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For: Zhang W, Chen Y, Li D. Drug-Target Interaction Prediction through Label Propagation with Linear Neighborhood Information. Molecules 2017;22:molecules22122056. [PMID: 29186828 PMCID: PMC6149680 DOI: 10.3390/molecules22122056] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 11/19/2017] [Accepted: 11/20/2017] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
Dhiwar PS, Purawarga Matada GS, Pal R, Singh E, Ghara A, Maji L, Sengupta S, Andhale G. An assessment of EGFR and HER2 inhibitors with structure activity relationship of fused pyrimidine derivatives for breast cancer: a brief review. J Biomol Struct Dyn 2024;42:1564-1581. [PMID: 37158086 DOI: 10.1080/07391102.2023.2204351] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 03/30/2023] [Indexed: 05/10/2023]
2
Wang W, Yu M, Sun B, Li J, Liu D, Zhang H, Wang X, Zhou Y. SMGCN: Multiple Similarity and Multiple Kernel Fusion Based Graph Convolutional Neural Network for Drug-Target Interactions Prediction. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2024;21:143-154. [PMID: 38051618 DOI: 10.1109/tcbb.2023.3339645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
3
Abdul Raheem AK, Dhannoon BN. Comprehensive Review on Drug-target Interaction Prediction - Latest Developments and Overview. Curr Drug Discov Technol 2024;21:e010923220652. [PMID: 37680152 DOI: 10.2174/1570163820666230901160043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 05/29/2023] [Accepted: 07/18/2023] [Indexed: 09/09/2023]
4
Chen J, Zhang L, Cheng K, Jin B, Lu X, Che C. Predicting Drug-Target Interaction Via Self-Supervised Learning. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2023;20:2781-2789. [PMID: 35230952 DOI: 10.1109/tcbb.2022.3153963] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
5
Shen Y, Liu JX, Yin MM, Zheng CH, Gao YL. BMPMDA: Prediction of MiRNA-Disease Associations Using a Space Projection Model Based on Block Matrix. Interdiscip Sci 2023;15:88-99. [PMID: 36335274 DOI: 10.1007/s12539-022-00542-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Revised: 10/13/2022] [Accepted: 10/14/2022] [Indexed: 11/07/2022]
6
Huang D, He H, Ouyang J, Zhao C, Dong X, Xie J. Small molecule drug and biotech drug interaction prediction based on multi-modal representation learning. BMC Bioinformatics 2022;23:561. [PMID: 36575376 PMCID: PMC9793529 DOI: 10.1186/s12859-022-05101-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 12/06/2022] [Indexed: 12/28/2022]  Open
7
Qian Y, Ding Y, Zou Q, Guo F. Identification of drug-side effect association via restricted Boltzmann machines with penalized term. Brief Bioinform 2022;23:6762741. [PMID: 36259601 DOI: 10.1093/bib/bbac458] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 09/09/2022] [Accepted: 09/25/2022] [Indexed: 12/14/2022]  Open
8
Chen L, Lin D, Xu H, Li J, Lin L. WLLP: A weighted reconstruction-based linear label propagation algorithm for predicting potential therapeutic agents for COVID-19. Front Microbiol 2022;13:1040252. [PMID: 36466666 PMCID: PMC9713947 DOI: 10.3389/fmicb.2022.1040252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 10/06/2022] [Indexed: 11/18/2022]  Open
9
MSF-UBRW: An Improved Unbalanced Bi-Random Walk Method to Infer Human lncRNA-Disease Associations. Genes (Basel) 2022;13:genes13112032. [DOI: 10.3390/genes13112032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 10/24/2022] [Accepted: 10/28/2022] [Indexed: 11/06/2022]  Open
10
Hu J, Gao J, Fang X, Liu Z, Wang F, Huang W, Wu H, Zhao G. DTSyn: a dual-transformer-based neural network to predict synergistic drug combinations. Brief Bioinform 2022;23:6652782. [PMID: 35915050 DOI: 10.1093/bib/bbac302] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 06/23/2022] [Accepted: 07/04/2022] [Indexed: 11/14/2022]  Open
11
Wang Y, Wang L, Wong L, Zhao B, Su X, Li Y, You Z. RoFDT: Identification of Drug–Target Interactions from Protein Sequence and Drug Molecular Structure Using Rotation Forest. BIOLOGY 2022;11:biology11050741. [PMID: 35625469 PMCID: PMC9138819 DOI: 10.3390/biology11050741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Revised: 05/02/2022] [Accepted: 05/06/2022] [Indexed: 11/16/2022]
12
Xie G, Jiang J, Sun Y. LDA-LNSUBRW: lncRNA-Disease Association Prediction Based on Linear Neighborhood Similarity and Unbalanced bi-Random Walk. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2022;19:989-997. [PMID: 32870798 DOI: 10.1109/tcbb.2020.3020595] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
13
Xie G, Li J, Gu G, Sun Y, Lin Z, Zhu Y, Wang W. BGMSDDA: a bipartite graph diffusion algorithm with multiple similarity integration for drug-disease association prediction. Mol Omics 2021;17:997-1011. [PMID: 34610633 DOI: 10.1039/d1mo00237f] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
14
Wu X, Zeng W, Lin F, Zhou X. NeuRank: learning to rank with neural networks for drug-target interaction prediction. BMC Bioinformatics 2021;22:567. [PMID: 34836495 PMCID: PMC8620576 DOI: 10.1186/s12859-021-04476-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 11/08/2021] [Indexed: 01/09/2023]  Open
15
Identification of drug-target interactions via multi-view graph regularized link propagation model. Neurocomputing 2021. [DOI: 10.1016/j.neucom.2021.05.100] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
16
Predicting circRNA-disease associations based on autoencoder and graph embedding. Inf Sci (N Y) 2021. [DOI: 10.1016/j.ins.2021.04.073] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
17
Wang J, Wang W, Yan C, Luo J, Zhang G. Predicting Drug-Disease Association Based on Ensemble Strategy. Front Genet 2021;12:666575. [PMID: 34012464 PMCID: PMC8128144 DOI: 10.3389/fgene.2021.666575] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 03/23/2021] [Indexed: 12/29/2022]  Open
18
An Ensemble Learning-Based Method for Inferring Drug-Target Interactions Combining Protein Sequences and Drug Fingerprints. BIOMED RESEARCH INTERNATIONAL 2021;2021:9933873. [PMID: 33987446 PMCID: PMC8093043 DOI: 10.1155/2021/9933873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/14/2021] [Accepted: 04/16/2021] [Indexed: 11/24/2022]
19
Wang A, Wang M. Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Logistic Matrix Factorization. BIOMED RESEARCH INTERNATIONAL 2021;2021:5599263. [PMID: 33855072 PMCID: PMC8019634 DOI: 10.1155/2021/5599263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 03/06/2021] [Accepted: 03/13/2021] [Indexed: 11/18/2022]
20
Zhang W, Li Z, Guo W, Yang W, Huang F. A Fast Linear Neighborhood Similarity-Based Network Link Inference Method to Predict MicroRNA-Disease Associations. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021;18:405-415. [PMID: 31369383 DOI: 10.1109/tcbb.2019.2931546] [Citation(s) in RCA: 62] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
21
Ding Y, Tang J, Guo F. The Computational Models of Drug-target Interaction Prediction. Protein Pept Lett 2020;27:348-358. [PMID: 30968771 DOI: 10.2174/0929866526666190410124110] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Revised: 02/22/2019] [Accepted: 04/02/2019] [Indexed: 12/19/2022]
22
Chu Y, Shan X, Chen T, Jiang M, Wang Y, Wang Q, Salahub DR, Xiong Y, Wei DQ. DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method. Brief Bioinform 2020;22:5910189. [PMID: 32964234 DOI: 10.1093/bib/bbaa205] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 08/06/2020] [Accepted: 08/10/2020] [Indexed: 12/20/2022]  Open
23
Identification of Drug–Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion. Knowl Based Syst 2020. [DOI: 10.1016/j.knosys.2020.106254] [Citation(s) in RCA: 71] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
24
A Novel Triple Matrix Factorization Method for Detecting Drug-Side Effect Association Based on Kernel Target Alignment. BIOMED RESEARCH INTERNATIONAL 2020;2020:4675395. [PMID: 32596314 PMCID: PMC7275954 DOI: 10.1155/2020/4675395] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Accepted: 04/08/2020] [Indexed: 01/01/2023]
25
Incorporating chemical sub-structures and protein evolutionary information for inferring drug-target interactions. Sci Rep 2020;10:6641. [PMID: 32313024 PMCID: PMC7171114 DOI: 10.1038/s41598-020-62891-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 03/12/2020] [Indexed: 01/29/2023]  Open
26
Huang F, Qiu Y, Li Q, Liu S, Ni F. Predicting Drug-Disease Associations via Multi-Task Learning Based on Collective Matrix Factorization. Front Bioeng Biotechnol 2020;8:218. [PMID: 32373595 PMCID: PMC7179666 DOI: 10.3389/fbioe.2020.00218] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 03/04/2020] [Indexed: 12/30/2022]  Open
27
Pliakos K, Vens C. Drug-target interaction prediction with tree-ensemble learning and output space reconstruction. BMC Bioinformatics 2020;21:49. [PMID: 32033537 PMCID: PMC7006075 DOI: 10.1186/s12859-020-3379-z] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 01/21/2020] [Indexed: 12/21/2022]  Open
28
Bagherian M, Sabeti E, Wang K, Sartor MA, Nikolovska-Coleska Z, Najarian K. Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. Brief Bioinform 2020;22:247-269. [PMID: 31950972 PMCID: PMC7820849 DOI: 10.1093/bib/bbz157] [Citation(s) in RCA: 148] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 11/01/2019] [Accepted: 11/07/2019] [Indexed: 12/12/2022]  Open
29
Chu Y, Kaushik AC, Wang X, Wang W, Zhang Y, Shan X, Salahub DR, Xiong Y, Wei DQ. DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Brief Bioinform 2019;22:451-462. [PMID: 31885041 DOI: 10.1093/bib/bbz152] [Citation(s) in RCA: 100] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2019] [Revised: 11/01/2019] [Accepted: 11/04/2019] [Indexed: 12/18/2022]  Open
30
Zhang W, Tang G, Zhou S, Niu Y. LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination. BMC Genomics 2019;20:946. [PMID: 31856716 PMCID: PMC6923828 DOI: 10.1186/s12864-019-6284-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
31
Zhang W, Lin W, Zhang D, Wang S, Shi J, Niu Y. Recent Advances in the Machine Learning-Based Drug-Target Interaction Prediction. Curr Drug Metab 2019;20:194-202. [PMID: 30129407 DOI: 10.2174/1389200219666180821094047] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 01/18/2018] [Accepted: 03/19/2018] [Indexed: 12/28/2022]
32
Ding Y, Tang J, Guo F. Identification of drug–target interactions via fuzzy bipartite local model. Neural Comput Appl 2019. [DOI: 10.1007/s00521-019-04569-z] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
33
Wang Y, Nie C, Zang T, Wang Y. Predicting circRNA-Disease Associations Based on circRNA Expression Similarity and Functional Similarity. Front Genet 2019;10:832. [PMID: 31572444 PMCID: PMC6751509 DOI: 10.3389/fgene.2019.00832] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 08/13/2019] [Indexed: 12/19/2022]  Open
34
Predicting human disease-associated circRNAs based on locality-constrained linear coding. Genomics 2019;112:1335-1342. [PMID: 31394170 DOI: 10.1016/j.ygeno.2019.08.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Revised: 08/01/2019] [Accepted: 08/02/2019] [Indexed: 12/12/2022]
35
Xia LY, Yang ZY, Zhang H, Liang Y. Improved Prediction of Drug-Target Interactions Using Self-Paced Learning with Collaborative Matrix Factorization. J Chem Inf Model 2019;59:3340-3351. [PMID: 31260620 DOI: 10.1021/acs.jcim.9b00408] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
36
Su R, Wu H, Xu B, Liu X, Wei L. Developing a Multi-Dose Computational Model for Drug-Induced Hepatotoxicity Prediction Based on Toxicogenomics Data. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2019;16:1231-1239. [PMID: 30040651 DOI: 10.1109/tcbb.2018.2858756] [Citation(s) in RCA: 85] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
37
Pan Z, Zhang H, Liang C, Li G, Xiao Q, Ding P, Luo J. Self-Weighted Multi-Kernel Multi-Label Learning for Potential miRNA-Disease Association Prediction. MOLECULAR THERAPY-NUCLEIC ACIDS 2019;17:414-423. [PMID: 31319245 PMCID: PMC6637211 DOI: 10.1016/j.omtn.2019.06.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 05/22/2019] [Accepted: 06/12/2019] [Indexed: 11/23/2022]
38
Zhao Q, Yu H, Ji M, Zhao Y, Chen X. Computational Model Development of Drug-Target Interaction Prediction: A Review. Curr Protein Pept Sci 2019;20:492-494. [DOI: 10.2174/1389203720666190123164310] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 01/16/2019] [Accepted: 01/18/2019] [Indexed: 12/14/2022]
39
Identification of drug-side effect association via multiple information integration with centered kernel alignment. Neurocomputing 2019. [DOI: 10.1016/j.neucom.2018.10.028] [Citation(s) in RCA: 148] [Impact Index Per Article: 29.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
40
Tang G, Shi J, Wu W, Yue X, Zhang W. Sequence-based bacterial small RNAs prediction using ensemble learning strategies. BMC Bioinformatics 2018;19:503. [PMID: 30577759 PMCID: PMC6302447 DOI: 10.1186/s12859-018-2535-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
41
Wang M, Tang C, Chen J. Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Matrix Completion. BIOMED RESEARCH INTERNATIONAL 2018;2018:1425608. [PMID: 30627536 PMCID: PMC6304580 DOI: 10.1155/2018/1425608] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 09/03/2018] [Accepted: 10/24/2018] [Indexed: 01/16/2023]
42
Manifold regularized matrix factorization for drug-drug interaction prediction. J Biomed Inform 2018;88:90-97. [DOI: 10.1016/j.jbi.2018.11.005] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Revised: 11/03/2018] [Accepted: 11/11/2018] [Indexed: 12/20/2022]
43
Qu Y, Zhang H, Lyu C, Liang C. LLCMDA: A Novel Method for Predicting miRNA Gene and Disease Relationship Based on Locality-Constrained Linear Coding. Front Genet 2018;9:576. [PMID: 30555511 PMCID: PMC6282048 DOI: 10.3389/fgene.2018.00576] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Accepted: 11/08/2018] [Indexed: 01/03/2023]  Open
44
PWCDA: Path Weighted Method for Predicting circRNA-Disease Associations. Int J Mol Sci 2018;19:ijms19113410. [PMID: 30384427 PMCID: PMC6274797 DOI: 10.3390/ijms19113410] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 10/25/2018] [Accepted: 10/26/2018] [Indexed: 12/22/2022]  Open
45
Yu SP, Liang C, Xiao Q, Li GH, Ding PJ, Luo JW. GLNMDA: a novel method for miRNA-disease association prediction based on global linear neighborhoods. RNA Biol 2018;15:1215-1227. [PMID: 30244645 PMCID: PMC6284594 DOI: 10.1080/15476286.2018.1521210] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Revised: 08/22/2018] [Accepted: 08/24/2018] [Indexed: 01/11/2023]  Open
46
Zhang W, Yue X, Huang F, Liu R, Chen Y, Ruan C. Predicting drug-disease associations and their therapeutic function based on the drug-disease association bipartite network. Methods 2018;145:51-59. [DOI: 10.1016/j.ymeth.2018.06.001] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2018] [Revised: 05/15/2018] [Accepted: 06/01/2018] [Indexed: 02/01/2023]  Open
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Deepika SS, Geetha TV. A meta-learning framework using representation learning to predict drug-drug interaction. J Biomed Inform 2018;84:136-147. [DOI: 10.1016/j.jbi.2018.06.015] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2018] [Revised: 06/22/2018] [Accepted: 06/25/2018] [Indexed: 01/24/2023]
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Qu Y, Zhang H, Liang C, Ding P, Luo J. SNMDA: A novel method for predicting microRNA-disease associations based on sparse neighbourhood. J Cell Mol Med 2018;22:5109-5120. [PMID: 30030889 PMCID: PMC6156399 DOI: 10.1111/jcmm.13799] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 05/25/2018] [Accepted: 06/21/2018] [Indexed: 01/05/2023]  Open
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Niu M, Li Y, Wang C, Han K. RFAmyloid: A Web Server for Predicting Amyloid Proteins. Int J Mol Sci 2018;19:ijms19072071. [PMID: 30013015 PMCID: PMC6073578 DOI: 10.3390/ijms19072071] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Revised: 07/10/2018] [Accepted: 07/12/2018] [Indexed: 12/22/2022]  Open
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Wei L, Chen H, Su R. M6APred-EL: A Sequence-Based Predictor for Identifying N6-methyladenosine Sites Using Ensemble Learning. MOLECULAR THERAPY-NUCLEIC ACIDS 2018;12:635-644. [PMID: 30081234 PMCID: PMC6082921 DOI: 10.1016/j.omtn.2018.07.004] [Citation(s) in RCA: 136] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Revised: 07/03/2018] [Accepted: 07/03/2018] [Indexed: 12/28/2022]
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