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Zhao Q, Hong X, Wang Y, Zhang S, Ding Z, Meng X, Song Q, Hong Q, Jiang W, Shi X, Cai T, Cong Y. An immobilized antibody-based affinity grid strategy for on-grid purification of target proteins enables high-resolution cryo-EM. Commun Biol 2024; 7:715. [PMID: 38858498 PMCID: PMC11164986 DOI: 10.1038/s42003-024-06406-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 05/31/2024] [Indexed: 06/12/2024] Open
Abstract
In cryo-electron microscopy (cryo-EM), sample preparation poses a critical bottleneck, particularly for rare or fragile macromolecular assemblies and those suffering from denaturation and particle orientation distribution issues related to air-water interface. In this study, we develop and characterize an immobilized antibody-based affinity grid (IAAG) strategy based on the high-affinity PA tag/NZ-1 antibody epitope tag system. We employ Pyr-NHS as a linker to immobilize NZ-1 Fab on the graphene oxide or carbon-covered grid surface. Our results demonstrate that the IAAG grid effectively enriches PA-tagged target proteins and overcomes preferred orientation issues. Furthermore, we demonstrate the utility of our IAAG strategy for on-grid purification of low-abundance target complexes from cell lysates, enabling atomic resolution cryo-EM. This approach greatly streamlines the purification process, reduces the need for large quantities of biological samples, and addresses common challenges encountered in cryo-EM sample preparation. Collectively, our IAAG strategy provides an efficient and robust means for combined sample purification and vitrification, feasible for high-resolution cryo-EM. This approach holds potential for broader applicability in both cryo-EM and cryo-electron tomography (cryo-ET).
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Affiliation(s)
- Qiaoyu Zhao
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Xiaoyu Hong
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Yanxing Wang
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Shaoning Zhang
- State Key Laboratory of High Performance Ceramics and Superfine Microstructure, Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China
| | - Zhanyu Ding
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Xueming Meng
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Qianqian Song
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Qin Hong
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China
| | - Wanying Jiang
- Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, China
| | - Xiangyi Shi
- Shanghai Nanoport, Thermo Fisher Scientific, Shanghai, China
| | - Tianxun Cai
- State Key Laboratory of High Performance Ceramics and Superfine Microstructure, Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China
| | - Yao Cong
- Key Laboratory of RNA Innovation, Science and Engineering, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China.
- Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, China.
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Hu H, Guo Y, Zhao J. Manufacturing Shape-Controllable Flexible PEDOT/rGO Composite Electrodes for Planar Micro-Supercapacitors. MATERIALS (BASEL, SWITZERLAND) 2024; 17:2144. [PMID: 38730950 PMCID: PMC11084726 DOI: 10.3390/ma17092144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 04/27/2024] [Accepted: 04/30/2024] [Indexed: 05/13/2024]
Abstract
Flexible electronic products, with their characteristics of flexibility and wearability, have attracted significant attention and have become an important direction in the research and development of the electronics industry. Planar micro-supercapacitors (MSCs) with flexible composite electrodes can provide reliable energy support for these products, propelling their further development. The research employed a quick, effective, and environmentally friendly method of laser scribing to create shape-controllable flexible composite electrodes on composite films of Poly(3,4-ethylenedioxythiophene) and graphene oxide (PEDOT/GO), which were subsequently assembled into MSCs. An analysis of the composite electrode morphology, structure, and elemental distribution was conducted through the utilization of SEM, TEM, and XPS techniques. Following this, a comprehensive evaluation of the electrochemical performance of the flexible MSCs was carried out, which included cyclic voltammetry (CV), galvanostatic charge/discharge (GCD), and assessment of cyclic stability. The analysis of the CV results indicated that the MSCs achieved the areal capacitance of 5.78 mF/cm2 at 5 mV/s. After 5000 cycles at a current density of 0.05 mA/cm2, the capacitance retention rate was 85.4%. The high areal capacitance and strong cycle stability of MSCs highlight the potential of PEDOT/reduced graphene oxide (PEDOT/rGO) electrodes in electrode applications.
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Affiliation(s)
| | - Yanyan Guo
- College of Integrated Circuit Science and Engineering, Nanjing University of Posts and Telecommunications, Nanjing 210023, China;
| | - Jiang Zhao
- College of Integrated Circuit Science and Engineering, Nanjing University of Posts and Telecommunications, Nanjing 210023, China;
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Sadighbayan D, Minhas-Khan A, Ghafar-Zadeh E. Laser-Induced Graphene-Functionalized Field-Effect Transistor-Based Biosensing: A Potent Candidate for COVID-19 Detection. IEEE Trans Nanobioscience 2022; 21:232-245. [PMID: 34648455 PMCID: PMC9088816 DOI: 10.1109/tnb.2021.3119996] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 07/30/2021] [Accepted: 09/29/2021] [Indexed: 11/26/2022]
Abstract
Speedy and on-time detection of coronavirus disease 2019 (COVID-19) is of high importance to control the pandemic effectively and stop its disastrous consequences. A widely available, reliable, label-free, and rapid test that can recognize tiny amounts of specific biomarkers might be the solution. Nanobiosensors are one of the most attractive candidates for this purpose. Integration of graphene with biosensing devices shifts the performance of these systems to an incomparable level. Between the various arrangements using this wonder material, field-effect transistors (FETs) display a precise detection even in complex samples. The emergence of pioneering biosensors for detecting a wide range of diseases especially COVID-19 created the incentive to prepare a review of the recent graphene-FET biosensing platforms. However, the graphene fabrication and transfer to the surface of the device is an imperative factor for researchers to take into account. Therefore, we also reviewed the common methods of manufacturing graphene for biosensing applications and discuss their advantages and disadvantages. One of the most recent synthesizing techniques - laser-induced graphene (LIG) - is attracting attention owing to its extraordinary benefits which are thoroughly explained in this article. Finally, a conclusion highlighting the current challenges is presented.
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Affiliation(s)
- Deniz Sadighbayan
- Biologically Inspired Sensors and Actuators Laboratory (BioSA)York UniversityTorontoONM3J 1P3Canada
| | - Aamir Minhas-Khan
- Biologically Inspired Sensors and Actuators Laboratory (BioSA)York UniversityTorontoONM3J 1P3Canada
| | - Ebrahim Ghafar-Zadeh
- Biologically Inspired Sensors and Actuators Laboratory (BioSA)York UniversityTorontoONM3J 1P3Canada
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Halima HB, Errachid A, Jaffrezic‐Renault N. Electrochemical Affinity Sensors Using Field Effect Transducer Devices for Chemical Analysis. ELECTROANAL 2021. [DOI: 10.1002/elan.202100451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hamdi Ben Halima
- University of Lyon Institute of Analytical Sciences 69100 Villeurbanne France
| | - Abdelhamid Errachid
- University of Lyon Institute of Analytical Sciences 69100 Villeurbanne France
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Béraud A, Sauvage M, Bazán CM, Tie M, Bencherif A, Bouilly D. Graphene field-effect transistors as bioanalytical sensors: design, operation and performance. Analyst 2020; 146:403-428. [PMID: 33215184 DOI: 10.1039/d0an01661f] [Citation(s) in RCA: 73] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Graphene field-effect transistors (GFETs) are emerging as bioanalytical sensors, in which their responsive electrical conductance is used to perform quantitative analyses of biologically-relevant molecules such as DNA, proteins, ions and small molecules. This review provides a detailed evaluation of reported approaches in the design, operation and performance assessment of GFET biosensors. We first dissect key design elements of these devices, along with most common approaches for their fabrication. We compare possible modes of operation of GFETs as sensors, including transfer curves, output curves and time series as well as their integration in real-time or a posteriori protocols. Finally, we review performance metrics reported for the detection and quantification of bioanalytes, and discuss limitations and best practices to optimize the use of GFETs as bioanalytical sensors.
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Affiliation(s)
- Anouk Béraud
- Institute for Research in Immunology and Cancer (IRIC), Université de Montréal, Montréal, Canada.
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Chiu NF, Wang YH, Chen CY. Clinical Application for Screening Down's Syndrome by Using Carboxylated Graphene Oxide-Based Surface Plasmon Resonance Aptasensors. Int J Nanomedicine 2020; 15:8131-8149. [PMID: 33144830 PMCID: PMC7594198 DOI: 10.2147/ijn.s270938] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 09/29/2020] [Indexed: 12/17/2022] Open
Abstract
BACKGROUND Advanced medical detection technology requires high sensitivity and accuracy to increase the disease detection rate. We showed that carboxyl-functionalized graphene oxide (carboxyl-GO) biosensing materials are capable of accurate detection. METHODS We developed a carboxylated GO-based surface plasmon resonance (SPR) aptasensor suitable for screening Down's syndrome in clinical serum. This biosensing material could rapidly and accurately detect hCG protein with a low concentration to identify fetal Down's syndrome. The developed carboxyl-GO-based SPR aptasensor showed excellent sensitivity and limit of detection without the use of antibodies and without any specific preference. RESULTS hCG protein detection limits of 1 pM in buffer samples and 1.9 pM in clinical serum samples were achieved. The results showed that the carboxyl-GO-based chip could detect hCG well below the normal physiological level of serum protein (5.0 mIU/mL). High affinity, sensitivity, and better detection limit were obtained in the range of 1.9 pM to 135 pM. The results showed a 5k-fold dilution factor, and that an SPR angle shift of more than 20 millidegrees (mo) was associated with a significant risk of fetal Down's syndrome compared to normal pregnant women. The results clearly showed that the detection of hCG protein in serum samples from pregnant women at 12-19 weeks could be used to screen Down's syndrome with high selectivity and sensitivity. CONCLUSION Our findings suggest the potential application of carboxyl-GO film in proof-of-concept studies for serum assays as a new type of SPR material. In addition, peptide and carboxyl-GO films may be conducive to the development of future point of care testing and rapid diagnostic devices for other diseases such as cancer.
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Affiliation(s)
- Nan-Fu Chiu
- Laboratory of Nano-Photonics and Biosensors, Institute of Electro-Optical Engineering, National Taiwan Normal University, Taipei City 11677, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei City 11677, Taiwan
| | - Ying-Hao Wang
- Laboratory of Nano-Photonics and Biosensors, Institute of Electro-Optical Engineering, National Taiwan Normal University, Taipei City 11677, Taiwan
- Department of Obstetrics and Gynecology, Mackay Memorial Hospital, Taipei City 10449, Taiwan
| | - Chen-Yu Chen
- Department of Obstetrics and Gynecology, Mackay Memorial Hospital, Taipei City 10449, Taiwan
- Department of Medicine, Mackay Medical College, Taipei City 25245, Taiwan
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Sethi J, Van Bulck M, Suhail A, Safarzadeh M, Perez-Castillo A, Pan G. A label-free biosensor based on graphene and reduced graphene oxide dual-layer for electrochemical determination of beta-amyloid biomarkers. Mikrochim Acta 2020; 187:288. [PMID: 32333119 PMCID: PMC7182627 DOI: 10.1007/s00604-020-04267-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Accepted: 04/10/2020] [Indexed: 01/03/2023]
Abstract
A label-free biosensor is developed for the determination of plasma-based Aβ1–42 biomarker in Alzheimer’s disease (AD). The platform is based on highly conductive dual-layer of graphene and electrochemically reduced graphene oxide (rGO). The modification of dual-layer with 1-pyrenebutyric acid N-hydroxysuccinimide ester (Pyr-NHS) is achieved to facilitate immobilization of H31L21 antibody. The effect of these modifications were studied with morphological, spectral and electrochemical techniques. The response of the biosensor was evaluated using differential pulse voltammetry (DPV). The data was acquired at a working potential of ~ 180 mV and a scan rate of 50 mV s−1. A low limit of detection (LOD) of 2.398 pM is achieved over a wide linear range from 11 pM to 55 nM. The biosensor exhibits excellent specificity over Aβ1–40 and ApoE ε4 interfering species. Thus, it provides a viable tool for electrochemical determination of Aβ1–42. Spiked human and mice plasmas were used for the successful validation of the sensing platform in bio-fluidic samples. The results obtained from mice plasma analysis concurred with the immunohistochemistry (IHC) and magnetic resonance imaging (MRI) data obtained from brain analysis. Schematic representation of the electrochemical system proposed for Aβ1–42 determination: (a) modification of graphene screen-printed electrode (SPE) with monolayer graphene oxide (GO) followed by its electrochemical reduction generating graphene/reduced graphene oxide (rGO) dual-layer (b), modification of dual-layer with linker (c), Aβ1–42 antibody (H31L21) (d), bovine serum albumin (BSA) (e) and Aβ1–42 peptide (f). ![]()
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Affiliation(s)
- Jagriti Sethi
- Wolfson Nanomagnetics Laboratory, School of Engineering, Computing and Mathematics, University of Plymouth, Devon, PL4 8AA, UK.
| | - Michiel Van Bulck
- Instituto de Investigaciones Biomédicas (CSIC-UAM), Arturo Duperier, 4, 28029, Madrid, Spain.,Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), Valderrebollo, 5, 28031, Madrid, Spain
| | - Ahmed Suhail
- Wolfson Nanomagnetics Laboratory, School of Engineering, Computing and Mathematics, University of Plymouth, Devon, PL4 8AA, UK
| | - Mina Safarzadeh
- Wolfson Nanomagnetics Laboratory, School of Engineering, Computing and Mathematics, University of Plymouth, Devon, PL4 8AA, UK
| | - Ana Perez-Castillo
- Instituto de Investigaciones Biomédicas (CSIC-UAM), Arturo Duperier, 4, 28029, Madrid, Spain.,Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), Valderrebollo, 5, 28031, Madrid, Spain
| | - Genhua Pan
- Wolfson Nanomagnetics Laboratory, School of Engineering, Computing and Mathematics, University of Plymouth, Devon, PL4 8AA, UK
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A review on nanomaterial-based field effect transistor technology for biomarker detection. Mikrochim Acta 2019; 186:739. [DOI: 10.1007/s00604-019-3850-6] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 09/17/2019] [Indexed: 12/27/2022]
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Macedo LJA, Iost RM, Hassan A, Balasubramanian K, Crespilho FN. Bioelectronics and Interfaces Using Monolayer Graphene. ChemElectroChem 2018. [DOI: 10.1002/celc.201800934] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Lucyano J. A. Macedo
- São Carlos Institute of Chemistry; University of São Paulo; São Carlos SP 13560-970 Brazil
| | - Rodrigo M. Iost
- Department of Chemistry School of Analytical Sciences Adlershof (SALSA) and IRIS Adlershof; Humboldt-Universität zu Berlin; Berlin 10099 Germany
| | - Ayaz Hassan
- São Carlos Institute of Chemistry; University of São Paulo; São Carlos SP 13560-970 Brazil
| | - Kannan Balasubramanian
- Department of Chemistry School of Analytical Sciences Adlershof (SALSA) and IRIS Adlershof; Humboldt-Universität zu Berlin; Berlin 10099 Germany
| | - Frank N. Crespilho
- São Carlos Institute of Chemistry; University of São Paulo; São Carlos SP 13560-970 Brazil
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Haslam C, Damiati S, Whitley T, Davey P, Ifeachor E, Awan SA. Label-Free Sensors Based on Graphene Field-Effect Transistors for the Detection of Human Chorionic Gonadotropin Cancer Risk Biomarker. Diagnostics (Basel) 2018; 8:E5. [PMID: 29316718 PMCID: PMC5871988 DOI: 10.3390/diagnostics8010005] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2017] [Revised: 12/27/2017] [Accepted: 01/03/2018] [Indexed: 12/27/2022] Open
Abstract
We report on the development of label-free chemical vapour deposition (CVD) graphene field effect transistor (GFET) immunosensors for the sensitive detection of Human Chorionic Gonadotropin (hCG), a glycoprotein risk biomarker of certain cancers. The GFET sensors were fabricated on Si/SiO₂ substrate using photolithography with evaporated chromium and sputtered gold contacts. GFET channels were functionalised with a linker molecule to an immobile anti-hCG antibody on the surface of graphene. The binding reaction of the antibody with varying concentration levels of hCG antigen demonstrated the limit of detection of the GFET sensors to be below 1 pg/mL using four-probe electrical measurements. We also show that annealing can significantly improve the carrier transport properties of GFETs and shift the Dirac point (Fermi level) with reduced p-doping in back-gated measurements. The developed GFET biosensors are generic and could find applications in a broad range of medical diagnostics in addition to cancer, such as neurodegenerative (Alzheimer's and Parkinson's ) and cardiovascular disorders.
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Affiliation(s)
- Carrie Haslam
- Wolfson Nanomaterials and Devices Laboratory, School of Computing, Electronics and Mathematics, Faculty of Science and Engineering, University of Plymouth, Plymouth PL4 8AA, UK.
| | - Samar Damiati
- Department of Biochemistry, Faculty of Science, King Abdulaziz University (KAU), Jeddah 21589, Saudi Arabia.
| | - Toby Whitley
- Wolfson Nanomaterials and Devices Laboratory, School of Computing, Electronics and Mathematics, Faculty of Science and Engineering, University of Plymouth, Plymouth PL4 8AA, UK.
| | - Paul Davey
- Wolfson Nanomaterials and Devices Laboratory, School of Computing, Electronics and Mathematics, Faculty of Science and Engineering, University of Plymouth, Plymouth PL4 8AA, UK.
| | - Emmanuel Ifeachor
- Wolfson Nanomaterials and Devices Laboratory, School of Computing, Electronics and Mathematics, Faculty of Science and Engineering, University of Plymouth, Plymouth PL4 8AA, UK.
| | - Shakil A Awan
- Wolfson Nanomaterials and Devices Laboratory, School of Computing, Electronics and Mathematics, Faculty of Science and Engineering, University of Plymouth, Plymouth PL4 8AA, UK.
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