Bioplastic Production by Bacillus wiedmannii AS-02 OK576278 Using Different Agricultural Wastes

Exploring newly isolated thermotolerant, halotolerant and antimicrobial resistant Bacillus subtilis ProNTL1 from tannery waste and its alkaline protease production

BACKGROUND

A hydrolytic enzyme called protease from microbial sources has expansive applications in leather as well as tannery industries and thus leaves no choice but to discover a potential candidate for efficient yield of protease with eccentric characteristics.

METHODS AND RESULTS

In the current study, using skim milk agar medium, three bacterial strains (Pro SS14, Pro NTL1, Pro SM) were identified for protease production out of thirty tannery waste samples. The bacterial isolates were identified through morphological, biochemical and molecular basis and the highest protease producer (134 U/mL) having the paramount protein content (8.75%) with the greatest biomass (absorbance 1.7 at 600 nm) was further bioinformatically identified as Bacillus subtilis Pro NTL1. Moreover, the cultural conditions-pH, temperature, incubation period and salinity were tested to get the optimized condition for the three isolates where Bacillus subtilis Pro NTL1 gave best growth at pH 9 demonstrating alkaline protease producing capability, at 45 °C for 72 h proving its thermotolerance characteristics and at 3% NaCl concentration declaring its halotolerance property. Furthermore, following Kirby-Bauer agar disc diffusion technique, the antimicrobial susceptibility pattern was investigated showing Bacillus subtilis Pro NTL1 was resistant to ampicillin, penicillin, sulfafurazole and sensitive to amoxicillin, gentamycin, cefotaxime, kanamycin, imipenem, tetracycline. Additionally, Bacillus subtilis Pro NTL1 showed antagonistic activity against three pathogens named Bacillus cereus, Bacillus megaterium and Escherichia coli.

CONCLUSIONS

Thus, these findings suggest that Bacillus subtilis Pro NTL1 is a newly isolated strain with unique features which might help to contribute in several biotechnological purposes with significant industrial benefits.

Isolation of Massilia species capable of degrading Poly(3-hydroxybutyrate) isolated from eggplant (Solanum melongena L.) field

Poly(3-hydroxybutyrate) (PHB) is crucial for replacing petroleum-based plastics, an essential step towards fostering a bio-based economy. This shift is urgently needed to safeguard human health and preserve natural ecosystems. PHB is one of the most extremely commercialized bio-plastics. Although. significant progress has been made in identifying bacteria that produce PHB, fewer bacteria capable of degrading it have been discovered. Four newly isolated Massilia strains capable of degrading PHB were discovered in eggplant (Solanum melongena L.) field soil. Their PHB-degrading abilities were investigated under different temperatures and media using emulsified solid-media based cultures. The strains belong to the genus Massilia, were evaluated for their effectiveness. Among them, Massilia sp. JJY02, was selected for its exceptional PHB degradation. PHB degradation was confirmed by monitoring changes in the physical and chemical properties of PHB films using scanning electron microscopy (SEM), Fourier-transform infrared spectroscopy (FTIR) and gel permeation chromatography (GPC). After 20 days of cultivation with PHB film, Massilia sp. JJY02 achieved approximately 90% PHB degradation at 28 °C. All the novel strains were capable of producing carotenoid-type pigments and indole-acetic acid (IAA). Among them, Massilia sp. JJY03 and JJY04 showed phosphate solubilization activity. This study demonstrated that soil bacteria from eggplant have both PHB-degrading and plant growth promoting capabilities, marking the first instance of showing that species of Massilia can degrade PHB.

Possibilities and prospects of bioplastics production from agri-waste using bacterial communities: Finding a silver-lining in waste management

To meet the need of the growing global population, the modern agriculture faces tremendous challenges to produce more food as well as fiber, timber, biofuels, etc.; hence generates more waste. This continuous growth of agricultural waste (agri-waste) and its management strategies have drawn the attention worldwide because of its severe environmental impacts including air, soil and water pollution. Similarly, growing concerns about the sustainable future have fuelled the development of biopolymers, substances occurring in and/or produced by living organisms, as substitute for different synthetic and harmful polymers, especially petroleum-based plastics. Now, the components of agri-waste offer encouraging opportunities for the production of bioplastics through mechanical and microbial procedures. Even the microbial, both bacterial and fungal, system results in lower energy consumption and better eco-friendly alternatives. The review mainly concentrates on cataloging and understanding the bacterial 'input' in developing bioplastics from diverse agri-waste. Especially, the bacteria like Cupriavidus necator, Chromatium vinosum, and Pseudomonas aeruginosa produce short- and medium-chain length poly(3-hydroxyalkanote) (P3HB) polymers using starch (from corn and potato waste), and cellulose (from sugarcane bagasse, corn husks waste). Similarly, C. necator, and transformant Wautersia eutropha produce P3HB polymer using lipid-based components (such as palm oil waste). Important to note that, the synthesis of these polymers are interconnected with the bacterial general metabolic activities, for example Krebs cycle, glycolysis cycle, β-oxidation, calvin cycle, de novo fatty acid syntheses, etc. Altogether, the agri-waste is reasonably low-cost feed for the production of bioplastics using bacterial communities; and the whole process certainly provide an opportunity towards sustainable waste management strategy.

Organic waste-to-bioplastics: Conversion with eco-friendly technologies and approaches for sustainable environment

Petrochemical-based synthetic plastics poses a threat to humans, wildlife, marine life and the environment. Given the magnitude of eventual depletion of petrochemical sources and global environmental pollution caused by the manufacturing of synthetic plastics such as polyethylene (PET) and polypropylene (PP), it is essential to develop and adopt biopolymers as an environment friendly and cost-effective alternative to synthetic plastics. Research into bioplastics has been gaining traction as a way to create a more sustainable and eco-friendlier environment with a reduced environmental impact. Biodegradable bioplastics can have the same characteristics as traditional plastics while also offering additional benefits due to their low carbon footprint. Therefore, using organic waste from biological origin for bioplastic production not only reduces our reliance on edible feedstock but can also effectively assist with solid waste management. This review aims at providing an in-depth overview on recent developments in bioplastic-producing microorganisms, production procedures from various organic wastes using either pure or mixed microbial cultures (MMCs), microalgae, and chemical extraction methods. Low production yield and production costs are still the major bottlenecks to their deployment at industrial and commercial scale. However, their production and commercialization pose a significant challenge despite such potential. The major constraints are their production in small quantity, poor mechanical strength, lack of facilities and costly feed for industrial-scale production. This review further explores several methods for producing bioplastics with the aim of encouraging researchers and investors to explore ways to utilize these renewable resources in order to commercialize degradable bioplastics. Challenges, future prospects and Life cycle assessment of bioplastics are also highlighted. Utilizing a variety of bioplastics obtained from renewable and cost-effective sources (e.g., organic waste, agro-industrial waste, or microalgae) and determining the pertinent end-of-life option (e.g., composting or anaerobic digestion) may lead towards the right direction that assures the sustainable production of bioplastics.

Production and characterization of polyhydroxybutyrate bioplastic precursor from Parageobacillus toebii using low-cost substrates and its potential antiviral activity

There is an increasing desire for bioplastics produced from renewable resources as an alternative to their petrochemical counterparts. These biopolymers have long-unnoticed antiviral properties. This study aimed to produce and characterize bioplastics by Parageobacillus toebii using low-cost substrates and determine their antiviral activity against coxsackievirus B4. Seven low-cost substrates (bagasse, water hyacinth, rice straw, rice water, sesame husks, molasses, and corn syrup) were compared with glucose for bioplastic precursor production. The highest bioplastic produced was from water hyacinth and glucose, followed by molasses, rice straw, rice water, sesame husks, and bagasse. Water hyacinth and glucose media were further optimized to increase the bioplastic precursor yield. The optimization of the media leads to increases in bioplastic precursor yields of 1.8-fold (3.456 g/L) and 1.496-fold (2.768 g/L), respectively. These bioplastics were further characterized by thermogravimetric analysis (TGA), Fourier-transformed infrared (FTIR) spectroscopy, proton nuclear magnetic resonance (1H NMR), and gas chromatography-mass spectrometry (GC-MS). They are thermostable, and their characterizations confirm the presence of polyhydroxybutyrate. The antiviral assay showed reasonable antiviral effects for bioplastics from water hyacinth (80.33 %) and glucose (55.47 %) media at 250 μg/mL maximum non-toxic concentrations (MNTC). The present investigation demonstrates a low-cost model for producing polyhydroxybutyrate bioplastic precursor for antiviral applications.

Trends and social aspects in the management and conversion of agricultural residues into valuable resources: A comprehensive approach to counter environmental degradation, food security, and climate change

The circular economy is essential as it encourages the reuse and recycling of resources while reducing waste, which ultimately helps to reduce environmental pollution and boosts economic efficiency. The current review highlights the management of agricultural and livestock residues and their conversion into valuable resources to combat environmental degradation and improve social well-being. The current trends in converting agricultural residues into useful resources emphasize the social benefits of waste management and conversion. It also emphasizes how waste conversion can reduce environmental degradation and enhance food security. Using agricultural residues can increase soil health and agricultural output while reducing pollution, greenhouse gas emissions, and resource depletion. Promoting sustainable waste-to-resource conversion processes requires a combination of strategies that address technical, economic, social, and environmental aspects. These multiple strategies are highlighted along with prospects and considerations.

A review of microalgae biofilm as an eco-friendly approach to bioplastics, promoting environmental sustainability

In this comprehensive review, we delve into the challenges hindering the large-scale production of microalgae-based bioplastics, primarily focusing on economic feasibility and bioplastic quality. To address these issues, we explore the potential of microalgae biofilm cultivation as a sustainable and highly viable approach for bioplastic production. We present a proposed method for producing bioplastics using microalgae biofilm and evaluate its environmental impact using various tools such as life cycle analysis (LCA), ecological footprint analysis, resource flow analysis, and resource accounting. While pilot-scale and large-scale LCA data are limited, we utilize alternative indicators such as energy efficiency, carbon footprint, materials management, and community acceptance to predict the environmental implications of commercializing microalgae biofilm-based bioplastics. The findings of this study indicate that utilizing microalgae biofilm for bioplastic production offers significant environmental sustainability benefits. The system exhibits low energy requirements and a minimal carbon footprint. Moreover, it has the potential to address the issue of wastewater by utilizing it as a carbon source, thereby mitigating associated problems. However, it is important to acknowledge certain limitations associated with the method proposed in this review. Further research is needed to explore and engineer precise techniques for manipulating microalgae biofilm structure to optimize the accumulation of desired metabolites. This could involve employing chemical triggers, metabolic engineering, and genetic engineering to achieve the intended goals. In conclusion, this review highlights the potential of microalgae biofilm as a viable and sustainable solution for bioplastic production. While acknowledging the advantages, it also emphasizes the need for continued synthetic studies to enhance the efficiency and reliability of this approach. By addressing the identified drawbacks and maximizing the utilization of advanced techniques, we can further harness the potential of microalgae biofilm in contributing to a more environmentally friendly and economically feasible bioplastic industry.

Characterization and Process Optimization for Enhanced Production of Polyhydroxybutyrate (PHB)-Based Biodegradable Polymer from Bacillus flexus Isolated from Municipal Solid Waste Landfill Site

In recent years, there has been a growing interest in bio-based degradable plastics as an alternative to synthetic plastic. Polyhyroxybutyrate (PHB) is a macromolecule produced by bacteria as a part of their metabolism. Bacteria accumulate them as reserve materials when growing under different stress conditions. PHBs can be selected as alternatives for the production of biodegradable plastics because of their fast degradation properties when exposed to natural environmental conditions. Hence, the present study was undertaken in order to isolate the potential PHB-producing bacteria isolated from the municipal solid waste landfill site soil samples collected from the Ha’il region of Saudi Arabia to assess the production of PHB using agro-residues as a carbon source and to evaluate the growth of PHB production. In order to screen the isolates for producing PHB, a dye-based procedure was initially employed. Based on the 16S rRNA analysis of the isolates, Bacillus flexus (B. flexus) accumulated the highest amount of PHB of all the isolates. By using a UV–Vis spectrophotometer and Fourier-transform infrared spectrophotometer (FT-IR), in which a sharp absorption band at 1721.93 cm−1 (C=O stretching of ester), 1273.23 cm−1 (–CH group), multiple bands between 1000 and 1300 cm−1 (stretching of the C–O bond), 2939.53 cm−1 (–CH3 stretching), 2880.39 cm−1 (–CH2 stretching) and 3510.02 cm−1 (terminal –OH group), the extracted polymer was characterized and confirmed its structure as PHB. The highest PHB production by B. flexus was obtained after 48 h of incubation (3.9 g/L) at pH 7.0 (3.7 g/L), 35 °C (3.5 g/L) with glucose (4.1 g/L) and peptone (3.4 g/L) as carbon and nitrogen sources, respectively. As a result of the use of various cheap agricultural wastes, such as rice bran, barley bran, wheat bran, orange peel and banana peel as carbon sources, the strain was found to be capable of accumulating PHB. Using response surface methodology (RSM) for optimization of PHB synthesis using a Box–Behnken design (BBD) proved to be highly effective in increasing the polymer yield of the synthesis. With the optimum conditions obtained from RSM, PHB content can be increased by approximately 1.3-fold when compared to an unoptimized medium, resulting in a significant reduction in production costs. Thus, isolate B. flexus is a highly promising candidate for the production of industrial-size quantities of PHB from agricultural wastes and is capable of removing the environmental concerns associated with synthetic plastics from the industrial production process. Moreover, the successful production of bioplastics using a microbial culture provides a promising avenue for the large-scale production of biodegradable and renewable plastics with potential applications in various industries, including packaging, agriculture and medicine.

In-silico analysis of a halophilic bacterial isolate-Bacillus pseudomycoides SAS-B1 and its polyhydroxybutyrate production through fed-batch approach under differential salt conditions

Polyhydroxybutyrate (PHB) is a natural biopolymer and a viable substitute for petroleum-derived polymers that possess immense potential for diverse applications. In the present study, PHB was produced by a halophilic bacteria identified as Bacillus pseudomycoides SAS-B1 by 16S rRNA gene sequencing. The bacterial genome was evaluated through complete genome sequencing, which elucidated a 5,338,308 bp genome with 34.88 % of G + C content and 5660 genes. Other genome attributes were analyzed such as functional profiling, gene ontology, and metabolic pathways. Genes involved in PHB biochemical pathway were identified such as phaA, phaB, and phaC. Furthermore, sodium-dependent transporters and other ATP-binding genes were identified in the genome that may be involved in sodium uptake during saline conditions. The PHB production by B. pseudomycoides SAS-B1 was examined under differential salt conditions. The PHB yield was increased from 3.14 ± 0.02 g/L to 6.12 ± 0.04 g/L when salinity was increased upto 20 g/L with intermittent feeding of glucose and corn steep liquor. FTIR, NMR, and GC-MS studies elucidated the presence of desired functional groups, molecular structure, and monomeric compositions of PHB respectively. Further, TGA revealed the thermal stability of the recovered PHB upto (220-230) °C and has a crystallinity index of upto 33 ± 0.5 % as confirmed by XRD analysis.

One-Step Oxidation of Orange Peel Waste to Carbon Feedstock for Bacterial Production of Polyhydroxybutyrate

Orange peels are an abundant food waste stream that can be converted into useful products, such as polyhydroxyalkanoates (PHAs). Limonene, however, is a key barrier to building a successful biopolymer synthesis from orange peels as it inhibits microbial growth. We designed a one-pot oxidation system that releases the sugars from orange peels while eliminating limonene through superoxide (O2• -) generated from potassium superoxide (KO2). The optimum conditions were found to be treatment with 0.05 M KO2 for 1 h, where 55% of the sugars present in orange peels were released and recovered. The orange peel sugars were then used, directly, as a carbon source for polyhydroxybutyrate (PHB) production by engineered Escherichia coli. Cell growth was improved in the presence of the orange peel liquor with 3 w/v% exhibiting 90-100% cell viability. The bacterial production of PHB using orange peel liquor led to 1.7-3.0 g/L cell dry weight and 136-393 mg (8-13 w/w%) ultra-high molecular weight PHB content (Mw of ~1900 kDa) during a 24 to 96 h fermentation period. The comprehensive thermal characterization of the isolated PHBs revealed polymeric properties similar to PHBs resulting from pure glucose or fructose. Our one-pot oxidation process for liberating sugars and eliminating inhibitory compounds is an efficient and easy method to release sugars from orange peels and eliminate limonene, or residual limonene post limonene extraction, and shows great promise for extracting sugars from other complex biomass materials.

Paraburkholderia tagetis sp. nov., a novel species isolated from roots of Tagetes patula enhances the growth and yield of Solanum lycopersicum L. (tomato)

A multifunctional, Gram-stain-negative, aerobic, motile by flagella, short-rod shaped bacteria, designated strain RG36^T was isolated from roots of marigold plant (Tagetes patula) sampled at Dongguk University, Republic of Korea. A 16S rRNA sequences indicated that the closest phylogenetic neighbors were Paraburkholderia acidiphila 7Q-K02^T (99.0%) and Paraburkholderia sacchari IPT101^T (98.9%) of the family Burkholderiaceae. The draft genome size was 8.52 Mb (63.7% GC). The genome contained 7,381 coding sequences. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values of strain RG36^T with its most closely related species were only 83.1-88.7 and 27.6-36.7%, respectively. Strain RG36^T contained Q-8 as the major respiratory quinone and its main fatty acids (>10%) were C_16:0, C_17:0 cyclo, C_19:0 cyclo ω8c, and summed feature 8 (comprising C_18:1 ω7c and/or C_18:1 ω6c). Strain RG36^T accumulates polyhydroxybutyrates (PHB) and exhibits multiple plant growth-promoting properties including production of indole-3-acetic acid (IAA), siderophores, protease, phosphate solubilization, and harboring gene clusters for its multifunctional properties. A pot experiment was conducted to evaluate the effect of PGPR on the growth of Solanum lycopersicum L. (Tomato). Result also confirmed the ability of strain RG36^T to promote tomato plant growth, especially it increases the yield of tomatoes. Structural assessment of the bioplastic by Fourier transform infrared (FTIR), nuclear magnetic resonance (NMR), and GC-MS spectroscopy, which confirmed the structure of the polymer as PHB. Our study revealed the potential of strain RG36^T to promote the growth of tomato plant and fruit yield by stimulating the various phytohormones, which could be use as bio-fertilizers to reduce the use of chemical fertilizers and promotes sustainable agricultural production. The phenotypic, chemotaxonomic and phylogenetic data, and genome analysis showed that strain RG36^T represents a novel species of the genus Paraburkholderia, for which the name Paraburkholderia tagetis sp. nov. is proposed. The type strain is RG36^T (=KACC 22685^T = TBRC 15696^T).

Production and optimization of bioplastic (Polyhydroxybutyrate) from Bacillus cereus strain SH-02 using response surface methodology

Background

Polyhydroxybutyrate (PHB) is a biopolymer formed by some microbes in response to excess carbon sources or essential nutrient depletion. PHBs are entirely biodegradable into CO2 and H2O under aerobic and anaerobic conditions. It has several applications in various fields such as medicine, pharmacy, agriculture, and food packaging due to its biocompatibility and nontoxicity nature.

Result

In the present study, PHB-producing bacterium was isolated from the Dirout channel at Assiut Governorate. This isolate was characterized phenotypically and genetically as Bacillus cereus SH-02 (OM992297). According to one-way ANOVA test, the maximum PHB content was observed after 72 h of incubation at 35 °C using glucose and peptone as carbon and nitrogen source. Response surface methodology (RSM) was used to study the interactive effects of glucose concentration, peptone concentration, and pH on PHB production. This result proved that all variables have a significant effect on PHB production either independently or in the interaction with each other. The optimized medium conditions with the constraint to maximize PHB content and concentration were 22.315 g/L glucose, and 15.625 g/L peptone at pH 7.048. The maximum PHB content and concentration were 3100.799 mg/L and 28.799% which was close to the actual value (3051 mg/l and 28.7%). The polymer was identified as PHB using FTIR, NMR, and mass spectrometry. FT-IR analysis showed a strong band at 1724 cm− 1 which attributed to the ester group’s carbonyl while NMR analysis has different peaks at 169.15, 67.6, 40.77, and 19.75 ppm that were corresponding to carbonyl, methine, methylene, and methyl resonance. Mass spectroscopy exhibited molecular weight for methyl 3- hydroxybutyric acid.

Conclusion

PHB–producing strain was identified as Bacillus cereus SH-02 (OM992297). Under optimum conditions from RSM analysis, the maximum PHB content and concentration of this strain can reach (3100.799 mg/L and 28.799%); respectively. FTIR, NMR, and Mass spectrometry were used to confirm the polymer as PHB. Our results demonstrated that optimization using RSM is one of the strategies used for reducing the production cost. RSM can determine the optimal factors to produce the polymer in a better way and in a larger quantity without consuming time.

Polyhydroxybutyrate (PHB)-Based Biodegradable Polymer from Agromyces indicus: Enhanced Production, Characterization, and Optimization

Recently, there has been significant interest in bio-based degradable plastics owing to their potential as a green and sustainable alternative to synthetic plastics due to their biodegradable properties. Polyhydroxybutyrate (PHB) is a biodegradable polymer that is produced by bacteria and archaea as carbon and energy reserves. Due to its rapid degradation in natural environments, it can be considered a biodegradable plastic alternative. In the present study, a dye-based procedure was used to screen PHB-producing bacteria isolated from mangrove soil samples. Among the seven isolates, Agromyces indicus (A. indicus), identified by means of 16S rRNA analysis, accumulated the highest amount of PHB. The extracted polymer was characterized by a UV–Vis spectrophotometer, Fourier-transform infrared (FTIR) spectroscopy, and for the presence of the phbB gene, which confirmed the structure of the polymer as PHB. The maximum PHB production by A. indicus was achieved after 96 h of incubation at a pH of 8.0 and 35 °C in the presence of 2% NaCl, with glucose and peptone as the carbon and nitrogen sources, respectively. The strain was found to be capable of accumulating PHB when various cheap agricultural wastes, such as rice, barley, corn, and wheat bran, were used as the carbon sources. The response surface methodology (RSM) through the central composite design (CCD) for optimizing the PHB synthesis was found to be highly efficient at augmenting the polymer yields. As a result of the optimum conditions obtained from the RSM, this strain can increase the PHB content by approximately 1.4-fold when compared with an unoptimized medium, which would substantially lower the production cost. Therefore, the isolate A. indicus strain B2 may be regarded as one of the best candidates for the industrial production of PHB from agricultural wastes, and it can remove the environmental concerns associated with synthetic plastic.