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Pal M, Mohapatra RK, Sarangi AK, Sahu AR, Mishra S, Patel A, Bhoi SK, Elnaggar AY, El Azab IH, Alissa M, El-Bahy SM. A comparative analysis of the binary and multiclass classified chest X-ray images of pneumonia and COVID-19 with ML and DL models. Open Med (Wars) 2025; 20:20241110. [PMID: 39927166 PMCID: PMC11806240 DOI: 10.1515/med-2024-1110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 11/11/2024] [Accepted: 11/17/2024] [Indexed: 02/11/2025] Open
Abstract
Background The highly infectious coronavirus disease 2019 (COVID-19) is caused by severe acute respiratory syndrome coronavirus 2, the seventh coronavirus. It is the longest pandemic in recorded history worldwide. Many countries are still reporting COVID-19 cases even in the fifth year of its emergence. Objective The performance of various machine learning (ML) and deep learning (DL) models was studied for image-based classification of the lungs infected with COVID-19, pneumonia (viral and bacterial), and normal cases from the chest X-rays (CXRs). Methods The K-nearest neighbour and logistics regression as the two ML models, and Visual Geometry Group-19, Vision transformer, and ConvMixer as the three DL models were included in the investigation to compare the brevity of the detection and classification of the cases. Results Among the investigated models, ConvMixer returned the best result in terms of accuracy, recall, precision, F1-score and area under the curve for both binary as well as multiclass classification. The pre-trained ConvMixer model outperformed the other four models in classifying. As per the performance observations, there was 97.1% accuracy for normal and COVID-19 + pneumonia-infected lungs, 98% accuracy for normal and COVID-19 infected lungs, 82% accuracy for normal + bacterial + viral infected lungs, and 98% accuracy for normal + pneumonia infected lungs. The DL models performed better than the ML models for binary and multiclass classification. The performance of these studied models was tried on other CXR image databases. Conclusion The suggested network effectively detected COVID-19 and different types of pneumonia by using CXR imagery. This could help medical sciences for timely and accurate diagnoses of the cases through bioimaging technology and the use of high-end bioinformatics tools.
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Affiliation(s)
- Madhumita Pal
- Department of Electrical Engineering, Government College of Engineering,
Keonjhar, Odisha, India
| | - Ranjan K. Mohapatra
- Department of Chemistry, Government College of Engineering,
Keonjhar, 758 002, Odisha, India
| | - Ashish K. Sarangi
- Department of Chemistry, School of Applied Sciences, Centurion University of Technology and Management, Balangir, Odisha, India
| | - Alok Ranjan Sahu
- Department of Botany, Vikash Degree College, Barahaguda, Canal Chowk,
Bargarh, Odisha, India
| | - Snehasish Mishra
- School of Biotechnology, Campus-11, KIIT Deemed-to-be-University,
Bhubaneswar, Odisha, India
| | - Alok Patel
- Department of Civil Engineering, Government College of Engineering, Keonjhar, Odisha, India
| | - Sushil Kumar Bhoi
- Department of Electrical Engineering, Government College of Engineering Kalahandi, Kalahandi, Bhawanipatna, 766 003, Odisha, India
| | - Ashraf Y. Elnaggar
- Department of Food Sciences and Nutrition, College of Science, Taif University, Taif, Saudi Arabia
| | - Islam H. El Azab
- Department of Food Sciences and Nutrition, College of Science, Taif University, Taif, Saudi Arabia
| | - Mohammed Alissa
- Department of Medical Laboratory, College of Applied Medical Sciences, Prince Sattam bin Abdulaziz University,
Al-Kharj, Saudi Arabia
| | - Salah M. El-Bahy
- Department of Chemistry, Turabah University College, Taif University, Taif, Saudi Arabia
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Biswas S, Biswas S, PadmaPriya G, Kaur J, Pramanik A, Islam F, Tariq F, Imran A, Shah MA. Role of nutraceuticals in viral infections as immunomodulators: A comprehensive review. EFOOD 2024; 5. [DOI: 10.1002/efd2.70000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Accepted: 08/06/2024] [Indexed: 01/05/2025] Open
Abstract
AbstractNutraceuticals are dietary supplements produced from food sources that are intended to improve health through immune system modulation or by helping to prevent and treat a variety of ailments. Their anti‐inflammatory, immunomodulatory, and antioxidant qualities are well recognized. In certain instances, they even show direct microbiological efficacy against viral infections. Because of their special capacity, they may be able to help slow the spread and effects of very infectious illnesses, such as pandemics like COVID‐19. Nutraceuticals work well against viral infections because of a number of intricate processes. Reducing the harm that infections do to the immune system is one of the main effects. Nutraceuticals have the power to stimulate and activate the immune system, improving the body's capacity to identify and eliminate infections. Additionally, they are essential in reducing oxidative damage, which can result in serious consequences and is frequently intensified during viral infections. Nutraceuticals also strengthen immunity by promoting regulatory T cell differentiation and proliferation, which is crucial for preserving immune system homeostasis and limiting hyperinflammatory reactions. They control the production of proinflammatory cytokines, which helps to avoid cytokine storms during viral infections that may seriously harm tissue. This regulation lowers the danger of hyperinflammation and enhances overall results by supporting a balanced immune response. Through a number of biochemical mechanisms, nutraceuticals can strengthen the body's defenses against viral infections. They promote a more effective and efficient immune response by regulating immune cell activities, oxidative stress reduction, and antioxidant pathway activation. Furthermore, by interacting with different cellular signaling pathways, nutraceuticals can affect the synthesis and function of important immune components. This study clarifies the molecular processes behind the immunomodulatory effects of nutraceuticals, highlighting their crucial role in both treating and preventing viral infections.
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Affiliation(s)
- Sunanda Biswas
- Department of Food & Nutrition Acharya Prafulla Chandra College Kolkata West Bengal India
| | - Souti Biswas
- Department of Pediatrics Barasat District Hospital Kolkata West Bengal India
| | - Gopalakrishnan PadmaPriya
- Department of Chemistry and Biochemistry School of Sciences, JAIN (Deemed to be University) Bangalore Karnataka India
| | - Jaspreet Kaur
- Department of Nutrition and Dietetics Chandigarh Group of Colleges Mohali Punjab India
| | - Atreyi Pramanik
- School of Applied and Life Sciences, Division of Research and Innovation Uttaranchal University Dehradun Uttarakhand India
| | - Fakhar Islam
- Department of Food Sciences Government College University Faisalabad Faisalabad Pakistan
- Department of Clinical Nutrition NUR International University Lahore Pakistan
| | - Fatima Tariq
- Department of Clinical Nutrition NUR International University Lahore Pakistan
| | - Ali Imran
- Department of Food Sciences Government College University Faisalabad Faisalabad Pakistan
| | - Mohd Asif Shah
- Department of Economics Kardan University Kabul Afghanistan
- Division of Research and Development Lovely Professional University Phagwara Punjab India
- Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology Chitkara University Rajpura Punjab India
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Mohapatra RK, Kandi V, Gaidhane AM, Zahiruddin QS, Rustagi S, Satapathy P, Mishra S, Tuglo LS. Global domination of the recently VoI-classified 'JN.1′ outcompeting other variants – Comparing the vaccines’ efficacy. CLINICAL INFECTION IN PRACTICE 2024; 22:100358. [DOI: 10.1016/j.clinpr.2024.100358] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2025] Open
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Mohapatra RK, Mahal A, Mishra S, Dash G, Tuglo LS, Kandi V. Current Surge of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Variants in China Could Be Threatening as the Asian Games 2023 Flags Off in September: Foolproof Cautionary Measures Are Suggested. Cureus 2023; 15:e45591. [PMID: 37868556 PMCID: PMC10587912 DOI: 10.7759/cureus.45591] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/20/2023] [Indexed: 10/24/2023] Open
Abstract
Despite normalcy having almost returned in the lives of people throughout the world post-coronavirus disease-19 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), the danger still looms over the fears of development and propagation of a newer SARS-CoV-2 variant. The movement of people globally has reached the pre-pandemic level, and this augmentation increased surveillance regarding the emergence of lethal SARS-CoV-2 variants. International sports events are among the potential avenues where the virus could cause serious impact. Therefore, the organization of such events should be planned and executed meticulously to avoid viral transmission and minimize the health effects of infections on the sportspersons and the local people. Additionally, there could be dissemination of the infections to the native countries of the participants and visitors while they return to their homes. Through this editorial, we prompt caution to the organizers and the event-hosting nation's administration regarding the potential threat and suggest measures to avoid any medical emergencies related to COVID-19.
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Affiliation(s)
| | - Ahmed Mahal
- Medical Biochemical Analysis, College of Health Technology, Cihan University-Erbil, Erbil, IRQ
| | | | | | - Lawrence S Tuglo
- Nutrition and Dietetics, University of Health and Allied Sciences, Ho, GHA
| | - Venkataramana Kandi
- Clinical Microbiology, Prathima Institute of Medical Sciences, Karimnagar, IND
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Satapathy BS, Pattnaik G, Sahoo RN, Pattanaik S, Sarangi AK, Kandi V, Mishra S, Rabaan AA, Mohanty A, Sah R, Mohapatra RK. COVID-19 vaccines and their underbelly: Are we going the right way? Health Sci Rep 2023; 6:e1540. [PMID: 37670844 PMCID: PMC10475498 DOI: 10.1002/hsr2.1540] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 08/15/2023] [Accepted: 08/17/2023] [Indexed: 09/07/2023] Open
Abstract
Background Historically, a critical aetiological agent of health concern stays till eternity after its discovery, so shall it be with the COVID-19 outbreak. It has transformed human life to a 'new normal' with huge tolls on the social, psychological, intellectual and financial spheres. Aim This perspective aimed to collate numerous reported COVID-19 vaccine-associated adverse events and the predisposing factors. It focussed on the efficacy of mix-n-match (cocktail) vaccines to effectively counter COVID-19 infection to facilitate future research and possible interventions. Material and Methods Databases like Scopus, Pubmed and the Web-of-science were searched for published literature on 'adverse events associated with COVID-19 vaccine'. The reports and updates from health agencies like the WHO and CDC were also considered for the purpose. The details with respect to the adverse events associated with COVID-19 vaccination and the predisposing factors were compiled to obtain insights and suggest possible future directions in vaccine research. Results India stood strong to manage its health resources in time and turned into a dominant global vaccine supplier at a time when healthcare infrastructure of many countries was still significantly challenged. Developing indigenous vaccines and the vaccination drive in India were its major achievements during the second and the subsequent COVID-19 waves. The fully indigenous Covaxin vaccine, primarily as an emergency intervention, was successfully rapidly launched. Similar such vaccines for emergency use were developed elsewhere as well. However, all of these reached the marketplace with a 'emergency use only' tag, without formal clinical trials and other associated formalities to validate and verify them as these would require much longer incubation time before they are available for human use. Discussion Many adverse events associated with either the first or the second/booster vaccination doses were reported. Evidently, these associated adverse events were considered as 'usually rare' or were often underreported. Without the additional financial or ethical burden on the vaccine companies, fortunately, the Phase IV (human) clinical trials of their manufactured vaccines are occurring by default as the human population receives these under the tag 'emergency use'. Thus, focused and collaborative strategies to unveil the molecular mechanisms in vaccine-related adverse events in a time-bound manner are suggested. Conclusion Reliable data particularly on the safety of children is lacking as majority of the current over-the-counter COVID-19 vaccines were for emergency use. Many of these were still in their Phase III and Phase IV trials. The need for a mutant-proof, next-gen COVID-19 vaccine in the face of vaccine-associated adverse events is opined.
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Affiliation(s)
- Bhabani Sankar Satapathy
- School of Pharmaceutical SciencesSiksha O Anusandhan Deemed to be UniversityBhubaneswarOdishaIndia
| | - Gurudutta Pattnaik
- School of Pharmaceutical SciencesCenturion University of Technology and ManagementAlluri NagarOdishaIndia
| | - Rudra Narayan Sahoo
- School of Pharmaceutical SciencesSiksha O Anusandhan Deemed to be UniversityBhubaneswarOdishaIndia
| | - Sovan Pattanaik
- School of Pharmaceutical SciencesSiksha O Anusandhan Deemed to be UniversityBhubaneswarOdishaIndia
| | - Ashish K. Sarangi
- Department of ChemistryCenturion University of Technology and ManagementAlluri NagarOdishaIndia
| | - Venkataramana Kandi
- Department of MicrobiologyPrathima Institute of Medical SciencesKarimnagarTelanganaIndia
| | - Snehasish Mishra
- School of BiotechnologyCampus‐11, KIIT Deemed‐to‐be‐UniversityBhubaneswarOdishaIndia
| | - Ali A. Rabaan
- Molecular Diagnostic LaboratoryJohns Hopkins Aramco HealthcareDhahranSaudi Arabia
- College of MedicineAlfaisal UniversityRiyadhSaudi Arabia
- Department of Public Health and NutritionThe University of HaripurHaripurPakistan
| | - Aroop Mohanty
- Department of Clinical MicrobiologyAll India Institute of Medical SciencesGorakhpurUttar PradeshIndia
| | - Ranjit Sah
- Department of MicrobiologyTribhuvan University Teaching HospitalKathmanduNepal
- Department of MicrobiologyDr. D.Y Patil Medical College, Hospital and Research Center, Dr. D.Y. Patil VidyapeethPuneIndia
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Mohapatra RK, Mahal A, Mishra S, Rabaan AA, Sah R. Possible threat of the Omicron subvariant BF.7 to FIH Hockey World Cup 2023 in particular and the South-East Asia Region in general. Int J Surg 2023; 109:646-647. [PMID: 37093101 PMCID: PMC10389417 DOI: 10.1097/js9.0000000000000241] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Accepted: 01/16/2023] [Indexed: 04/25/2023]
Affiliation(s)
- Ranjan K Mohapatra
- Department of Chemistry, Government College of Engineering, Keonjhar, India
| | - Ahmed Mahal
- Department of Medical Biochemical Analysis, College of Health Technology, Cihan University, Erbil, Kurdistan Region, Iraq
| | - Snehasish Mishra
- School of Biotechnology, Campus-11, KIIT Deemed-to-be-University, Bhubaneswar, Odisha, India
| | - Ali A Rabaan
- Molecular Diagnostic Laboratory, Johns Hopkins Aramco Healthcare, Dhahran, Saudi Arabia
- College of Medicine, Alfaisal University, Riyadh, Saudi Arabia
- Department of Public Health and Nutrition, The University of Haripur, Haripur, Pakistan
| | - Ranjit Sah
- Tribhuvan University Teaching Hospital, Institute of Medicine, Kathmandu, Nepal
- Dr. D.Y. Patil Medical College, Hospital and Research Centre, Dr. D.Y. PatilVidyapeeth, Pune, Maharashtra, India
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