Induction of Oxidative Stress and Antioxidative Mechanisms in Arabidopsis thaliana after Uranium Exposure at pH 7.5

Cadmium accumulation and isotope fractionation in typical protozoa Tetrahymena: A new perspective on remediation of Cd pollution in wastewater

Cadmium (Cd) pollution threatens water safety and human health, which has raised serious public concern. Tetrahymena is a model protozoan, possessing the potential to remediate Cd contaminated water given the rapid expression of thiols. However, the mechanism of Cd accumulation in Tetrahymena has not been well understood, which hinders its application in environmental remediation. This study elucidated the pathway of Cd accumulation in Tetrahymena using Cd isotope fractionation. Our results showed that Tetrahymena preferentially absorb light Cd isotopes, with Δ^114/110Cd_{Tetrahymena-solution} = -0.20 ± 0.02‰ ∼ - 0.29 ± 0.02‰, which implies that the intracellular Cd is probably in the form of Cd-S. The fractionation generated by Cd complexation with thiols is constant (Δ^114/110Cd_{Tetrahymena-remaining solution} ∼ -0.28 ± 0.02‰), which is not affected by the concentrations of Cd in intracellular and culture medium, nor by the physiological changes in cells. Furthermore, the detoxification process of Tetrahymena results in an increase in cellular Cd accumulation from 11.7% to 23.3% with the elevated Cd concentrations in batch Cd stress culture experiments. This study highlights the promising application of Cd isotope fractionation in Tetrahymena for the remediation of heavy metal pollution in water.

A comprehensive assessment of Yarrowia lipolytica and its interactions with metals: Current updates and future prospective

The non-conventional yeast Yarrowia lipolytica has been popular as a model system for understanding biological processes such as dimorphism and lipid accumulation. The organism can efficiently utilize hydrophobic substrates (hydrocarbons and triglycerides) thereby rendering it relevant in bioremediation of oil polluted environments. The current review focuses on the interactions of this fungus with metal pollutants and its potential application in bioremediation of metal contaminated locales. This fungus is intrinsically equipped with a variety of physiological and biochemical features that enable it to tide over stress conditions induced by the presence of metals. Production of enzymes such as phosphatases, reductases and superoxide dismutases are worth a special mention. In the presence of metals, levels of inherently produced metal binding proteins (metallothioneins) and the pigment melanin are seen to be elevated. Morphological alterations with respect to biofilm formation and dimorphic transition from yeast to mycelial form are also induced by certain metals. The biomass of Y. lipolytica is inherently important as a biosorbent and cell surface modification, process optimization or whole cell immobilization techniques have aided in improving this capability. In the presence of metals such as mercury, cadmium, copper and uranium, the culture forms nanoparticulate deposits. In addition, on account of its intrinsic reductive ability, Y. lipolytica is being exploited for synthesizing nanoparticles of gold, silver, cadmium and selenium with applications as antimicrobial compounds, location agents for bioimaging and as feed supplements. This versatile organism thus has great potential in interacting with various metals and addressing problems related to their pollutant status.

RETRACTED: Cytotoxicity and genotoxicity evaluation of polystyrene microplastics on Vicia faba roots

This article has been retracted: please see Elsevier Policy on Article Withdrawal (https://www.elsevier.com/about/our-business/policies/article-withdrawal). This article has been retracted at the request of the Editors and Corresponding Author. The authors have plagiarized part of a paper that had already appeared in Environmental and Experimental Botany, 179 (2020) 104227, https://doi.org/10.1016/j.envexpbot.2020.104227. One of the conditions of submission of a paper for publication is that authors declare explicitly that their work is original and has not appeared in a publication elsewhere. Re-use of any data should be appropriately cited. As such this article represents a severe abuse of the scientific publishing system. The scientific community takes a very strong view on this matter and apologies are offered to readers of the journal that this was not detected during the submission process.

Uranium (U) source, speciation, uptake, toxicity and bioremediation strategies in soil-plant system: A review

Uranium(U), a highly toxic radionuclide, is becoming a great threat to soil health development, as returning nuclear waste containing U into the soil systems is increased. Numerous studies have focused on: i) tracing the source in U contaminated soils; ii) exploring U geochemistry; and iii) assessing U phyto-uptake and its toxicity to plants. Yet, there are few literature reviews that systematically summarized the U in soil-plant system in past decade. Thus, we present its source, geochemical behavior, uptake, toxicity, detoxification, and bioremediation strategies based on available data, especially published from 2018 to 2021. In this review, we examine processes that can lead to the soil U contamination, indicating that mining activities are currently the main sources. We discuss the relationship between U bioavailability in the soil-plant system and soil conditions including redox potential, soil pH, organic matter, and microorganisms. We then review the soil-plant transfer of U, finding that U mainly accumulates in roots with a quite limited translocation. However, plants such as willow, water lily, and sesban are reported to translocate high U levels from roots to aerial parts. Indeed, U does not possess any identified biological role, but provokes numerous deleterious effects such as reducing seed germination, inhibiting plant growth, depressing photosynthesis, interfering with nutrient uptake, as well as oxidative damage and genotoxicity. Yet, plants tolerate U toxicity via various defense strategies including antioxidant enzymes, compartmentalization, and phytochelatin. Moreover, we review two biological remediation strategies for U-contaminated soil: (i) phytoremediation and (ii) microbial remediation. They are quite low-cost and eco-friendly compared with traditional physical or chemical remediation technologies. Finally, we conclude some promising research challenges regarding U biogeochemical behavior in soil-plant systems. This review, thus, further indicates that the combined application of U low accumulators and microbial inoculants may be an effective strategy for the bioremediation of U-contaminated soils.

Uranium(VI) toxicity in tobacco BY-2 cell suspension culture - A physiological study

For the first time, the physiological and cellular responses of Nicotiana tabacum (BY-2) cells to uranium (U) as an abiotic stressor were studied using a multi-analytic approach that combined biochemical analysis, thermodynamic modeling and spectroscopic studies. The goal of this investigation was to determine the U threshold toxicity in tobacco BY-2 cells, the influence of U on the homeostasis of micro-macro essential nutrients, as well as the effect of Fe starvation on U bioassociation in cultured BY-2 cells. Our findings demonstrated that U interferes with the homeostasis of essential elements. The interaction of U with BY-2 cells confirmed both time- and concentration-dependent kinetics. Under Fe deficiency, a reduced level of U was detected in the cells compared to Fe-sufficient conditions. Interestingly, blocking the Ca channels with gadolinium chloride caused a decrease in U concentration in the BY-2 cells. Spectroscopic studies evidenced changes in the U speciation in the culture media with increasing exposure time under both Fe-sufficient and deficient conditions, leading us to conclude that different stress response reactions are related to Fe metabolism. Moreover, it is suggested that U toxicity in BY-2 cells is highly dependent on the existence of other micro-macro elements as shown by negative synergistic effects of U and Fe on cell viability.

Unraveling response mechanism of photosynthetic metabolism and respiratory metabolism to uranium-exposure in Vicia faba

As a natural radionuclide, uranium (U) has obvious phytotoxicity, the purpose of this study is to unravel the response mechanism of U on photosynthetic and respiratory metabolism in plants. Therefore, 14-day-old Vicia faba seedlings were exposed to 0-25 μM U during 72 h. U effects on growth parameters, physiological parameters of plants, and potential phytotoxicity mechanism were investigated by physiological analysis, and metabolome and transcriptome data. U significantly inhibited photosynthesis and respiration of plants. In metabolome analysis, 53 metabolites related to carbohydrate metabolism were identified (13 up-regulated, 12 down-regulated). In transcriptome analysis, U significantly inhibited the expression of photoreactive electron transport chain (up: 0; down: 31), Calvin cycle (up: 0; down: 12) and photorespiration pathway genes (up: 0; down: 8). U significantly inhibited the expression of cellular energy metabolic pathways genes (e.g., glycolysis, TCA cycle, and oxidative phosphorylation pathways) (up 8, down 18). We concluded that U inhibited the expression of genes involved in the photosynthetic metabolic pathway, which caused the decrease of photosynthetic rate. Meanwhile, U inhibited the expression of the electron transport chain genes in the mitochondrial oxidative phosphorylation pathway, which leads to the abnormal energy supply of cells and the inhibition of root respiration rate.

Genomic and functional insights into the adaptation and survival of Chryseobacterium sp. strain PMSZPI in uranium enriched environment

Metal enriched areas represent important and dynamic microbiological ecosystems. In this study, the draft genome of a uranium (U) tolerant bacterium, Chryseobacterium sp. strain PMSZPI, isolated from the subsurface soil of Domiasiat uranium ore deposit in Northeast India, was analyzed. The strain revealed a genome size of 3.8 Mb comprising of 3346 predicted protein-coding genes. The analysis indicated high abundance of genes associated with metal resistance and efflux, transporters, phosphatases, antibiotic resistance, polysaccharide synthesis, motility, protein secretion systems, oxidoreductases and DNA repair. Comparative genomics with other closely related Chryseobacterium strains led to the identification of unique inventory of genes which were of adaptive significance in PMSZPI. Consistent with the genome analysis, PMSZPI showed superior tolerance to uranium and other heavy metals. The metal exposed cells exhibited transcriptional induction of metal translocating P_IB ATPases suggestive of their involvement in metal resistance. Efficient U binding (~90% of 100 μM U) and U bioprecipitation (~93-94% of 1 mM U at pH 5, 7 and 9) could be attributed as uranium tolerance strategies in PMSZPI. The strain demonstrated resistance to a large number of antibiotics which was in agreement with in silico prediction. Reduced gliding motility in the presence of cadmium and uranium, enhanced biofilm formation on uranium exposure and tolerance to 1.5 kGy of ⁶⁰Co gamma radiation were perceived as adaptive responses in PMSZPI. Overall, the positive correlation observed between uranium/metal tolerance abilities predicted using genome analysis and the functional characterization reinforced the multifaceted adaptation strategies employed by PMSZPI for its survival in the soil of uranium ore deposit comprising of high concentrations of uranium and other heavy metals.

Impact of uranium exposure on marine yeast, Yarrowia lipolytica: Insights into the yeast strategies to withstand uranium stress

A marine yeast, Yarrowia lipolytica, was evaluated for morphological, physiological and biochemical responses towards uranium (U) exposure at pH 7.5. The yeast revealed biphasic U binding - a rapid biosorption resulting in ∼35% U binding within 15-30 min followed by a slow biomineralization process, binding up to ∼45.5% U by 24 h on exposure to 50 μM of uranyl carbonate. Scanning electron microscopy coupled with Energy Dispersive X-ray spectroscopy analysis of 24 h U challenged cells revealed the deposition of uranyl precipitates due to biomineralization. The loss of intracellular structures together with surface and subcellular localization of uranyl precipitates in 24 h U exposed cells were visualized by transmission electron microscopy. Cells treated with 50 μM U exhibited membrane permeabilization which was higher at 200 μM U. Enhanced reactive oxygen species (ROS) accumulation and lipid peroxidation, transient RNA degradation and protein oxidation were observed in U exposed cells. High superoxide dismutase levels coupled with uranium binding and bioprecipitation possibly helped in counteracting U stress in 50 μM U treated cells. Resistance to U toxicity apparently developed under prolonged uranyl (50 μM) incubations. However, cells could not cope up with toxicity at 200 μM U due to impairment of resistance mechanisms.

Uranium accumulation and its phytotoxicity symptoms in Pisum sativum L

Environmental contamination by uranium (U) and other radionuclides is a serious problem worldwide, especially due to, e.g. mining activities. Ultimate accumulation of released U in aquatic systems and soils represent an escalating problem for all living organisms. In order to investigate U uptake and its toxic effects on Pisum sativum L., pea plantlets were hydroponically grown and treated with different concentrations of U. Five days after exposure to 25 and 50 μM U, P. sativum roots accumulated 2327.5 and 5559.16 mg kg-1 of U, respectively, while in shoots concentrations were 11.16 and 12.16 mg kg-1, respectively. Plants exposed to both U concentrations showed reduced biomass of shoots and reduced content of photosynthetic pigments (total chlorophyll and carotenoids) relative to control. As a biomarker of oxidative stress, lipid peroxidation (LPO) levels were determined, while antioxidative response was determined by catalase (CAT) and glutathione reductase (GR) activities as well as cysteine (Cys) and non-protein thiol (NP-SH) concentrations, both in roots and shoots. Both U treatments significantly increased LPO levels in roots and shoots, with the highest level recorded at 50 μM U, 50.38% in shoots and 59.9% in roots relative to control. U treatment reduced GR activity in shoots, while CAT activity was increased only in roots upon treatment with 25 μM U. In pea roots, cysteine content was significantly increased upon treatment with both U concentrations, for 19.8 and 25.5%, respectively, compared to control plants, while NP-SH content was not affected by the applied U. This study showed significant impact of U on biomass production and biochemical markers of phytotoxicity in P. sativum, indicating presence of oxidative stress and cellular redox imbalance in roots and shoots. Obtained tissue-specific response to U treatment showed higher sensitivity of shoots compared to roots. Much higher accumulation of U in pea roots compared to shoots implies potential role of this species in phytoremediation process.

Development of a metalloproteomic approach to analyse the response of Arabidopsis cells to uranium stress

Elaboration of a top-down proteomic, biochemical and ionoproteomic toolbox to gain insights into the impact of uranyl (U) on Arabidopsis cells.

Effects of childhood exposure to PM2.5 in a Memphis pediatric asthma cohort

The effects of childhood exposure to ambient air pollution and their influences on healthcare utilization and respiratory outcomes in Memphis pediatric asthma cohort are still unknown. This study seeks to (1) investigate individual-level associations between asthma and exposure measures in high asthma rate and low asthma rate areas and (2) determine factors that influence asthma at first year of a child's life, first 2 years, first 5 years, and during their childhood. Datasets include physician-diagnosed asthma patients, on-road and individual PM_2.5 emissions, and high-resolution spatiotemporal PM_2.5 estimates. Spatial analytical and logistic regression models were used to analyze the effects of childhood exposure on outcomes. Increased risk was associated with African American (AA) (odds ratio (OR) = 3.09, 95% confidence interval (CI) 2.80-3.41), aged < 5 years old (OR = 1.31, 95% 1.17-1.47), public insurance (OR = 2.80, 95% CI 2.60-3.01), a 2.5-km radius from on-road emission sources (OR = 3.06, 95% CI 2.84-3.30), and a 400-m radius from individual PM_2.5 sources (OR = 1.33, 95% CI 1.25-1.41) among the cohort with residence in high asthma rate areas compared to low asthma rates areas. A significant interaction was observed between race and insurance with the odds of AA being approximately five times (OR = 4.68, 95% CI 2.23-9.85), public insurance being about three times (OR = 2.65, 95% CI 1.68-4.17), and children in their first 5 years of life have more hospital visits than other age groups. Findings from this study can guide efforts to minimize emissions, manage risk, and design interventions to reduce disease burden.

Genetic and physiological effects of the natural radioactive gas radon on the epiphytic plant Tillandsia brachycaulos

Radon (²²²Rn) is the most abundant natural radioactive gas in nature and triggers carcinogenesis. Few reports exist on whether radon can damage plants as it does animals. Therefore, we chose Tillandsia brachycaulos, a common indicator plant, as the material to detect the physiological and genetic changes caused by radon. With an increase in radon concentration, DNA indices (tail length, tail DNA, tail moment and Olive tail moment) from the comet assay and malondialdehyde (MDA) content increased significantly, suggesting that T. brachycaulos inevitably suffered from radiation damage. However, neither the leaf relative conductivity nor the soluble protein content changed significantly with radon fumigation, and no dose-dependent effect existed between the chlorophyll content and radon concentration, indicating that T. brachycaulos had resistance to radon stress. Foliar trichomes most likely excluded the pollutant from plants because DNA damage in T. brachycaulos with trichomes manually removed was considerably greater than that with trichomes. Moreover, the antioxidant enzyme system further reduced the damage of radon to plants because the activity of superoxide dismutase (SOD) increased significantly with the radon concentration.