1
|
Ni H, Song R, Liu B, Hu H, Liu J, Wang Q, Wang R, Mao P, Jia S. Temporal dynamics of chloroplast biogenesis revealed initiation of photosynthesis-related gene expression and protein complexes during alfalfa seed germination. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 213:108868. [PMID: 38917738 DOI: 10.1016/j.plaphy.2024.108868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 06/02/2024] [Accepted: 06/20/2024] [Indexed: 06/27/2024]
Abstract
The chloroplast biogenesis occurs in cotyledon during alfalfa seed germination before true leaf formation, and is extremely important for the followed plant development and growth. In this study, we conducted a simulation of alfalfa seed germination in the soil by using tin foil and focused on 10 pivotal time points of chloroplast biogenesis in cotyledons before and after light exposure, which showed significant differences in multispectral images, and covered the whole process of chloroplast biogenesis from proplastid, etioplast to mature chloroplast. We revealed three phases that referred to the programmed involvements of photosynthesis promotion, ultrastructure maturity, transcriptomic expression, and protein complex construction, and observed distinct transcriptional expressions of genes from nuclear and chloroplast genomes. In phase I at dark germination before light exposure, chloroplast-encoded genes showed up-regulated expressions together with the importation of chloroplast proteins. In phase II for the first day after light exposure, nuclear-encoded genes' expressions were initiated at 2 h after light exposure (E2h), followed by swift assembly of chloroplast thylakoid membrane protein complexes, and roaring Fv/Fm and contents of chlorophyll a, chlorophyll b and carotenoid. The initiation at E2h was pronounced by the observation of gradual accumulation of single lamella, and facilitated the formation of granum stacks (thylakoid) at E8h in phase II. In phase III from the second day after light exposure, chloroplast became gradually complete with the fully established photosynthetic capacity. Altogether, our results layed a theoretical foundation for enhancing potential photosynthetic efficiency in alfalfa and related species.
Collapse
Affiliation(s)
- Haoran Ni
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Rui Song
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Bei Liu
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Hao Hu
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Junze Liu
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Qing Wang
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Run Wang
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China
| | - Peisheng Mao
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
| | - Shangang Jia
- College of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
| |
Collapse
|
2
|
Zeng H, Yi K, Yang S, Jiang Y, Mao P, Yu Y, Feng Y, Dong Y, Dou L, Li M. Photosynthetic performance of glumes of oat spikelets is more stable for grain-filling stage under drought stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 214:108890. [PMID: 38950462 DOI: 10.1016/j.plaphy.2024.108890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 06/12/2024] [Accepted: 06/26/2024] [Indexed: 07/03/2024]
Abstract
Drought stress affects plant photosynthesis, leading to a reduction in the quality and yield of crop production. Non-foliar organs play a complementary role in photosynthesis during plant growth and development and are important sources of energy. However, there are limited studies on the performance of non-foliar organs under drought stress. The photosynthetic-responsive differences of oat spikelet organs (glumes, lemmas and paleas) and flag leaves to drought stress during the grain-filling stage were examined. Under drought stress, photosynthetic performance of glume is more stable. Intercellular CO2 concentration (Ci), chlorophyll b, maximum photochemical efficiency of photosystem II. (Fv/Fm), and electron transport rate (ETR) were significantly higher in the glume compared to the flag leaf. The transcriptome data revealed that stable expression of the RCCR gene under drought stress was the main reason for maintaining higher chlorophyll content in the glume. Additionally, no differential expression genes (DEGs) related to Photosystem Ⅰ (PSI) reaction centers were found, and drought stress primarily affects the Photosystem II (PSII) reaction center. In spikelets, the CP43 and CP47 subunits of PSII and the AtpB subunit of ATP synthase were increased on the thylakoid membrane, contributing to photosynthetic stabilisation of spikelets as a means of supplementing the limited photosynthesis of the leaves under drought stress. The results enhanced understanding of the photosynthetic performance of oat spikelet during the grain-filling stage, and also provided an important basis on improving the photosynthetic capacity of non-foliar organs for the selection and breeding new oat varieties with high yield and better drought resistance.
Collapse
Affiliation(s)
- Hanguo Zeng
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Kun Yi
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Shuangfeng Yang
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Yiwei Jiang
- Department of Agronomy, Purdue University, West Lafayette, IN, 47907, USA
| | - Peisheng Mao
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Yang Yu
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Yuan Feng
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Yongxiang Dong
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Liru Dou
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China
| | - Manli Li
- Forage Seed Laboratory, College of Grassland Science and Technology, China Agricultural University, Beijing, 1000101, China.
| |
Collapse
|
3
|
Li B, Jia Y, Xu L, Zhang S, Long Z, Wang R, Guo Y, Zhang W, Jiao C, Li C, Xu Y. Transcriptional convergence after repeated duplication of an amino acid transporter gene leads to the independent emergence of the black husk/pericarp trait in barley and rice. PLANT BIOTECHNOLOGY JOURNAL 2024; 22:1282-1298. [PMID: 38124464 PMCID: PMC11022822 DOI: 10.1111/pbi.14264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 11/09/2023] [Accepted: 11/25/2023] [Indexed: 12/23/2023]
Abstract
The repeated emergence of the same trait (convergent evolution) in distinct species is an interesting phenomenon and manifests visibly the power of natural selection. The underlying genetic mechanisms have important implications to understand how the genome evolves under environmental challenges. In cereal crops, both rice and barley can develop black-coloured husk/pericarp due to melanin accumulation. However, it is unclear if this trait shares a common origin. Here, we fine-mapped the barley HvBlp gene controlling the black husk/pericarp trait and confirmed its function by gene silencing. The result was further supported by a yellow husk/pericarp mutant with deletion of the HvBlp gene, derived from gamma ray radiation of the wild-type W1. HvBlp encodes a putative tyrosine transporter homologous to the black husk gene OsBh4 in rice. Surprisingly, synteny and phylogenetic analyses showed that HvBlp and OsBh4 belonged to different lineages resulted from dispersed and tandem duplications, respectively, suggesting that the black husk/pericarp trait has emerged independently. The dispersed duplication (dated at 21.23 MYA) yielding HvBlp occurred exclusively in the common ancestor of Triticeae. HvBlp and OsBh4 displayed converged transcription in husk/pericarp tissues, contributing to the black husk/pericarp trait. Further transcriptome and metabolome data identified critical candidate genes and metabolites related to melanin production in barley. Taken together, our study described a compelling case of convergent evolution resulted from transcriptional convergence after repeated gene duplication, providing valuable genetic insights into phenotypic evolution. The identification of the black husk/pericarp genes in barley also has great potential in breeding for stress-resilient varieties with higher nutritional values.
Collapse
Affiliation(s)
- Bo Li
- Hubei Key Laboratory of Food Crop Germplasm and Genetic Improvement & Key Laboratory of Ministry of Agriculture and Rural Affairs for Crop Molecular Breeding, Food Crops InstituteHubei Academy of Agricultural SciencesWuhanChina
| | - Yong Jia
- Western Crop Genetics Alliance, Future Food Institute, Western Australian State Agricultural Biotechnology Centre, College of Science, Health, Engineering and EducationMurdoch UniversityMurdochWestern AustraliaAustralia
| | - Le Xu
- Hubei Collaborative Innovation Centre for the industrialization of Major Grain Crops, College of AgricultureYangtze UniversityJingzhouChina
| | - Shuo Zhang
- Hubei Key Laboratory of Food Crop Germplasm and Genetic Improvement & Key Laboratory of Ministry of Agriculture and Rural Affairs for Crop Molecular Breeding, Food Crops InstituteHubei Academy of Agricultural SciencesWuhanChina
| | - Zhoukai Long
- Hubei Collaborative Innovation Centre for the industrialization of Major Grain Crops, College of AgricultureYangtze UniversityJingzhouChina
| | - Rong Wang
- Hubei Collaborative Innovation Centre for the industrialization of Major Grain Crops, College of AgricultureYangtze UniversityJingzhouChina
| | - Ying Guo
- Hubei Key Laboratory of Food Crop Germplasm and Genetic Improvement & Key Laboratory of Ministry of Agriculture and Rural Affairs for Crop Molecular Breeding, Food Crops InstituteHubei Academy of Agricultural SciencesWuhanChina
| | - Wenying Zhang
- Hubei Collaborative Innovation Centre for the industrialization of Major Grain Crops, College of AgricultureYangtze UniversityJingzhouChina
| | - Chunhai Jiao
- Hubei Key Laboratory of Food Crop Germplasm and Genetic Improvement & Key Laboratory of Ministry of Agriculture and Rural Affairs for Crop Molecular Breeding, Food Crops InstituteHubei Academy of Agricultural SciencesWuhanChina
| | - Chengdao Li
- Western Crop Genetics Alliance, Future Food Institute, Western Australian State Agricultural Biotechnology Centre, College of Science, Health, Engineering and EducationMurdoch UniversityMurdochWestern AustraliaAustralia
- Department of Primary Industries and Regional DevelopmentSouth PerthWestern AustraliaAustralia
| | - Yanhao Xu
- Hubei Key Laboratory of Food Crop Germplasm and Genetic Improvement & Key Laboratory of Ministry of Agriculture and Rural Affairs for Crop Molecular Breeding, Food Crops InstituteHubei Academy of Agricultural SciencesWuhanChina
| |
Collapse
|
4
|
Glagoleva AY, Vikhorev AV, Shmakov NA, Morozov SV, Chernyak EI, Vasiliev GV, Shatskaya NV, Khlestkina EK, Shoeva OY. Features of Activity of the Phenylpropanoid Biosynthesis Pathway in Melanin-Accumulating Barley Grains. FRONTIERS IN PLANT SCIENCE 2022; 13:923717. [PMID: 35898231 PMCID: PMC9310326 DOI: 10.3389/fpls.2022.923717] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 06/09/2022] [Indexed: 06/15/2023]
Abstract
Barley (Hordeum vulgare L.) grain pigmentation is caused by two types of phenolic compounds: anthocyanins (which are flavonoids) give a blue or purple color, and melanins (which are products of enzymatic oxidation and polymerization of phenolic compounds) give a black or brown color. Genes Ant1 and Ant2 determine the synthesis of purple anthocyanins in the grain pericarp, whereas melanins are formed under the control of the Blp1 gene in hulls and pericarp tissues. Unlike anthocyanin synthesis, melanin synthesis is poorly understood. The objective of the current work was to reveal features of the phenylpropanoid biosynthesis pathway functioning in melanin-accumulating barley grains. For this purpose, comparative transcriptomic and metabolomic analyses of three barley near-isogenic lines accumulating anthocyanins, melanins, or both in the grain, were performed. A comparative analysis of mRNA libraries constructed for three stages of spike development (booting, late milk, and early dough) showed transcriptional activation of genes encoding enzymes of the general phenylpropanoid pathway in all the lines regardless of pigmentation; however, as the spike matured, unique transcriptomic patterns associated with melanin and anthocyanin synthesis stood out. Secondary activation of transcription of the genes encoding enzymes of the general phenylpropanoid pathway together with genes of monolignol synthesis was revealed in the line accumulating only melanin. This pattern differs from the one observed in the anthocyanin-accumulating lines, where - together with the genes of general phenylpropanoid and monolignol synthesis pathways - flavonoid biosynthesis genes were found to be upregulated, with earlier activation of these genes in the line accumulating both types of pigments. These transcriptomic shifts may underlie the observed differences in concentrations of phenylpropanoid metabolites analyzed in the grain at a late developmental stage by high-performance liquid chromatography. Both melanin-accumulating lines showed an increased total level of benzoic acids. By contrast, anthocyanin-accumulating lines showed higher concentrations of flavonoids and p-coumaric and ferulic acids. A possible negative effect of melanogenesis on the total flavonoid content and a positive influence on the anthocyanin content were noted in the line accumulating both types of pigments. As a conclusion, redirection of metabolic fluxes in the phenylpropanoid biosynthesis pathway occurs when melanin is synthesized.
Collapse
Affiliation(s)
- Anastasiia Y. Glagoleva
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
- Kurchatov Genomics Center, ICG, SB RAS, Novosibirsk, Russia
| | - Alexander V. Vikhorev
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
| | - Nikolay A. Shmakov
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
- Kurchatov Genomics Center, ICG, SB RAS, Novosibirsk, Russia
| | - Sergey V. Morozov
- N.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Novosibirsk, Russia
| | - Elena I. Chernyak
- N.N. Vorozhtsov Novosibirsk Institute of Organic Chemistry, SB RAS, Novosibirsk, Russia
| | - Gennady V. Vasiliev
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
- Kurchatov Genomics Center, ICG, SB RAS, Novosibirsk, Russia
| | - Natalia V. Shatskaya
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
- Kurchatov Genomics Center, ICG, SB RAS, Novosibirsk, Russia
| | - Elena K. Khlestkina
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
- N.I. Vavilov All-Russian Research Institute of Plant Genetic Resources, Saint Petersburg, Russia
| | - Olesya Y. Shoeva
- Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
- Kurchatov Genomics Center, ICG, SB RAS, Novosibirsk, Russia
| |
Collapse
|