SCIENCE 2022; 13:841161. [PMID: 35812965 PMCID: PMC9263981 DOI: 10.3389/fpls.2022.841161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 03/02/2022] [Indexed: 06/15/2023]
Abstract
With the continuous growth of the human population, the demand for fiber is also rising sharply. As one of the main fiber plants available globally, cotton fiber yield (Gossypium hirsutum) is affected by boll abscission, which is related to the formation of the abscission layer. Therefore, we explored the formation of the abscission layer in cotton. The formation of the abscission layer in the cotton boll stalk was promoted by exogenous ethylene. It was found that both the number of the Golgi apparatus and the number of stacking layers increased in the dissociated cells. The GhArfGAP gene family in cotton was screened by the bioinformatics method, and the species and evolutionary relationship of the GhArfGAP gene family were analyzed. qRT-PCR showed that GhArfGAP13, GhArfGAP15, GhArfGAP25, and GhArfGAP34 in cotton had spatiotemporal-specific expression patterns. Subcellular localization suggested that GhArfGAP25 played a role in the Golgi apparatus. The expression of GhArfGAP25 in transgenic Arabidopsis thaliana is increased in the roots, stems, and leaves. Finally, we found that ethylene could induce the formation of the abscission layer in cotton. GhArfGAP13, GhArfGAP15, GhArfGAP25, and GhArfGAP34 might regulate the changes in the Golgi apparatus in the abscission layer. Taken together, the findings provide new ideas for the study of the formation of cotton abscission.
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Affiliation(s)
- Long Chen
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - AnFeng Liu
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - ZiWen Guo
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - Hui Jiang
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - Ling Luo
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - JunShan Gao
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - DaHui Li
- School of Life Sciences, Anhui Agricultural University, Hefei, China
| | - SiHong Ye
- Cotton Research Institute of Anhui Academy of Agricultural Sciences, Hefei, China
| | - Ning Guo
- School of Life Sciences, Anhui Agricultural University, Hefei, China
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Qiu Z, Wen Z, Hou Q, Qiao G, Yang K, Hong Y, Wen X. Cross-talk between transcriptome, phytohormone and HD-ZIP gene family analysis illuminates the molecular mechanism underlying fruitlet abscission in sweet cherry (Prunus avium L). BMC PLANT BIOLOGY 2021; 21:173. [PMID: 33838661 PMCID: PMC8035788 DOI: 10.1186/s12870-021-02940-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Accepted: 03/25/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND The shedding of premature sweet cherry (Prunus avium L) fruitlet has significantly impacted production, which in turn has a consequential effect on economic benefits. RESULT To better understand the molecular mechanism of sweet cherry fruitlet abscission, pollen viability and structure had been observed from the pollination trees. Subsequently, the morphological characters of the shedding fruitlet, the plant hormone titers of dropping carpopodium, the transcriptome of the abscising carpopodium, as well as the HD-ZIP gene family were investigated. These findings showed that the pollens giving rise to heavy fruitlet abscission were malformed in structure, and their viability was lower than the average level. The abscising fruitlet and carpopodium were characterized in red color, and embryos of abscising fruitlet were aborted, which was highly ascribed to the low pollen viability and malformation. Transcriptome analysis showed 6462 were significantly differentially expressed, of which 2456 genes were up-regulated and 4006 down-regulated in the abscising carpopodium. Among these genes, the auxin biosynthesis and signal transduction genes (α-Trp, AUX1), were down-regulated, while the 1-aminocyclopropane-1-carboxylate oxidase gene (ACO) affected in ethylene biosynthesis, was up-regulated in abscising carpopodium. About genes related to cell wall remodeling (CEL, PAL, PG EXP, XTH), were up-regulated in carpopodium abscission, which reflecting the key roles in regulating the abscission process. The results of transcriptome analysis considerably conformed with those of proteome analysis as documented previously. In comparison with those of the retention fruitlet, the auxin contents in abscising carpopodium were significantly low, which presumably increased the ethylene sensitivity of the abscission zone, conversely, the abscisic acid (ABA) accumulation was considerably higher in abscising carpopodium. Furthermore, the ratio of (TZ + IAA + GA3) / ABA also obviously lower in abscising carpopodium. Besides, the HD-ZIP gene family analysis showed that PavHB16 and PavHB18 were up-regulated in abscising organs. CONCLUSION Our findings combine morphology, cytology and transcriptional regulation to reveal the molecular mechanism of sweet cherry fruitlet abscission. It provides a new perspective for further study of plant organ shedding.
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Affiliation(s)
- Zhilang Qiu
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China
| | - Zhuang Wen
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China
| | - Qiandong Hou
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China
| | - Guang Qiao
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China
| | - Kun Yang
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China
| | - Yi Hong
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China
| | - Xiaopeng Wen
- Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), Collaborative Innovation Center for Mountain Ecology & Agro-Bioengineering (CICMEAB), Institute of Agro-bioengineering/ College of Life Sciences, Guizhou University, Guizhou Province, 550025, Guiyang, China.
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Du J, Lu S, Chai M, Zhou C, Sun L, Tang Y, Nakashima J, Kolape J, Wen Z, Behzadirad M, Zhong T, Sun J, Zhang Y, Wang Z. Functional characterization of PETIOLULE-LIKE PULVINUS (PLP) gene in abscission zone development in Medicago truncatula and its application to genetic improvement of alfalfa. PLANT BIOTECHNOLOGY JOURNAL 2021; 19:351-364. [PMID: 32816361 PMCID: PMC7868985 DOI: 10.1111/pbi.13469] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 07/29/2020] [Accepted: 08/07/2020] [Indexed: 05/05/2023]
Abstract
Alfalfa (Medicago sativa L.) is one of the most important forage crops throughout the world. Maximizing leaf retention during the haymaking process is critical for achieving superior hay quality and maintaining biomass yield. Leaf abscission process affects leaf retention. Previous studies have largely focused on the molecular mechanisms of floral organ, pedicel and seed abscission but scarcely touched on leaf and petiole abscission. This study focuses on leaf and petiole abscission in the model legume Medicago truncatula and its closely related commercial species alfalfa. By analysing the petiolule-like pulvinus (plp) mutant in M. truncatula at phenotypic level (breakstrength and shaking assays), microscopic level (scanning electron microscopy and cross-sectional analyses) and molecular level (expression level and expression pattern analyses), we discovered that the loss of function of PLP leads to an absence of abscission zone (AZ) formation and PLP plays an important role in leaflet and petiole AZ differentiation. Microarray analysis indicated that PLP affects abscission process through modulating genes involved in hormonal homeostasis, cell wall remodelling and degradation. Detailed analyses led us to propose a functional model of PLP in regulating leaflet and petiole abscission. Furthermore, we cloned the PLP gene (MsPLP) from alfalfa and produced RNAi transgenic alfalfa plants to down-regulate the endogenous MsPLP. Down-regulation of MsPLP results in altered pulvinus structure with increased leaflet breakstrength, thus offering a new approach to decrease leaf loss during alfalfa haymaking process.
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Affiliation(s)
- Juan Du
- Noble Research InstituteArdmoreOKUSA
- Institute for Agricultural BiosciencesOklahoma State UniversityArdmoreOKUSA
- College of Grassland Science and TechnologyChina Agricultural UniversityBeijingChina
| | - Shaoyun Lu
- College of Life SciencesSouth China Agricultural UniversityGuangzhouChina
| | - Maofeng Chai
- Noble Research InstituteArdmoreOKUSA
- Grassland Agri‐Husbandry Research CenterCollege of Grassland ScienceQingdao Agricultural UniversityQingdaoChina
| | - Chuanen Zhou
- School of Life ScienceShandong UniversityQingdaoChina
| | - Liang Sun
- Noble Research InstituteArdmoreOKUSA
| | | | | | - Jaydeep Kolape
- Noble Research InstituteArdmoreOKUSA
- Morrison Microscopy Core Research FacilityCenter for BiotechnologyUniversity of Nebraska‐LincolnNEUSA
| | - Zhaozhu Wen
- Noble Research InstituteArdmoreOKUSA
- College of AgricultureHunan Agricultural UniversityHunanChina
| | - Marjan Behzadirad
- Institute for Agricultural BiosciencesOklahoma State UniversityArdmoreOKUSA
| | - Tianxiu Zhong
- College of Forestry and Landscape ArchitectureSouth China Agricultural UniversityGuangzhouChina
| | - Juan Sun
- Grassland Agri‐Husbandry Research CenterCollege of Grassland ScienceQingdao Agricultural UniversityQingdaoChina
| | - Yunwei Zhang
- College of Grassland Science and TechnologyChina Agricultural UniversityBeijingChina
| | - Zeng‐Yu Wang
- Noble Research InstituteArdmoreOKUSA
- Grassland Agri‐Husbandry Research CenterCollege of Grassland ScienceQingdao Agricultural UniversityQingdaoChina
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9
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Singh P, Bharti N, Singh AP, Tripathi SK, Pandey SP, Chauhan AS, Kulkarni A, Sane AP. Petal abscission in fragrant roses is associated with large scale differential regulation of the abscission zone transcriptome. Sci Rep 2020; 10:17196. [PMID: 33057097 PMCID: PMC7566604 DOI: 10.1038/s41598-020-74144-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 09/08/2020] [Indexed: 12/03/2022] Open
Abstract
Flowers of fragrant roses such as Rosa bourboniana are ethylene-sensitive and undergo rapid petal abscission while hybrid roses show reduced ethylene sensitivity and delayed abscission. To understand the molecular mechanism underlying these differences, a comparative transcriptome of petal abscission zones (AZ) of 0 h and 8 h ethylene-treated flowers from R. bourboniana was performed. Differential regulation of 3700 genes (1518 up, 2182 down) representing 8.5% of the AZ transcriptome was observed between 0 and 8 h ethylene-treated R. bourboniana petal AZ. Abscission was associated with large scale up-regulation of the ethylene pathway but prominent suppression of the JA, auxin and light-regulated pathways. Regulatory genes encoding kinases/phosphatases/F-box proteins and transcription factors formed the major group undergoing differential regulation besides genes for transporters, wall modification, defense and phenylpropanoid pathways. Further comparisons with ethylene-treated petals of R. bourboniana and 8 h ethylene-treated AZ (R. hybrida) identified a core set of 255 genes uniquely regulated by ethylene in R. bourboniana AZ. Almost 23% of these encoded regulatory proteins largely conserved with Arabidopsis AZ components. Most of these were up-regulated while an entire set of photosystem genes was prominently down-regulated. The studies provide important information on regulation of petal abscission in roses.
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Affiliation(s)
- Priya Singh
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India. .,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
| | - Neeraj Bharti
- Bioinformatics Centre, Savitribai Phule Pune University, Pune, 411007, India.,High Performance Computing-Medical and Bioinformatics Applications Group, Centre for Development of Advanced Computing, Pune, 411008, India
| | - Amar Pal Singh
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.,National Institute for Plant Genome Research, New Delhi, 110067, India
| | - Siddharth Kaushal Tripathi
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.,National Centre for Natural Products Research, School of Pharmacy, University of Mississippi, Oxford, MS, 38677, USA
| | - Saurabh Prakash Pandey
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Abhishek Singh Chauhan
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Abhijeet Kulkarni
- Bioinformatics Centre, Savitribai Phule Pune University, Pune, 411007, India
| | - Aniruddha P Sane
- Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India. .,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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10
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Ventimilla D, Domingo C, González-Ibeas D, Talon M, Tadeo FR. Differential expression of IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)-like genes in Nicotiana benthamiana during corolla abscission, stem growth and water stress. BMC PLANT BIOLOGY 2020; 20:34. [PMID: 31959115 PMCID: PMC6971993 DOI: 10.1186/s12870-020-2250-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 01/14/2020] [Indexed: 05/06/2023]
Abstract
BACKGROUND IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)-like signaling peptides and the associated HAE (HAESA)-like family of receptor kinases were originally reported in the model plant Arabidopsis thaliana (Arabidopsis) to be deeply involved in the regulation of abscission. Actually, IDA peptides, as cell-to-cell communication elements, appear to be implicated in many developmental processes that rely on cell separation events, and even in the responses to abiotic stresses. However, the knowledge related to the molecular machinery regulating abscission in economically important crops is scarce. In this work, we determined the conservation and phylogeny of the IDA-like and HAE-like gene families in relevant species of the Solanaceae family and analyzed the expression of these genes in the allopolyploid Nicotiana benthamiana, in order to identify members involved in abscission, stem growth and in the response to drought conditions. RESULTS The phylogenetic relationships among the IDA-like members of the Solanaceae studied, grouped the two pairs of NbenIDA1 and NbenIDA2 protein homeologs with the Arabidopsis prepropeptides related to abscission. Analysis of promoter regions searching for regulatory elements showed that these two pairs of homeologs contained both hormonal and drought response elements, although NbenIDA2A lacked the hormonal regulatory elements. Expression analyses showed that the pair of NbenIDA1 homeologs were upregulated during corolla abscission. NbenIDA1 and NbenIDA2 pairs showed tissue differential expression under water stress conditions, since NbenIDA1 homeologs were highly expressed in stressed leaves while NbenIDA2 homeologs, especially NbenIDA2B, were highly expressed in stressed roots. In non-stressed active growing plants, nodes and internodes were the tissues with the highest expression levels of all members of the IDA-like family and their putative HAE-like receptors. CONCLUSION Our results suggest that the pair of NbenIDA1 homeologs are involved in the natural process of corolla abscission while both pairs of NbenIDA1 and NbenIDA2 homeologs are implicated in the response to water stress. The data also suggest that IDA peptides may be important during stem growth and development. These results provide additional evidence that the functional module formed by IDA peptides and its receptor kinases, as defined in Arabidopsis, may also be conserved in Solanaceae.
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Affiliation(s)
- Daniel Ventimilla
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113 Valencia, Spain
| | - Concha Domingo
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113 Valencia, Spain
| | - Daniel González-Ibeas
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113 Valencia, Spain
| | - Manuel Talon
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113 Valencia, Spain
| | - Francisco R. Tadeo
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113 Valencia, Spain
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11
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Ventimilla D, Domingo C, González-Ibeas D, Talon M, Tadeo FR. Differential expression of IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)-like genes in Nicotiana benthamiana during corolla abscission, stem growth and water stress. BMC PLANT BIOLOGY 2020; 20:34. [PMID: 31959115 DOI: 10.1186/s12870-020-2250-2258] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 01/14/2020] [Indexed: 05/27/2023]
Abstract
BACKGROUND IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)-like signaling peptides and the associated HAE (HAESA)-like family of receptor kinases were originally reported in the model plant Arabidopsis thaliana (Arabidopsis) to be deeply involved in the regulation of abscission. Actually, IDA peptides, as cell-to-cell communication elements, appear to be implicated in many developmental processes that rely on cell separation events, and even in the responses to abiotic stresses. However, the knowledge related to the molecular machinery regulating abscission in economically important crops is scarce. In this work, we determined the conservation and phylogeny of the IDA-like and HAE-like gene families in relevant species of the Solanaceae family and analyzed the expression of these genes in the allopolyploid Nicotiana benthamiana, in order to identify members involved in abscission, stem growth and in the response to drought conditions. RESULTS The phylogenetic relationships among the IDA-like members of the Solanaceae studied, grouped the two pairs of NbenIDA1 and NbenIDA2 protein homeologs with the Arabidopsis prepropeptides related to abscission. Analysis of promoter regions searching for regulatory elements showed that these two pairs of homeologs contained both hormonal and drought response elements, although NbenIDA2A lacked the hormonal regulatory elements. Expression analyses showed that the pair of NbenIDA1 homeologs were upregulated during corolla abscission. NbenIDA1 and NbenIDA2 pairs showed tissue differential expression under water stress conditions, since NbenIDA1 homeologs were highly expressed in stressed leaves while NbenIDA2 homeologs, especially NbenIDA2B, were highly expressed in stressed roots. In non-stressed active growing plants, nodes and internodes were the tissues with the highest expression levels of all members of the IDA-like family and their putative HAE-like receptors. CONCLUSION Our results suggest that the pair of NbenIDA1 homeologs are involved in the natural process of corolla abscission while both pairs of NbenIDA1 and NbenIDA2 homeologs are implicated in the response to water stress. The data also suggest that IDA peptides may be important during stem growth and development. These results provide additional evidence that the functional module formed by IDA peptides and its receptor kinases, as defined in Arabidopsis, may also be conserved in Solanaceae.
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Affiliation(s)
- Daniel Ventimilla
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113, Valencia, Spain
| | - Concha Domingo
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113, Valencia, Spain
| | - Daniel González-Ibeas
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113, Valencia, Spain
| | - Manuel Talon
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113, Valencia, Spain
| | - Francisco R Tadeo
- Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias (IVIA), CV-315, Km 10,7 Moncada, E-46113, Valencia, Spain.
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12
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Li C, Zhao M, Ma X, Wen Z, Ying P, Peng M, Ning X, Xia R, Wu H, Li J. The HD-Zip transcription factor LcHB2 regulates litchi fruit abscission through the activation of two cellulase genes. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:5189-5203. [PMID: 31173099 PMCID: PMC6793447 DOI: 10.1093/jxb/erz276] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 05/30/2019] [Indexed: 05/05/2023]
Abstract
Cellulases play important roles in the shedding of plant organs; however, little is yet known about the functions of cellulase genes during the process of organ abscission. Abnormal fruitlet abscission is a serious problem in the production of litchi (Litchi chinensis), an economically important fruit widely grown in South Asia. In this study, two abscission-accelerating treatments (carbohydrate stress and application of ethephon) were evaluated in litchi fruitlets. Cell wall degradation and cell separation were clearly observed in the abscission zones of treated fruitlets, consistent with enhanced cellulase activities and reduced cellulose contents. The expression of two cellulase genes (LcCEL2 and LcCEL8) was strongly associated with abscission. Floral organs of transgenic Arabidopsis overexpressing LcCEL2 or LcCEL8 showed remarkably precocious abscission. Electrophoretic mobility shift assays and transient expression experiments demonstrated that a novel homeodomain-leucine zipper transcription factor, LcHB2, could directly bind to and activate HD-binding cis-elements in the LcCEL2 and LcCEL8 promoters. Our results provide new information regarding the transcriptional regulation of the cellulase genes responsible for cell wall degradation and cell separation during plant organ shedding, and raise the possibility of future manipulation of litchi fruitlet abscission by modulation of the activities of these two cellulases.
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Affiliation(s)
- Caiqin Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
- Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Minglei Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Xingshuai Ma
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Zhenxi Wen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Peiyuan Ying
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Manjun Peng
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Xiping Ning
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
| | - Rui Xia
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Hong Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Correspondence: or
| | - Jianguo Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
- Correspondence: or
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13
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Wang J, Hossain MS, Lyu Z, Schmutz J, Stacey G, Xu D, Joshi T. SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data. PLANT DIRECT 2019; 3:e00167. [PMID: 31549018 PMCID: PMC6747016 DOI: 10.1002/pld3.167] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 08/12/2019] [Accepted: 08/20/2019] [Indexed: 05/04/2023]
Abstract
The Soybean Gene Atlas project provides a comprehensive map for understanding gene expression patterns in major soybean tissues from flower, root, leaf, nodule, seed, and shoot and stem. The RNA-Seq data generated in the project serve as a valuable resource for discovering tissue-specific transcriptome behavior of soybean genes in different tissues. We developed a computational pipeline for Soybean context-specific network (SoyCSN) inference with a suite of prediction tools to analyze, annotate, retrieve, and visualize soybean context-specific networks at both transcriptome and interactome levels. BicMix and Cross-Conditions Cluster Detection algorithms were applied to detect modules based on co-expression relationships across all the tissues. Soybean context-specific interactomes were predicted by combining soybean tissue gene expression and protein-protein interaction data. Functional analyses of these predicted networks provide insights into soybean tissue specificities. For example, under symbiotic, nitrogen-fixing conditions, the constructed soybean leaf network highlights the connection between the photosynthesis function and rhizobium-legume symbiosis. SoyCSN data and all its results are publicly available via an interactive web service within the Soybean Knowledge Base (SoyKB) at http://soykb.org/SoyCSN. SoyCSN provides a useful web-based access for exploring context specificities systematically in gene regulatory mechanisms and gene relationships for soybean researchers and molecular breeders.
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Affiliation(s)
- Juexin Wang
- Department of Electrical Engineering and Computer ScienceUniversity of MissouriSt. LouisMOUSA
- Christopher S. Bond Life Sciences CenterUniversity of MissouriSt. LouisMOUSA
| | - Md Shakhawat Hossain
- Christopher S. Bond Life Sciences CenterUniversity of MissouriSt. LouisMOUSA
- Divisions of Plant Science and BiochemistryUniversity of MissouriSt. LouisMOUSA
| | - Zhen Lyu
- Department of Electrical Engineering and Computer ScienceUniversity of MissouriSt. LouisMOUSA
| | - Jeremy Schmutz
- HudsonAlpha Institute for BiotechnologyHuntsvilleALUSA
- DOE Joint Genome InstituteWalnut CreekCAUSA
| | - Gary Stacey
- Christopher S. Bond Life Sciences CenterUniversity of MissouriSt. LouisMOUSA
- Divisions of Plant Science and BiochemistryUniversity of MissouriSt. LouisMOUSA
| | - Dong Xu
- Department of Electrical Engineering and Computer ScienceUniversity of MissouriSt. LouisMOUSA
- Christopher S. Bond Life Sciences CenterUniversity of MissouriSt. LouisMOUSA
- Informatics InstituteUniversity of MissouriSt. LouisMOUSA
| | - Trupti Joshi
- Christopher S. Bond Life Sciences CenterUniversity of MissouriSt. LouisMOUSA
- Informatics InstituteUniversity of MissouriSt. LouisMOUSA
- Department of Health Management and Informatics and Office of ResearchSchool of MedicineUniversity of MissouriSt. LouisMOUSA
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14
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Kućko A, Smoliński D, Wilmowicz E, Florkiewicz A, de Dios Alché J. Spatio-temporal localization of LlBOP following early events of floral abscission in yellow lupine. PROTOPLASMA 2019; 256:1173-1183. [PMID: 30993471 PMCID: PMC6713700 DOI: 10.1007/s00709-019-01365-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Accepted: 03/11/2019] [Indexed: 05/06/2023]
Abstract
The phenomenon of excessive flower abscission in yellow lupine is a process of substantial interest to the agricultural industries, because it substantially affects the yield. The aim of this work was to provide an analysis of the changes taking place precisely in the abscission zone (AZ) during early stages of flower separation. We put particular emphasis on mRNA accumulation of BOP (BLADE ON PETIOLE) gene encoding a transcriptional factor so far considered to be essential for AZ formation. Our results show that the AZ displays a particular transcriptional network active in the specific stages of its function, as reflected by the expression profile of LlBOP. Noteworthy, spatio-temporal LlBOP transcript accumulation in the elements of pedicel vascular tissue reveals divergent regulatory mechanism of its activity. We have also found that AZ cells accumulate reactive oxidative species following abscission and what is more, become active due to the increasing amount of uridine-rich small nuclear RNA, accompanied by poly(A) mRNA intensive synthesis. Our paper is a novel report for BOP involvement in the AZ functioning in relation to the whole transcriptional activity of AZ and overall discussed regarding BOP role as a potential mobile key regulator of abscission.
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Affiliation(s)
- Agata Kućko
- Chair of Plant Physiology and Biotechnology, Nicolaus Copernicus University, 1 Lwowska Street, 87-100, Toruń, Poland
- Department of Plant Physiology, Warsaw University of Life Sciences-SGGW (WULS-SGGW), Nowoursynowska 166 Street, 02-787, Warsaw, Poland
| | - Dariusz Smoliński
- Department of Cell Biology, Nicolaus Copernicus University, 1 Lwowska Street, 87-100, Toruń, Poland
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, 4 Wileńska Street, 87-100, Toruń, Poland
| | - Emilia Wilmowicz
- Chair of Plant Physiology and Biotechnology, Nicolaus Copernicus University, 1 Lwowska Street, 87-100, Toruń, Poland.
| | - Aleksandra Florkiewicz
- Chair of Plant Physiology and Biotechnology, Nicolaus Copernicus University, 1 Lwowska Street, 87-100, Toruń, Poland
| | - Juan de Dios Alché
- Department of Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín, CSIC, 1 Profesor Albareda Street, 18008, Granada, Spain
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15
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Li C, Ma X, Huang X, Wang H, Wu H, Zhao M, Li J. Involvement of HD-ZIP I transcription factors LcHB2 and LcHB3 in fruitlet abscission by promoting transcription of genes related to the biosynthesis of ethylene and ABA in litchi. TREE PHYSIOLOGY 2019; 39:1600-1613. [PMID: 31222320 DOI: 10.1093/treephys/tpz071] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 05/07/2019] [Accepted: 06/11/2019] [Indexed: 05/28/2023]
Abstract
Abnormal fruitlet abscission is a limiting factor in the production of litchi, an economically important fruit in Southern Asia. Both ethylene and abscisic acid (ABA) induce organ abscission in plants. Although ACS/ACO and NCED genes are known to encode key enzymes required for ethylene and ABA biosynthesis, respectively, the transcriptional regulation of these genes is unclear in the process of plant organ shedding. Here, two polygalacturonase (PG) genes (LcPG1 and LcPG2) and two novel homeodomain-leucine zipper I transcription factors genes (LcHB2 and LcHB3) were identified as key genes associated with the fruitlet abscission in litchi. The expression of LcPG1 and LcPG2 was strongly associated with litchi fruitlet abscission, consistent with enhanced PG activity and reduced homogalacturonan content in fruitlet abscission zones (FAZs). The promoter activities of LcPG1/2 were enhanced by ethephon and ABA. In addition, the production of ethylene and ABA in fruitlets was significantly increased during fruit abscission. Consistently, expression of five genes (LcACO2, LcACO3, LcACS1, LcACS4 and LcACS7) related to ethylene biosynthesis and one gene (LcNCED3) related to ABA biosynthesis in FAZs were activated. Further, electrophoretic mobility shift assays and transient expression experiments demonstrated that both LcHB2 and LcHB3 could directly bind to the promoter of LcACO2/3, LcACS1/4/7 and LcNCED3 genes and activate their expression. Collectively, we propose that LcHB2/3 are involved in the litchi fruitlet abscission through positive regulation of ethylene and ABA biosynthesis.
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Affiliation(s)
- Caiqin Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Xingshuai Ma
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Xuming Huang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Huicong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Hong Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
| | - Minglei Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Jianguo Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
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16
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Shi CL, Alling RM, Hammerstad M, Aalen RB. Control of Organ Abscission and Other Cell Separation Processes by Evolutionary Conserved Peptide Signaling. PLANTS 2019; 8:plants8070225. [PMID: 31311120 PMCID: PMC6681299 DOI: 10.3390/plants8070225] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 07/06/2019] [Accepted: 07/10/2019] [Indexed: 01/10/2023]
Abstract
Plants both generate and shed organs throughout their lifetime. Cell separation is in function during opening of anthers to release pollen; floral organs are detached after pollination when they have served their purpose; unfertilized flowers are shed; fruits and seeds are abscised from the mother plant to secure the propagation of new generations. Organ abscission takes place in specialized abscission zone (AZ) cells where the middle lamella between adjacent cell files is broken down. The plant hormone ethylene has a well-documented promoting effect on abscission, but mutation in ethylene receptor genes in Arabidopsis thaliana only delays the abscission process. Microarray and RNA sequencing have identified a large number of genes differentially expressed in the AZs, especially genes encoding enzymes involved in cell wall remodelling and disassembly. Mutations in such genes rarely give a phenotype, most likely due to functional redundancy. In contrast, mutation in the INFLORESCENCE DEFICIENT IN ABSCISSION (IDA) blocks floral organ abscission in Arabidopsis. IDA encodes a small peptide that signals through the leucine-rich repeat receptor-like kinases HAESA (HAE) and HAE-LIKE2 (HSL2) to control floral organ abscission and facilitate lateral root emergence. Untimely abscission is a severe problem in many crops, and in a more applied perspective, it is of interest to investigate whether IDA-HAE/HSL2 is involved in other cell separation processes and other species. Genes encoding IDA and HSL2 orthologues have been identified in all orders of flowering plants. Angiosperms have had enormous success, with species adapted to all kinds of environments, adaptations which include variation with respect to which organs they shed. Here we review, from an evolutionary perspective, the properties of the IDA-HAE/HSL2 signaling module and the evidence for its hypothesized involvement in various cell separation processes in angiosperms.
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Affiliation(s)
- Chun-Lin Shi
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway
| | - Renate Marie Alling
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway
| | - Marta Hammerstad
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway
| | - Reidunn B Aalen
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway.
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17
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Kim J, Chun JP, Tucker ML. Transcriptional Regulation of Abscission Zones. PLANTS 2019; 8:plants8060154. [PMID: 31174352 PMCID: PMC6631628 DOI: 10.3390/plants8060154] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 05/29/2019] [Accepted: 06/04/2019] [Indexed: 12/17/2022]
Abstract
Precise and timely regulation of organ separation from the parent plant (abscission) is consequential to improvement of crop productivity as it influences both the timing of harvest and fruit quality. Abscission is tightly associated with plant fitness as unwanted organs (petals, sepals, filaments) are shed after fertilization while seeds, fruits, and leaves are cast off as means of reproductive success or in response to abiotic/biotic stresses. Floral organ abscission in Arabidopsis has been a useful model to elucidate the molecular mechanisms that underlie the separation processes, and multiple abscission signals associated with the activation and downstream pathways have been uncovered. Concomitantly, large-scale analyses of omics studies in diverse abscission systems of various plants have added valuable insights into the abscission process. The results suggest that there are common molecular events linked to the biosynthesis of a new extracellular matrix as well as cell wall disassembly. Comparative analysis between Arabidopsis and soybean abscission systems has revealed shared and yet disparate regulatory modules that affect the separation processes. In this review, we discuss our current understanding of the transcriptional regulation of abscission in several different plants that has improved on the previously proposed four-phased model of organ separation.
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Affiliation(s)
- Joonyup Kim
- Department of Horticultural Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea.
| | - Jong-Pil Chun
- Department of Horticultural Science, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 34134, Korea.
| | - Mark L Tucker
- Soybean Genomics and Improvement Laboratory, Agricultural Research Service, USDA Bldg. 006, 10300 Baltimore Ave., Beltsville, MD 20705, USA.
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18
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Shchennikova AV, Slugina MA, Beletsky AV, Filyushin MA, Mardanov AA, Shulga OA, Kochieva EZ, Ravin NV, Skryabin KG. The YABBY Genes of Leaf and Leaf-Like Organ Polarity in Leafless Plant Monotropa hypopitys. Int J Genomics 2018; 2018:7203469. [PMID: 29850475 PMCID: PMC5941816 DOI: 10.1155/2018/7203469] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 03/02/2018] [Accepted: 03/18/2018] [Indexed: 11/18/2022] Open
Abstract
Monotropa hypopitys is a mycoheterotrophic, nonphotosynthetic plant acquiring nutrients from the roots of autotrophic trees through mycorrhizal symbiosis, and, similar to other extant plants, forming asymmetrical lateral organs during development. The members of the YABBY family of transcription factors are important players in the establishment of leaf and leaf-like organ polarity in plants. This is the first report on the identification of YABBY genes in a mycoheterotrophic plant devoid of aboveground vegetative organs. Seven M. hypopitys YABBY members were identified and classified into four clades. By structural analysis of putative encoded proteins, we confirmed the presence of YABBY-defining conserved domains and identified novel clade-specific motifs. Transcriptomic and qRT-PCR analyses of different tissues revealed MhyYABBY transcriptional patterns, which were similar to those of orthologous YABBY genes from other angiosperms. These data should contribute to the understanding of the role of the YABBY genes in the regulation of developmental and physiological processes in achlorophyllous leafless plants.
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Affiliation(s)
- Anna V. Shchennikova
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
| | - Marya A. Slugina
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
- Lomonosov Moscow State University, Moscow 119991, Russia
| | - Alexey V. Beletsky
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
| | - Mikhail A. Filyushin
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
| | - Andrey A. Mardanov
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
| | - Olga A. Shulga
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
| | - Elena Z. Kochieva
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
- Lomonosov Moscow State University, Moscow 119991, Russia
| | - Nikolay V. Ravin
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
| | - Konstantin G. Skryabin
- Federal State Institution “Federal Research Centre “Fundamentals of Biotechnology” of the Russian Academy of Sciences”, Moscow 119071, Russia
- Lomonosov Moscow State University, Moscow 119991, Russia
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19
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Sundaresan S, Philosoph-Hadas S, Ma C, Jiang CZ, Riov J, Mugasimangalam R, Kochanek B, Salim S, Reid MS, Meir S. The Tomato Hybrid Proline-rich Protein regulates the abscission zone competence to respond to ethylene signals. HORTICULTURE RESEARCH 2018; 5:28. [PMID: 29872533 PMCID: PMC5981600 DOI: 10.1038/s41438-018-0033-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 03/05/2018] [Accepted: 03/08/2018] [Indexed: 05/04/2023]
Abstract
The Tomato Hybrid Proline-rich Protein (THyPRP) gene was specifically expressed in the tomato (Solanum lycopersicum) flower abscission zone (FAZ), and its stable antisense silencing under the control of an abscission zone (AZ)-specific promoter, Tomato Abscission Polygalacturonase4, significantly inhibited tomato pedicel abscission following flower removal. For understanding the THyPRP role in regulating pedicel abscission, a transcriptomic analysis of the FAZ of THyPRP-silenced plants was performed, using a newly developed AZ-specific tomato microarray chip. Decreased expression of THyPRP in the silenced plants was already observed before abscission induction, resulting in FAZ-specific altered gene expression of transcription factors, epigenetic modifiers, post-translational regulators, and transporters. Our data demonstrate that the effect of THyPRP silencing on pedicel abscission was not mediated by its effect on auxin balance, but by decreased ethylene biosynthesis and response. Additionally, THyPRP silencing revealed new players, which were demonstrated for the first time to be involved in regulating pedicel abscission processes. These include: gibberellin perception, Ca2+-Calmodulin signaling, Serpins and Small Ubiquitin-related Modifier proteins involved in post-translational modifications, Synthaxin and SNARE-like proteins, which participate in exocytosis, a process necessary for cell separation. These changes, occurring in the silenced plants early after flower removal, inhibited and/or delayed the acquisition of the competence of the FAZ cells to respond to ethylene signaling. Our results suggest that THyPRP acts as a master regulator of flower abscission in tomato, predominantly by playing a role in the regulation of the FAZ cell competence to respond to ethylene signals.
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Affiliation(s)
- Srivignesh Sundaresan
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization (ARO), The Volcani Center, Rishon LeZiyon, Israel
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
- Present Address: Department of Nano Science and Technology, Tamil Nadu Agricultural University, Coimbatore, India
| | - Sonia Philosoph-Hadas
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization (ARO), The Volcani Center, Rishon LeZiyon, Israel
| | - Chao Ma
- Department of Plant Sciences, University of California, Davis, CA USA
- Present Address: Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
| | - Cai-Zhong Jiang
- Department of Plant Sciences, University of California, Davis, CA USA
- Crops Pathology & Genetic Research Unit, USDA-ARS, Davis, CA USA
| | - Joseph Riov
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Raja Mugasimangalam
- Department of Bioinformatics, QTLomics Technologies Pvt. Ltd, Bangalore, India
| | - Betina Kochanek
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization (ARO), The Volcani Center, Rishon LeZiyon, Israel
| | - Shoshana Salim
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization (ARO), The Volcani Center, Rishon LeZiyon, Israel
| | - Michael S. Reid
- Department of Plant Sciences, University of California, Davis, CA USA
| | - Shimon Meir
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization (ARO), The Volcani Center, Rishon LeZiyon, Israel
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Glazinska P, Wojciechowski W, Kulasek M, Glinkowski W, Marciniak K, Klajn N, Kesy J, Kopcewicz J. De novo Transcriptome Profiling of Flowers, Flower Pedicels and Pods of Lupinus luteus (Yellow Lupine) Reveals Complex Expression Changes during Organ Abscission. FRONTIERS IN PLANT SCIENCE 2017; 8:641. [PMID: 28512462 PMCID: PMC5412092 DOI: 10.3389/fpls.2017.00641] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2016] [Accepted: 04/10/2017] [Indexed: 05/03/2023]
Abstract
Yellow lupine (Lupinus luteus L., Taper c.), a member of the legume family (Fabaceae L.), has an enormous practical importance. Its excessive flower and pod abscission represents an economic drawback, as proper flower and seed formation and development is crucial for the plant's productivity. Generative organ detachment takes place at the basis of the pedicels, within a specialized group of cells collectively known as the abscission zone (AZ). During plant growth these cells become competent to respond to specific signals that trigger separation and lead to the abolition of cell wall adhesion. Little is known about the molecular network controlling the yellow lupine organ abscission. The aim of our study was to establish the divergences and similarities in transcriptional networks in the pods, flowers and flower pedicels abscised or maintained on the plant, and to identify genes playing key roles in generative organ abscission in yellow lupine. Based on de novo transcriptome assembly, we identified 166,473 unigenes representing 219,514 assembled unique transcripts from flowers, flower pedicels and pods undergoing abscission and from control organs. Comparison of the cDNA libraries from dropped and control organs helped in identifying 1,343, 2,933 and 1,491 differentially expressed genes (DEGs) in the flowers, flower pedicels and pods, respectively. In DEG analyses, we focused on genes involved in phytohormonal regulation, cell wall functioning and metabolic pathways. Our results indicate that auxin, ethylene and gibberellins are some of the main factors engaged in generative organ abscission. Identified 28 DEGs common for all library comparisons are involved in cell wall functioning, protein metabolism, water homeostasis and stress response. Interestingly, among the common DEGs we also found an miR169 precursor, which is the first evidence of micro RNA engaged in abscission. A KEGG pathway enrichment analysis revealed that the identified DEGs were predominantly involved in carbohydrate and amino acid metabolism, but some other pathways were also targeted. This study represents the first comprehensive transcriptome-based characterization of organ abscission in L. luteus and provides a valuable data source not only for understanding the abscission signaling pathway in yellow lupine, but also for further research aimed at improving crop yields.
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Affiliation(s)
- Paulina Glazinska
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus UniversityTorun, Poland
| | - Waldemar Wojciechowski
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus UniversityTorun, Poland
| | - Milena Kulasek
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
| | - Wojciech Glinkowski
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
| | - Katarzyna Marciniak
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus UniversityTorun, Poland
| | - Natalia Klajn
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
| | - Jacek Kesy
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
| | - Jan Kopcewicz
- Department of Biology and Environmental Science, Nicolaus Copernicus UniversityTorun, Poland
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21
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Iqbal N, Khan NA, Ferrante A, Trivellini A, Francini A, Khan MIR. Ethylene Role in Plant Growth, Development and Senescence: Interaction with Other Phytohormones. FRONTIERS IN PLANT SCIENCE 2017; 8:475. [PMID: 28421102 PMCID: PMC5378820 DOI: 10.3389/fpls.2017.00475] [Citation(s) in RCA: 298] [Impact Index Per Article: 42.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Accepted: 03/17/2017] [Indexed: 05/18/2023]
Abstract
The complex juvenile/maturity transition during a plant's life cycle includes growth, reproduction, and senescence of its fundamental organs: leaves, flowers, and fruits. Growth and senescence of leaves, flowers, and fruits involve several genetic networks where the phytohormone ethylene plays a key role, together with other hormones, integrating different signals and allowing the onset of conditions favorable for stage progression, reproductive success and organ longevity. Changes in ethylene level, its perception, and the hormonal crosstalk directly or indirectly regulate the lifespan of plants. The present review focused on ethylene's role in the development and senescence processes in leaves, flowers and fruits, paying special attention to the complex networks of ethylene crosstalk with other hormones. Moreover, aspects with limited information have been highlighted for future research, extending our understanding on the importance of ethylene during growth and senescence and boosting future research with the aim to improve the qualitative and quantitative traits of crops.
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Affiliation(s)
| | - Nafees A. Khan
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim UniversityAligarh, India
| | - Antonio Ferrante
- Department of Agricultural and Environmental Sciences, Università degli Studi di MilanoMilano, Italy
| | - Alice Trivellini
- Institute of Life Sciences, Scuola Superiore Sant’AnnaPisa, Italy
| | | | - M. I. R. Khan
- Crop and Environmental Sciences Division, International Rice Research InstituteManila, Philippines
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22
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Chersicola M, Kladnik A, Tušek Žnidarič M, Mrak T, Gruden K, Dermastia M. 1-Aminocyclopropane-1-Carboxylate Oxidase Induction in Tomato Flower Pedicel Phloem and Abscission Related Processes Are Differentially Sensitive to Ethylene. FRONTIERS IN PLANT SCIENCE 2017; 8:464. [PMID: 28408916 PMCID: PMC5374216 DOI: 10.3389/fpls.2017.00464] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Accepted: 03/16/2017] [Indexed: 06/07/2023]
Abstract
Ethylene has impact on several physiological plant processes, including abscission, during which plants shed both their vegetative and reproductive organs. Cell separation and programmed cell death are involved in abscission, and these have also been correlated with ethylene action. However, the detailed spatiotemporal pattern of the molecular events during abscission remains unknown. We examined the expression of two tomato ACO genes, LeACO1, and LeACO4 that encode the last enzyme in ethylene biosynthesis, 1-aminocyclopropane-1-carboxylate oxidase (ACO), together with the expression of other abscission-associated genes involved in cell separation and programmed cell death, during a period of 0-12 h after abscission induction in the tomato flower pedicel abscission zone and nearby tissues. In addition, we determined their localization in specific cell layers of the flower pedicel abscission zone and nearby tissues obtained by laser microdissection before and 8 h after abscission induction. The expression of both ACO genes was localized to the vascular tissues in the pedicel. While LeACO4 was more uniformly expressed in all examined cell layers, the main expression site of LeACO1 was in cell layers just outside the abscission zone in its proximal and distal part. We showed that after abscission induction, ACO1 protein was synthesized in phloem companion cells, in which it was localized mainly in the cytoplasm. Samples were additionally treated with 1-methylcyclopropene (1-MCP), a competitive inhibitor of ethylene actions, and analyzed 8 h after abscission induction. Cell-layer-specific changes in gene expression were observed together with the specific localization and ethylene sensitivity of the hallmarks of cell separation and programmed cell death. While treatment with 1-MCP prevented separation of cells through inhibition of the expression of polygalacturonases, which are the key enzymes involved in degradation of the middle lamella, this had less impact on the occurrence of different kinds of membrane vesicles and abscission-related programmed cell death. In the flower pedicel abscission zone, the physical progressions of cell separation and programmed cell death are perpendicular to each other and start in the vascular tissues.
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Affiliation(s)
- Marko Chersicola
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
- Jožef Stefan International Postgraduate SchoolLjubljana, Slovenia
| | - Aleš Kladnik
- Department of Biology, Biotechnical Faculty, University of LjubljanaLjubljana, Slovenia
| | - Magda Tušek Žnidarič
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
| | - Tanja Mrak
- Department of Forest Physiology and Genetics, Slovenian Forestry InstituteLjubljana, Slovenia
| | - Kristina Gruden
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
- Jožef Stefan International Postgraduate SchoolLjubljana, Slovenia
| | - Marina Dermastia
- Department of Biotechnology and Systems Biology, National Institute of BiologyLjubljana, Slovenia
- Jožef Stefan International Postgraduate SchoolLjubljana, Slovenia
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23
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Groner WD, Christy ME, Kreiner CM, Liljegren SJ. Allele-Specific Interactions between CAST AWAY and NEVERSHED Control Abscission in Arabidopsis Flowers. FRONTIERS IN PLANT SCIENCE 2016; 7:1588. [PMID: 27818674 PMCID: PMC5073242 DOI: 10.3389/fpls.2016.01588] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Accepted: 10/07/2016] [Indexed: 05/20/2023]
Abstract
An advantage of analyzing abscission in genetically tractable model plants is the ability to make use of classic genetic tools such as suppression analysis. We have investigated the regulation of organ abscission by carrying out suppression analysis in Arabidopsis flowers. Plants carrying mutations in the NEVERSHED (NEV) gene, which encodes an ADP-ribosylation factor GTPase-activating protein, retain their outer floral organs after fertilization. Mutant alleles of CAST AWAY (CST), which encodes a receptor-like cytoplasmic kinase, were found to restore organ abscission in nev flowers in an allele-specific manner. To further explore the basis of the interactions between CST and NEV, we tested whether the site of a nev mutation is predictive of its ability to be suppressed. Our results suggest instead that the strength of a nev allele influences whether organ abscission can be rescued by a specific allele of CST.
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Gao Y, Liu C, Li X, Xu H, Liang Y, Ma N, Fei Z, Gao J, Jiang CZ, Ma C. Transcriptome Profiling of Petal Abscission Zone and Functional Analysis of an Aux/IAA Family Gene RhIAA16 Involved in Petal Shedding in Rose. FRONTIERS IN PLANT SCIENCE 2016; 7:1375. [PMID: 27695465 PMCID: PMC5023668 DOI: 10.3389/fpls.2016.01375] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 08/29/2016] [Indexed: 05/18/2023]
Abstract
Roses are one of the most important cut flowers among ornamental plants. Rose flower longevity is largely dependent on the timing of petal shedding occurrence. To understand the molecular mechanism underlying petal abscission in rose, we performed transcriptome profiling of the petal abscission zone during petal shedding using Illumina technology. We identified a total of 2592 differentially transcribed genes (DTGs) during rose petal shedding. Gene ontology term enrichment and pathway analysis revealed that major biochemical pathways the DTGs were involved in included ethylene biosynthesis, starch degradation, superpathway of cytosolic glycolysis, pyruvate dehydrogenase and TCA cycle, photorespiration and the lactose degradation III pathway. This suggests that alterations in carbon metabolism are an important part of rose petal abscission. Among these DTGs, approximately 150 genes putatively encoding transcription factors were identified in rose abscission zone. These included zinc finger, WRKY, ERF, and Aux/IAA gene families, suggesting that petal abscission involves complex transcriptional reprogramming. Approximately 108 DTGs were related to hormone pathways, of which auxin and ethylene related DTGs were the largest groups including 52 and 41 genes, respectively. These also included 12 DTGs related to gibberellin and 6 DTGs in jasmonic acid pathway. Surprisingly, no DTGs involved in the biosynthesis/signaling of abscisic acid, cytokinin, brassinosteroid, and salicylic acid pathways were detected. Moreover, among DTGs related to auxin, we identified an Aux/IAA gene RhIAA16 that was up-regulated in response to petal shedding. Down-regulation of RhIAA16 by virus-induced gene silencing in rose promoted petal abscission, suggesting that RhIAA16 plays an important role in rose petal abscission.
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Affiliation(s)
- Yuerong Gao
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Chun Liu
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Xiaodong Li
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Haiqian Xu
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Yue Liang
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Nan Ma
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Zhangjun Fei
- Robert W. Holley Center for Agriculture and Health, United States Department of Agriculture–Agricultural Research ServiceIthaca, NY, USA
- Boyce Thompson InstituteIthaca, NY, USA
| | - Junping Gao
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
| | - Cai-Zhong Jiang
- Crops Pathology and Genetic Research Unit, United States Department of Agriculture, Agricultural Research ServiceDavis, CA, USA
- Department of Plant Sciences, University of California at DavisDavis, CA, USA
- *Correspondence: Chao Ma, Cai-Zhong Jiang,
| | - Chao Ma
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural UniversityBeijing, China
- *Correspondence: Chao Ma, Cai-Zhong Jiang,
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