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Mabry ME, Abrahams RS, Al-Shehbaz IA, Baker WJ, Barak S, Barker MS, Barrett RL, Beric A, Bhattacharya S, Carey SB, Conant GC, Conran JG, Dassanayake M, Edger PP, Hall JC, Hao Y, Hendriks KP, Hibberd JM, King GJ, Kliebenstein DJ, Koch MA, Leitch IJ, Lens F, Lysak MA, McAlvay AC, McKibben MTW, Mercati F, Moore RC, Mummenhoff K, Murphy DJ, Nikolov LA, Pisias M, Roalson EH, Schranz ME, Thomas SK, Yu Q, Yocca A, Pires JC, Harkess AE. Complementing model species with model clades. THE PLANT CELL 2024; 36:1205-1226. [PMID: 37824826 PMCID: PMC11062466 DOI: 10.1093/plcell/koad260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 09/07/2023] [Accepted: 09/22/2023] [Indexed: 10/14/2023]
Abstract
Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to the resources in Arabidopsis, thereby extending scope from a model species by establishing a "model clade." These Brassicales-wide traits are discussed in the context of both the model species Arabidopsis and the family Brassicaceae. We promote the utility of such a "model clade" and make suggestions for building global networks to support future studies in the model order Brassicales.
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Affiliation(s)
- Makenzie E Mabry
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA
| | - R Shawn Abrahams
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
- Department of Biochemistry, Purdue University, West Lafayette, IN 47906, USA
| | | | | | - Simon Barak
- Ben-Gurion University of the Negev, French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Midreshet Ben-Gurion, 8499000, Israel
| | - Michael S Barker
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | - Russell L Barrett
- National Herbarium of New South Wales, Australian Botanic Garden, Locked Bag 6002, Mount Annan, NSW 2567, Australia
| | - Aleksandra Beric
- Department of Psychiatry, Washington University in Saint Louis School of Medicine, St. Louis, MO 63110, USA
- NeuroGenomics and Informatics Center, Washington University in Saint Louis School of Medicine, St. Louis, MO 63108, USA
| | - Samik Bhattacharya
- Department of Biology, Botany, University of Osnabrück, D-49076 Osnabrück, Germany
| | - Sarah B Carey
- HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
| | - Gavin C Conant
- Department of Biological Sciences, Bioinformatics Research Center, Program in Genetics, North Carolina State University, Raleigh, NC 27695, USA
| | - John G Conran
- ACEBB and SGC, School of Biological Sciences, The University of Adelaide, Adelaide, SA 5005, Australia
| | - Maheshi Dassanayake
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Patrick P Edger
- Department of Horticulture, Michigan State University, East Lansing, MI 48864, USA
| | - Jocelyn C Hall
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada
| | - Yue Hao
- Cancer and Cell Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA
| | - Kasper P Hendriks
- Department of Biology, Botany, University of Osnabrück, D-49076 Osnabrück, Germany
- Functional Traits, Naturalis Biodiversity Center, PO Box 9517, Leiden 2300 RA, the Netherlands
| | - Julian M Hibberd
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 1TN, UK
| | - Graham J King
- Southern Cross Plant Science, Southern Cross University, Lismore, NSW 2480, Australia
| | | | - Marcus A Koch
- Centre for Organismal Studies (COS), Heidelberg University, 69120 Heidelberg, Germany
| | - Ilia J Leitch
- Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK
| | - Frederic Lens
- Functional Traits, Naturalis Biodiversity Center, PO Box 9517, Leiden 2300 RA, the Netherlands
- Institute of Biology Leiden, Plant Sciences, Leiden University, 2333 BE Leiden, the Netherlands
| | - Martin A Lysak
- CEITEC, and NCBR, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic
| | - Alex C McAlvay
- Institute of Economic Botany, New York Botanical Garden, The Bronx, NY 10458, USA
| | - Michael T W McKibben
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | - Francesco Mercati
- National Research Council (CNR), Institute of Biosciences and Bioresource (IBBR), Palermo 90129, Italy
| | | | - Klaus Mummenhoff
- Department of Biology, Botany, University of Osnabrück, D-49076 Osnabrück, Germany
| | - Daniel J Murphy
- Royal Botanic Gardens Victoria, Melbourne, VIC 3004, Australia
| | | | - Michael Pisias
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Eric H Roalson
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - M Eric Schranz
- Biosystematics Group, Wageningen University, 6708 PB Wageningen, the Netherlands
| | - Shawn K Thomas
- Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA
- Bioinformatics and Analytics Core, University of Missouri, Columbia, MO 65211, USA
| | - Qingyi Yu
- Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Hilo, HI 96720, USA
| | - Alan Yocca
- HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
| | - J Chris Pires
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523-1170, USA
| | - Alex E Harkess
- HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
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Krintza N, Dener E, Seifan M. Stress Induces Trait Variability across Multiple Spatial Scales in the Arid Annual Plant Anastatica hierochuntica. PLANTS (BASEL, SWITZERLAND) 2024; 13:256. [PMID: 38256809 PMCID: PMC10820187 DOI: 10.3390/plants13020256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/21/2023] [Accepted: 01/04/2024] [Indexed: 01/24/2024]
Abstract
Variations in plant characteristics in response to habitat heterogeneity can provide valuable insights into the mechanisms governing plant responses to environmental conditions. In this study, we investigated the role of environmental factors associated with arid conditions in shaping the phenotypic responses of an arid annual plant, Anastatica hierochuntica, across several populations found along an aridity gradient and across multiple spatial scales. Utilizing both field surveys and a net house experiment, we assessed the effects of environmental factors on trait variability within and between populations. The results indicated a significant convergence in plant height due to site aridity, reflecting growth potential based on abiotic resources. Convergence was also observed in the plant's electrolyte leakage with aridity and in plant height concerning soil salinity at specific sites. Phenotypic plasticity was pivotal in maintaining trait variability, with plant height plasticity increasing with soil salinity, SLA plasticity decreasing with aridity, and leaf number plasticity rising with aridity. In conclusion, our findings underscore the adaptive significance of phenotypic variability, especially plasticity, in arid conditions. Notably, trait variability and plasticity did not consistently diminish in stressful settings, emphasizing the adaptive value of flexible responses in such environments.
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Affiliation(s)
- Nir Krintza
- Albert Katz International School for Desert Studies, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion 8499000, Israel;
| | - Efrat Dener
- Mitrani Department of Desert Ecology, Swiss Institute for Dryland Environment and Energy Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion 8499000, Israel;
| | - Merav Seifan
- Mitrani Department of Desert Ecology, Swiss Institute for Dryland Environment and Energy Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion 8499000, Israel;
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3
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Eshel G, Duppen N, Wang G, Oh D, Kazachkova Y, Herzyk P, Amtmann A, Gordon M, Chalifa‐Caspi V, Oscar MA, Bar‐David S, Marshall‐Colon A, Dassanayake M, Barak S. Positive selection and heat-response transcriptomes reveal adaptive features of the Brassicaceae desert model, Anastatica hierochuntica. THE NEW PHYTOLOGIST 2022; 236:1006-1026. [PMID: 35909295 PMCID: PMC9804903 DOI: 10.1111/nph.18411] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
Plant adaptation to a desert environment and its endemic heat stress is poorly understood at the molecular level. The naturally heat-tolerant Brassicaceae species Anastatica hierochuntica is an ideal extremophyte model to identify genetic adaptations that have evolved to allow plants to tolerate heat stress and thrive in deserts. We generated an A. hierochuntica reference transcriptome and identified extremophyte adaptations by comparing Arabidopsis thaliana and A. hierochuntica transcriptome responses to heat, and detecting positively selected genes in A. hierochuntica. The two species exhibit similar transcriptome adjustment in response to heat and the A. hierochuntica transcriptome does not exist in a constitutive heat 'stress-ready' state. Furthermore, the A. hierochuntica global transcriptome as well as heat-responsive orthologs, display a lower basal and higher heat-induced expression than in A. thaliana. Genes positively selected in multiple extremophytes are associated with stomatal opening, nutrient acquisition, and UV-B induced DNA repair while those unique to A. hierochuntica are consistent with its photoperiod-insensitive, early-flowering phenotype. We suggest that evolution of a flexible transcriptome confers the ability to quickly react to extreme diurnal temperature fluctuations characteristic of a desert environment while positive selection of genes involved in stress tolerance and early flowering could facilitate an opportunistic desert lifestyle.
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Affiliation(s)
- Gil Eshel
- Albert Katz International School for Desert StudiesBen‐Gurion University of the NegevSde Boqer CampusMidreshet Ben‐Gurion8499000Israel
| | - Nick Duppen
- Albert Katz International School for Desert StudiesBen‐Gurion University of the NegevSde Boqer CampusMidreshet Ben‐Gurion8499000Israel
| | - Guannan Wang
- Department of Biological SciencesLouisiana State UniversityBaton RougeLA70803USA
| | - Dong‐Ha Oh
- Department of Biological SciencesLouisiana State UniversityBaton RougeLA70803USA
| | - Yana Kazachkova
- Albert Katz International School for Desert StudiesBen‐Gurion University of the NegevSde Boqer CampusMidreshet Ben‐Gurion8499000Israel
| | - Pawel Herzyk
- Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life SciencesUniversity of GlasgowGlasgowG12 8QQUK
| | - Anna Amtmann
- Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life SciencesUniversity of GlasgowGlasgowG12 8QQUK
| | - Michal Gordon
- Bioinformatics Core Facility, The National Institute for Biotechnology in the NegevBen‐Gurion University of the NegevBeer‐Sheva8410501Israel
| | - Vered Chalifa‐Caspi
- Bioinformatics Core Facility, The National Institute for Biotechnology in the NegevBen‐Gurion University of the NegevBeer‐Sheva8410501Israel
| | - Michelle Arland Oscar
- Blaustein Center for Scientific CooperationBen‐Gurion University of the NegevSde Boqer CampusMidreshet Ben‐Gurion8499000Israel
| | - Shirli Bar‐David
- Mitrani Department of Desert Ecology, Jacob Blaustein Institutes for Desert ResearchBen‐Gurion University of the NegevSde Boqer CampusMidreshet Ben‐Gurion8499000Israel
| | - Amy Marshall‐Colon
- Department of Plant BiologyUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
| | - Maheshi Dassanayake
- Department of Biological SciencesLouisiana State UniversityBaton RougeLA70803USA
| | - Simon Barak
- French Associates' Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert ResearchBen‐Gurion University of the NegevSde Boqer CampusMidreshet Ben‐Gurion8499000Israel
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Ghaleb Dailah H. The ethnomedicinal evidences pertaining to traditional medicinal herbs used in the treatment of respiratory illnesses and disorders in Saudi Arabia: A review. Saudi J Biol Sci 2022; 29:103386. [PMID: 35928928 PMCID: PMC9344334 DOI: 10.1016/j.sjbs.2022.103386] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 06/13/2022] [Accepted: 07/16/2022] [Indexed: 11/22/2022] Open
Abstract
Due to their prevalence, respiratory diseases have attained great attention from the historical time. Furthermore, it has been explored in a new dimension due to recent viral outbreaks such as COVID-19. Even though modern medicine treats the majority of respiratory ailments, it is reported that the majority of people (≥80 %) who suffer from respiratory disorders do not take medication for their conditions, and a considerable number of people still believe in and use herbal medicines. Herbal therapies have been utilized all over the world for thousands of years. Traditional herbal treatment has long been seen as a valuable practice in Saudi Arabia, long before modern medicine. Due to its location in the desert and humid climate, Saudi Arabia suffers from a high rate of respiratory illnesses caused by dust, pollens, and viruses. Several published literature have employed different plants and plant products for respiratory problems, but there has yet to be a single, complete study centered on Saudi Arabia. In this review, 41 plants were identified, which has complete details regarding their usage in traditional practice for respiratory disorders. A thorough investigation was conducted and the results were detailed.
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Li C, Duan C, Zhang H, Zhao Y, Meng Z, Zhao Y, Zhang Q. Adaptative Mechanisms of Halophytic Eutrema salsugineum Encountering Saline Environment. FRONTIERS IN PLANT SCIENCE 2022; 13:909527. [PMID: 35837468 PMCID: PMC9274170 DOI: 10.3389/fpls.2022.909527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Salt cress (Eutrema salsugineum), an Arabidopsis-related halophyte, can naturally adapt to various harsh climates and soil conditions; thus, it is considered a desirable model plant for deciphering mechanisms of salt and other abiotic stresses. Accumulating evidence has revealed that compared with Arabidopsis, salt cress possesses stomata that close more tightly and more succulent leaves during extreme salt stress, a noticeably higher level of proline, inositols, sugars, and organic acids, as well as stress-associated transcripts in unstressed plants, and they are induced rapidly under stress. In this review, we systematically summarize the research on the morphology, physiology, genome, gene expression and regulation, and protein and metabolite profile of salt cress under salt stress. We emphasize the latest advances in research on the genome adaptive evolution encountering saline environments, and epigenetic regulation, and discuss the mechanisms underlying salt tolerance in salt cress. Finally, we discuss the existing questions and opportunities for future research in halophytic Eutrema. Together, the review fosters a better understanding of the mechanism of plant salt tolerance and provides a reference for the research and utilization of Eutrema as a model extremophile in the future. Furthermore, the prospects for salt cress applied to explore the mechanism of salt tolerance provide a theoretical basis to develop new strategies for agricultural biotechnology.
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Affiliation(s)
- Chuanshun Li
- Shandong Provincial Key Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, China
| | - Chonghao Duan
- Shandong Provincial Key Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, China
| | - Hengyang Zhang
- Shandong Provincial Key Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, China
| | - Yaoyao Zhao
- Shandong Provincial Key Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, China
| | - Zhe Meng
- Research Team of Plant Pathogen Microbiology and Immunology, College of Life Science, Shandong Normal University, Jinan, China
| | - Yanxiu Zhao
- Shandong Provincial Key Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, China
| | - Quan Zhang
- Shandong Provincial Key Laboratory of Plant Stress Research, College of Life Science, Shandong Normal University, Jinan, China
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A mechano-sensing mechanism for waving in plant roots. Sci Rep 2022; 12:9635. [PMID: 35688922 PMCID: PMC9187721 DOI: 10.1038/s41598-022-14093-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 06/01/2022] [Indexed: 11/15/2022] Open
Abstract
Arabidopsis roots grown on inclined agar surfaces exhibit unusual sinusoidal patterns known as root-waving. The origin of these patterns has been ascribed to both genetic and environmental factors. Here we propose a mechano-sensing model for root-waving, based on a combination of friction induced by gravitropism, the elasticity of the root and the anchoring of the root to the agar by thin hairs, and demonstrate its relevance to previously obtained experimental results. We further test the applicability of this model by performing experiments in which we measure the effect of gradually changing the inclination angles of the agar surfaces on the wavelength and other properties of the growing roots. We find that the observed dynamics is different than the dynamics reported in previous works, but that it can still be explained using the same mechano-sensing considerations. This is supported by the fact that a scaling relation derived from the model describes the observed dependence of the wavelength on the tilt angle for a large range of angles. We also compare the prevalence of waving in different plant species and show that it depends on root thickness as predicted by the model. The results indicate that waving can be explained using mechanics and gravitropism alone and that mechanics may play a greater role in root growth and form than was previously considered.
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Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. ×cambivora. J Fungi (Basel) 2022; 8:jof8030298. [PMID: 35330301 PMCID: PMC8949215 DOI: 10.3390/jof8030298] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Revised: 03/08/2022] [Accepted: 03/10/2022] [Indexed: 01/08/2023] Open
Abstract
Phytophthora infections are followed by histological alterations, physiological and metabolomic adjustments in the host but very few studies contemplate these changes simultaneously. Fagus sylvatica seedlings were inoculated with A1 and A2 mating types of the heterothallic P. ×cambivora and with the homothallic P. plurivora to identify plant physiological and metabolomic changes accompanying microscope observations of the colonization process one, two and three weeks after inoculation. Phytophthora plurivora-infected plants died at a faster pace than those inoculated with P. ×cambivora and showed higher mortality than P. ×cambivora A1-infected plants. Phytophthora ×cambivora A1 and A2 caused similar progression and total rate of mortality. Most differences in the physiological parameters between inoculated and non-inoculated plants were detected two weeks after inoculation. Alterations in primary and secondary metabolites in roots and leaves were demonstrated for all the inoculated plants two and three weeks after inoculation. The results indicate that P. plurivora is more aggressive to Fagus sylvatica seedlings than both mating types of P. ×cambivora while P. ×cambivora A1 showed a slower infection mode than P. ×cambivora A2 and led to minor plant metabolomic adjustments.
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Barros NLF, Marques DN, Tadaiesky LBA, de Souza CRB. Halophytes and other molecular strategies for the generation of salt-tolerant crops. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 162:581-591. [PMID: 33773233 DOI: 10.1016/j.plaphy.2021.03.028] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 03/13/2021] [Indexed: 05/27/2023]
Abstract
The current increase in salinity can intensify the disparity between potential and actual crop yields, thus affecting economies and food security. One of the mitigating alternatives is plant breeding via biotechnology, where advances achieved so far are significant. Considering certain aspects when developing studies related to plant breeding can determine the success and accuracy of experimental design. Besides this strategy, halophytes with intrinsic and efficient abilities against salinity can be used as models for improving the response of crops to salinity stress. As crops are mostly glycophytes, it is crucial to point out the molecular differences between these two groups of plants, which may be the key to guiding and optimizing the transformation of glycophytes with halophytic tolerance genes. Therefore, this can broaden perspectives in the trajectory of research towards the cultivation, commercialization, and consumption of salt-tolerant crops on a large scale.
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Affiliation(s)
| | - Deyvid Novaes Marques
- Departamento de Genética, Universidade de São Paulo, Escola Superior de Agricultura "Luiz de Queiroz", Piracicaba, SP, CEP 13418-900, Brazil
| | - Lorene Bianca Araújo Tadaiesky
- Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, CEP 66075-110, Brazil; Programa de Pós-Graduação em Agronomia, Universidade Federal Rural da Amazônia, Belém, PA, CEP 66077-530, Brazil
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Llauradó Maury G, Méndez Rodríguez D, Hendrix S, Escalona Arranz JC, Fung Boix Y, Pacheco AO, García Díaz J, Morris-Quevedo HJ, Ferrer Dubois A, Aleman EI, Beenaerts N, Méndez-Santos IE, Orberá Ratón T, Cos P, Cuypers A. Antioxidants in Plants: A Valorization Potential Emphasizing the Need for the Conservation of Plant Biodiversity in Cuba. Antioxidants (Basel) 2020; 9:E1048. [PMID: 33121046 PMCID: PMC7693031 DOI: 10.3390/antiox9111048] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 10/21/2020] [Accepted: 10/23/2020] [Indexed: 12/15/2022] Open
Abstract
Plants are phytochemical hubs containing antioxidants, essential for normal plant functioning and adaptation to environmental cues and delivering beneficial properties for human health. Therefore, knowledge on the antioxidant potential of different plant species and their nutraceutical and pharmaceutical properties is of utmost importance. Exploring this scientific research field provides fundamental clues on (1) plant stress responses and their adaptive evolution to harsh environmental conditions and (2) (new) natural antioxidants with a functional versatility to prevent and treat human pathologies. These natural antioxidants can be valorized via plant-derived foods and products. Cuba contains an enormously rich plant biodiversity harboring a great antioxidant potential. Besides opening new avenues for the implementation of sustainable agroecological practices in crop production, it will also contribute to new strategies to preserve plant biodiversity and simultaneously improve nature management policies in Cuba. This review provides an overview on the beneficial properties of antioxidants for plant protection and human health and is directed to the valorization of these plant antioxidants, emphasizing the need for biodiversity conservation.
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Affiliation(s)
- Gabriel Llauradó Maury
- Centre of Studies for Industrial Biotechnology (CEBI), University of Oriente, Avenida Patricio Lumumba s/n, Reparto Jiménez, Santiago de Cuba CP 90500, Cuba; (G.L.M.); (H.J.M.-Q.); (T.O.R.)
| | - Daniel Méndez Rodríguez
- Faculty of Applied Sciences, University of Camagüey, Carretera Circunvalación Norte, km 5 ½, Camagüey CP 70100, Cuba; (D.M.R.); (I.E.M.-S.)
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, BE-3590 Diepenbeek, Belgium; (S.H.); (N.B.)
- Laboratory for Microbiology, Parasitology and Hygiene (LMPH), University of Antwerp, Universiteitsplein 1, BE-2610 Antwerp, Belgium
| | - Sophie Hendrix
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, BE-3590 Diepenbeek, Belgium; (S.H.); (N.B.)
| | - Julio César Escalona Arranz
- Pharmacy Department, University of Oriente, Avenida Patricio Lumumba s/n, Reparto Jiménez, Santiago de Cuba CP 90500, Cuba; (J.C.E.A.); (A.O.P.); (J.G.D.)
| | - Yilan Fung Boix
- National Center of Applied Electromagnetism, University of Oriente, Avenida Las Américas s/n, P.O. Box 4078, Santiago de Cuba CP 90400, Cuba; (Y.F.B.); (A.F.D.); (E.I.A.)
| | - Ania Ochoa Pacheco
- Pharmacy Department, University of Oriente, Avenida Patricio Lumumba s/n, Reparto Jiménez, Santiago de Cuba CP 90500, Cuba; (J.C.E.A.); (A.O.P.); (J.G.D.)
| | - Jesús García Díaz
- Pharmacy Department, University of Oriente, Avenida Patricio Lumumba s/n, Reparto Jiménez, Santiago de Cuba CP 90500, Cuba; (J.C.E.A.); (A.O.P.); (J.G.D.)
| | - Humberto J. Morris-Quevedo
- Centre of Studies for Industrial Biotechnology (CEBI), University of Oriente, Avenida Patricio Lumumba s/n, Reparto Jiménez, Santiago de Cuba CP 90500, Cuba; (G.L.M.); (H.J.M.-Q.); (T.O.R.)
| | - Albys Ferrer Dubois
- National Center of Applied Electromagnetism, University of Oriente, Avenida Las Américas s/n, P.O. Box 4078, Santiago de Cuba CP 90400, Cuba; (Y.F.B.); (A.F.D.); (E.I.A.)
| | - Elizabeth Isaac Aleman
- National Center of Applied Electromagnetism, University of Oriente, Avenida Las Américas s/n, P.O. Box 4078, Santiago de Cuba CP 90400, Cuba; (Y.F.B.); (A.F.D.); (E.I.A.)
| | - Natalie Beenaerts
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, BE-3590 Diepenbeek, Belgium; (S.H.); (N.B.)
| | - Isidro E. Méndez-Santos
- Faculty of Applied Sciences, University of Camagüey, Carretera Circunvalación Norte, km 5 ½, Camagüey CP 70100, Cuba; (D.M.R.); (I.E.M.-S.)
| | - Teresa Orberá Ratón
- Centre of Studies for Industrial Biotechnology (CEBI), University of Oriente, Avenida Patricio Lumumba s/n, Reparto Jiménez, Santiago de Cuba CP 90500, Cuba; (G.L.M.); (H.J.M.-Q.); (T.O.R.)
| | - Paul Cos
- Laboratory for Microbiology, Parasitology and Hygiene (LMPH), University of Antwerp, Universiteitsplein 1, BE-2610 Antwerp, Belgium
| | - Ann Cuypers
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, BE-3590 Diepenbeek, Belgium; (S.H.); (N.B.)
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Khadka J, Raviv B, Swetha B, Grandhi R, Singiri JR, Novoplansky N, Gutterman Y, Galis I, Huang Z, Grafi G. Maternal environment alters dead pericarp biochemical properties of the desert annual plant Anastatica hierochuntica L. PLoS One 2020; 15:e0237045. [PMID: 32735576 PMCID: PMC7394380 DOI: 10.1371/journal.pone.0237045] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 07/17/2020] [Indexed: 11/18/2022] Open
Abstract
The dead organs enclosing embryos (DOEEs) emerge as central components of the dispersal unit (DU) capable for long-term storage of active proteins and other substances that affect seed performance and fate. We studied the effect of maternal environment (salt and salt+heat) on progeny DU (dry indehiscent fruit) focusing on pericarp properties of Anastatica hierochuntica. Stressed plants displayed increased seed abortion and low level and rate of germination. Hydrated pericarps released antimicrobial factors and allelopathic substances that inhibit germination of heterologous species. Proteome analysis of dead pericarps revealed hundreds of proteins, among them nucleases, chitinases and proteins involved in reactive oxygen species detoxification and cell wall modification. Salt treatment altered the composition and level of proteins stored in the pericarp. We observed changes in protein profile released from seeds of salt-treated plants with a notable increase in a small anti-fungal protein, defensin. The levels of phytohormones including IAA, ABA and salicylic acid were reduced in dead pericarps of stressed plants. The data presented here highlighted the predominant effects of maternal environment on progeny DUs of the desert plant A. hierochuntica, particularly on pericarp properties, which in turn might affect seed performance and fate, soil fertility and consequently plant biodiversity.
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Affiliation(s)
- Janardan Khadka
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Buzi Raviv
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Bupur Swetha
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Rohith Grandhi
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Jeevan R. Singiri
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Nurit Novoplansky
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Yitzchak Gutterman
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Ivan Galis
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama, Japan
| | - Zhenying Huang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Gideon Grafi
- French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, Israel
- * E-mail:
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11
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Frazier PA, Jamone L, Althoefer K, Calvo P. Plant Bioinspired Ecological Robotics. Front Robot AI 2020; 7:79. [PMID: 33501246 PMCID: PMC7805641 DOI: 10.3389/frobt.2020.00079] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 05/08/2020] [Indexed: 12/30/2022] Open
Abstract
Plants are movers, but the nature of their movement differs dramatically from that of creatures that move their whole body from point A to point B. Plants grow to where they are going. Bio-inspired robotics sometimes emulates plants' growth-based movement; but growing is part of a broader system of movement guidance and control. We argue that ecological psychology's conception of "information" and "control" can simultaneously make sense of what it means for a plant to navigate its environment and provide a control scheme for the design of ecological plant-inspired robotics. In this effort, we will outline several control laws and give special consideration to the class of control laws identified by tau theory, such as time to contact.
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Affiliation(s)
- P. Adrian Frazier
- MINTLab - Minimal Intelligence Lab, Universidad de Murcia, Murcia, Spain
- Center for the Ecological Study of Perception and Action University of Connecticut, Storrs, CT, United States
| | - Lorenzo Jamone
- Centre for Advanced Robotics @ Queen Mary (ARQ), School of Electronic Engineering and Computer Science, Queen Mary University of London, London, United Kingdom
| | - Kaspar Althoefer
- Centre for Advanced Robotics @ Queen Mary (ARQ), School of Electronic Engineering and Computer Science, Queen Mary University of London, London, United Kingdom
| | - Paco Calvo
- MINTLab - Minimal Intelligence Lab, Universidad de Murcia, Murcia, Spain
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12
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Negin B, Moshelion M. Remember where you came from: ABA insensitivity is epigenetically inherited in mesophyll, but not seeds. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 295:110455. [PMID: 32534619 DOI: 10.1016/j.plantsci.2020.110455] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 02/10/2020] [Accepted: 02/16/2020] [Indexed: 05/11/2023]
Abstract
Plants transmit their experiences of environmental conditions to their progeny through epigenetic inheritance, improving their progeny's fitness under prevailing conditions. Though ABA is known to regulate epigenetic-modification genes, no strong phenotypic link between those genes and intergenerational "memory" has been shown. Previously, we demonstrated that mesophyll insensitivity to ABA (FBPase::abi1-1{fa} transgenic plants) results in a range of developmental phenotypes, including early growth vigor and early flowering (i.e., stress-escape behavior). Here, we show that null plants, used as controls (segregates of FBPase::abi1 that are homozygote descendants of a heterozygous transgenic plant, but do not contain the transformed abi1-1 gene) phenotypically resembled their FBPase::abi1-1 parents. However, in germination and early seedling development assays, null segregants resembled WT plants. These FBPase::abi1-1 null segregants mesophyll-related phenotypes were reproducible and stable for at least three generations. These results suggest that the heritability of stress response is linked to ABA's epigenetic regulatory effect through ABI1 and mesophyll-related traits. The discrepancy between the epigenetic heritability of seed and mesophyll-related traits is an example of the complexity of epigenetic regulation, which is both gene and process-specific, and may be attributed to the fine-tuning of tradeoffs between flowering time, growth rate and levels of risk that allow annual plants to optimize their fitness in uncertain environments.
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Affiliation(s)
- Boaz Negin
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 7610001, Israel
| | - Menachem Moshelion
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 7610001, Israel.
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13
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Saleh KA, Albinhassan TH, Elbehairi SEI, Alshehry MA, Alfaifi MY, Al-Ghazzawi AM, Al-Kahtani MA, Alasmari ADA. Cell Cycle Arrest in Different Cancer Cell Lines (Liver, Breast, and Colon) Induces Apoptosis under the Influence of the Chemical Content of Aeluropus lagopoides Leaf Extracts. Molecules 2019; 24:E507. [PMID: 30708938 PMCID: PMC6384719 DOI: 10.3390/molecules24030507] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2018] [Revised: 01/23/2019] [Accepted: 01/29/2019] [Indexed: 01/25/2023] Open
Abstract
Natural products, especially secondary metabolites produced by plants under stressed conditions, are shown to have different pharmacological impacts from one to another. Aeluropus lagopoides is one of the common halophyte plants that survive under stressed conditions, and has been used for healing wounds and as a painkiller. The bioactivity and the chemical composition of this plant have been poorly investigated. Consequently, the chemical components of A. lagopoides leaves were extracted using hexane (nonpolar), ethyl acetate (semi-polar), and n-butanol (polar) to extract the most extensive variety of metabolites. The cytotoxicity and anticancer impact of extracted secondary metabolites were evaluated against breast (MCF-7), colon (HCT-116), and liver (HepG2) cancer cell lines using a SulphoRhodamine-B (SRB) test. Their mechanisms of action were verified by observing the appearance of apoptotic bodies using the fluorescent microscope, while their antiproliferative impacts were evaluated using a flow cytometer. Results revealed that secondary metabolites extracted using hexane and ethyl acetate had the highest cytotoxicity and thus the greatest anticancer activity effect on HepG2 with IC50 (24.29 ± 0.85 and 11.22 ± 0.679 µg/mL, respectively). On the other hand, flow cytometer results showed that secondary metabolites could inhibit the cell cycle in the G0/G1 phase. To ascertain the chemical composition⁻function relationship, the extracts were analyzed using LC-MS/MS. Accordingly, A. lagopoides hexane and ethyl acetate extracts may contain agents with anticancer potential.
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Affiliation(s)
- Kamel A Saleh
- Department of Biology, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Tahani H Albinhassan
- Department of Biology, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Serage Eldin I Elbehairi
- Department of Biology, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Mohammed A Alshehry
- Department of Biology, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Mohammad Y Alfaifi
- Department of Biology, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Adel M Al-Ghazzawi
- Department of Chemistry, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Mohamed A Al-Kahtani
- Department of Biology, Science College, King Khalid University, P.O. Box 9004 Abha, Saudi Arabia.
| | - Abdullah D A Alasmari
- Asser Toxicology Center, King Abduallah Street, 61441, P.O. Box 1988 Abha, Saudi Arabia.
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14
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Guggisberg A, Liu X, Suter L, Mansion G, Fischer MC, Fior S, Roumet M, Kretzschmar R, Koch MA, Widmer A. The genomic basis of adaptation to calcareous and siliceous soils in Arabidopsis lyrata. Mol Ecol 2018; 27:5088-5103. [PMID: 30411828 DOI: 10.1111/mec.14930] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 10/03/2018] [Accepted: 10/04/2018] [Indexed: 12/27/2022]
Abstract
Edaphic conditions are important determinants of plant fitness. While much has been learnt in recent years about plant adaptation to heavy metal contaminated soils, the genomic basis underlying adaptation to calcareous and siliceous substrates remains largely unknown. We performed a reciprocal germination experiment and whole-genome resequencing in natural calcareous and siliceous populations of diploid Arabidopsis lyrata to test for edaphic adaptation and detect signatures of selection at loci associated with soil-mediated divergence. In parallel, genome scans on respective diploid ecotypes from the Arabidopsis arenosa species complex were undertaken, to search for shared patterns of adaptive genetic divergence. Soil ecotypes of A. lyrata display significant genotype-by-treatment responses for seed germination. Sequence (SNPs) and copy-number variants (CNVs) point towards loci involved in ion transport as the main targets of adaptive genetic divergence. Two genes exhibiting high differentiation among soil types in A. lyrata further share trans-specific single nucleotide polymorphisms with A. arenosa. This work applies experimental and genomic approaches to study edaphic adaptation in A. lyrata and suggests that physiological response to elemental toxicity and deficiency underlies the evolution of calcareous and siliceous ecotypes. The discovery of shared adaptive variation between sister species indicates that ancient polymorphisms contribute to adaptive evolution.
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Affiliation(s)
| | - Xuanyu Liu
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Léonie Suter
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Guilhem Mansion
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Martin C Fischer
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Simone Fior
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Marie Roumet
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Ruben Kretzschmar
- Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, Zurich, Switzerland
| | - Marcus A Koch
- Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany
| | - Alex Widmer
- Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
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15
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Maggio A, Bressan RA, Zhao Y, Park J, Yun DJ. It's Hard to Avoid Avoidance: Uncoupling the Evolutionary Connection between Plant Growth, Productivity and Stress "Tolerance". Int J Mol Sci 2018; 19:E3671. [PMID: 30463352 PMCID: PMC6274854 DOI: 10.3390/ijms19113671] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2018] [Revised: 11/06/2018] [Accepted: 11/15/2018] [Indexed: 12/03/2022] Open
Abstract
In the last 100 years, agricultural developments have favoured selection for highly productive crops, a fact that has been commonly associated with loss of key traits for environmental stress tolerance. We argue here that this is not exactly the case. We reason that high yield under near optimal environments came along with hypersensitization of plant stress perception and consequently early activation of stress avoidance mechanisms, such as slow growth, which were originally needed for survival over long evolutionary time periods. Therefore, mechanisms employed by plants to cope with a stressful environment during evolution were overwhelmingly geared to avoid detrimental effects so as to ensure survival and that plant stress "tolerance" is fundamentally and evolutionarily based on "avoidance" of injury and death which may be referred to as evolutionary avoidance (EVOL-Avoidance). As a consequence, slow growth results from being exposed to stress because genes and genetic programs to adjust growth rates to external circumstances have evolved as a survival but not productivity strategy that has allowed extant plants to avoid extinction. To improve productivity under moderate stressful conditions, the evolution-oriented plant stress response circuits must be changed from a survival mode to a continued productivity mode or to avoid the evolutionary avoidance response, as it were. This may be referred to as Agricultural (AGRI-Avoidance). Clearly, highly productive crops have kept the slow, reduced growth response to stress that they evolved to ensure survival. Breeding programs and genetic engineering have not succeeded to genetically remove these responses because they are polygenic and redundantly programmed. From the beginning of modern plant breeding, we have not fully appreciated that our crop plants react overly-cautiously to stress conditions. They over-reduce growth to be able to survive stresses for a period of time much longer than a cropping season. If we are able to remove this polygenic redundant survival safety net we may improve yield in moderately stressful environments, yet we will face the requirement to replace it with either an emergency slow or no growth (dormancy) response to extreme stress or use resource management to rescue crops under extreme stress (or both).
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Affiliation(s)
- Albino Maggio
- Department of Agricultural Science, University of Napoli Federico II, 80055 Portici, NA, Italy.
| | - Ray A Bressan
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907-2010, USA.
| | - Yang Zhao
- Shanghai Center for Plant Stress Biology and CAS Center of Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
| | - Junghoon Park
- Department of Biomedical Science and Engineering Konkuk University, Seoul 05029, Korea.
| | - Dae-Jin Yun
- Department of Biomedical Science and Engineering Konkuk University, Seoul 05029, Korea.
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16
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Kazachkova Y, Eshel G, Pantha P, Cheeseman JM, Dassanayake M, Barak S. Halophytism: What Have We Learnt From Arabidopsis thaliana Relative Model Systems? PLANT PHYSIOLOGY 2018; 178:972-988. [PMID: 30237204 PMCID: PMC6236594 DOI: 10.1104/pp.18.00863] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 08/31/2018] [Indexed: 05/06/2023]
Abstract
Halophytes are able to thrive in salt concentrations that would kill 99% of other plant species, and identifying their salt-adaptive mechanisms has great potential for improving the tolerance of crop plants to salinized soils. Much research has focused on the physiological basis of halophyte salt tolerance, whereas the elucidation of molecular mechanisms has traditionally lagged behind due to the absence of a model halophyte system. However, over the last decade and a half, two Arabidopsis (Arabidopsis thaliana) relatives, Eutrema salsugineum and Schrenkiella parvula, have been established as transformation-competent models with various genetic resources including high-quality genome assemblies. These models have facilitated powerful comparative analyses with salt-sensitive Arabidopsis to unravel the genetic adaptations that enable a halophytic lifestyle. The aim of this review is to explore what has been learned about halophytism using E. salsugineum and S. parvula We consider evidence from physiological and molecular studies suggesting that differences in salt tolerance between related halophytes and salt-sensitive plants are associated with alterations in the regulation of basic physiological, biochemical, and molecular processes. Furthermore, we discuss how salt tolerance mechanisms of the halophytic models are reflected at the level of their genomes, where evolutionary processes such as subfunctionalization and/or neofunctionalization have altered the expression and/or functions of genes to facilitate adaptation to saline conditions. Lastly, we summarize the many areas of research still to be addressed with E. salsugineum and S. parvula as well as obstacles hindering further progress in understanding halophytism.
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Affiliation(s)
- Yana Kazachkova
- French Associates' Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion 8499000, Israel
| | - Gil Eshel
- French Associates' Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion 8499000, Israel
| | - Pramod Pantha
- Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana 70803
| | - John M Cheeseman
- Department of Plant Biology, University of Illinois, Urbana, Illinois 61801
| | - Maheshi Dassanayake
- Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana 70803
| | - Simon Barak
- French Associates' Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion 8499000, Israel
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17
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Fan L, Wang G, Hu W, Pantha P, Tran KN, Zhang H, An L, Dassanayake M, Qiu QS. Transcriptomic view of survival during early seedling growth of the extremophyte Haloxylon ammodendron. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 132:475-489. [PMID: 30292980 DOI: 10.1016/j.plaphy.2018.09.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 09/08/2018] [Accepted: 09/18/2018] [Indexed: 05/27/2023]
Abstract
Seedling establishment in an extreme environment requires an integrated genomic and physiological response to survive multiple abiotic stresses. The extremophyte, Haloxylon ammodendron is a pioneer species capable of colonizing temperate desert sand dunes. We investigated the induced and basal transcriptomes in H. ammodendron under water-deficit stress during early seedling establishment. We find that not only drought-responsive genes, but multiple genes in pathways associated with salt, osmotic, cold, UV, and high-light stresses were induced, suggesting an altered regulatory stress response system. Additionally, H. ammodendron exhibited enhanced biotic stress tolerance by down-regulation of genes that were generally up-regulated during pathogen entry in susceptible plants. By comparing the H. ammodendron basal transcriptome to six closely related transcriptomes in Amaranthaceae, we detected enriched basal level transcripts in H. ammodendron that shows preadaptation to abiotic stress and pathogens. We found transcripts that were generally maintained at low levels and some induced only under abiotic stress in the stress-sensitive model, Arabidopsis thaliana to be highly expressed under basal conditions in the Amaranthaceae transcriptomes including H. ammodendron. H. ammodendron shows coordinated expression of genes that regulate stress tolerance and seedling development resource allocation to support survival against multiple stresses in a sand dune dominated temperate desert environment.
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Affiliation(s)
- Ligang Fan
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Guannan Wang
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA
| | - Wei Hu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Pramod Pantha
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA
| | - Kieu-Nga Tran
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA
| | - Hua Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Lizhe An
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Maheshi Dassanayake
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA.
| | - Quan-Sheng Qiu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China.
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18
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Gairola S, Al Shaer KI, Al Harthi EK, Mosa KA. Strengthening desert plant biotechnology research in the United Arab Emirates: a viewpoint. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2018; 24:521-533. [PMID: 30042610 PMCID: PMC6041242 DOI: 10.1007/s12298-018-0551-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 02/19/2018] [Accepted: 05/08/2018] [Indexed: 05/09/2023]
Abstract
The biotechnology of desert plants is a vast subject. The main applications in this broad field of study comprises of plant tissue culture, genetic engineering, molecular markers and others. Biotechnology applications have the potential to address biodiversity conservation as well as agricultural, medicinal, and environmental issues. There is a need to increase our knowledge of the genetic diversity through the use of molecular genetics and biotechnological approaches in desert plants in the Arabian Gulf region including those in the United Arab Emirates (UAE). This article provides a prospective research for the study of UAE desert plant diversity through DNA fingerprinting as well as understanding the mechanisms of both abiotic stress resistance (including salinity, drought and heat stresses) and biotic stress resistance (including disease and insect resistance). Special attention is given to the desert halophytes and their utilization to alleviate the salinity stress, which is one of the major challenges in agriculture. In addition, symbioses with microorganisms are thought to be hypothesized as important components of desert plant survival under stressful environmental conditions. Thus, factors shaping the diversity and functionality of plant microbiomes in desert ecosystems are also emphasized in this article. It is important to establish a critical mass for biotechnology research and applications while strengthening the channels for collaboration among research/academic institutions in the area of desert plant biotechnology.
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Affiliation(s)
- Sanjay Gairola
- Sharjah Seed Bank and Herbarium, Sharjah Research Academy, University City, Sharjah, P. Box 60999, Sharjah, UAE
| | - Khawla I. Al Shaer
- Plant Molecular Biology and Biotechnology Laboratory, Sharjah Research Academy, University City, Sharjah, P. Box 60999, Sharjah, UAE
| | - Eman K. Al Harthi
- Plant Molecular Biology and Biotechnology Laboratory, Sharjah Research Academy, University City, Sharjah, P. Box 60999, Sharjah, UAE
| | - Kareem A. Mosa
- Department of Applied Biology, College of Sciences, University of Sharjah, P.O. Box 27272, Sharjah, UAE
- Department of Biotechnology, Faculty of Agriculture, Al-Azhar University, Cairo, Egypt
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19
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Bechtold U. Plant Life in Extreme Environments: How Do You Improve Drought Tolerance? FRONTIERS IN PLANT SCIENCE 2018; 9:543. [PMID: 29868044 PMCID: PMC5962824 DOI: 10.3389/fpls.2018.00543] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Accepted: 04/09/2018] [Indexed: 05/11/2023]
Abstract
Systems studies of drought stress in resurrection plants and other xerophytes are rapidly identifying a large number of genes, proteins and metabolites that respond to severe drought stress or desiccation. This has provided insight into drought resistance mechanisms, which allow xerophytes to persist under such extreme environmental conditions. Some of the mechanisms that ensure cellular protection during severe dehydration appear to be unique to desert species, while many other stress signaling pathways are in common with well-studied model and crop species. However, despite the identification of many desiccation inducible genes, there are few "gene-to-field" examples that have led to improved drought tolerance and yield stability derived from resurrection plants, and only few examples have emerged from model species. This has led to many critical reviews on the merit of the experimental approaches and the type of plants used to study drought resistance mechanisms. This article discusses the long-standing arguments between the ecophysiology and molecular biology communities, on how to "drought-proof" future crop varieties. It concludes that a more positive and inclusive dialogue between the different disciplines is needed, to allow us to move forward in a much more constructive way.
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Affiliation(s)
- Ulrike Bechtold
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
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20
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Yin J, Gosney MJ, Dilkes BP, Mickelbart MV. Dark period transcriptomic and metabolic profiling of two diverse Eutrema salsugineum accessions. PLANT DIRECT 2018; 2:e00032. [PMID: 31245703 PMCID: PMC6508522 DOI: 10.1002/pld3.32] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2017] [Revised: 12/01/2017] [Accepted: 12/08/2017] [Indexed: 05/16/2023]
Abstract
Eutrema salsugineum is a model species for the study of plant adaptation to abiotic stresses. Two accessions of E. salsugineum, Shandong (SH) and Yukon (YK), exhibit contrasting morphology and biotic and abiotic stress tolerance. Transcriptome profiling and metabolic profiling from tissue samples collected during the dark period were used to investigate the molecular and metabolic bases of these contrasting phenotypes. RNA sequencing identified 17,888 expressed genes, of which 157 were not in the published reference genome, and 65 of which were detected for the first time. Differential expression was detected for only 31 genes. The RNA sequencing data contained 14,808 single nucleotide polymorphisms (SNPs) in transcripts, 3,925 of which are newly identified. Among the differentially expressed genes, there were no obvious candidates for the physiological or morphological differences between SH and YK. Metabolic profiling indicated that YK accumulates free fatty acids and long-chain fatty acid derivatives as compared to SH, whereas sugars are more abundant in SH. Metabolite levels suggest that carbohydrate and respiratory metabolism, including starch degradation, is more active during the first half of the dark period in SH. These metabolic differences may explain the greater biomass accumulation in YK over SH. The accumulation of 56% of the identified metabolites was lower in F1 hybrids than the mid-parent averages and the accumulation of 17% of the metabolites in F1 plants transgressed the level in both parents. Concentrations of several metabolites in F1 hybrids agree with previous studies and suggest a role for primary metabolism in heterosis. The improved annotation of the E. salsugineum genome and newly identified high-quality SNPs will permit accelerated studies using the standing variation in this species to elucidate the mechanisms of its diverse adaptations to the environment.
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Affiliation(s)
- Jie Yin
- Department of Horticulture and Landscape ArchitecturePurdue UniversityWest LafayetteINUSA
| | - Michael J. Gosney
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteINUSA
| | - Brian P. Dilkes
- Department of BiochemistryPurdue UniversityWest LafayetteINUSA
| | - Michael V. Mickelbart
- Department of Horticulture and Landscape ArchitecturePurdue UniversityWest LafayetteINUSA
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteINUSA
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