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Farkas E, Dóra Kovács K, Szekacs I, Peter B, Lagzi I, Kitahata H, Suematsu NJ, Horvath R. Kinetic monitoring of molecular interactions during surfactant-driven self-propelled droplet motion by high spatial resolution waveguide sensing. J Colloid Interface Sci 2025; 677:352-364. [PMID: 39151228 DOI: 10.1016/j.jcis.2024.07.236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 07/29/2024] [Accepted: 07/30/2024] [Indexed: 08/19/2024]
Abstract
HYPOTHESIS Self-driven actions, like motion, are fundamental characteristics of life. Today, intense research focuses on the kinetics of droplet motion. Quantifying macroscopic motion and exploring the underlying mechanisms are crucial in self-structuring and self-healing materials, advancements in soft robotics, innovations in self-cleaning environmental processes, and progress within the pharmaceutical industry. Usually, the driving forces inducing macroscopic motion act at the molecular scale, making their real-time and high-resolution investigation challenging. Label-free surface sensitive measurements with high lateral resolution could in situ measure both molecular-scale interactions and microscopic motion. EXPERIMENTS We employ surface-sensitive label-free sensors to investigate the kinetic changes in a self-assembled monolayer of the trimethyl(octadecyl)azanium chloride surfactant on a substrate surface during the self-propelled motion of nitrobenzene droplets. The adsorption-desorption of the surfactant at various concentrations, its removal due to the moving organic droplet, and rebuilding mechanisms at droplet-visited areas are all investigated with excellent time, spatial, and surface mass density resolution. FINDINGS We discovered concentration dependent velocity fluctuations, estimated the adsorbed amount of surfactant molecules, and revealed multilayer coverage at high concentrations. The desorption rate of surfactant (18.4 s-1) during the microscopic motion of oil droplets was determined by in situ differentiating between droplet visited and non-visited areas.
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Affiliation(s)
- Eniko Farkas
- Nanobiosensorics Laboratory, Institute of Technical Physics and Materials Science, HUN-REN Centre for Energy Research, 1121 Budapest, Hungary
| | - Kinga Dóra Kovács
- Nanobiosensorics Laboratory, Institute of Technical Physics and Materials Science, HUN-REN Centre for Energy Research, 1121 Budapest, Hungary; Department of Biological Physics, Eötvös Loránd University, 1117 Budapest, Hungary
| | - Inna Szekacs
- Nanobiosensorics Laboratory, Institute of Technical Physics and Materials Science, HUN-REN Centre for Energy Research, 1121 Budapest, Hungary
| | - Beatrix Peter
- Nanobiosensorics Laboratory, Institute of Technical Physics and Materials Science, HUN-REN Centre for Energy Research, 1121 Budapest, Hungary
| | - István Lagzi
- Department of Physics, Institute of Physics, Budapest University of Technology and Economics, Muegyetem rkp. 3, 1111 Budapest, Hungary; HUN-REN-BME Condensed Matter Physics Research Group, Budapest University of Technology and Economics, Muegyetem rkp. 3, 1111 Budapest, Hungary
| | - Hiroyuki Kitahata
- Graduate School of Science, Chiba University, Yayoi-cho 1-33, Inage-ku, Chiba 263-8522, Japan
| | - Nobuhiko J Suematsu
- Meiji Institute of Advanced Study of Mathematical Sciences (MIMS), Meiji University, 4-21-1 Nakano, Tokyo 164-8525, Japan; Graduate School of Advanced Mathematical Sciences, Meiji University, 4-21-1 Nakano, Tokyo 164-8525, Japan.
| | - Robert Horvath
- Nanobiosensorics Laboratory, Institute of Technical Physics and Materials Science, HUN-REN Centre for Energy Research, 1121 Budapest, Hungary; Nanobiosensorics Laboratory, Institute of Biophysics, HUN-REN Biological Research Centre, Szeged, Hungary.
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2
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Zhou S, Jia Y, Fang H, Jin C, Mo Y, Xiao Z, Zhang N, Sun L, Lu H. A new understanding on the prerequisite of antibiotic biodegradation in wastewater treatment: Adhesive behavior between antibiotic-degrading bacteria and ciprofloxacin. WATER RESEARCH 2024; 252:121226. [PMID: 38309071 DOI: 10.1016/j.watres.2024.121226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 12/10/2023] [Accepted: 01/28/2024] [Indexed: 02/05/2024]
Abstract
The extensive exploration of antibiotic biodegradation by antibiotic-degrading bacteria in biological wastewater treatment processes has left a notable gap in understanding the behavior of these bacteria when exposed to antibiotics and the initiation of biodegradation processes. This study, therefore, delves into the adhesive behavior of Paraclostridium bifermentans, isolated from a bioreactor treating ciprofloxacin-laden wastewater, towards ciprofloxacin molecules. For the first time, this behavior is observed and characterized through quartz crystal microbalance with dissipation (QCM-D) and atomic force microscopy. The investigation further extends to identify key regulatory factors and mechanisms governing this adhesive behavior through a comparative proteomics analysis. The results reveal the dominance of extracellular proteins, particularly those involved in nucleotide binding, hydrolase, and transferase, in the adhesion process. These proteins play pivotal roles through direct chemical binding and the regulation of signaling molecule. Furthermore, QCM-D measurements provide evidence that transferase-related signaling molecules, especially tyrosine, augment the binding between ciprofloxacin and transferases, resulting in enhance ciprofloxacin removal by P. bifermentans (increased by ∼1.2-fold). This suggests a role for transferase-related signaling molecules in manipulating the adhesive behavior of P. bifermentans towards ciprofloxacin. These findings contribute to a new understanding of the prerequisites for antibiotic biodegradation and offer potential strategies for improving the application of antibiotic-degrading bacteria in the treatment of antibiotics-laden wastewater.
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Affiliation(s)
- Sining Zhou
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Yanyan Jia
- School of Ecology, Sun Yat-sen University, Shenzhen, PR China
| | - Heting Fang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Chao Jin
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Yijun Mo
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Zihan Xiao
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Ning Zhang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Lianpeng Sun
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China
| | - Hui Lu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology (Sun Yat-sen University), Guangzhou, PR China.
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3
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Sigel R. Light propagation in layered media in a total reflection geometry: a transfer matrix method using virtually linear basis functions to handle critical conditions. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2022; 39:2142-2152. [PMID: 36520729 DOI: 10.1364/josaa.472361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 10/11/2022] [Indexed: 06/17/2023]
Abstract
For light propagation in a layered refractive index profile, critical conditions occur when the wave vector perpendicular to the layering becomes zero. Such conditions can occur in a total reflection geometry. Conventional transfer matrix methods become singular, and geometrical optics concepts break down at critical conditions. We introduce two new, to the best of our knowledge, basis systems using virtual linear functions that obey the Helmholtz equation and turn to linear functions required for critical conditions.
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4
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Biswas S, Melton LD, Nelson ARJ, Le Brun AP, Heinrich F, McGillivray DJ, Xu AY. The Assembly Mechanism and Mesoscale Architecture of Protein-Polysaccharide Complexes Formed at the Solid-liquid Interface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:12551-12561. [PMID: 36194692 DOI: 10.1021/acs.langmuir.2c02003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Protein-polysaccharide composite materials have generated much interest due to their potential use in medical science and biotechnology. A comprehensive understanding of the assembly mechanism and the mesoscale architecture is needed for fabricating protein-polysaccharide composite materials with desired properties. In this study, complex assemblies were built on silica surfaces through a layer-by-layer (LbL) approach using bovine beta-lactoglobulin variant A (βLgA) and pectin as model protein and polysaccharide, respectively. We demonstrated the combined use of quartz crystal microbalance with dissipation monitoring (QCM-D) and neutron reflectometry (NR) for elucidating the assembly mechanism as well as the internal architecture of the protein-polysaccharide complexes formed at the solid-liquid interface. Our results show that βLgA and pectin interacted with each other and formed a cohesive matrix structure at the interface consisting of intertwined pectin chains that were cross-linked by βLgA-rich domains. Although the complexes were fabricated in an LbL fashion, the complexes appeared to be relatively homogeneous with βLgA and pectin molecules spatially distributed within the matrix structure. Our results also demonstrate that the density of βLgA-pectin complex assemblies increased with both the overall and local charge density of pectin molecules. Therefore, the physical properties of the protein-polysaccharide matrix structure, including density and level of hydration, can be tuned by using polysaccharides with varying charge patterns, thus promoting the development of composite materials with desired properties.
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Affiliation(s)
- Shanta Biswas
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana70803, United States
| | - Laurence D Melton
- School of Chemical Sciences, The University of Auckland, Private Bag 92019, Auckland1142, New Zealand
| | - Andrew R J Nelson
- Australian Centre for Neutron Scattering, ANSTO, Locked Bag 2001, Kirrawee DC, New South Wales2232, Australia
| | - Anton P Le Brun
- Australian Centre for Neutron Scattering, ANSTO, Locked Bag 2001, Kirrawee DC, New South Wales2232, Australia
| | - Frank Heinrich
- Department of Physics, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, Pennsylvania15213, United States
- NIST Center for Neutron Research, National Institute of Standards and Technology, 100 Bureau Drive, Mail Stop 6102, Gaithersburg, Maryland20899, United States
| | - Duncan J McGillivray
- School of Chemical Sciences, The University of Auckland, Private Bag 92019, Auckland1142, New Zealand
| | - Amy Y Xu
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana70803, United States
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Fundamentals of Biosensors and Detection Methods. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2022; 1379:3-29. [PMID: 35760986 DOI: 10.1007/978-3-031-04039-9_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
Biosensors have a great impact on our society to enhance the life quality, playing an important role in the development of Point-of-Care (POC) technologies for rapid diagnostics, and monitoring of disease progression. COVID-19 rapid antigen tests, home pregnancy tests, and glucose monitoring sensors represent three examples of successful biosensor POC devices. Biosensors have extensively been used in applications related to the control of diseases, food quality and safety, and environment quality. They can provide great specificity and portability at significantly reduced costs. In this chapter are described the fundamentals of biosensors including the working principles, general configurations, performance factors, and their classifications according to the type of bioreceptors and transducers. It is also briefly illustrated the general strategies applied to immobilize biorecognition elements on the transducer surface for the construction of biosensors. Moreover, the principal detection methods used in biosensors are described, giving special emphasis on optical, electrochemical, and mass-based methods. Finally, the challenges for biosensing in real applications are addressed at the end of this chapter.
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6
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Sharafeldin M, Davis JJ. Characterising the biosensing interface. Anal Chim Acta 2022; 1216:339759. [DOI: 10.1016/j.aca.2022.339759] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 02/08/2022] [Accepted: 03/22/2022] [Indexed: 12/19/2022]
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7
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Saftics A, Kurunczi S, Peter B, Szekacs I, Ramsden JJ, Horvath R. Data evaluation for surface-sensitive label-free methods to obtain real-time kinetic and structural information of thin films: A practical review with related software packages. Adv Colloid Interface Sci 2021; 294:102431. [PMID: 34330074 DOI: 10.1016/j.cis.2021.102431] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 04/16/2021] [Accepted: 04/18/2021] [Indexed: 02/07/2023]
Abstract
Interfacial layers are important in a wide range of applications in biomedicine, biosensing, analytical chemistry and the maritime industries. Given the growing number of applications, analysis of such layers and understanding their behavior is becoming crucial. Label-free surface sensitive methods are excellent for monitoring the formation kinetics, structure and its evolution of thin layers, even at the nanoscale. In this paper, we review existing and commercially available label-free techniques and demonstrate how the experimentally obtained data can be utilized to extract kinetic and structural information during and after formation, and any subsequent adsorption/desorption processes. We outline techniques, some traditional and some novel, based on the principles of optical and mechanical transduction. Our special focus is the current possibilities of combining label-free methods, which is a powerful approach to extend the range of detected and deduced parameters. We summarize the most important theoretical considerations for obtaining reliable information from measurements taking place in liquid environments and, hence, with layers in a hydrated state. A thorough treamtmaent of the various kinetic and structural quantities obtained from evaluation of the raw label-free data are provided. Such quantities include layer thickness, refractive index, optical anisotropy (and molecular orientation derived therefrom), degree of hydration, viscoelasticity, as well as association and dissociation rate constants and occupied area of subsequently adsorbed species. To demonstrate the effect of variations in model conditions on the observed data, simulations of kinetic curves at various model settings are also included. Based on our own extensive experience with optical waveguide lightmode spectroscopy (OWLS) and the quartz crystal microbalance (QCM), we have developed dedicated software packages for data analysis, which are made available to the scientific community alongside this paper.
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8
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Abstract
Precise characterization of a monolayer of two different biomolecules in a gradient pattern on a glass surface puts high demand on the method used. Some techniques can detect protein monolayers but not on a glass surface. Others can distinguish between different proteins but not identify a gradient pattern. Here, we used ToF-SIMS to validate the complete surface composition, checking all the necessary boxes. As these types of surfaces can dictate sensitive cell behaviors, the precision on a nanolevel is crucial, and to visualize and determine the molecular distribution become essential. The dual monolayer consisted of laminin 521 and one of three other biomolecules of different sizes, epidermal growth factor, growth differentiation factor 5, or bovine serum albumin, creating opposing gradient patterns. The resulting ToF-SIMS imaging and line scan data provided detailed information on the distribution of the adsorbed proteins.
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9
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Samarentsis AG, Pantazis AK, Tsortos A, Friedt JM, Gizeli E. Hybrid Sensor Device for Simultaneous Surface Plasmon Resonance and Surface Acoustic Wave Measurements. SENSORS 2020; 20:s20216177. [PMID: 33138312 PMCID: PMC7662402 DOI: 10.3390/s20216177] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 10/23/2020] [Accepted: 10/26/2020] [Indexed: 11/19/2022]
Abstract
Surface plasmon resonance (SPR) and Love wave (LW) surface acoustic wave (SAW) sensors have been established as reliable biosensing technologies for label-free, real-time monitoring of biomolecular interactions. This work reports the development of a combined SPR/LW-SAW platform to facilitate simultaneous optical and acoustic measurements for the investigation of biomolecules binding on a single surface. The system’s output provides recordings of two acoustic parameters, phase and amplitude of a Love wave, synchronized with SPR readings. We present the design and manufacturing of a novel experimental set-up employing, in addition to the SPR/LW-SAW device, a 3D-printed plastic holder combined with a PDMS microfluidic cell so that the platform can be used in a flow-through mode. The system was evaluated in a systematic study of the optical and acoustic responses for different surface perturbations, i.e., rigid mass loading (Au deposition), pure viscous loading (glycerol and sucrose solutions) and protein adsorption (BSA). Our results provide the theoretical and experimental basis for future application of the combined system to other biochemical and biophysical studies.
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Affiliation(s)
- Anastasios G. Samarentsis
- Institute of Molecular Biology & Biotechnology, FO.R.T.H, Vassilika Vouton, 70013 Heraklion, Greece; (A.G.S.); (A.T.)
- Department of Biology, University of Crete, Vassilika Vouton, 71409 Heraklion, Greece;
| | - Alexandros K. Pantazis
- Department of Biology, University of Crete, Vassilika Vouton, 71409 Heraklion, Greece;
- Institute of Electronic Structure & Laser, FO.R.T.H, Vassilika Vouton, 71409 Heraklion, Greece
| | - Achilleas Tsortos
- Institute of Molecular Biology & Biotechnology, FO.R.T.H, Vassilika Vouton, 70013 Heraklion, Greece; (A.G.S.); (A.T.)
| | - Jean-Michel Friedt
- SENSeOR SAS, Time and Frequency Department, FEMTO-ST Institute, 15B Avenue des Montboucons, 25030 Besançon, France;
| | - Electra Gizeli
- Institute of Molecular Biology & Biotechnology, FO.R.T.H, Vassilika Vouton, 70013 Heraklion, Greece; (A.G.S.); (A.T.)
- Department of Biology, University of Crete, Vassilika Vouton, 71409 Heraklion, Greece;
- Correspondence: ; Tel.: +30-2810-394373
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10
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Zornjak J, Liu J, Esker A, Lin T, Fernández-Fraguas C. Bulk and interfacial interactions between hydroxypropyl-cellulose and bile salts: Impact on the digestion of emulsified lipids. Food Hydrocoll 2020. [DOI: 10.1016/j.foodhyd.2020.105867] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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11
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Lateral field excited quartz crystal microbalances for biosensing applications. Biointerphases 2020; 15:030801. [PMID: 32486650 DOI: 10.1116/6.0000144] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The most common bulk acoustic wave device used in biosensing applications is the quartz crystal microbalance (QCM), in which a resonant pure shear acoustic wave is excited via electrodes on both major faces of a thin AT-cut quartz plate. For biosensing, the QCM is used to detect the capture of a target by a target-capture film. The sensitivity of the QCM is typically based solely on the detection of mechanical property changes, as electrical property change detection is limited by the electrode on its sensing surface. A modification of the QCM called the lateral field excited (LFE) QCM (LFE-QCM) has been developed with a bare sensing surface as both electrodes are now on a single face of the quartz plate. Compared to the QCM, the LFE-QCM exhibits significantly higher sensitivity to both electrical and mechanical property changes. This paper presents theoretical and experimental aspects of LFE-QCMs. In particular, the presence and strength of the usual and newfound LFE-QCM modes depend on the electrical properties of the film and/or sensing environment. This work also presents examples of experimental setups for measuring the response of an LFE-QCM, followed by results of LFE-QCMs used to detect liquid electrical and mechanical properties, chemical targets, and biological targets. Finally, details are given about the attachment of various target-capture films to the LFE-QCM surface to capture biomarkers associated with diseases such as cancer.
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12
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Colorimetric determination of total protein content in serum based on the polydopamine/protein adsorption competition on microplates. Talanta 2019; 198:15-22. [DOI: 10.1016/j.talanta.2019.01.095] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 01/23/2019] [Accepted: 01/25/2019] [Indexed: 11/23/2022]
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13
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Isozaki K, Shimoaka T, Oshiro S, Yamaguchi A, Pincella F, Ueno R, Hasegawa T, Watanabe T, Takaya H, Nakamura M. Robust Surface Plasmon Resonance Chips for Repetitive and Accurate Analysis of Lignin-Peptide Interactions. ACS OMEGA 2018; 3:7483-7493. [PMID: 31458905 PMCID: PMC6644341 DOI: 10.1021/acsomega.8b01161] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Accepted: 06/22/2018] [Indexed: 05/30/2023]
Abstract
We have developed novel surface plasmon resonance (SPR) sensor chips whose surfaces bear newly synthesized functional self-assembled monolayer (SAM) anchoring lignin through covalent chemical bonds. The SPR sensor chips are remarkably robust and suitable for repetitive and accurate measurement of noncovalent lignin-peptide interactions, which is of significant interest in the chemical or biochemical conversion of renewable woody biomass to valuable chemical feedstocks. The lignin-anchored SAMs were prepared for the first time by click chemistry based on an azide-alkyne Huisgen cycloaddition: mixed SAMs are fabricated on gold thin film using a mixture of alkynyl and methyl thioalkyloligo(ethylene oxide) disulfides and then reacted with azidated milled wood lignins to furnish the functional SAMs anchoring lignins covalently. The resulting SAMs were characterized using infrared reflection-absorption, Raman, and X-ray photoelectron spectroscopies to confirm covalent immobilization of the lignins to the SAMs via triazole linkages and also to reveal that the SAM formation induces a helical conformation of the ethylene oxide chains. Further, SPR measurements of the noncovalent lignin-peptide interactions using lignin-binding peptides have demonstrated high reproducibility and durability of the prepared lignin-anchored sensor chips.
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Affiliation(s)
- Katsuhiro Isozaki
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
- Department
of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Takafumi Shimoaka
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
| | - Satoshi Oshiro
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
| | - Asako Yamaguchi
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
| | - Francesca Pincella
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
- CREST,
Japan Science and Technology Agency (JST), 4-1-8 Honcho Kawaguchi, Saitama 332-0012, Japan
| | - Ryo Ueno
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
- Department
of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Takeshi Hasegawa
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
| | - Takashi Watanabe
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
- CREST,
Japan Science and Technology Agency (JST), 4-1-8 Honcho Kawaguchi, Saitama 332-0012, Japan
| | - Hikaru Takaya
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
- Department
of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Masaharu Nakamura
- International
Research Center for Elements Science, Institute for
Chemical Research, Division of Environmental Chemistry, Institute for Chemical Research, and Research Institute
for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Kyoto, Japan
- Department
of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
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14
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Parkkila P, Elderdfi M, Bunker A, Viitala T. Biophysical Characterization of Supported Lipid Bilayers Using Parallel Dual-Wavelength Surface Plasmon Resonance and Quartz Crystal Microbalance Measurements. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:8081-8091. [PMID: 29894192 PMCID: PMC6203186 DOI: 10.1021/acs.langmuir.8b01259] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Revised: 05/29/2018] [Indexed: 05/30/2023]
Abstract
Supported lipid bilayers (SLBs) have been used extensively as an effective model of biological membranes, in the context of in vitro biophysics research, and the membranes of liposomes, in the context of the development of nanoscale drug delivery devices. Despite numerous surface-sensitive techniques having been applied to their study, the comprehensive optical characterization of SLBs using surface plasmon resonance (SPR) has not been conducted. In this study, Fresnel multilayer analysis is utilized to effectively calculate layer parameters (thickness and refractive indices) with the aid of dual-wavelength and dispersion coefficient analysis, in which the linear change in the refractive index as a function of wavelength is assumed. Using complementary information from impedance-based quartz crystal microbalance experiments, biophysical properties, for example, area-per-lipid-molecule and the quantity of lipid-associated water molecules, are calculated for different lipid types and mixtures, one of which is representative of a raft-forming lipid mixture. It is proposed that the hydration layer beneath the bilayer is, in fact, an integral part of the measured optical signal. Also, the traditional Jung model analysis and the ratio of SPR responses are investigated in terms of assessing the structure of the lipid layer that is formed.
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Affiliation(s)
- Petteri Parkkila
- Drug
Research Program, Division of Pharmaceutical Biosciences, Faculty
of Pharmacy, University of Helsinki, 00014 Helsinki, Finland
| | - Mohamed Elderdfi
- Department
of Cytobiochemistry, Faculty of Biotechnology, University of Wrocław, 50-383 Wrocław, Poland
| | - Alex Bunker
- Drug
Research Program, Division of Pharmaceutical Biosciences, Faculty
of Pharmacy, University of Helsinki, 00014 Helsinki, Finland
| | - Tapani Viitala
- Drug
Research Program, Division of Pharmaceutical Biosciences, Faculty
of Pharmacy, University of Helsinki, 00014 Helsinki, Finland
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15
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Lee TH, Hirst DJ, Kulkarni K, Del Borgo MP, Aguilar MI. Exploring Molecular-Biomembrane Interactions with Surface Plasmon Resonance and Dual Polarization Interferometry Technology: Expanding the Spotlight onto Biomembrane Structure. Chem Rev 2018; 118:5392-5487. [PMID: 29793341 DOI: 10.1021/acs.chemrev.7b00729] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The molecular analysis of biomolecular-membrane interactions is central to understanding most cellular systems but has emerged as a complex technical challenge given the complexities of membrane structure and composition across all living cells. We present a review of the application of surface plasmon resonance and dual polarization interferometry-based biosensors to the study of biomembrane-based systems using both planar mono- or bilayers or liposomes. We first describe the optical principals and instrumentation of surface plasmon resonance, including both linear and extraordinary transmission modes and dual polarization interferometry. We then describe the wide range of model membrane systems that have been developed for deposition on the chips surfaces that include planar, polymer cushioned, tethered bilayers, and liposomes. This is followed by a description of the different chemical immobilization or physisorption techniques. The application of this broad range of engineered membrane surfaces to biomolecular-membrane interactions is then overviewed and how the information obtained using these techniques enhance our molecular understanding of membrane-mediated peptide and protein function. We first discuss experiments where SPR alone has been used to characterize membrane binding and describe how these studies yielded novel insight into the molecular events associated with membrane interactions and how they provided a significant impetus to more recent studies that focus on coincident membrane structure changes during binding of peptides and proteins. We then discuss the emerging limitations of not monitoring the effects on membrane structure and how SPR data can be combined with DPI to provide significant new information on how a membrane responds to the binding of peptides and proteins.
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Affiliation(s)
- Tzong-Hsien Lee
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Daniel J Hirst
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Ketav Kulkarni
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Mark P Del Borgo
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
| | - Marie-Isabel Aguilar
- Department of Biochemistry and Molecular Biology and Biomedicine Discovery Institute , Monash University , Clayton , VIC 3800 , Australia
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16
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17
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Lee MCG, Sun B. Quantitation of nonspecific protein adsorption at solid–liquid interfaces for single-cell proteomics. CAN J CHEM 2018. [DOI: 10.1139/cjc-2017-0304] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Protein nonspecific adsorption that occurred at the solid–liquid interface has been subjected to intense physical and chemical characterizations due to its crucial role in a wide range of applications, including food and pharmaceutical industries, medical implants, biosensing, and so on. Protein-adsorption caused sample loss has largely hindered the studies of single-cell proteomics; the prevention of such loss requires the understanding of protein–surface adsorption at the proteome level, in which the competitive adsorption of thousands and millions of proteins with vast dynamic range occurs. To this end, we feel the necessity to review current methodologies on their potentials to characterize — more specifically to quantify — the proteome-wide adsorption. We hope this effort can help advancing single-cell proteomics and trace proteomics.
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Affiliation(s)
| | - Bingyun Sun
- Department of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
- Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada
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18
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Ferhan AR, Jackman JA, Cho NJ. Investigating how vesicle size influences vesicle adsorption on titanium oxide: a competition between steric packing and shape deformation. Phys Chem Chem Phys 2018; 19:2131-2139. [PMID: 28045148 DOI: 10.1039/c6cp07930j] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Understanding the adsorption behavior of lipid vesicles at solid-liquid interfaces is important for obtaining fundamental insights into soft matter adsorbates as well as for practical applications such as supported lipid bilayer (SLB) fabrication. While the process of SLB formation has been highly scrutinized, less understood are the details of vesicle adsorption without rupture, especially at high surface coverages. Herein, we tackle this problem by employing simultaneous quartz crystal microbalance-dissipation (QCM-D) and localized surface plasmon resonance (LSPR) measurements in order to investigate the effect of vesicle size (84-211 nm diameter) on vesicle adsorption onto a titanium oxide surface. Owing to fundamental differences in the measurement principles of the two techniques as well as a mismatch in probing volumes, it was possible to determine both the lipid mass adsorbed near the sensor surface as well as the total mass of adsorbed lipid and hydrodynamically coupled solvent in the adsorbed vesicle layer as a whole. With increasing vesicle size, the QCM-D frequency signal exhibited monotonic behavior reaching an asymptotic value, whereas the QCM-D energy dissipation signal continued to increase according to the vesicle size. In marked contrast, the LSPR-tracked lipid mass near the sensor surface followed a parabolic trend, with the greatest corresponding measurement response occurring for intermediate-size vesicles. The findings reveal that the maximum extent of adsorbed vesicles contacting a solid surface occurs at an intermediate vesicle size due to the competing influences of vesicle deformation and steric packing. Looking forward, such information can be applied to control the molecular self-assembly of phospholipid assemblies as well as provide the basis for investigating deformable, soft matter adsorbates.
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Affiliation(s)
- Abdul Rahim Ferhan
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore.
| | - Joshua A Jackman
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore.
| | - Nam-Joon Cho
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue 639798, Singapore. and School of Chemical and Biomedical Engineering, Nanyang Technological University, 62 Nanyang Drive 637459, Singapore
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19
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Michna A. Macroion adsorption-electrokinetic and optical methods. Adv Colloid Interface Sci 2017; 250:95-131. [PMID: 29055493 DOI: 10.1016/j.cis.2017.09.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Revised: 09/22/2017] [Accepted: 09/24/2017] [Indexed: 01/03/2023]
Abstract
Recent studies on macroion adsorption at solid/liquid interfaces evaluated by electrokinetic and optical methods are reviewed. In the first section a description of electrokinetic phenomena at a solid surface is briefly outlined. Various methods for determining both static and dynamic properties of the electrical double layer, such as the appropriate location of the slip plane, are presented. Theoretical approaches are discussed concerning quantitative interpretation of streaming potential/current measurements of homogeneous macroscopic interfaces. Experimental results are presented, involving electrokinetic characteristics of bare surfaces, such as mica, silicon, glass etc. obtained from various types of electrokinetic cells. The surface conductivity effect on zeta potential is underlined. In the next section, various theoretical approaches, proposed to determine a distribution of electrostatic potential and flow distribution within macroion layers, are presented. Accordingly, the influence of the uniform as well as non-uniform distribution of charges within macroion layer, the dissociation degree, and the surface conductance on electrokinetic parameters are discussed. The principles, the advantages and limits of optical techniques as well as AFM are briefly outlined in Section 4. The last section is devoted to the discussion of experimental data obtained by streaming potential/current measurements and optical methods, such as reflectometry, ellipsometry, surface plasmon resonance (SPR), optical waveguide lightmode spectroscopy (OWLS), colloid enhancement, and fluorescence technique, for mono- and multilayers of macroions. Results of polycations (PEI, PAMAM dendrimers, PAH, PDADMAC) and polyanions (PAA, PSS) adsorption on mica, silicon, gold, and PTFE are quantitatively interpreted in terms of theoretical approaches postulating the three dimensional charge distribution or the random sequential adsorption model (RSA). Macroion bilayer formation, experimentally examined by streaming current measurements, and theoretically interpreted in terms of the comprehensive formalism is also reviewed. The utility of electrokinetic measurements, combined with optical methods, for a precise, in situ characteristics of macroion mono- and multilayer formation at solid/liquid interfaces is pointed out.
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Wu C, Li X, Song S, Pei Y, Guo L, Pei Z. QCM Biosensor Based on Polydopamine Surface for Real-Time Analysis of the Binding Kinetics of Protein-Protein Interactions. Polymers (Basel) 2017; 9:E482. [PMID: 30965783 PMCID: PMC6418727 DOI: 10.3390/polym9100482] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Revised: 09/28/2017] [Accepted: 09/29/2017] [Indexed: 12/19/2022] Open
Abstract
A quartz crystal microbalance (QCM) biosensor based on polydopamine (PDA) surface was developed for real-time analysis of the binding kinetics of protein-protein interactions. The biosensor was fabricated by simply immersing the gold sensor chip into an aqueous dopamine solution at pH 8.5 leading to a spontaneous deposition of PDA film onto the sensor chip surface, which was followed by incubation with the protein to immobilize it onto the PDA-coated sensor chip surface via Michael addition and/or Schiff base reactions. In this paper, the interaction between monoclonal anti-myoglobin 7005 antibody (IgG1) and its antigen human cardiac myoglobin was used as a model system for real-time analysis of biomolecule interactions on the biosensor surface. The kinetic parameters of the interaction between anti-myoglobin 7005 and myoglobin were studied on the biosensor surface, which were consistent with the results obtained via amine coupling. The biosensor based on PDA surface has excellent regenerability, reproducibility, and specificity. Compared with the most frequently/typically used amine coupling method for immobilization of proteins on carboxylated substrates, the modification methodology presented in this paper is simple, mild and is not subjected to the limitations of the isoelectric point (pI) of the protein. In addition, the PDA biosensor chip can be easily reused, which makes QCM biosensor analysis more efficient and cost effective.
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Affiliation(s)
- Chunli Wu
- School of Pharmaceutical Sciences, Zhengzhou University, 100 Kexue Avenue, Zhengzhou 450001, China.
| | - Xueming Li
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A & F University, Yangling 712100, China.
| | - Siyu Song
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A & F University, Yangling 712100, China.
| | - Yuxin Pei
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A & F University, Yangling 712100, China.
| | - Lili Guo
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A & F University, Yangling 712100, China.
| | - Zhichao Pei
- Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A & F University, Yangling 712100, China.
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21
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Schartner J, Nabers A, Budde B, Lange J, Hoeck N, Wiltfang J, Kötting C, Gerwert K. An ATR-FTIR Sensor Unraveling the Drug Intervention of Methylene Blue, Congo Red, and Berberine on Human Tau and Aβ. ACS Med Chem Lett 2017; 8:710-714. [PMID: 28740603 DOI: 10.1021/acsmedchemlett.7b00079] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Accepted: 06/09/2017] [Indexed: 12/13/2022] Open
Abstract
Alzheimer's disease affects millions of human beings worldwide. The disease progression is characterized by the formation of plaques and neurofibrillary tangles in the brain, which are based on aggregation processes of the Aβ peptide and tau protein. Today there is no cure and even no in vitro assay available for the identification of drug candidates, which provides direct information concerning the protein secondary structure label-free. Therefore, we developed an attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) sensor, which uses surface bound antibodies to immobilize a desired target protein. The secondary structure of the protein can be evaluated based on the secondary structure sensitive frequency of the amide I band. Direct information about the effect of a drug candidate on the secondary structure distribution of the total target protein fraction within the respective body fluid can be detected by a frequency shift of the amide I band. Thereby, the extent of the amide I shift is indicative for the compound efficiency. The functionality of this approach was demonstrated by the quantification of the effect of the drug candidate methylene blue on the pathogenic misfolded tau protein as extracted from cerebrospinal fluid (CSF). Methylene blue induces a shift from pathogenic folded β-sheet dominated to the healthy monomeric state. A similar effect was observed for congo red on pathogenic Aβ isoforms from CSF. In addition, the effect of berberine on synthetic Aβ1-42 is studied. Berberine seems to decelerate the aggregation process of synthetic Aβ1-42 peptides.
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Affiliation(s)
- Jonas Schartner
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Andreas Nabers
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Brian Budde
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Julia Lange
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Nina Hoeck
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Jens Wiltfang
- Department
of Psychiatry and Psychotherapy, Georg-August-University Göttingen, University Medical
Center, 37099 Göttingen, Germany
- German Center for Neurodegenerative Diseases (DZNE), 37099 Göttingen, Germany
- iBiMED,
Medical Sciences Department, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Carsten Kötting
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
| | - Klaus Gerwert
- Department
of Biophysics, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801 Bochum, Germany
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22
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Heinen S, Weinhart M. Poly(glycidyl ether)-Based Monolayers on Gold Surfaces: Control of Grafting Density and Chain Conformation by Grafting Procedure, Surface Anchor, and Molecular Weight. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:2076-2086. [PMID: 28191961 DOI: 10.1021/acs.langmuir.6b03927] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
For a meaningful correlation of surface coatings with their respective biological response reproducible coating procedures, well-defined surface coatings, and thorough surface characterization with respect to layer thickness and grafting density are indispensable. The same applies to polymeric monolayer coatings which are intended to be used for, e.g., fundamental studies on the volume phase transition of surface end-tethered thermoresponsive polymer chains. Planar gold surfaces are frequently used as model substrates, since they allow a variety of straightforward surface characterization methods. Herein we present reproducible grafting-to procedures performed with thermoresponsive poly(glycidyl ether) copolymers composed of glycidyl methyl ether (GME) and ethyl glycidyl ether (EGE). The copolymers feature different molecular weights (2 kDa, 9 kDa, 24 kDa) and are equipped with varying sulfur-containing anchor groups in order to achieve adjustable grafting densities on gold surfaces and hence control the tethered polymers' chain conformation. We determined "wet" and "dry" thicknesses of these coatings by QCM-D and ellipsometry measurements and deduced anchor distances and degrees of chain overlap of the polymer chains assembled on gold. Grafting under cloud point conditions allowed for higher degrees of chain overlap compared to grafting from a good solvent like ethanol, independent of the used sulfur-containing anchor group for polymers with low (2 kDa) and medium (9 kDa) molecular weights. By contrast, the achieved grafting densities and thus chain overlaps of surface-tethered polymers with high (24 kDa) molecular weights were identical for both grafting methods. Monolayers prepared from an ethanolic solution of poly(glycidyl ether)s equipped with sterically demanding disulfide-containing anchors revealed the lowest degrees of chain overlap. The ratio of the radius of gyration to the anchor distance (2 Rg/l) of the latter coating was found to be lower than 1.4, indicating that the assembly was rather in the mushroom-like than in the brush regime. Polymer chains with thiol-containing anchors of different alkyl chain lengths (C11SH vs C4SH) formed assemblies with comparable degrees of chain overlap with 2 Rg/l values above 1.4 and are thus in the brush regime. Molecular weights influenced the achievable degree of chain overlap on the surface. Coatings prepared with the medium molecular weight polymer (9 kDa) resulted in the highest chain packing density. Control of grafting density and thus chain overlap in different regimes (brush vs mushroom) on planar gold substrates are attainable for monolayer coatings with poly(GME-ran-EGE) by adjusting the polymer's molecular weight and anchor group as well as the conditions for the grafting-to procedure.
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Affiliation(s)
- Silke Heinen
- Institute of Chemistry and Biochemistry, Freie Universitaet Berlin , Takustraße 3, 14195 Berlin, Germany
| | - Marie Weinhart
- Institute of Chemistry and Biochemistry, Freie Universitaet Berlin , Takustraße 3, 14195 Berlin, Germany
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23
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Ferhan AR, Jackman JA, Cho NJ. Integration of Quartz Crystal Microbalance-Dissipation and Reflection-Mode Localized Surface Plasmon Resonance Sensors for Biomacromolecular Interaction Analysis. Anal Chem 2016; 88:12524-12531. [DOI: 10.1021/acs.analchem.6b04303] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Abdul Rahim Ferhan
- School
of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798
| | - Joshua A. Jackman
- School
of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798
| | - Nam-Joon Cho
- School
of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798
- School
of Chemical and Biomedical Engineering, Nanyang Technological University, 62 Nanyang Drive, Singapore 637459
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24
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Friedt JM, Francis L. Combined surface acoustic wave and surface plasmon resonance measurement of collagen and fibrinogen layer physical properties. SENSING AND BIO-SENSING RESEARCH 2016. [DOI: 10.1016/j.sbsr.2016.05.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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25
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Leclercq L, Vert M. Comparison between protein repulsions by diblock PLA-PEO and albumin nanocoatings using OWLS. JOURNAL OF BIOMATERIALS SCIENCE-POLYMER EDITION 2016; 28:177-193. [DOI: 10.1080/09205063.2016.1262160] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Laurent Leclercq
- Faculty of Pharmacy, IBMM-UMR CNRS 5247, University of Montpellier – CNRS, Montpellier Cedex 5, France
| | - Michel Vert
- Faculty of Pharmacy, IBMM-UMR CNRS 5247, University of Montpellier – CNRS, Montpellier Cedex 5, France
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26
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Teixeira R, Reis RL, Pashkuleva I. Influence of the sulfation degree of glycosaminoglycans on their multilayer assembly with poly-l-lysine. Colloids Surf B Biointerfaces 2016; 145:567-575. [DOI: 10.1016/j.colsurfb.2016.05.069] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Revised: 05/03/2016] [Accepted: 05/25/2016] [Indexed: 10/21/2022]
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Affiliation(s)
- Alinaghi Salari
- Department of Chemical Engineering; University of Toronto; 200 College Street Toronto Ontario M5S 3E5 Canada
| | - Eugenia Kumacheva
- Department of Chemical Engineering; University of Toronto; 200 College Street Toronto Ontario M5S 3E5 Canada
- Department of Chemistry; University of Toronto; 80 Saint George Street Toronto Ontario M5S 3H6 Canada
- Institute of Biomaterials and Biomedical Engineering; University of Toronto; 164 College Street Toronto Ontario M5S 3G9 Canada
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28
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Localized Surface Plasmon Resonance Biosensing: Current Challenges and Approaches. SENSORS 2015; 15:15684-716. [PMID: 26147727 PMCID: PMC4541850 DOI: 10.3390/s150715684] [Citation(s) in RCA: 219] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Revised: 06/13/2015] [Accepted: 06/23/2015] [Indexed: 12/16/2022]
Abstract
Localized surface plasmon resonance (LSPR) has emerged as a leader among label-free biosensing techniques in that it offers sensitive, robust, and facile detection. Traditional LSPR-based biosensing utilizes the sensitivity of the plasmon frequency to changes in local index of refraction at the nanoparticle surface. Although surface plasmon resonance technologies are now widely used to measure biomolecular interactions, several challenges remain. In this article, we have categorized these challenges into four categories: improving sensitivity and limit of detection, selectivity in complex biological solutions, sensitive detection of membrane-associated species, and the adaptation of sensing elements for point-of-care diagnostic devices. The first section of this article will involve a conceptual discussion of surface plasmon resonance and the factors affecting changes in optical signal detected. The following sections will discuss applications of LSPR biosensing with an emphasis on recent advances and approaches to overcome the four limitations mentioned above. First, improvements in limit of detection through various amplification strategies will be highlighted. The second section will involve advances to improve selectivity in complex media through self-assembled monolayers, “plasmon ruler” devices involving plasmonic coupling, and shape complementarity on the nanoparticle surface. The following section will describe various LSPR platforms designed for the sensitive detection of membrane-associated species. Finally, recent advances towards multiplexed and microfluidic LSPR-based devices for inexpensive, rapid, point-of-care diagnostics will be discussed.
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Polyglycerol based coatings to reduce non-specific protein adsorption in sample vials and on SPR sensors. Anal Chim Acta 2015; 867:47-55. [DOI: 10.1016/j.aca.2015.01.048] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Revised: 01/23/2015] [Accepted: 01/30/2015] [Indexed: 12/26/2022]
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30
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Damiati S, Schrems A, Sinner EK, Sleytr UB, Schuster B. Probing peptide and protein insertion in a biomimetic S-layer supported lipid membrane platform. Int J Mol Sci 2015; 16:2824-38. [PMID: 25633104 PMCID: PMC4346867 DOI: 10.3390/ijms16022824] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2014] [Revised: 01/08/2015] [Accepted: 01/22/2015] [Indexed: 11/17/2022] Open
Abstract
The most important aspect of synthetic lipid membrane architectures is their ability to study functional membrane-active peptides and membrane proteins in an environment close to nature. Here, we report on the generation and performance of a biomimetic platform, the S-layer supported lipid membrane (SsLM), to investigate the structural and electrical characteristics of the membrane-active peptide gramicidin and the transmembrane protein α-hemolysin in real-time using a quartz crystal microbalance with dissipation monitoring in combination with electrochemical impedance spectroscopy. A shift in membrane resistance is caused by the interaction of α-hemolysin and gramicidin with SsLMs, even if only an attachment onto, or functional channels through the lipid membrane, respectively, are formed. Moreover, the obtained results did not indicate the formation of functional α-hemolysin pores, but evidence for functional incorporation of gramicidin into this biomimetic architecture is provided.
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Affiliation(s)
- Samar Damiati
- Institute for Synthetic Bioarchitectures, Department of NanoBiotechnology, University of Natural Resources and Life Sciences, Muthgasse 11, Vienna 1190, Austria.
| | - Angelika Schrems
- Institute for Synthetic Bioarchitectures, Department of NanoBiotechnology, University of Natural Resources and Life Sciences, Muthgasse 11, Vienna 1190, Austria.
| | - Eva-Kathrin Sinner
- Institute for Synthetic Bioarchitectures, Department of NanoBiotechnology, University of Natural Resources and Life Sciences, Muthgasse 11, Vienna 1190, Austria.
| | - Uwe B Sleytr
- Institute for Biophysics, Department of NanoBiotechnology, University of Natural Resources and Life Sciences, Muthgasse 11, Vienna 1190, Austria.
| | - Bernhard Schuster
- Institute for Synthetic Bioarchitectures, Department of NanoBiotechnology, University of Natural Resources and Life Sciences, Muthgasse 11, Vienna 1190, Austria.
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31
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Wei Y, Thyparambil AA, Wu Y, Latour RA. Adsorption-induced changes in ribonuclease A structure and enzymatic activity on solid surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:14849-14858. [PMID: 25420087 PMCID: PMC4270395 DOI: 10.1021/la503854a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2014] [Revised: 11/22/2014] [Indexed: 05/30/2023]
Abstract
Ribonuclease A (RNase A) is a small globular enzyme that lyses RNA. The remarkable solution stability of its structure and enzymatic activity has led to its investigation to develop a new class of drugs for cancer chemotherapeutics. However, the successful clinical application of RNase A has been reported to be limited by insufficient stability and loss of enzymatic activity when it was coupled with a biomaterial carrier for drug delivery. The objective of this study was to characterize the structural stability and enzymatic activity of RNase A when it was adsorbed on different surface chemistries (represented by fused silica glass, high-density polyethylene, and poly(methyl-methacrylate)). Changes in protein structure were measured by circular dichroism, amino acid labeling with mass spectrometry, and in vitro assays of its enzymatic activity. Our results indicated that the process of adsorption caused RNase A to undergo a substantial degree of unfolding with significant differences in its adsorbed structure on each material surface. Adsorption caused RNase A to lose about 60% of its native-state enzymatic activity independent of the material on which it was adsorbed. These results indicate that the native-state structure of RNase A is greatly altered when it is adsorbed on a wide range of surface chemistries, especially at the catalytic site. Therefore, drug delivery systems must focus on retaining the native structure of RNase A in order to maintain a high level of enzymatic activity for applications such as antitumor chemotherapy.
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Affiliation(s)
- Yang Wei
- Department
of Bioengineering, Clemson University, 501 Rhodes Engineering Research
Center, Clemson, South Carolina 29634, United States
| | - Aby A. Thyparambil
- Department
of Bioengineering, Clemson University, 501 Rhodes Engineering Research
Center, Clemson, South Carolina 29634, United States
| | - Yonnie Wu
- Department
of Chemistry and Biochemistry, Auburn University, 172 Chemistry Building, Auburn, Alabama 36849, United States
| | - Robert A. Latour
- Department
of Bioengineering, Clemson University, 501 Rhodes Engineering Research
Center, Clemson, South Carolina 29634, United States
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Krishnamoorthy M, Hakobyan S, Ramstedt M, Gautrot JE. Surface-initiated polymer brushes in the biomedical field: applications in membrane science, biosensing, cell culture, regenerative medicine and antibacterial coatings. Chem Rev 2014; 114:10976-1026. [PMID: 25353708 DOI: 10.1021/cr500252u] [Citation(s) in RCA: 393] [Impact Index Per Article: 39.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Mahentha Krishnamoorthy
- Institute of Bioengineering and ‡School of Engineering and Materials Science, Queen Mary University of London , Mile End Road, London E1 4NS, United Kingdom
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Wei Q, Becherer T, Angioletti-Uberti S, Dzubiella J, Wischke C, Neffe AT, Lendlein A, Ballauff M, Haag R. Protein Interactions with Polymer Coatings and Biomaterials. Angew Chem Int Ed Engl 2014; 53:8004-31. [DOI: 10.1002/anie.201400546] [Citation(s) in RCA: 524] [Impact Index Per Article: 52.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2014] [Indexed: 01/07/2023]
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Wei Q, Becherer T, Angioletti-Uberti S, Dzubiella J, Wischke C, Neffe AT, Lendlein A, Ballauff M, Haag R. Wechselwirkungen von Proteinen mit Polymerbeschichtungen und Biomaterialien. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201400546] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Heller GT, Zwang TJ, Sarapata EA, Haber MA, Sazinsky MH, Radunskaya AE, Johal MS. Accounting for unintended binding events in the analysis of quartz crystal microbalance kinetic data. Colloids Surf B Biointerfaces 2014; 117:425-31. [PMID: 24704634 DOI: 10.1016/j.colsurfb.2014.02.044] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2013] [Revised: 02/13/2014] [Accepted: 02/28/2014] [Indexed: 10/25/2022]
Abstract
Previous methods for analyzing protein-ligand binding events using the quartz crystal microbalance with dissipation monitoring (QCM-D) fail to account for unintended binding that inevitably occurs during surface measurements and obscure kinetic information. In this article, we present a system of differential equations that accounts for both reversible and irreversible unintended interactions. This model is tested on three protein-ligand systems, each of which has different features, to establish the feasibility of using the QCM-D for protein binding analysis. Based on this analysis, we were able to obtain kinetic information for the intended interaction that is consistent with those obtained in literature via bulk-phase methods. In the appendix, we include a method for decoupling these from the intended binding events and extracting relevant affinity information.
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Affiliation(s)
- Gabriella T Heller
- Chemistry Department, Pomona College, 645 North College Avenue, Claremont, CA 91711, United States
| | - Theodore J Zwang
- Chemistry Department, Pomona College, 645 North College Avenue, Claremont, CA 91711, United States
| | - Elizabeth A Sarapata
- Mathematics Department, Pomona College, 610 North College Avenue, Claremont, CA 91711, United States
| | - Michael A Haber
- Chemistry Department, Pomona College, 645 North College Avenue, Claremont, CA 91711, United States
| | - Matthew H Sazinsky
- Chemistry Department, Pomona College, 645 North College Avenue, Claremont, CA 91711, United States
| | - Ami E Radunskaya
- Mathematics Department, Pomona College, 610 North College Avenue, Claremont, CA 91711, United States
| | - Malkiat S Johal
- Chemistry Department, Pomona College, 645 North College Avenue, Claremont, CA 91711, United States.
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Rodenhausen KB, Schmidt D, Rice C, Hofmann T, Schubert E, Schubert M. Detection of Organic Attachment onto Highly Ordered Three-Dimensional Nanostructure Thin Films by Generalized Ellipsometry and Quartz Crystal Microbalance with Dissipation Techniques. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/978-3-642-40128-2_7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
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Sharma H, Agarwal M, Goswami M, Sharma A, Roy SK, Rai R, Murugan M. Biosensors: tool for food borne pathogen detection. Vet World 2013. [DOI: 10.14202/vetworld.2013.968-973] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
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Treccani L, Yvonne Klein T, Meder F, Pardun K, Rezwan K. Functionalized ceramics for biomedical, biotechnological and environmental applications. Acta Biomater 2013; 9:7115-50. [PMID: 23567940 DOI: 10.1016/j.actbio.2013.03.036] [Citation(s) in RCA: 108] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 03/21/2013] [Accepted: 03/23/2013] [Indexed: 12/12/2022]
Abstract
Surface functionalization has become of paramount importance and is considered a fundamental tool for the development and design of countless devices and engineered systems for key technological areas in biomedical, biotechnological and environmental applications. In this review, surface functionalization strategies for alumina, zirconia, titania, silica, iron oxide and calcium phosphate are presented and discussed. These materials have become particularly important concerning the aforementioned applications, being not only of great academic, but also of steadily increasing human and commercial, interest. In this review, special emphasis is given to their use as biomaterials, biosensors, biological targets, drug delivery systems, implants, chromatographic supports for biomolecule purification and analysis, and adsorbents for toxic substances and pollutants. The objective of this review is to provide a broad picture of the enormous possibilities offered by surface functionalization and to identify particular challenges regarding surface analysis and characterization.
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Affiliation(s)
- Laura Treccani
- University of Bremen, Advanced Ceramics, Am Biologischen Garten 2, 28359 Bremen, Germany.
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Davila J, Toulemon D, Garnier T, Garnier A, Senger B, Voegel JC, Mésini PJ, Schaaf P, Boulmedais F, Jierry L. Bioaffinity sensor based on nanoarchitectonic films: control of the specific adsorption of proteins through the dual role of an ethylene oxide spacer. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:7488-7498. [PMID: 23346932 DOI: 10.1021/la3045779] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The identification and quantification of biomarkers or proteins is a real challenge in allowing the early detection of diseases. The functionalization of the biosensor surface has to be properly designed to prevent nonspecific interactions and to detect the biomolecule of interest specifically. A multilayered nanoarchitecture, based on polyelectrolyte multilayers (PEM) and the sequential immobilization of streptavidin and a biotinylated antibody, was elaborated as a promising platform for the label-free sensing of targeted proteins. We choose ovalbumin as an example. Thanks to the versatility of PEM films, the platform was built on two types of sensor surface and was evaluated using both optical- and viscoelastic-based techniques, namely, optical waveguide lightmode spectroscopy and the quartz crystal microbalance, respectively. A library of biotinylated poly(acrylic acids) (PAAs) was synthesized by grafting biotin moieties at different grafting ratios (GR). The biotin moieties were linked to the PAA chains through ethylene oxide (EO) spacers of different lengths. The adsorption of the PAA-EOn-biotin (GR) layer on a PEM precursor film allows tuning the surface density in biotin and thus the streptavidin adsorption mainly through the grafting ratio. The nonspecific adsorption of serum was reduced and even suppressed depending on the length of the EO arms. We showed that to obtain an antifouling polyelectrolyte the grafting of EO9 or EO19 chains at 25% in GR is sufficient. Thus, the spacer has a dual role: ensuring the antifouling property and allowing the accessibility of biotin moieties. Finally, an optimized platform based on the PAA-EO9-biotin (25%)/streptavidin/biotinylated-antibody architecture was built and demonstrated promising performance as interface architecture for bioaffinity sensing of a targeted protein, in our case, ovalbumin.
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Affiliation(s)
- Johanna Davila
- Centre National de la Recherche Scientifique, Unité Propre de Recherche 22, Institut Charles Sadron, Strasbourg, France
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Sofikitis D, Stamataki K, Everest MA, Papadakis V, Stehle JL, Loppinet B, Rakitzis TP. Sensitivity enhancement for evanescent-wave sensing using cavity-ring-down ellipsometry. OPTICS LETTERS 2013; 38:1224-1226. [PMID: 23595438 DOI: 10.1364/ol.38.001224] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
We demonstrate a method to increase the sensitivity of the s-p phase shift under total internal reflection (TIR) for optical sensing. This is achieved by the introduction of two simple dielectric layers to the TIR surface of a fused silica prism. The enhanced sensitivity is demonstrated using evanescent-wave cavity-ring-down-ellipsometry by measuring the refractive index of liquid mixtures and by studying the adsorption of polymers to the TIR surface of the fused silica prism.
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Affiliation(s)
- Dimitris Sofikitis
- Institute of Electronic Structure and Laser, Foundation for Research and Technology-Hellas, Heraklion-Crete 71110, Greece
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Sarangi NK, Patnaik A. L-Tryptophan-Induced Electron Transport across Supported Lipid Bilayers: an Alkyl-Chain Tilt-Angle, and Bilayer-Symmetry Dependence. Chemphyschem 2012; 13:4258-70. [DOI: 10.1002/cphc.201200655] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2012] [Revised: 09/20/2012] [Indexed: 11/11/2022]
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