1
|
Amiri S, Vrtovec T, Mustafaev T, Deufel CL, Thomsen HS, Sillesen MH, Brandt EGS, Andersen MB, Müller CF, Ibragimov B. Reinforcement learning-based anatomical maps for pancreas subregion and duct segmentation. Med Phys 2024. [PMID: 39031886 DOI: 10.1002/mp.17300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 06/20/2024] [Accepted: 06/21/2024] [Indexed: 07/22/2024] Open
Abstract
BACKGROUND The pancreas is a complex abdominal organ with many anatomical variations, and therefore automated pancreas segmentation from medical images is a challenging application. PURPOSE In this paper, we present a framework for segmenting individual pancreatic subregions and the pancreatic duct from three-dimensional (3D) computed tomography (CT) images. METHODS A multiagent reinforcement learning (RL) network was used to detect landmarks of the head, neck, body, and tail of the pancreas, and landmarks along the pancreatic duct in a selected target CT image. Using the landmark detection results, an atlas of pancreases was nonrigidly registered to the target image, resulting in anatomical probability maps for the pancreatic subregions and duct. The probability maps were augmented with multilabel 3D U-Net architectures to obtain the final segmentation results. RESULTS To evaluate the performance of our proposed framework, we computed the Dice similarity coefficient (DSC) between the predicted and ground truth manual segmentations on a database of 82 CT images with manually segmented pancreatic subregions and 37 CT images with manually segmented pancreatic ducts. For the four pancreatic subregions, the mean DSC improved from 0.38, 0.44, and 0.39 with standard 3D U-Net, Attention U-Net, and shifted windowing (Swin) U-Net architectures, to 0.51, 0.47, and 0.49, respectively, when utilizing the proposed RL-based framework. For the pancreatic duct, the RL-based framework achieved a mean DSC of 0.70, significantly outperforming the standard approaches and existing methods on different datasets. CONCLUSIONS The resulting accuracy of the proposed RL-based segmentation framework demonstrates an improvement against segmentation with standard U-Net architectures.
Collapse
Affiliation(s)
- Sepideh Amiri
- Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
| | - Tomaž Vrtovec
- Faculty of Electrical Engineering, University of Ljubljana, Ljubljana, Slovenia
| | | | | | - Henrik S Thomsen
- Department of Radiology, Herlev Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark
| | - Martin Hylleholt Sillesen
- Department of Organ Surgery and Transplantation, and CSTAR, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark
| | | | - Michael Brun Andersen
- Department of Radiology, Herlev Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark
- Department of Clinical Medicine, Copenhagen University, Copenhagen, Denmark
| | - Christoph Felix Müller
- Department of Radiology, Herlev Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark
| | - Bulat Ibragimov
- Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
- Faculty of Electrical Engineering, University of Ljubljana, Ljubljana, Slovenia
| |
Collapse
|
2
|
Lin Z, Lei C, Yang L. Modern Image-Guided Surgery: A Narrative Review of Medical Image Processing and Visualization. SENSORS (BASEL, SWITZERLAND) 2023; 23:9872. [PMID: 38139718 PMCID: PMC10748263 DOI: 10.3390/s23249872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 11/15/2023] [Accepted: 12/13/2023] [Indexed: 12/24/2023]
Abstract
Medical image analysis forms the basis of image-guided surgery (IGS) and many of its fundamental tasks. Driven by the growing number of medical imaging modalities, the research community of medical imaging has developed methods and achieved functionality breakthroughs. However, with the overwhelming pool of information in the literature, it has become increasingly challenging for researchers to extract context-relevant information for specific applications, especially when many widely used methods exist in a variety of versions optimized for their respective application domains. By being further equipped with sophisticated three-dimensional (3D) medical image visualization and digital reality technology, medical experts could enhance their performance capabilities in IGS by multiple folds. The goal of this narrative review is to organize the key components of IGS in the aspects of medical image processing and visualization with a new perspective and insights. The literature search was conducted using mainstream academic search engines with a combination of keywords relevant to the field up until mid-2022. This survey systemically summarizes the basic, mainstream, and state-of-the-art medical image processing methods as well as how visualization technology like augmented/mixed/virtual reality (AR/MR/VR) are enhancing performance in IGS. Further, we hope that this survey will shed some light on the future of IGS in the face of challenges and opportunities for the research directions of medical image processing and visualization.
Collapse
Affiliation(s)
- Zhefan Lin
- School of Mechanical Engineering, Zhejiang University, Hangzhou 310030, China;
- ZJU-UIUC Institute, International Campus, Zhejiang University, Haining 314400, China;
| | - Chen Lei
- ZJU-UIUC Institute, International Campus, Zhejiang University, Haining 314400, China;
| | - Liangjing Yang
- School of Mechanical Engineering, Zhejiang University, Hangzhou 310030, China;
- ZJU-UIUC Institute, International Campus, Zhejiang University, Haining 314400, China;
| |
Collapse
|
3
|
Liu W, Delalibera Rodrigues R, Yan J, Zhu YT, de Freitas Pereira EJ, Li G, Zheng Q, Zhao L. Complex network-based classification of radiographic images for COVID-19 diagnosis. PLoS One 2023; 18:e0290968. [PMID: 37656697 PMCID: PMC10473542 DOI: 10.1371/journal.pone.0290968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 08/03/2023] [Indexed: 09/03/2023] Open
Abstract
In this work, we present a network-based technique for chest X-ray image classification to help the diagnosis and prognosis of patients with COVID-19. From visual inspection, we perceive that healthy and COVID-19 chest radiographic images present different levels of geometric complexity. Therefore, we apply fractal dimension and quadtree as feature extractors to characterize such differences. Moreover, real-world datasets often present complex patterns, which are hardly handled by only the physical features of the data (such as similarity, distance, or distribution). This issue is addressed by complex networks, which are suitable tools for characterizing data patterns and capturing spatial, topological, and functional relationships in data. Specifically, we propose a new approach combining complexity measures and complex networks to provide a modified high-level classification technique to be applied to COVID-19 chest radiographic image classification. The computational results on the Kaggle COVID-19 Radiography Database show that the proposed method can obtain high classification accuracy on X-ray images, being competitive with state-of-the-art classification techniques. Lastly, a set of network measures is evaluated according to their potential in distinguishing the network classes, which resulted in the choice of communicability measure. We expect that the present work will make significant contributions to machine learning at the semantic level and to combat COVID-19.
Collapse
Affiliation(s)
- Weiguang Liu
- School of Computer Science, Zhongyuan University of Technology, ZhengZhou, China
| | | | - Jianglong Yan
- Institute of Mathematics and Computer Science (ICMC), University of São Paulo (USP), São Carlos, Brazil
| | - Yu-tao Zhu
- China Branch of BRICS Institute of Future Networks, ShenZhen, China
| | | | - Gen Li
- Henan Key Laboratory on Public Opinion Intelligent Analysis, Zhongyuan University of Technology, ZhengZhou, China
| | - Qiusheng Zheng
- Henan Key Laboratory on Public Opinion Intelligent Analysis, Zhongyuan University of Technology, ZhengZhou, China
| | - Liang Zhao
- China Branch of BRICS Institute of Future Networks, ShenZhen, China
- Department of Computing and Mathematics, FFCLRP, University of São Paulo (USP), Ribeirão Preto, Brazil
| |
Collapse
|
4
|
Choudhry IA, Qureshi AN, Aurangzeb K, Iqbal S, Alhussein M. Hybrid Diagnostic Model for Improved COVID-19 Detection in Lung Radiographs Using Deep and Traditional Features. Biomimetics (Basel) 2023; 8:406. [PMID: 37754157 PMCID: PMC10526442 DOI: 10.3390/biomimetics8050406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 08/25/2023] [Accepted: 08/29/2023] [Indexed: 09/28/2023] Open
Abstract
A recently discovered coronavirus (COVID-19) poses a major danger to human life and health across the planet. The most important step in managing and combating COVID-19 is to accurately screen and diagnose affected people. The imaging technology of lung X-ray is a useful imaging identification/detection approach among them. The help of such computer-aided machines and diagnoses to examine lung X-ray images of COVID-19 instances can give supplemental assessment ideas to specialists, easing their workload to some level. The novel concept of this study is a hybridized approach merging pertinent manual features with deep spatial features for the classification of COVID-19. Further, we employed traditional transfer learning techniques in this investigation, utilizing four different pre-trained CNN-based deep learning models, with the Inception model showing a reasonably accurate result and a diagnosis accuracy of 82.17%. We provide a successful diagnostic approach that blends deep characteristics with machine learning classification to further increase clinical performance. It employs a complete diagnostic model. Two datasets were used to test the suggested approach, and it did quite well on several of them. On 1102 lung X-ray scans, the model was originally evaluated. The results of the experiments indicate that the suggested SVM model has a diagnostic accuracy of 95.57%. When compared to the Xception model's baseline, the diagnostic accuracy had risen by 17.58 percent. The sensitivity, specificity, and AUC of the proposed models were 95.37 percent, 95.39%, and 95.77%, respectively. To show the adaptability of our approach, we also verified our proposed model on other datasets. Finally, we arrived at results that were conclusive. When compared to research of a comparable kind, our suggested CNN model has a greater accuracy of classification and diagnostic effectiveness.
Collapse
Affiliation(s)
- Imran Arshad Choudhry
- Department of Computer Science, Faculty of Information Technology & Computer Science, University of Central Punjab, Lahore 54000, Pakistan
| | - Adnan N. Qureshi
- Faculty of Arts, Society and Professional Studies, Newman University, Birmingham B32 3NT, UK;
| | - Khursheed Aurangzeb
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, P.O. Box 51178, Riyadh 11543, Saudi Arabia; (K.A.); (M.A.)
| | - Saeed Iqbal
- Department of Computer Science, Faculty of Information Technology & Computer Science, University of Central Punjab, Lahore 54000, Pakistan
| | - Musaed Alhussein
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, P.O. Box 51178, Riyadh 11543, Saudi Arabia; (K.A.); (M.A.)
| |
Collapse
|
5
|
Wang L, Zhou H, Xu N, Liu Y, Jiang X, Li S, Feng C, Xu H, Deng K, Song J. A general approach for automatic segmentation of pneumonia, pulmonary nodule, and tuberculosis in CT images. iScience 2023; 26:107005. [PMID: 37534183 PMCID: PMC10391673 DOI: 10.1016/j.isci.2023.107005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 04/27/2023] [Accepted: 05/26/2023] [Indexed: 08/04/2023] Open
Abstract
Proposing a general segmentation approach for lung lesions, including pulmonary nodules, pneumonia, and tuberculosis, in CT images will improve efficiency in radiology. However, the performance of generative adversarial networks is hampered by the limited availability of annotated samples and the catastrophic forgetting of the discriminator, whereas the universality of traditional morphology-based methods is insufficient for segmenting diverse lung lesions. A cascaded dual-attention network with a context-aware pyramid feature extraction module was designed to address these challenges. A self-supervised rotation loss was designed to mitigate discriminator forgetting. The proposed model achieved Dice coefficients of 70.92, 73.55, and 68.52% on multi-center pneumonia, lung nodule, and tuberculosis test datasets, respectively. No significant decrease in accuracy was observed (p > 0.10) when a small training sample size was used. The cyclic training of the discriminator was reduced with self-supervised rotation loss (p < 0.01). The proposed approach is promising for segmenting multiple lung lesion types in CT images.
Collapse
Affiliation(s)
- Lu Wang
- Department of Library, Shengjing Hospital of China Medical University, Shenyang, Liaoning 110004, China
- School of Health Management, China Medical University, Shenyang, Liaoning 110122, China
| | - He Zhou
- School of Health Management, China Medical University, Shenyang, Liaoning 110122, China
| | - Nan Xu
- School of Health Management, China Medical University, Shenyang, Liaoning 110122, China
| | - Yuchan Liu
- Department of Radiology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, USTC Hefei, Anhui 230036, China
| | - Xiran Jiang
- School of Intelligent Medicine, China Medical University, Shenyang, Liaoning 110122, China
| | - Shu Li
- School of Health Management, China Medical University, Shenyang, Liaoning 110122, China
| | - Chaolu Feng
- Key Laboratory of Intelligent Computing in Medical Image (MIIC), Ministry of Education, Shenyang, Liaoning 110169, China
| | - Hainan Xu
- Department of Obstetrics and Gynecology, Pelvic Floor Disease Diagnosis and Treatment Center, Shengjing Hospital of China Medical University, Shenyang, Liaoning 110004, China
| | - Kexue Deng
- Department of Radiology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, USTC Hefei, Anhui 230036, China
| | - Jiangdian Song
- School of Health Management, China Medical University, Shenyang, Liaoning 110122, China
| |
Collapse
|
6
|
Application of a novel deep learning technique using CT images for COVID-19 diagnosis on embedded systems. ALEXANDRIA ENGINEERING JOURNAL 2023; 74:345-358. [PMCID: PMC10183629 DOI: 10.1016/j.aej.2023.05.036] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2023] [Revised: 04/24/2023] [Accepted: 05/08/2023] [Indexed: 11/04/2023]
Abstract
Problem A novel coronavirus (COVID-19) has created a worldwide pneumonia epidemic, and it's important to make a computer-aided way for doctors to use computed tomography (CT) images to find people with COVID-19 as soon as possible. Aim: A fully automated, novel deep-learning method for diagnosis and prognostic analysis of COVID-19 on the embedded system is presented. Methods In this study, CT scans are utilized to identify individuals with COVID-19, pneumonia, or normal class. To achieve classification two pre-trained CNN models, namely ResNet50 and MobileNetv2, which are commonly used for image classification tasks. Additionally, a novel CNN architecture called CovidxNet-CT is introduced specifically designed for COVID-19 diagnosis using three classes of CT scans. To evaluate the effectiveness of the proposed method, k-fold cross-validation is employed, which is a common approach to estimate the performance of deep learning. The study is also evaluated the proposed method on two embedded system platforms, Jetson Nano and Tx2, to demonstrate its feasibility for deployment in resource-constrained environments. Results With an average accuracy of %98.83 and an AUC of 0.988, the system is trained and verified using a 4 fold cross-validation approach. Conclusion The optimistic outcomes from the investigation propose that CovidxNet-CT has the capacity to support radiologists and contribute towards the efforts to combat COVID-19. This study proposes a fully automated, deep-learning-based method for COVID-19 diagnosis and prognostic analysis that is specifically designed for use on embedded systems.
Collapse
|
7
|
Mall PK, Singh PK. MTR-SDL: a soft computing based multi-tier rank model for shoulder X-ray classification. Soft comput 2023:1-21. [PMID: 37362295 PMCID: PMC10242596 DOI: 10.1007/s00500-023-08562-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/18/2023] [Indexed: 06/28/2023]
Abstract
Deep neural networks (DNN) effectiveness are contingent upon access to quality-labelled training datasets since label mistakes (label noise) in training datasets may significantly impair the accuracy of models trained on clean test data. The primary impediments to developing and using DNN models in the healthcare sector include the lack of sufficient label data. Labeling data by a domain expert are a costly and time-consuming task. To overcome this limitation, the proposed Multi-Tier Rank-based Semi-supervised deep learning (MTR-SDL) for Shoulder X-Ray Classification uses the small labelled dataset to generate a labelled dataset from unable dataset to obtain performance equivalent to approaches trained on the enormous dataset. The motivation behind the suggested model MTR-SDL approach is analogous to how physicians deal with unknown or suspicious patients in everyday life. Practitioners handle these questionable circumstances with the support of professional colleagues. Before initiating treatment, some patients consult with a range of skilled doctors. Patients are treated according to the most suitable professional diagnosis (vote count). In this article, we have proposed a new ensemble learning technique called "Rank based Ensemble Selection with machine learning models" (MTR-SDL) approach. In this technique, multiple machine learning models are trained on a labeled dataset, and their accuracy is ranked. A dynamic ensemble voting approach is then used to tag samples for each base model in the ensemble. The combination of these tags is used to generate a final tag for an unlabeled dataset. Our suggested MTR-SDL model has attained the best accuracy and specificity, sensitivity, precision, Matthew's correlation coefficient, false discovery rate, false positive rate, f1 score, negative predictive value, and false negative rate negative 92.776%, 97.376%, 86.932%, 96.192%, 85.644%, 3.808%, 2.624%, 91.072%, 90.85%, and 13.068% for unseen dataset, respectively. This approach has the potential to improve the performance of ensemble models by leveraging the strengths of multiple base models and selecting the most informative samples for each model. This study results in an improved Semi-supervised deep learning model that is more effective and precise.
Collapse
Affiliation(s)
- Pawan Kumar Mall
- Computer Science and Engineering Department, Madan Mohan Malaviya University of Technology, Gorakhpur, India
| | - Pradeep Kumar Singh
- Computer Science and Engineering Department, Madan Mohan Malaviya University of Technology, Gorakhpur, India
| |
Collapse
|
8
|
Li Z, Zhang N, Gong H, Qiu R, Zhang W. MFA-Net: Multiple Feature Association Network for medical image segmentation. Comput Biol Med 2023; 158:106834. [PMID: 37003067 DOI: 10.1016/j.compbiomed.2023.106834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 03/01/2023] [Accepted: 03/26/2023] [Indexed: 03/30/2023]
Abstract
Medical image segmentation plays a crucial role in computer-aided diagnosis. However, due to the large variability of medical images, accurate segmentation is a highly challenging task. In this paper, we present a novel medical image segmentation network named the Multiple Feature Association Network (MFA-Net), which is based on deep learning techniques. The MFA-Net utilizes an encoder-decoder architecture with skip connections as its backbone network, and a parallelly dilated convolutions arrangement (PDCA) module is integrated between the encoder and the decoder to capture more representative deep features. Furthermore, a multi-scale feature restructuring module (MFRM) is introduced to restructure and fuse the deep features of the encoder. To enhance global attention perception, the proposed global attention stacking (GAS) modules are cascaded on the decoder. The proposed MFA-Net leverages novel global attention mechanisms to improve the segmentation performance at different feature scales. We evaluated our MFA-Net on four segmentation tasks, including lesions in intestinal polyp, liver tumor, prostate cancer, and skin lesion. Our experimental results and ablation study demonstrate that the proposed MFA-Net outperforms state-of-the-art methods in terms of global positioning and local edge recognition.
Collapse
Affiliation(s)
- Zhixun Li
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China
| | - Nan Zhang
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China
| | - Huiling Gong
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China.
| | - Ruiyun Qiu
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China
| | - Wei Zhang
- School of Mathematics and Computer Sciences, Nanchang University, Nanchang, China
| |
Collapse
|
9
|
Almuayqil S, Abd El-Ghany S, Shehab A. Multimodality Imaging of COVID-19 Using Fine-Tuned Deep Learning Models. Diagnostics (Basel) 2023; 13:diagnostics13071268. [PMID: 37046486 PMCID: PMC10093688 DOI: 10.3390/diagnostics13071268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 03/22/2023] [Accepted: 03/23/2023] [Indexed: 03/30/2023] Open
Abstract
In the face of the COVID-19 pandemic, many studies have been undertaken to provide assistive recommendations to patients to help overcome the burden of the expected shortage in clinicians. Thus, this study focused on diagnosing the COVID-19 virus using a set of fine-tuned deep learning models to overcome the latency in virus checkups. Five recent deep learning algorithms (EfficientB0, VGG-19, DenseNet121, EfficientB7, and MobileNetV2) were utilized to label both CT scan and chest X-ray images as positive or negative for COVID-19. The experimental results showed the superiority of the proposed method compared to state-of-the-art methods in terms of precision, sensitivity, specificity, F1 score, accuracy, and data access time.
Collapse
|
10
|
Rao Y, Lv Q, Zeng S, Yi Y, Huang C, Gao Y, Cheng Z, Sun J. COVID-19 CT ground-glass opacity segmentation based on attention mechanism threshold. Biomed Signal Process Control 2023; 81:104486. [PMID: 36505089 PMCID: PMC9721288 DOI: 10.1016/j.bspc.2022.104486] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 11/23/2022] [Accepted: 12/01/2022] [Indexed: 12/12/2022]
Abstract
The ground glass opacity (GGO) of the lung is one of the essential features of COVID-19. The GGO in computed tomography (CT) images has various features and low-intensity contrast between the GGO and edge structures. These problems pose significant challenges for segmenting the GGO. To tackle these problems, we propose a new threshold method for accurate segmentation of GGO. Specifically, we offer a framework for adjusting the threshold parameters according to the image contrast. Three functions include Attention mechanism threshold, Contour equalization, and Lung segmentation (ACL). The lung is divided into three areas using the attention mechanism threshold. Further, the segmentation parameters of the attention mechanism thresholds of the three parts are adaptively adjusted according to the image contrast. Only the segmentation regions restricted by the lung segmentation results are retained. Extensive experiments on four COVID datasets show that ACL can segment GGO images at low contrast well. Compared with the state-of-the-art methods, the similarity Dice of the ACL segmentation results is improved by 8.9%, the average symmetry surface distance ASD is reduced by 23%, and the required computational power F L O P s are only 0.09% of those of deep learning models. For GGO segmentation, ACL is more lightweight, and the accuracy is higher. Code will be released at https://github.com/Lqs-github/ACL.
Collapse
Affiliation(s)
- Yunbo Rao
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 611731, China
| | - Qingsong Lv
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 611731, China
| | - Shaoning Zeng
- Yangtze Delta Region Institute (Huzhou), University of Electronic Science and Technology of China, Huzhou, 313000, China
| | - Yuling Yi
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, 611731, China
| | - Cheng Huang
- Fifth Clinical College of Chongqing Medical University, Chongqing, 402177, China
| | - Yun Gao
- Chongqing University of Posts and Telecommunications, Chongqing, 400065, China
| | - Zhanglin Cheng
- Advanced Technology Chinese Academy of Sciences, Shenzhen, 610042, China
| | - Jihong Sun
- Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, 310014, China
| |
Collapse
|
11
|
Attallah O. RADIC:A tool for diagnosing COVID-19 from chest CT and X-ray scans using deep learning and quad-radiomics. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS : AN INTERNATIONAL JOURNAL SPONSORED BY THE CHEMOMETRICS SOCIETY 2023; 233:104750. [PMID: 36619376 PMCID: PMC9807270 DOI: 10.1016/j.chemolab.2022.104750] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 12/29/2022] [Accepted: 12/30/2022] [Indexed: 05/28/2023]
Abstract
Deep learning (DL) algorithms have demonstrated a high ability to perform speedy and accurate COVID-19 diagnosis utilizing computed tomography (CT) and X-Ray scans. The spatial information in these images was used to train DL models in the majority of relevant studies. However, training these models with images generated by radiomics approaches could enhance diagnostic accuracy. Furthermore, combining information from several radiomics approaches with time-frequency representations of the COVID-19 patterns can increase performance even further. This study introduces "RADIC", an automated tool that uses three DL models that are trained using radiomics-generated images to detect COVID-19. First, four radiomics approaches are used to analyze the original CT and X-ray images. Next, each of the three DL models is trained on a different set of radiomics, X-ray, and CT images. Then, for each DL model, deep features are obtained, and their dimensions are decreased using the Fast Walsh Hadamard Transform, yielding a time-frequency representation of the COVID-19 patterns. The tool then uses the discrete cosine transform to combine these deep features. Four classification models are then used to achieve classification. In order to validate the performance of RADIC, two benchmark datasets (CT and X-Ray) for COVID-19 are employed. The final accuracy attained using RADIC is 99.4% and 99% for the first and second datasets respectively. To prove the competing ability of RADIC, its performance is compared with related studies in the literature. The results reflect that RADIC achieve superior performance compared to other studies. The results of the proposed tool prove that a DL model can be trained more effectively with images generated by radiomics techniques than the original X-Ray and CT images. Besides, the incorporation of deep features extracted from DL models trained with multiple radiomics approaches will improve diagnostic accuracy.
Collapse
Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering & Technology, Arab Academy for Science, Technology & Maritime Transport, Alexandria, Egypt
| |
Collapse
|
12
|
Sun W, Feng X, Liu J, Ma H. Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images. Biomed Signal Process Control 2023; 79:104099. [PMID: 35996574 PMCID: PMC9385774 DOI: 10.1016/j.bspc.2022.104099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 07/30/2022] [Accepted: 08/15/2022] [Indexed: 12/09/2022]
Abstract
At the end of 2019, a novel coronavirus, COVID-19, was ravaging the world, wreaking havoc on public health and the global economy. Today, although Reverse Transcription-Polymerase Chain Reaction (RT-PCR) is the gold standard for COVID-19 clinical diagnosis, it is a time-consuming and labor-intensive procedure. Simultaneously, an increasing number of individuals are seeking for better alternatives to RT-PCR. As a result, automated identification of COVID-19 lung infection in computed tomography (CT) images may help traditional diagnostic approaches in determining the severity of the disease. Unfortunately, a shortage of labeled training sets makes using AI deep learning algorithms to accurately segregate diseased regions in CT scan challenging. We design a simple and effective weakly supervised learning strategy for COVID-19 CT image segmentation to overcome the segmentation issue in the absence of adequate labeled data, namely LLC-Net. Unlike others weakly supervised work that uses a complex training procedure, our LLC-Net is relatively easy and repeatable. We propose a Local Self-Coherence Mechanism to accomplish label propagation based on lesion area labeling characteristics for weak labels that cannot offer comprehensive lesion areas, hence forecasting a more complete lesion area. Secondly, when the COVID-19 training samples are insufficient, the Scale Transform for Self-Correlation is designed to optimize the robustness of the model to ensure that the CT images are consistent in the prediction results from different angles. Finally, in order to constrain the segmentation accuracy of the lesion area, the Lesion Infection Edge Attention Module is used to improve the information expression ability of edge modeling. Experiments on public datasets demonstrate that our method is more effective than other weakly supervised methods and achieves a new state-of-the-art performance.
Collapse
|
13
|
Kapoor NR, Kumar A, Kumar A, Zebari DA, Kumar K, Mohammed MA, Al-Waisy AS, Albahar MA. Event-Specific Transmission Forecasting of SARS-CoV-2 in a Mixed-Mode Ventilated Office Room Using an ANN. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:16862. [PMID: 36554744 PMCID: PMC9779012 DOI: 10.3390/ijerph192416862] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Revised: 12/08/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
The emerging novel variants and re-merging old variants of SARS-CoV-2 make it critical to study the transmission probability in mixed-mode ventilated office environments. Artificial neural network (ANN) and curve fitting (CF) models were created to forecast the R-Event. The R-Event is defined as the anticipated number of new infections that develop in particular events occurring over the course of time in any defined space. In the spring and summer of 2022, real-time data for an office environment were collected in India in a mixed-mode ventilated office space in a composite climate. The performances of the proposed CF and ANN models were compared with respect to traditional statistical indicators, such as the correlation coefficient, RMSE, MAE, MAPE, NS index, and a20-index, in order to determine the merit of the two approaches. Thirteen input features, namely the indoor temperature (TIn), indoor relative humidity (RHIn), area of opening (AO), number of occupants (O), area per person (AP), volume per person (VP), CO2 concentration (CO2), air quality index (AQI), outer wind speed (WS), outdoor temperature (TOut), outdoor humidity (RHOut), fan air speed (FS), and air conditioning (AC), were selected to forecast the R-Event as the target. The main objective was to determine the relationship between the CO2 level and R-Event, ultimately producing a model for forecasting infections in office building environments. The correlation coefficients for the CF and ANN models in this case study were 0.7439 and 0.9999, respectively. This demonstrates that the ANN model is more accurate in R-Event prediction than the curve fitting model. The results show that the proposed ANN model is reliable and significantly accurate in forecasting the R-Event values for mixed-mode ventilated offices.
Collapse
Affiliation(s)
- Nishant Raj Kapoor
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
- Architecture and Planning Department, CSIR-Central Building Research Institute, Roorkee 247667, India
| | - Ashok Kumar
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
- Architecture and Planning Department, CSIR-Central Building Research Institute, Roorkee 247667, India
| | - Anuj Kumar
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
- Building Energy Efficiency Division, CSIR-Central Building Research Institute, Roorkee 247667, India
| | - Dilovan Asaad Zebari
- Department of Computer Science, College of Science, Nawroz University, Duhok 42001, Iraq
| | - Krishna Kumar
- Department of Hydro and Renewable Energy, Indian Institute of Technology, Roorkee 247667, India
| | - Mazin Abed Mohammed
- College of Computer Science and Information Technology, University of Anbar, Anbar 31001, Iraq
| | - Alaa S. Al-Waisy
- Computer Technologies Engineering Department, Information Technology College, Imam Ja’afar Al-Sadiq University, Baghdad 10064, Iraq
| | - Marwan Ali Albahar
- School of Computer Science, Umm Al-Qura University, Mecca 24382, Saudi Arabia
| |
Collapse
|
14
|
Mostafa FA, Elrefaei LA, Fouda MM, Hossam A. A Survey on AI Techniques for Thoracic Diseases Diagnosis Using Medical Images. Diagnostics (Basel) 2022; 12:diagnostics12123034. [PMID: 36553041 PMCID: PMC9777249 DOI: 10.3390/diagnostics12123034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 11/20/2022] [Accepted: 11/22/2022] [Indexed: 12/12/2022] Open
Abstract
Thoracic diseases refer to disorders that affect the lungs, heart, and other parts of the rib cage, such as pneumonia, novel coronavirus disease (COVID-19), tuberculosis, cardiomegaly, and fracture. Millions of people die every year from thoracic diseases. Therefore, early detection of these diseases is essential and can save many lives. Earlier, only highly experienced radiologists examined thoracic diseases, but recent developments in image processing and deep learning techniques are opening the door for the automated detection of these diseases. In this paper, we present a comprehensive review including: types of thoracic diseases; examination types of thoracic images; image pre-processing; models of deep learning applied to the detection of thoracic diseases (e.g., pneumonia, COVID-19, edema, fibrosis, tuberculosis, chronic obstructive pulmonary disease (COPD), and lung cancer); transfer learning background knowledge; ensemble learning; and future initiatives for improving the efficacy of deep learning models in applications that detect thoracic diseases. Through this survey paper, researchers may be able to gain an overall and systematic knowledge of deep learning applications in medical thoracic images. The review investigates a performance comparison of various models and a comparison of various datasets.
Collapse
Affiliation(s)
- Fatma A. Mostafa
- Department of Electrical Engineering, Faculty of Engineering at Shoubra, Benha University, Cairo 11672, Egypt
| | - Lamiaa A. Elrefaei
- Department of Electrical Engineering, Faculty of Engineering at Shoubra, Benha University, Cairo 11672, Egypt
| | - Mostafa M. Fouda
- Department of Electrical and Computer Engineering, College of Science and Engineering, Idaho State University, Pocatello, ID 83209, USA
- Correspondence:
| | - Aya Hossam
- Department of Electrical Engineering, Faculty of Engineering at Shoubra, Benha University, Cairo 11672, Egypt
| |
Collapse
|
15
|
Diagnosis of COVID-19 Disease in Chest CT-Scan Images Based on Combination of Low-Level Texture Analysis and MobileNetV2 Features. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:1658615. [PMID: 36507230 PMCID: PMC9729025 DOI: 10.1155/2022/1658615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 10/01/2022] [Accepted: 10/25/2022] [Indexed: 12/02/2022]
Abstract
Since two years ago, the COVID-19 virus has spread strongly in the world and has killed more than 6 million people directly and has affected the lives of more than 500 million people. Early diagnosis of the virus can help to break the chain of transmission and reduce the death rate. In most cases, the virus spreads in the infected person's chest. Therefore, the analysis of a chest CT scan is one of the most efficient methods for diagnosing a patient. Until now, various methods have been presented to diagnose COVID-19 disease in chest CT-scan images. Most recent studies have proposed deep learning-based methods. But handcrafted features provide acceptable results in some studies too. In this paper, an innovative approach is proposed based on the combination of low-level and deep features. First of all, local neighborhood difference patterns are performed to extract handcrafted texture features. Next, deep features are extracted using MobileNetV2. Finally, a two-level decision-making algorithm is performed to improve the detection rate especially when the proposed decisions based on the two different feature set are not the same. The proposed approach is evaluated on a collected dataset of chest CT scan images from June 1, 2021, to December 20, 2021, of 238 cases in two groups of patient and healthy in different COVID-19 variants. The results show that the combination of texture and deep features can provide better performance than using each feature set separately. Results demonstrate that the proposed approach provides higher accuracy in comparison with some state-of-the-art methods in this scope.
Collapse
|
16
|
Prediction of Omicron Virus Using Combined Extended Convolutional and Recurrent Neural Networks Technique on CT-Scan Images. Interdiscip Perspect Infect Dis 2022; 2022:1525615. [PMID: 36562006 PMCID: PMC9763984 DOI: 10.1155/2022/1525615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 11/11/2022] [Accepted: 11/22/2022] [Indexed: 12/05/2022] Open
Abstract
COVID-19 has sparked a global pandemic, with a variety of inflamed instances and deaths increasing on an everyday basis. Researchers are actively increasing and improving distinct mathematical and ML algorithms to forecast the infection. The prediction and detection of the Omicron variant of COVID-19 brought new issues for the health fraternity due to its ubiquity in human beings. In this research work, two learning algorithms, namely, deep learning (DL) and machine learning (ML), were developed to forecast the Omicron virus infections. Automatic disease prediction and detection have become crucial issues in medical science due to rapid population growth. In this research study, a combined Extended CNN-RNN research model was developed on a chest CT-scan image dataset to predict the number of +ve and -ve cases of Omicron virus infections. The proposed research model was evaluated and compared against the existing system utilizing a dataset of 16,733-sample training and testing CT-scan images collected from the Kaggle repository. This research article aims to introduce a combined ML and DL technique based on the combination of an Extended Convolutional Neural Network (ECNN) and an Extended Recurrent Neural Network (ERNN) to diagnose and predict Omicron virus-infected cases automatically using chest CT-scan images. To overcome the drawbacks of the existing system, this research proposes a combined research model that is ECNN-ERNN, where ECNN is used for the extraction of deep features and ERNN is used for exploration using extracted features. A dataset of 16,733 Omicron computer tomography images was used as a pilot assessment for this proposed prototype. The investigational experiment results show that the projected prototype provides 97.50% accuracy, 98.10% specificity, 98.80% of AUC, and 97.70% of F1-score. To the last, the study outlines the advantages being offered by the proposed model with respect to other existing models by comparing different parameters of validation such as accuracy, error rate, data size, time complexity, and execution time.
Collapse
|
17
|
Xu L, Zhu S, Wen N. Deep reinforcement learning and its applications in medical imaging and radiation therapy: a survey. Phys Med Biol 2022; 67. [PMID: 36270582 DOI: 10.1088/1361-6560/ac9cb3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 10/21/2022] [Indexed: 11/07/2022]
Abstract
Reinforcement learning takes sequential decision-making approaches by learning the policy through trial and error based on interaction with the environment. Combining deep learning and reinforcement learning can empower the agent to learn the interactions and the distribution of rewards from state-action pairs to achieve effective and efficient solutions in more complex and dynamic environments. Deep reinforcement learning (DRL) has demonstrated astonishing performance in surpassing the human-level performance in the game domain and many other simulated environments. This paper introduces the basics of reinforcement learning and reviews various categories of DRL algorithms and DRL models developed for medical image analysis and radiation treatment planning optimization. We will also discuss the current challenges of DRL and approaches proposed to make DRL more generalizable and robust in a real-world environment. DRL algorithms, by fostering the designs of the reward function, agents interactions and environment models, can resolve the challenges from scarce and heterogeneous annotated medical image data, which has been a major obstacle to implementing deep learning models in the clinic. DRL is an active research area with enormous potential to improve deep learning applications in medical imaging and radiation therapy planning.
Collapse
Affiliation(s)
- Lanyu Xu
- Department of Computer Science and Engineering, Oakland University, Rochester, MI, United States of America
| | - Simeng Zhu
- Department of Radiation Oncology, Henry Ford Health Systems, Detroit, MI, United States of America
| | - Ning Wen
- Department of Radiology/The Institute for Medical Imaging Technology, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, People's Republic of China.,The Global Institute of Future Technology, Shanghai Jiaotong University, Shanghai, People's Republic of China
| |
Collapse
|
18
|
Hamza A, Attique Khan M, Wang SH, Alhaisoni M, Alharbi M, Hussein HS, Alshazly H, Kim YJ, Cha J. COVID-19 classification using chest X-ray images based on fusion-assisted deep Bayesian optimization and Grad-CAM visualization. Front Public Health 2022; 10:1046296. [PMID: 36408000 PMCID: PMC9672507 DOI: 10.3389/fpubh.2022.1046296] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 10/12/2022] [Indexed: 11/06/2022] Open
Abstract
The COVID-19 virus's rapid global spread has caused millions of illnesses and deaths. As a result, it has disastrous consequences for people's lives, public health, and the global economy. Clinical studies have revealed a link between the severity of COVID-19 cases and the amount of virus present in infected people's lungs. Imaging techniques such as computed tomography (CT) and chest x-rays can detect COVID-19 (CXR). Manual inspection of these images is a difficult process, so computerized techniques are widely used. Deep convolutional neural networks (DCNNs) are a type of machine learning that is frequently used in computer vision applications, particularly in medical imaging, to detect and classify infected regions. These techniques can assist medical personnel in the detection of patients with COVID-19. In this article, a Bayesian optimized DCNN and explainable AI-based framework is proposed for the classification of COVID-19 from the chest X-ray images. The proposed method starts with a multi-filter contrast enhancement technique that increases the visibility of the infected part. Two pre-trained deep models, namely, EfficientNet-B0 and MobileNet-V2, are fine-tuned according to the target classes and then trained by employing Bayesian optimization (BO). Through BO, hyperparameters have been selected instead of static initialization. Features are extracted from the trained model and fused using a slicing-based serial fusion approach. The fused features are classified using machine learning classifiers for the final classification. Moreover, visualization is performed using a Grad-CAM that highlights the infected part in the image. Three publically available COVID-19 datasets are used for the experimental process to obtain improved accuracies of 98.8, 97.9, and 99.4%, respectively.
Collapse
Affiliation(s)
- Ameer Hamza
- Department of Computer Science, HITEC University, Taxila, Pakistan
| | - Muhammad Attique Khan
- Department of Computer Science, HITEC University, Taxila, Pakistan,*Correspondence: Muhammad Attique Khan
| | - Shui-Hua Wang
- Department of Mathematics, University of Leicester, Leicester, United Kingdom
| | - Majed Alhaisoni
- Computer Sciences Department, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Meshal Alharbi
- Department of Computer Science, College of Computer Engineering and Sciences, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Hany S. Hussein
- Electrical Engineering Department, College of Engineering, King Khalid University, Abha, Saudi Arabia,Electrical Engineering Department, Faculty of Engineering, Aswan University, Aswan, Egypt
| | - Hammam Alshazly
- Faculty of Computers and Information, South Valley University, Qena, Egypt
| | - Ye Jin Kim
- Department of Computer Science, Hanyang University, Seoul, South Korea
| | - Jaehyuk Cha
- Department of Computer Science, Hanyang University, Seoul, South Korea,Jaehyuk Cha
| |
Collapse
|
19
|
Wang G, Guo S, Han L, Song X, Zhao Y. Research on multi-modal autonomous diagnosis algorithm of COVID-19 based on whale optimized support vector machine and improved D-S evidence fusion. Comput Biol Med 2022; 150:106181. [PMID: 36240596 PMCID: PMC9533636 DOI: 10.1016/j.compbiomed.2022.106181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 09/19/2022] [Accepted: 10/01/2022] [Indexed: 11/03/2022]
Abstract
Aiming at the problem that the single CT image signal feature recognition method in the self-diagnosis of diseases cannot accurately and reliably classify COVID-19, and it is easily confused with suspected cases. The collected CT signals and experimental indexes are extracted to construct different feature vectors. The support vector machine is optimized by the improved whale algorithm for the preliminary diagnosis of COVID-19, and the basic probability distribution function of each evidence is calculated by the posterior probability modeling method. Then the similarity measure is introduced to optimize the basic probability distribution function. Finally, the multi-domain feature fusion prediction model is established by using the weighted D-S evidence theory. The experimental results show that the fusion of multi-domain feature information by whale optimized support vector machine and improved D-S evidence theory can effectively improve the accuracy and the precision of COVID-19 autonomous diagnosis. The method of replacing a single feature parameter with multi-modal indicators (CT, routine laboratory indexes, serum cytokines and chemokines) provides a more reliable signal source for the diagnosis model, which can effectively distinguish COVID-19 from the suspected cases.
Collapse
Affiliation(s)
- Guowei Wang
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing 100081, China
| | - Shuli Guo
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing 100081, China.
| | - Lina Han
- Department of Cardiology, The Second Medical Center, National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, China.
| | - Xiaowei Song
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing 100081, China
| | - Yuanyuan Zhao
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing 100081, China
| |
Collapse
|
20
|
Manocha A, Bhatia M. A novel deep fusion strategy for COVID-19 prediction using multimodality approach. COMPUTERS & ELECTRICAL ENGINEERING : AN INTERNATIONAL JOURNAL 2022; 103:108274. [PMID: 35938050 PMCID: PMC9346103 DOI: 10.1016/j.compeleceng.2022.108274] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 07/22/2022] [Accepted: 07/25/2022] [Indexed: 05/26/2023]
Abstract
Over the last two years, the novel coronavirus has become a significant threat to the health of the public, and numerous approaches are developed to determine the symptoms of COVID-19. To deal with the complex symptoms of COVID-19, a Deep Learning-assisted Multi-modal Data Analysis (DMDA) approach is introduced to determine COVID-19 symptoms by utilizing acoustic and image-based data. Furthermore, the classified events are forwarded to the proposed Dynamic Fusion Strategy (DFS) for confirming the health status of the individual. Initially, the performance of the proposed solution is evaluated on both acoustic and image-based samples and the proposed solution attains the maximum accuracy of 96.88% and 98.76%, respectively. Similarly, the DFS has achieved an overall symptom determination accuracy of 98.72% which is highly acceptable for decision-making. Moreover, the proposed solution shows high reliability with an accuracy of 95.64% even in absence of any one of the data modalities during testing.
Collapse
Affiliation(s)
- Ankush Manocha
- Lovely Professional University, Phagwara, 144411, Punjab, India
| | - Munish Bhatia
- Lovely Professional University, Phagwara, 144411, Punjab, India
| |
Collapse
|
21
|
Mukhlif AA, Al-Khateeb B, Mohammed MA. An extensive review of state-of-the-art transfer learning techniques used in medical imaging: Open issues and challenges. JOURNAL OF INTELLIGENT SYSTEMS 2022. [DOI: 10.1515/jisys-2022-0198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract
Deep learning techniques, which use a massive technology known as convolutional neural networks, have shown excellent results in a variety of areas, including image processing and interpretation. However, as the depth of these networks grows, so does the demand for a large amount of labeled data required to train these networks. In particular, the medical field suffers from a lack of images because the procedure for obtaining labeled medical images in the healthcare field is difficult, expensive, and requires specialized expertise to add labels to images. Moreover, the process may be prone to errors and time-consuming. Current research has revealed transfer learning as a viable solution to this problem. Transfer learning allows us to transfer knowledge gained from a previous process to improve and tackle a new problem. This study aims to conduct a comprehensive survey of recent studies that dealt with solving this problem and the most important metrics used to evaluate these methods. In addition, this study identifies problems in transfer learning techniques and highlights the problems of the medical dataset and potential problems that can be addressed in future research. According to our review, many researchers use pre-trained models on the Imagenet dataset (VGG16, ResNet, Inception v3) in many applications such as skin cancer, breast cancer, and diabetic retinopathy classification tasks. These techniques require further investigation of these models, due to training them on natural, non-medical images. In addition, many researchers use data augmentation techniques to expand their dataset and avoid overfitting. However, not enough studies have shown the effect of performance with or without data augmentation. Accuracy, recall, precision, F1 score, receiver operator characteristic curve, and area under the curve (AUC) were the most widely used measures in these studies. Furthermore, we identified problems in the datasets for melanoma and breast cancer and suggested corresponding solutions.
Collapse
Affiliation(s)
- Abdulrahman Abbas Mukhlif
- Computer Science Department, College of Computer Science and Information Technology, University of Anbar , 31001 , Ramadi , Anbar , Iraq
| | - Belal Al-Khateeb
- Computer Science Department, College of Computer Science and Information Technology, University of Anbar , 31001 , Ramadi , Anbar , Iraq
| | - Mazin Abed Mohammed
- Computer Science Department, College of Computer Science and Information Technology, University of Anbar , 31001 , Ramadi , Anbar , Iraq
| |
Collapse
|
22
|
Jangam E, Annavarapu CSR, Barreto AAD. A multi-class classification framework for disease screening and disease diagnosis of COVID-19 from chest X-ray images. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 82:14367-14401. [PMID: 36157353 PMCID: PMC9490695 DOI: 10.1007/s11042-022-13710-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 05/05/2022] [Accepted: 08/24/2022] [Indexed: 06/16/2023]
Abstract
To accurately diagnose multiple lung diseases from chest X-rays, the critical aspect is to identify lung diseases with high sensitivity and specificity. This study proposed a novel multi-class classification framework that minimises either false positives or false negatives that is useful in computer aided diagnosis or computer aided detection respectively. To minimise false positives or false negatives, we generated respective stacked ensemble from pre-trained models and fully connected layers using selection metric and systematic method. The diversity of base classifiers was based on diverse set of false positives or false negatives generated. The proposed multi-class framework was evaluated on two chest X-ray datasets, and the performance was compared with the existing models and base classifiers. Moreover, we used LIME (Local Interpretable Model-agnostic Explanations) to locate the regions focused by the multi-class classification framework.
Collapse
Affiliation(s)
- Ebenezer Jangam
- Department of Information Technology, Velagapudi Ramakrishna Siddhartha Engineering College, Vijayawada, Andhra Pradesh India
- Department of Computer Science Engineering, Indian Institute of Technology(ISM), Dhanbad, Jharkhand India
| | | | | |
Collapse
|
23
|
MEF: Multidimensional Examination Framework for Prioritization of COVID-19 Severe Patients and Promote Precision Medicine Based on Hybrid Multi-Criteria Decision-Making Approaches. Bioengineering (Basel) 2022; 9:bioengineering9090457. [PMID: 36135003 PMCID: PMC9495842 DOI: 10.3390/bioengineering9090457] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 09/02/2022] [Accepted: 09/04/2022] [Indexed: 11/17/2022] Open
Abstract
Effective prioritization plays critical roles in precision medicine. Healthcare decisions are complex, involving trade-offs among numerous frequently contradictory priorities. Considering the numerous difficulties associated with COVID-19, approaches that could triage COVID-19 patients may help in prioritizing treatment and provide precise medicine for those who are at risk of serious disease. Prioritizing a patient with COVID-19 depends on a variety of examination criteria, but due to the large number of these biomarkers, it may be hard for medical practitioners and emergency systems to decide which cases should be given priority for treatment. The aim of this paper is to propose a Multidimensional Examination Framework (MEF) for the prioritization of COVID-19 severe patients on the basis of combined multi-criteria decision-making (MCDM) methods. In contrast to the existing literature, the MEF has not considered only a single dimension of the examination factors; instead, the proposed framework included different multidimensional examination criteria such as demographic, laboratory findings, vital signs, symptoms, and chronic conditions. A real dataset that consists of data from 78 patients with different examination criteria was used as a base in the construction of Multidimensional Evaluation Matrix (MEM). The proposed framework employs the CRITIC (CRiteria Importance Through Intercriteria Correlation) method to identify objective weights and importance for multidimensional examination criteria. Furthermore, the VIKOR (VIekriterijumsko KOmpromisno Rangiranje) method is utilized to prioritize COVID-19 severe patients. The results based on the CRITIC method showed that the most important examination criterion for prioritization is COVID-19 patients with heart disease, followed by cough and nasal congestion symptoms. Moreover, the VIKOR method showed that Patients 8, 3, 9, 59, and 1 are the most urgent cases that required the highest priority among the other 78 patients. Finally, the proposed framework can be used by medical organizations to prioritize the most critical COVID-19 patient that has multidimensional examination criteria and to promptly give appropriate care for more precise medicine.
Collapse
|
24
|
Fakieh B, Ragab M. Automated COVID-19 Classification Using Heap-Based Optimization with the Deep Transfer Learning Model. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:7508836. [PMID: 36045956 PMCID: PMC9423999 DOI: 10.1155/2022/7508836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 05/31/2022] [Accepted: 06/23/2022] [Indexed: 11/17/2022]
Abstract
The outbreak of the COVID-19 pandemic necessitates prompt identification of affected persons to restrict the spread of the COVID-19 epidemic. Radiological imaging such as computed tomography (CT) and chest X-rays (CXR) is considered an effective way to diagnose COVID-19. However, it needs an expert's knowledge and consumes more time. At the same time, artificial intelligence (AI) and medical images are discovered to be helpful in effectively assessing and providing treatment for COVID-19 infected patients. In particular, deep learning (DL) models act as a vital part of a high-performance classification model for COVID-19 recognition on CXR images. This study develops a heap-based optimization with the deep transfer learning model for detection and classification (HBODTL-DC) of COVID-19. The proposed HBODTL-DC system majorly focuses on the identification of COVID-19 on CXR images. To do so, the presented HBODTL-DC model initially exploits the Gabor filtering (GF) technique to enhance the image quality. In addition, the HBO algorithm with a neural architecture search network (NasNet) large model is employed for the extraction of feature vectors. Finally, Elman Neural Network (ENN) model gets the feature vectors as input and categorizes the CXR images into distinct classes. The experimental validation of the HBODTL-DC model takes place on the benchmark CXR image dataset from the Kaggle repository, and the outcomes are checked in numerous dimensions. The experimental outcomes stated the supremacy of the HBODTL-DC model over recent approaches with a maximum accuracy of 0.9992.
Collapse
Affiliation(s)
- Bahjat Fakieh
- Information Systems Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Mahmoud Ragab
- Information Technology Department, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah 21589, Saudi Arabia
- Department of Mathematics, Faculty of Science, Al-Azhar University, Naser City 11884, Cairo, Egypt
- Centre for Artificial Intelligence in Precision Medicines, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| |
Collapse
|
25
|
Novel Crow Swarm Optimization Algorithm and Selection Approach for Optimal Deep Learning COVID-19 Diagnostic Model. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:1307944. [PMID: 35996653 PMCID: PMC9392599 DOI: 10.1155/2022/1307944] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/2022] [Revised: 03/16/2022] [Accepted: 07/19/2022] [Indexed: 02/07/2023]
Abstract
Due to the COVID-19 pandemic, computerized COVID-19 diagnosis studies are proliferating. The diversity of COVID-19 models raises the questions of which COVID-19 diagnostic model should be selected and which decision-makers of healthcare organizations should consider performance criteria. Because of this, a selection scheme is necessary to address all the above issues. This study proposes an integrated method for selecting the optimal deep learning model based on a novel crow swarm optimization algorithm for COVID-19 diagnosis. The crow swarm optimization is employed to find an optimal set of coefficients using a designed fitness function for evaluating the performance of the deep learning models. The crow swarm optimization is modified to obtain a good selected coefficient distribution by considering the best average fitness. We have utilized two datasets: the first dataset includes 746 computed tomography images, 349 of them are of confirmed COVID-19 cases and the other 397 are of healthy individuals, and the second dataset are composed of unimproved computed tomography images of the lung for 632 positive cases of COVID-19 with 15 trained and pretrained deep learning models with nine evaluation metrics are used to evaluate the developed methodology. Among the pretrained CNN and deep models using the first dataset, ResNet50 has an accuracy of 91.46% and a F1-score of 90.49%. For the first dataset, the ResNet50 algorithm is the optimal deep learning model selected as the ideal identification approach for COVID-19 with the closeness overall fitness value of 5715.988 for COVID-19 computed tomography lung images case considered differential advancement. In contrast, the VGG16 algorithm is the optimal deep learning model is selected as the ideal identification approach for COVID-19 with the closeness overall fitness value of 5758.791 for the second dataset. Overall, InceptionV3 had the lowest performance for both datasets. The proposed evaluation methodology is a helpful tool to assist healthcare managers in selecting and evaluating the optimal COVID-19 diagnosis models based on deep learning.
Collapse
|
26
|
Fang L, Wang X. COVID-RDNet: A novel coronavirus pneumonia classification model using the mixed dataset by CT and X-rays images. Biocybern Biomed Eng 2022; 42:977-994. [PMID: 35945982 PMCID: PMC9353669 DOI: 10.1016/j.bbe.2022.07.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 07/10/2022] [Accepted: 07/31/2022] [Indexed: 12/23/2022]
Abstract
Corona virus disease 2019 (COVID-19) testing relies on traditional screening methods, which require a lot of manpower and material resources. Recently, to effectively reduce the damage caused by radiation and enhance effectiveness, deep learning of classifying COVID-19 negative and positive using the mixed dataset by CT and X-rays images have achieved remarkable research results. However, the details presented on CT and X-ray images have pathological diversity and similarity features, thus increasing the difficulty for physicians to judge specific cases. On this basis, this paper proposes a novel coronavirus pneumonia classification model using the mixed dataset by CT and X-rays images. To solve the problem of feature similarity between lung diseases and COVID-19, the extracted features are enhanced by an adaptive region enhancement algorithm. Besides, the depth network based on the residual blocks and the dense blocks is trained and tested. On the one hand, the residual blocks effectively improve the accuracy of the model and the non-linear COVID-19 features are obtained by cross-layer link. On the other hand, the dense blocks effectively improve the robustness of the model by connecting local and abstract information. On mixed X-ray and CT datasets, the sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), area under curve (AUC), and accuracy can all reach 0.99. On the basis of respecting patient privacy and ethics, the proposed algorithm using the mixed dataset from real cases can effectively assist doctors in performing the accurate COVID-19 negative and positive classification to determine the infection status of patients.
Collapse
Affiliation(s)
- Lingling Fang
- Department of Computing and Information Technology, Liaoning Normal University, Dalian City, Liaoning Province, China
| | - Xin Wang
- Department of Computing and Information Technology, Liaoning Normal University, Dalian City, Liaoning Province, China
| |
Collapse
|
27
|
An Optimized Decision Support Model for COVID-19 Diagnostics Based on Complex Fuzzy Hypersoft Mapping. MATHEMATICS 2022. [DOI: 10.3390/math10142472] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
COVID-19 has shaken the entire world economy and affected millions of people in a brief period. COVID-19 has numerous overlapping symptoms with other upper respiratory conditions, making it hard for diagnosticians to diagnose correctly. Several mathematical models have been presented for its diagnosis and treatment. This article delivers a mathematical framework based on a novel agile fuzzy-like arrangement, namely, the complex fuzzy hypersoft (CFHS) set, which is a formation of the complex fuzzy (CF) set and the hypersoft set (an extension of soft set). First, the elementary theory of CFHS is developed, which considers the amplitude term (A-term) and the phase term (P-term) of the complex numbers simultaneously to tackle uncertainty, ambivalence, and mediocrity of data. In two components, this new fuzzy-like hybrid theory is versatile. First, it provides access to a broad spectrum of membership function values by broadening them to the unit circle on an Argand plane and incorporating an additional term, the P-term, to accommodate the data’s periodic nature. Second, it categorizes the distinct attribute into corresponding sub-valued sets for better understanding. The CFHS set and CFHS-mapping with its inverse mapping (INM) can manage such issues. Our proposed framework is validated by a study establishing a link between COVID-19 symptoms and medicines. For the COVID-19 types, a table is constructed relying on the fuzzy interval of [0,1]. The computation is based on CFHS-mapping, which identifies the disease and selects the optimum medication correctly. Furthermore, a generalized CFHS-mapping is provided, which can help a specialist extract the patient’s health record and predict how long it will take to overcome the infection.
Collapse
|
28
|
Performance Analysis for COVID-19 Diagnosis Using Custom and State-of-the-Art Deep Learning Models. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12136364] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The modern scientific world continuously endeavors to battle and devise solutions for newly arising pandemics. One such pandemic which has turned the world’s accustomed routine upside down is COVID-19: it has devastated the world economy and destroyed around 45 million lives, globally. Governments and scientists have been on the front line, striving towards the diagnosis and engineering of a vaccination for the said virus. COVID-19 can be diagnosed using artificial intelligence more accurately than traditional methods using chest X-rays. This research involves an evaluation of the performance of deep learning models for COVID-19 diagnosis using chest X-ray images from a dataset containing the largest number of COVID-19 images ever used in the literature, according to the best of the authors’ knowledge. The size of the utilized dataset is about 4.25 times the maximum COVID-19 chest X-ray image dataset used in the explored literature. Further, a CNN model was developed, named the Custom-Model in this study, for evaluation against, and comparison to, the state-of-the-art deep learning models. The intention was not to develop a new high-performing deep learning model, but rather to evaluate the performance of deep learning models on a larger COVID-19 chest X-ray image dataset. Moreover, Xception- and MobilNetV2- based models were also used for evaluation purposes. The criteria for evaluation were based on accuracy, precision, recall, F1 score, ROC curves, AUC, confusion matrix, and macro and weighted averages. Among the deployed models, Xception was the top performer in terms of precision and accuracy, while the MobileNetV2-based model could detect slightly more COVID-19 cases than Xception, and showed slightly fewer false negatives, while giving far more false positives than the other models. Also, the custom CNN model exceeds the MobileNetV2 model in terms of precision. The best accuracy, precision, recall, and F1 score out of these three models were 94.2%, 99%, 95%, and 97%, respectively, as shown by the Xception model. Finally, it was found that the overall accuracy in the current evaluation was curtailed by approximately 2% compared with the average accuracy of previous work on multi-class classification, while a very high precision value was observed, which is of high scientific value.
Collapse
|
29
|
Ibrahim M, Elhafiz R. Integrated Clinical Environment Security Analysis Using Reinforcement Learning. BIOENGINEERING (BASEL, SWITZERLAND) 2022; 9:bioengineering9060253. [PMID: 35735496 PMCID: PMC9220416 DOI: 10.3390/bioengineering9060253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 06/02/2022] [Accepted: 06/07/2022] [Indexed: 11/16/2022]
Abstract
Many communication standards have been proposed recently and more are being developed as a vision for dynamically composable and interoperable medical equipment. However, few have security systems that are sufficiently extensive or flexible to meet current and future safety requirements. This paper aims to analyze the cybersecurity of the Integrated Clinical Environment (ICE) through the investigation of its attack graph and the application of artificial intelligence techniques that can efficiently demonstrate the subsystems’ vulnerabilities. Attack graphs are widely used for assessing network security. On the other hand, they are typically too huge and sophisticated for security administrators to comprehend and evaluate. Therefore, this paper presents a Q-learning-based attack graph analysis approach in which an attack graph that is generated for the Integrated Clinical Environment system resembles the environment, and the agent is assumed to be the attacker. Q-learning can aid in determining the best route that the attacker can take in order to damage the system as much as possible with the least number of actions. Numeric values will be assigned to the attack graph to better determine the most vulnerable part of the system and suggest this analysis to be further utilized for bigger graphs.
Collapse
|
30
|
Ibrahim DA, Zebari DA, Mohammed HJ, Mohammed MA. Effective hybrid deep learning model for COVID-19 patterns identification using CT images. EXPERT SYSTEMS 2022; 39:e13010. [PMID: 35942177 PMCID: PMC9348188 DOI: 10.1111/exsy.13010] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Revised: 03/08/2022] [Accepted: 03/23/2022] [Indexed: 05/31/2023]
Abstract
Coronavirus disease 2019 (COVID-19) has attracted significant attention of researchers from various disciplines since the end of 2019. Although the global epidemic situation is stabilizing due to vaccination, new COVID-19 cases are constantly being discovered around the world. As a result, lung computed tomography (CT) examination, an aggregated identification technique, has been used to ameliorate diagnosis. It helps reveal missed diagnoses due to the ambiguity of nucleic acid polymerase chain reaction. Therefore, this study investigated how quickly and accurately hybrid deep learning (DL) methods can identify infected individuals with COVID-19 on the basis of their lung CT images. In addition, this study proposed a developed system to create a reliable COVID-19 prediction network using various layers starting with the segmentation of the lung CT scan image and ending with disease prediction. The initial step of the system starts with a proposed technique for lung segmentation that relies on a no-threshold histogram-based image segmentation method. Afterward, the GrabCut method was used as a post-segmentation method to enhance segmentation outcomes and avoid over-and under-segmentation problems. Then, three pre-trained models of standard DL methods, including Visual Geometry Group Network, convolutional deep belief network, and high-resolution network, were utilized to extract the most affective features from the segmented images that can help to identify COVID-19. These three described pre-trained models were combined as a new mechanism to increase the system's overall prediction capabilities. A publicly available dataset, namely, COVID-19 CT, was used to test the performance of the proposed model, which obtained a 95% accuracy rate. On the basis of comparison, the proposed model outperformed several state-of-the-art studies. Because of its effectiveness in accurately screening COVID-19 CT images, the developed model will potentially be valuable as an additional diagnostic tool for leading clinical professionals.
Collapse
Affiliation(s)
- Dheyaa Ahmed Ibrahim
- Communications Engineering Techniques Department, Information Technology CollageImam Ja'afar Al‐Sadiq UniversityBaghdadIraq
| | - Dilovan Asaad Zebari
- Department of Computer Science, College of ScienceNawroz UniversityDuhok Kurdistan RegionIraq
| | | | - Mazin Abed Mohammed
- Information systems Department, College of Computer Science and Information TechnologyUniversity of AnbarAl AnbarIraq
| |
Collapse
|
31
|
Automatic COVID-19 Lung Infection Segmentation through Modified Unet Model. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:6566982. [PMID: 35422980 PMCID: PMC9002904 DOI: 10.1155/2022/6566982] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 02/23/2022] [Accepted: 02/28/2022] [Indexed: 11/23/2022]
Abstract
The coronavirus (COVID-19) pandemic has had a terrible impact on human lives globally, with far-reaching consequences for the health and well-being of many people around the world. Statistically, 305.9 million people worldwide tested positive for COVID-19, and 5.48 million people died due to COVID-19 up to 10 January 2022. CT scans can be used as an alternative to time-consuming RT-PCR testing for COVID-19. This research work proposes a segmentation approach to identifying ground glass opacity or ROI in CT images developed by coronavirus, with a modified structure of the Unet model having been used to classify the region of interest at the pixel level. The problem with segmentation is that the GGO often appears indistinguishable from a healthy lung in the initial stages of COVID-19, and so, to cope with this, the increased set of weights in contracting and expanding the Unet path and an improved convolutional module is added in order to establish the connection between the encoder and decoder pipeline. This has a major capacity to segment the GGO in the case of COVID-19, with the proposed model being referred to as “convUnet.” The experiment was performed on the Medseg1 dataset, and the addition of a set of weights at each layer of the model and modification in the connected module in Unet led to an improvement in overall segmentation results. The quantitative results obtained using accuracy, recall, precision, dice-coefficient, F1score, and IOU were 93.29%, 93.01%, 93.67%, 92.46%, 93.34%, 86.96%, respectively, which is better than that obtained using Unet and other state-of-the-art models. Therefore, this segmentation approach proved to be more accurate, fast, and reliable in helping doctors to diagnose COVID-19 quickly and efficiently.
Collapse
|
32
|
Determination of the Severity and Percentage of COVID-19 Infection through a Hierarchical Deep Learning System. J Pers Med 2022; 12:jpm12040535. [PMID: 35455654 PMCID: PMC9027976 DOI: 10.3390/jpm12040535] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 03/21/2022] [Accepted: 03/24/2022] [Indexed: 12/18/2022] Open
Abstract
The coronavirus disease 2019 (COVID-19) has caused millions of deaths and one of the greatest health crises of all time. In this disease, one of the most important aspects is the early detection of the infection to avoid the spread. In addition to this, it is essential to know how the disease progresses in patients, to improve patient care. This contribution presents a novel method based on a hierarchical intelligent system, that analyzes the application of deep learning models to detect and classify patients with COVID-19 using both X-ray and chest computed tomography (CT). The methodology was divided into three phases, the first being the detection of whether or not a patient suffers from COVID-19, the second step being the evaluation of the percentage of infection of this disease and the final phase is to classify the patients according to their severity. Stratification of patients suffering from COVID-19 according to their severity using automatic systems based on machine learning on medical images (especially X-ray and CT of the lungs) provides a powerful tool to help medical experts in decision making. In this article, a new contribution is made to a stratification system with three severity levels (mild, moderate and severe) using a novel histogram database (which defines how the infection is in the different CT slices for a patient suffering from COVID-19). The first two phases use CNN Densenet-161 pre-trained models, and the last uses SVM with LDA supervised learning algorithms as classification models. The initial stage detects the presence of COVID-19 through X-ray multi-class (COVID-19 vs. No-Findings vs. Pneumonia) and the results obtained for accuracy, precision, recall, and F1-score values are 88%, 91%, 87%, and 89%, respectively. The following stage manifested the percentage of COVID-19 infection in the slices of the CT-scans for a patient and the results in the metrics evaluation are 0.95 in Pearson Correlation coefficient, 5.14 in MAE and 8.47 in RMSE. The last stage finally classifies a patient in three degrees of severity as a function of global infection of the lungs and the results achieved are 95% accurate.
Collapse
|