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Torresani M, Rocchini D, Ceola G, de Vries JPR, Feilhauer H, Moudrý V, Bartholomeus H, Perrone M, Anderle M, Gamper HA, Chieffallo L, Guatelli E, Gatti RC, Kleijn D. Grassland vertical height heterogeneity predicts flower and bee diversity: an UAV photogrammetric approach. Sci Rep 2024; 14:809. [PMID: 38191639 PMCID: PMC10774354 DOI: 10.1038/s41598-023-50308-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 12/18/2023] [Indexed: 01/10/2024] Open
Abstract
The ecosystem services offered by pollinators are vital for supporting agriculture and ecosystem functioning, with bees standing out as especially valuable contributors among these insects. Threats such as habitat fragmentation, intensive agriculture, and climate change are contributing to the decline of natural bee populations. Remote sensing could be a useful tool to identify sites of high diversity before investing into more expensive field survey. In this study, the ability of Unoccupied Aerial Vehicles (UAV) images to estimate biodiversity at a local scale has been assessed while testing the concept of the Height Variation Hypothesis (HVH). This hypothesis states that the higher the vegetation height heterogeneity (HH) measured by remote sensing information, the higher the vegetation vertical complexity and the associated species diversity. In this study, the concept has been further developed to understand if vegetation HH can also be considered a proxy for bee diversity and abundance. We tested this approach in 30 grasslands in the South of the Netherlands, where an intensive field data campaign (collection of flower and bee diversity and abundance) was carried out in 2021, along with a UAV campaign (collection of true color-RGB-images at high spatial resolution). Canopy Height Models (CHM) of the grasslands were derived using the photogrammetry technique "Structure from Motion" (SfM) with horizontal resolution (spatial) of 10 cm, 25 cm, and 50 cm. The accuracy of the CHM derived from UAV photogrammetry was assessed by comparing them through linear regression against local CHM LiDAR (Light Detection and Ranging) data derived from an Airborne Laser Scanner campaign completed in 2020/2021, yielding an [Formula: see text] of 0.71. Subsequently, the HH assessed on the CHMs at the three spatial resolutions, using four different heterogeneity indices (Rao's Q, Coefficient of Variation, Berger-Parker index, and Simpson's D index), was correlated with the ground-based flower and bee diversity and bee abundance data. The Rao's Q index was the most effective heterogeneity index, reaching high correlations with the ground-based data (0.44 for flower diversity, 0.47 for bee diversity, and 0.34 for bee abundance). Interestingly, the correlations were not significantly influenced by the spatial resolution of the CHM derived from UAV photogrammetry. Our results suggest that vegetation height heterogeneity can be used as a proxy for large-scale, standardized, and cost-effective inference of flower diversity and habitat quality for bees.
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Affiliation(s)
- Michele Torresani
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bolzano/Bozen, Piazza Universitá/Universitätsplatz 1, 39100, Bolzano/Bozen, Italy
| | - Duccio Rocchini
- BIOME Lab, Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum University of Bologna, via Irnerio 42, 40126, Bologna, Italy.
- Department of Spatial Sciences, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcka 129, Praha - Suchdol, 16500, Czech Republic.
| | - Giada Ceola
- BIOME Lab, Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum University of Bologna, via Irnerio 42, 40126, Bologna, Italy
| | - Jan Peter Reinier de Vries
- Plant Ecology and Nature Conservation Group, Wageningen University, Droevendaalsesteeg 3a, Wageningen, 6708PB, The Netherlands
| | - Hannes Feilhauer
- Remote Sensing Centre for Earth System Research (RSC4Earth), Leipzig University, Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Remote Sensing, Helmholtz-Centre for Environmental Research - UFZ, Permoserstr. 15, 04318, Leipzig, Germany
| | - Vítězslav Moudrý
- Department of Spatial Sciences, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcka 129, Praha - Suchdol, 16500, Czech Republic
| | - Harm Bartholomeus
- Laboratory of Geo-Information Science and Remote Sensing, Wageningen University and Research, P.O. Box 47, 6700 AA, Wageningen, The Netherlands
| | - Michela Perrone
- Department of Spatial Sciences, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcka 129, Praha - Suchdol, 16500, Czech Republic
| | - Matteo Anderle
- Eurac Research, Inst. for Alpine Environment, Bolzano, Italy
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
| | - Hannes Andres Gamper
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bolzano/Bozen, Piazza Universitá/Universitätsplatz 1, 39100, Bolzano/Bozen, Italy
| | - Ludovico Chieffallo
- BIOME Lab, Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum University of Bologna, via Irnerio 42, 40126, Bologna, Italy
| | | | - Roberto Cazzolla Gatti
- BIOME Lab, Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum University of Bologna, via Irnerio 42, 40126, Bologna, Italy
| | - David Kleijn
- Plant Ecology and Nature Conservation Group, Wageningen University, Droevendaalsesteeg 3a, Wageningen, 6708PB, The Netherlands
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Falcioni R, Antunes WC, Demattê JAM, Nanni MR. Biophysical, Biochemical, and Photochemical Analyses Using Reflectance Hyperspectroscopy and Chlorophyll a Fluorescence Kinetics in Variegated Leaves. BIOLOGY 2023; 12:704. [PMID: 37237516 PMCID: PMC10215320 DOI: 10.3390/biology12050704] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 05/05/2023] [Accepted: 05/09/2023] [Indexed: 05/28/2023]
Abstract
The adjustments that occur during photosynthesis are correlated with morphological, biochemical, and photochemical changes during leaf development. Therefore, monitoring leaves, especially when pigment accumulation occurs, is crucial for monitoring organelles, cells, tissue, and whole-plant levels. However, accurately measuring these changes can be challenging. Thus, this study tests three hypotheses, whereby reflectance hyperspectroscopy and chlorophyll a fluorescence kinetics analyses can improve our understanding of the photosynthetic process in Codiaeum variegatum (L.) A. Juss, a plant with variegated leaves and different pigments. The analyses include morphological and pigment profiling, hyperspectral data, chlorophyll a fluorescence curves, and multivariate analyses using 23 JIP test parameters and 34 different vegetation indexes. The results show that photochemical reflectance index (PRI) is a useful vegetation index (VI) for monitoring biochemical and photochemical changes in leaves, as it strongly correlates with chlorophyll and nonphotochemical dissipation (Kn) parameters in chloroplasts. In addition, some vegetation indexes, such as the pigment-specific simple ratio (PSSRc), anthocyanin reflectance index (ARI1), ratio analysis of reflectance spectra (RARS), and structurally insensitive pigment index (SIPI), are highly correlated with morphological parameters and pigment levels, while PRI, moisture stress index (MSI), normalized difference photosynthetic (PVR), fluorescence ratio (FR), and normalized difference vegetation index (NDVI) are associated with photochemical components of photosynthesis. Combined with the JIP test analysis, our results showed that decreased damage to energy transfer in the electron transport chain is correlated with the accumulation of carotenoids, anthocyanins, flavonoids, and phenolic compounds in the leaves. Phenomenological energy flux modelling shows the highest changes in the photosynthetic apparatus based on PRI and SIPI when analyzed with Pearson's correlation, the hyperspectral vegetation index (HVI) algorithm, and the partial least squares (PLS) to select the most responsive wavelengths. These findings are significant for monitoring nonuniform leaves, particularly when leaves display high variation in pigment profiling in variegated and colorful leaves. This is the first study on the rapid and precise detection of morphological, biochemical, and photochemical changes combined with vegetation indexes for different optical spectroscopy techniques.
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Affiliation(s)
- Renan Falcioni
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil; (W.C.A.); (M.R.N.)
| | - Werner Camargos Antunes
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil; (W.C.A.); (M.R.N.)
| | - José A. M. Demattê
- Department of Soil Science, Luiz de Queiroz College of Agriculture, University of São Paulo, Av. Pádua Dias, 11, Piracicaba 13418-260, São Paulo, Brazil;
| | - Marcos Rafael Nanni
- Department of Agronomy, State University of Maringá, Av. Colombo, 5790, Maringá 87020-900, Paraná, Brazil; (W.C.A.); (M.R.N.)
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Ulm F, Estorninho M, de Jesus JG, de Sousa Prado MG, Cruz C, Máguas C. From a Lose-Lose to a Win-Win Situation: User-Friendly Biomass Models for Acacia longifolia to Aid Research, Management and Valorisation. PLANTS (BASEL, SWITZERLAND) 2022; 11:2865. [PMID: 36365319 PMCID: PMC9658486 DOI: 10.3390/plants11212865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 10/22/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
Woody invasive species pose a big threat to ecosystems worldwide. Among them, Acacia longifolia is especially aggressive, fundamentally changing ecosystem structure through massive biomass input. This biomass is rarely harvested for usage; thus, these plants constitute a nuisance for stakeholders who invest time and money for control without monetary return. Simultaneously, there is an increased effort to valorise its biomass, e.g., for compost, growth substrate or as biofuel. However, to incentivise A. longifolia harvest and usage, stakeholders need to be able to estimate what can be obtained from management actions. Thus, the total biomass and its quality (C/N ratio) need to be predicted to perform cost-benefit analyses for usage and determine the level of invasion that has already occurred. Here, we report allometric biomass models for major biomass pools, as well as give an overview of biomass quality. Subsequently, we derive a simplified volume-based model (BM ~ 6.297 + 0.982 × Vol; BM = total dry biomass and Vol = plant volume), which can be applied to remote sensing data or with in situ manual measurements. This toolkit will help local stakeholders, forest managers or municipalities to predict the impact and valorisation potential of this invasive species and could ultimately encourage its management.
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Affiliation(s)
- Florian Ulm
- cE3c–Center for Ecology, Evolution and Environmental Changes & CHANGE–Global Change and Sustainability Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
| | - Mariana Estorninho
- cE3c–Center for Ecology, Evolution and Environmental Changes & CHANGE–Global Change and Sustainability Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
| | - Joana Guedes de Jesus
- cE3c–Center for Ecology, Evolution and Environmental Changes & CHANGE–Global Change and Sustainability Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
| | - Miguel Goden de Sousa Prado
- cE3c–Center for Ecology, Evolution and Environmental Changes & CHANGE–Global Change and Sustainability Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
- Sousa Prado & Filhos, Agropecuária Lda, 7645-239 Vila Nova de Milfontes, Portugal
| | - Cristina Cruz
- cE3c–Center for Ecology, Evolution and Environmental Changes & CHANGE–Global Change and Sustainability Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
| | - Cristina Máguas
- cE3c–Center for Ecology, Evolution and Environmental Changes & CHANGE–Global Change and Sustainability Institute, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisbon, Portugal
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Assessment of Invasive and Weed Species by Hyperspectral Imagery in Agrocenoses Ecosystem. REMOTE SENSING 2022. [DOI: 10.3390/rs14102442] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
The present study aimed to investigate the possibility of using hyperspectral imaging data to identify the invasive and weed species in agrocenoses ecosystem. The most common weeds in grain agrocenoses, i.e., Ambrosia artemisiifolia L., Euphorbia seguieriana Neck., Atriplex tatarica L., Glycyrrhiza glabra L., Setaria pumila (Poir.) Roem. and Schult, served as objects. The population of weeds, especially Ambrosia artemisiifolia is invasive for the selected region of study. Therefore, the shooting of objects was carried out with a hyperspectral camera, Cubert UHD185, and the values of 100 spectral channels were obtained from hyperspectral images. The values of 80 vegetation indices (VIs) were calculated. The material was processed using mathematical statistics (analysis of variance, t-test) and search methods of data analysis (principal component analysis, decision tree, and random forest). Using statistical methods, the simultaneous use of several VIs differentiated between species more deliberately and precisely. The combination of VIs Derivative index (D1), Chlorophyll content index (Datt3), and Pigment specific normalized difference (PSND) can be used for weeds identification. Using the decision tree method, VIs established a good division of weeds into groups; (1) perennial rhizomatous weeds (Euphorbia seguieriana, and Glycyrrhiza glabra), and (2) annual weeds (A. artemisiifolia, A. tatarica, and S. pumila); These Vis are Chlorophyll index (CI), D1, and Datt3. Using the random forest method, the VIs that have the greatest impact on Mean Decrease Accuracy and Mean Decrease Gini are D1, Datt3, PSND, and Double Peak Index (DPI). The use of spectral channel values for the identification of plant species using the principal component analysis, decision tree, and random forest methods showed worse results than when using VIs. A great similarity of the results was obtained with the help of statistical and search methods of data analysis.
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Detection of Invasive Black Locust (Robinia pseudoacacia) in Small Woody Features Using Spatiotemporal Compositing of Sentinel-2 Data. REMOTE SENSING 2022. [DOI: 10.3390/rs14040971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Recognition of invasive species and their distribution is key for managing and protecting native species within both natural and man-made ecosystems. Small woody features (SWF) represent fragmented patches or narrow linear tree features that are of high importance in intensively utilized agricultural landscapes. Simultaneously, they frequently serve as expansion pathways for invasive species such as black locust. In this study, Sentinel-2 products, combined with spatiotemporal compositing approaches, are used to address the challenge of broad area black locust mapping at a high granularity. This is accomplished by conducting a comprehensive analysis of the classification performance of various compositing approaches and multitemporal classification settings throughout four vegetation seasons. The annual, seasonal (bi-monthly), and monthly median values of cloud-masked Sentinel-2 reflectance products are aggregated and stacked into varied time-series datasets per given year. The random forest algorithm is trained and output classification maps validated based on field-based reference datasets across Danubian lowlands (Slovakia). The main results of the study proved the usefulness of spatiotemporal compositing of Sentinel-2 products for mapping black locust in small woody features across wide area. In particular, temporally aggregated monthly composites stacked to seasonal time series datasets yielded consistently high overall accuracies ranging from 89.10% to 91.47% with balanced producer’s and user’s accuracies for each year’s annual series. We presume that a similar approach could be used for a broader scale species distribution mapping, assuming they are spectrally or phenologically distinctive, as is often the case for many invasive species.
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Gallmann J, Schüpbach B, Jacot K, Albrecht M, Winizki J, Kirchgessner N, Aasen H. Flower Mapping in Grasslands With Drones and Deep Learning. FRONTIERS IN PLANT SCIENCE 2022; 12:774965. [PMID: 35222449 PMCID: PMC8864122 DOI: 10.3389/fpls.2021.774965] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 12/20/2021] [Indexed: 06/14/2023]
Abstract
Manual assessment of flower abundance of different flowering plant species in grasslands is a time-consuming process. We present an automated approach to determine the flower abundance in grasslands from drone-based aerial images by using deep learning (Faster R-CNN) object detection approach, which was trained and evaluated on data from five flights at two sites. Our deep learning network was able to identify and classify individual flowers. The novel method allowed generating spatially explicit maps of flower abundance that met or exceeded the accuracy of the manual-count-data extrapolation method while being less labor intensive. The results were very good for some types of flowers, with precision and recall being close to or higher than 90%. Other flowers were detected poorly due to reasons such as lack of enough training data, appearance changes due to phenology, or flowers being too small to be reliably distinguishable on the aerial images. The method was able to give precise estimates of the abundance of many flowering plant species. In the future, the collection of more training data will allow better predictions for the flowers that are not well predicted yet. The developed pipeline can be applied to any sort of aerial object detection problem.
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Affiliation(s)
| | - Beatrice Schüpbach
- Agricultural Landscape and Biodiversity Group, Agroscope, Zurich, Switzerland
| | - Katja Jacot
- Agricultural Landscape and Biodiversity Group, Agroscope, Zurich, Switzerland
| | - Matthias Albrecht
- Agricultural Landscape and Biodiversity Group, Agroscope, Zurich, Switzerland
| | - Jonas Winizki
- Agricultural Landscape and Biodiversity Group, Agroscope, Zurich, Switzerland
| | | | - Helge Aasen
- Department of Agricultural Science, ETH Zürich, Zurich, Switzerland
- Remote Sensing Team, Division Agroecology and Environment, Agroscope, Zurich, Switzerland
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The Use of an Unmanned Aerial Vehicle for Tree Phenotyping Studies. SEPARATIONS 2021. [DOI: 10.3390/separations8090160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
A strip of 20th-century landscape woodland planted alongside a 17th to mid-18th century ancient and semi-natural woodland (ASNW) was investigated by applied aerial spectroscopy using an unmanned aerial vehicle (UAV) with a multispectral image camera (MSI). A simple classification approach of normalized difference spectral index (NDSI), derived using principal component analysis (PCA), enabled the identification of the non-native trees within the 20th-century boundary. The tree species within this boundary, classified by NDSI, were further segmented by the machine learning segmentation method of k-means clustering. This combined innovative approach has enabled the identification of multiple tree species in the 20th-century boundary. Phenotyping of trees at canopy level using the UAV with MSI, across 8052 m2, identified black pine (23%), Norway maple (19%), Scots pine (12%), and sycamore (19%) as well as native trees (oak and silver birch, 27%). This derived data was corroborated by field identification at ground-level, over an area of 6785 m2, that confirmed the presence of black pine (26%), Norway maple (30%), Scots pine (10%), and sycamore (14%) as well as other trees (oak and silver birch, 20%). The benefits of using a UAV, with an MSI camera, for monitoring tree boundaries next to a new housing development are demonstrated.
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Unmanned Aerial Vehicle (UAV)-Based Mapping of Acacia saligna Invasion in the Mediterranean Coast. REMOTE SENSING 2021. [DOI: 10.3390/rs13173361] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Remote Sensing (RS) is a useful tool for detecting and mapping Invasive Alien Plants (IAPs). IAPs mapping on dynamic and heterogeneous landscapes, using satellite RS data, is not always feasible. Unmanned aerial vehicles (UAV) with ultra-high spatial resolution data represent a promising tool for IAPs detection and mapping. This work develops an operational workflow for detecting and mapping Acacia saligna invasion along Mediterranean coastal dunes. In particular, it explores and tests the potential of RGB (Red, Green, Blue) and multispectral (Green, Red, Red Edge, Near Infra—Red) UAV images collected in pre-flowering and flowering phenological stages for detecting and mapping A. saligna. After ortho—mosaics generation, we derived from RGB images the DSM (Digital Surface Model) and HIS (Hue, Intensity, Saturation) variables, and we calculated the NDVI (Normalized Difference Vegetation Index). For classifying images of the two phenological stages we built a set of raster stacks which include different combination of variables. For image classification, we used the Geographic Object-Based Image Analysis techniques (GEOBIA) in combination with Random Forest (RF) classifier. All classifications derived from RS information (collected on pre-flowering and flowering stages and using different combinations of variables) produced A. saligna maps with acceptable accuracy values, with higher performances on classification derived from flowering period images, especially using DSM + HIS combination. The adopted approach resulted an efficient method for mapping and early detection of IAPs, also in complex environments offering a sound support to the prioritization of conservation and management actions claimed by the EU IAS Regulation 1143/2014.
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Demographic analysis of an Israeli Carpobrotus population. PLoS One 2021; 16:e0250879. [PMID: 33930061 PMCID: PMC8087044 DOI: 10.1371/journal.pone.0250879] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 04/16/2021] [Indexed: 11/19/2022] Open
Abstract
Carpobrotus species are harmful invaders to coastal areas throughout the world, particularly in Mediterranean habitats. Demographic models are ideally suited to identify and understand population processes and stages in the life cycle of the species that could be most effectively targeted with management. However, parameterizing these models has been limited by the difficulty in accessing the cliff-side locations where its populations are typically found, as well as accurately measuring the growth and spread of individuals, which form large, dense mats. This study uses small unmanned aerial vehicles (drones) to collect demographic data and parameterize an Integral Projection Model of an Israeli Carpobrotus population. We validated our data set with ground targets of known size. Through the analysis of asymptotic growth rates and population sensitivities and elasticities, we demonstrate that the population at the study site is demographically stable, and that reducing the survival and growth of the largest individuals would have the greatest effect on reducing overall population growth rate. Our results provide a first evaluation of the demography of Carpobrotus, a species of conservation and economic concern, and provide the first structured population model of a representative of the Aizoaceae family, thus contributing to our global knowledge on plant population dynamics. In addition, we demonstrate the advantages of using drones for collecting demographic data in understudied habitats such as coastal ecosystems.
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Recent Advances in Unmanned Aerial Vehicles Forest Remote Sensing—A Systematic Review. Part II: Research Applications. FORESTS 2021. [DOI: 10.3390/f12040397] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Forest sustainable management aims to maintain the income of woody goods for companies, together with preserving non-productive functions as a benefit for the community. Due to the progress in platforms and sensors and the opening of the dedicated market, unmanned aerial vehicle–remote sensing (UAV–RS) is improving its key role in the forestry sector as a tool for sustainable management. The use of UAV (Unmanned Aerial Vehicle) in precision forestry has exponentially increased in recent years, as demonstrated by more than 600 references published from 2018 until mid-2020 that were found in the Web of Science database by searching for “UAV” + “forest”. This result is even more surprising when compared with similar research for “UAV” + “agriculture”, from which emerge about 470 references. This shows how UAV–RS research forestry is gaining increasing popularity. In Part II of this review, analyzing the main findings of the reviewed papers (227), numerous strengths emerge concerning research technical issues. UAV–RS is fully applicated for obtaining accurate information from practical parameters (height, diameter at breast height (DBH), and biomass). Research effectiveness and soundness demonstrate that UAV–RS is now ready to be applied in a real management context. Some critical issues and barriers in transferring research products are also evident, namely, (1) hyperspectral sensors are poorly used, and their novel applications should be based on the capability of acquiring tree spectral signature especially for pest and diseases detection, (2) automatic processes for image analysis are poorly flexible or based on proprietary software at the expense of flexible and open-source tools that can foster researcher activities and support technology transfer among all forestry stakeholders, and (3) a clear lack exist in sensors and platforms interoperability for large-scale applications and for enabling data interoperability.
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Recent Advances in Unmanned Aerial Vehicle Forest Remote Sensing—A Systematic Review. Part I: A General Framework. FORESTS 2021. [DOI: 10.3390/f12030327] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Natural, semi-natural, and planted forests are a key asset worldwide, providing a broad range of positive externalities. For sustainable forest planning and management, remote sensing (RS) platforms are rapidly going mainstream. In a framework where scientific production is growing exponentially, a systematic analysis of unmanned aerial vehicle (UAV)-based forestry research papers is of paramount importance to understand trends, overlaps and gaps. The present review is organized into two parts (Part I and Part II). Part II inspects specific technical issues regarding the application of UAV-RS in forestry, together with the pros and cons of different UAV solutions and activities where additional effort is needed, such as the technology transfer. Part I systematically analyzes and discusses general aspects of applying UAV in natural, semi-natural and artificial forestry ecosystems in the recent peer-reviewed literature (2018–mid-2020). The specific goals are threefold: (i) create a carefully selected bibliographic dataset that other researchers can draw on for their scientific works; (ii) analyze general and recent trends in RS forest monitoring (iii) reveal gaps in the general research framework where an additional activity is needed. Through double-step filtering of research items found in the Web of Science search engine, the study gathers and analyzes a comprehensive dataset (226 articles). Papers have been categorized into six main topics, and the relevant information has been subsequently extracted. The strong points emerging from this study concern the wide range of topics in the forestry sector and in particular the retrieval of tree inventory parameters often through Digital Aerial Photogrammetry (DAP), RGB sensors, and machine learning techniques. Nevertheless, challenges still exist regarding the promotion of UAV-RS in specific parts of the world, mostly in the tropical and equatorial forests. Much additional research is required for the full exploitation of hyperspectral sensors and for planning long-term monitoring.
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Spatial Variation in Coastal Dune Evolution in a High Tidal Range Environment. REMOTE SENSING 2020. [DOI: 10.3390/rs12223689] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Coastal dunes have global importance as ecological habitats, recreational areas, and vital natural coastal protection. Dunes evolve due to variations in the supply and removal of sediment via both wind and waves, and on stabilization through vegetation colonization and growth. One aspect of dune evolution that is poorly understood is the longshore variation in dune response to morphodynamic forcing, which can occur over small spatial scales. In this paper, a fixed wing unmanned aerial vehicle (UAV), is used to measure the longshore variation in evolution of a dune system in a megatidal environment. Dune sections to the east and west of the study site are prograding whereas the central portion is static or eroding. The measured variation in dune response is compared to mesoscale intertidal bar migration and short-term measurements of longshore variation in wave characteristics during two storms. Intertidal sand bar migration is measured using satellite imagery: crescentic intertidal bars are present in front of the accreting portion of the beach to the west and migrate onshore at a rate of 0.1–0.2 m/day; episodically the eastern end of the bar detaches from the main bar and migrates eastward to attach near the eastern end of the study area; bypassing the central eroding section. Statistically significant longshore variation in intertidal wave heights were measured using beachface mounted pressure transducers: the largest significant wave heights are found in front of the dune section suffering erosion. Spectral differences were noted with more narrow-banded spectra in this area but differences are not statistically significant. These observations demonstrate the importance of three-dimensionality in intertidal beach morphology on longshore variation in dune evolution; both through longshore variation in onshore sediment supply and through causing longshore variation in near-dune significant wave heights.
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James K, Bradshaw K. Detecting plant species in the field with deep learning and drone technology. Methods Ecol Evol 2020. [DOI: 10.1111/2041-210x.13473] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Katherine James
- Department of Computer Science Rhodes University Grahamstown South Africa
| | - Karen Bradshaw
- Department of Computer Science Rhodes University Grahamstown South Africa
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14
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Forestry Remote Sensing from Unmanned Aerial Vehicles: A Review Focusing on the Data, Processing and Potentialities. REMOTE SENSING 2020. [DOI: 10.3390/rs12061046] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Currently, climate change poses a global threat, which may compromise the sustainability of agriculture, forestry and other land surface systems. In a changing world scenario, the economic importance of Remote Sensing (RS) to monitor forests and agricultural resources is imperative to the development of agroforestry systems. Traditional RS technologies encompass satellite and manned aircraft platforms. These platforms are continuously improving in terms of spatial, spectral, and temporal resolutions. The high spatial and temporal resolutions, flexibility and lower operational costs make Unmanned Aerial Vehicles (UAVs) a good alternative to traditional RS platforms. In the management process of forests resources, UAVs are one of the most suitable options to consider, mainly due to: (1) low operational costs and high-intensity data collection; (2) its capacity to host a wide range of sensors that could be adapted to be task-oriented; (3) its ability to plan data acquisition campaigns, avoiding inadequate weather conditions and providing data availability on-demand; and (4) the possibility to be used in real-time operations. This review aims to present the most significant UAV applications in forestry, identifying the appropriate sensors to be used in each situation as well as the data processing techniques commonly implemented.
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15
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López-Granados F, Torres-Sánchez J, Jiménez-Brenes FM, Arquero O, Lovera M, de Castro AI. An efficient RGB-UAV-based platform for field almond tree phenotyping: 3-D architecture and flowering traits. PLANT METHODS 2019; 15:160. [PMID: 31889984 PMCID: PMC6931260 DOI: 10.1186/s13007-019-0547-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 12/11/2019] [Indexed: 05/23/2023]
Abstract
BACKGROUND Almond is an emerging crop due to the health benefits of almond consumption including nutritional, anti-inflammatory, and hypocholesterolaemia properties. Traditional almond producers were concentrated in California, Australia, and Mediterranean countries. However, almond is currently present in more than 50 countries due to breeding programs have modernized almond orchards by developing new varieties with improved traits related to late flowering (to reduce the risk of damage caused by late frosts) and tree architecture. Almond tree architecture and flowering are acquired and evaluated through intensive field labour for breeders. Flowering detection has traditionally been a very challenging objective. To our knowledge, there is no published information about monitoring of the tree flowering dynamics of a crop at the field scale by using color information from photogrammetric 3D point clouds and OBIA. As an alternative, a procedure based on the generation of colored photogrammetric point clouds using a low cost (RGB) camera on-board an unmanned aerial vehicle (UAV), and an semi-automatic object based image analysis (OBIA) algorithm was created for monitoring the flower density and flowering period of every almond tree in the framework of two almond phenotypic trials with different planting dates. RESULTS Our method was useful for detecting the phenotypic variability of every almond variety by mapping and quantifying every tree height and volume as well as the flowering dynamics and flower density. There was a high level of agreement among the tree height, flower density, and blooming calendar derived from our procedure on both fields with the ones created from on-ground measured data. Some of the almond varieties showed a significant linear fit between its crown volume and their yield. CONCLUSIONS Our findings could help breeders and researchers to reduce the gap between phenomics and genomics by generating accurate almond tree information in an efficient, non-destructive, and inexpensive way. The method described is also useful for data mining to select the most promising accessions, making it possible to assess specific multi-criteria ranking varieties, which are one of the main tools for breeders.
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Affiliation(s)
| | | | | | - Octavio Arquero
- Institute of Agricultural Research and Training (IFAPA-Alameda del Obispo), 14004 Córdoba, Spain
| | - María Lovera
- Institute of Agricultural Research and Training (IFAPA-Alameda del Obispo), 14004 Córdoba, Spain
| | - Ana I. de Castro
- Institute for Sustainable Agriculture IAS-CSIC, 14004 Córdoba, Spain
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Dash JP, Watt MS, Paul TSH, Morgenroth J, Hartley R. Taking a closer look at invasive alien plant research: A review of the current state, opportunities, and future directions for UAVs. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13296] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Jonathan P. Dash
- Scion Rotorua New Zealand
- School of Forestry University of Canterbury Christchurch New Zealand
| | | | | | - Justin Morgenroth
- School of Forestry University of Canterbury Christchurch New Zealand
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Early Detection of Invasive Exotic Trees Using UAV and Manned Aircraft Multispectral and LiDAR Data. REMOTE SENSING 2019. [DOI: 10.3390/rs11151812] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Exotic conifers can provide significant ecosystem services, but in some environments, they have become invasive and threaten indigenous ecosystems. In New Zealand, this phenomenon is of considerable concern as the area occupied by invasive exotic trees is large and increasing rapidly. Remote sensing methods offer a potential means of identifying and monitoring land infested by these trees, enabling managers to efficiently allocate resources for their control. In this study, we sought to develop methods for remote detection of exotic invasive trees, namely Pinus sylvestris and P. ponderosa. Critically, the study aimed to detect these species prior to the onset of maturity and coning as this is important for preventing further spread. In the study environment in New Zealand’s South Island, these species reach maturity and begin bearing cones at a young age. As such, detection of these smaller individuals requires specialist methods and very high-resolution remote sensing data. We examined the efficacy of classifiers developed using two machine learning algorithms with multispectral and laser scanning data collected from two platforms—manned aircraft and unmanned aerial vehicles (UAV). The study focused on a localized conifer invasion originating from a multi-species pine shelter belt in a grassland environment. This environment provided a useful means of defining the detection thresholds of the methods and technologies employed. An extensive field dataset including over 17,000 trees (height range = 1 cm to 476 cm) was used as an independent validation dataset for the detection methods developed. We found that data from both platforms and using both logistic regression and random forests for classification provided highly accurate (kappa < 0.996 ) detection of invasive conifers. Our analysis showed that the data from both UAV and manned aircraft was useful for detecting trees down to 1 m in height and therefore shorter than 99.3% of the coning individuals in the study dataset. We also explored the relative contribution of both multispectral and airborne laser scanning (ALS) data in the detection of invasive trees through fitting classification models with different combinations of predictors and found that the most useful models included data from both sensors. However, the combination of ALS and multispectral data did not significantly improve classification accuracy. We believe that this was due to the simplistic vegetation and terrain structure in the study site that resulted in uncomplicated separability of invasive conifers from other vegetation. This study provides valuable new knowledge of the efficacy of detecting invasive conifers prior to the onset of coning using high-resolution data from UAV and manned aircraft. This will be an important tool in managing the spread of these important invasive plants.
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Abstract
Imaging spectroscopy is a promising tool for airborne tree species recognition in hyper-diverse tropical canopies. However, its widespread application is limited by the signal sensitivity to acquisition parameters, which may require new training data in every new area of application. This study explores how various pre-processing steps may improve species discrimination and species recognition under different operational settings. In the first experiment, a classifier was trained and applied on imaging spectroscopy data acquired on a single date, while in a second experiment, the classifier was trained on data from one date and applied to species identification on data from a different date. A radiative transfer model based on atmospheric compensation was applied with special focus on the automatic retrieval of aerosol amounts. The impact of spatial or spectral filtering and normalisation was explored as an alternative to atmospheric correction. A pixel-wise classification was performed with a linear discriminant analysis trained on individual tree crowns identified at the species level. Tree species were then identified at the crown scale based on a majority vote rule. Atmospheric corrections did not outperform simple statistical processing (i.e., filtering and normalisation) when training and testing sets were taken from the same flight date. However, atmospheric corrections became necessary for reliable species recognition when different dates were considered. Shadow masking improved species classification results in all cases. Single date classification rate was 83.9% for 1297 crowns of 20 tropical species. The loss of mean accuracy observed when using training data from one date to identify species at another date in the same area was limited to 10% when atmospheric correction was applied.
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19
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Can citizen science data guide the surveillance of invasive plants? A model-based test with Acacia trees in Portugal. Biol Invasions 2019. [DOI: 10.1007/s10530-019-01962-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Robinia pseudoacacia L. in Short Rotation Coppice: Seed and Stump Shoot Reproduction as well as UAS-based Spreading Analysis. FORESTS 2019. [DOI: 10.3390/f10030235] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Varying reproduction strategies are an important trait that tree species need in order both to survive and to spread. Black locust is able to reproduce via seeds, stump shoots, and root suckers. However, little research has been conducted on the reproduction and spreading of black locust in short rotation coppices. This research study focused on seed germination, stump shoot resprout, and spreading by root suckering of black locust in ten short rotation coppices in Germany. Seed experiments and sample plots were analyzed for the study. Spreading was detected and measured with unmanned aerial system (UAS)-based images and classification technology—object-based image analysis (OBIA). Additionally, the classification of single UAS images was tested by applying a convolutional neural network (CNN), a deep learning model. The analyses showed that seed germination increases with increasing warm-cold variety and scarification. Moreover, it was found that the number of shoots per stump decreases as shoot age increases. Furthermore, spreading increases with greater light availability and decreasing tillage. The OBIA and CNN image analysis technologies achieved 97% and 99.5% accuracy for black locust classification in UAS images. All in all, the three reproduction strategies of black locust in short rotation coppices differ with regards to initialization, intensity, and growth performance, but all play a role in the survival and spreading of black locust.
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