Effect of Leaf Occlusion on Leaf Area Index Inversion of Maize Using UAV–LiDAR Data

Effects of Salt Tolerance Training on Multidimensional Root Distribution and Root-Shoot Characteristics of Summer Maize under Brackish Water Irrigation

To investigate the impact of brackish water irrigation on the multidimensional root distribution and root-shoot characteristics of summer maize under different salt-tolerance-training modes, a micro-plot experiment was conducted from June to October in 2022 at the experimental station in Hohai University, China. Freshwater irrigation was used as the control (CK), and different concentrations of brackish water (S0: 0.08 g·L-1, S1: 2.0 g·L-1, S2: 4.0 g·L-1, S3: 6.0 g·L-1) were irrigated at six-leaf stage, ten-leaf stage, and tasseling stage, constituting different salt tolerance training modes, referred to as S0-2-3, S0-3-3, S1-2-3, S1-3-3, S2-2-3, and S2-3-3. The results showed that although their fine root length density (FRLD) increased, the S0-2-3 and S0-3-3 treatments reduced the limit of root extension in the horizontal direction, causing the roots to be mainly distributed near the plants. This resulted in decreased leaf area and biomass accumulation, ultimately leading to significant yield reduction. Additionally, the S2-2-3 and S2-3-3 treatments stimulated the adaptive mechanism of maize roots, resulting in boosted fine root growth to increase the FRLD and develop into deeper soil layers. However, due to the prolonged exposure to a high level of salinity, their roots below 30 cm depth senesced prematurely, leading to an inhibition in shoot growth and also resulting in yield reduction of 10.99% and 11.75%, compared to CK, respectively. Furthermore, the S1-2-3 and S1-3-3 treatments produced more reasonable distributions of FRLD, which did not boost fine root growth but established fewer weak areas (FLRD < 0.66 cm-3) in their root systems. Moreover, the S1-2-3 treatment contributed to increasing leaf development and biomass accumulation, compared to CK, whereas it allowed for minimizing yield reduction. Therefore, our study proposed the S1-2-3 treatment as the recommended training mode for summer maize while utilizing brackish water resources.

Phenotyping of Silique Morphology in Oilseed Rape Using Skeletonization with Hierarchical Segmentation

Silique morphology is an important trait that determines the yield output of oilseed rape (Brassica napus L.). Segmenting siliques and quantifying traits are challenging because of the complicated structure of an oilseed rape plant at the reproductive stage. This study aims to develop an accurate method in which a skeletonization algorithm was combined with the hierarchical segmentation (SHS) algorithm to separate siliques from the whole plant using 3-dimensional (3D) point clouds. We combined the L1-median skeleton with the random sample consensus for iteratively extracting skeleton points and optimized the skeleton based on information such as distance, angle, and direction from neighborhood points. Density-based spatial clustering of applications with noise and weighted unidirectional graph were used to achieve hierarchical segmentation of siliques. Using the SHS, we quantified the silique number (SN), silique length (SL), and silique volume (SV) automatically based on the geometric rules. The proposed method was tested with the oilseed rape plants at the mature stage grown in a greenhouse and field. We found that our method showed good performance in silique segmentation and phenotypic extraction with R ² values of 0.922 and 0.934 for SN and total SL, respectively. Additionally, SN, total SL, and total SV had the statistical significance of correlations with the yield of a plant, with R values of 0.935, 0.916, and 0.897, respectively. Overall, the SHS algorithm is accurate, efficient, and robust for the segmentation of siliques and extraction of silique morphological parameters, which is promising for high-throughput silique phenotyping in oilseed rape breeding.

Estimation of cotton canopy parameters based on unmanned aerial vehicle (UAV) oblique photography

BACKGROUND

The technology of cotton defoliation is essential for mechanical cotton harvesting. Agricultural unmanned aerial vehicle (UAV) spraying has the advantages of low cost, high efficiency and no mechanical damage to cotton and has been favored and widely used by cotton planters in China. However, there are also some problems of low cotton defoliation rates and high impurity rates caused by unclear spraying amounts of cotton defoliants. The chemical rate recommendation and application should be based upon crop canopy volume rather than on land area. Plant height and leaf area index (LAI) is directly connected to plant canopy structure. Accurate dynamic monitoring of plant height and LAI provides important information for evaluating cotton growth and production. The traditional method to obtain plant height and LAI was s a time-consuming and labor-intensive task. It is very difficult and unrealistic to use the traditional measurement method to make the temporal and spatial variation map of plant height and LAI of large cotton fields. With the application of UAV in agriculture, remote sensing by UAV is currently regarded as an effective technology for monitoring and estimating plant height and LAI.

RESULTS

In this paper, we used UAV RGB photos to build dense point clouds to estimate cotton plant height and LAI following cotton defoliant spraying. The results indicate that the proposed method was able to dynamically monitor the changes in the LAI of cotton at different times. At 3 days after defoliant spraying, the correlation between the plant height estimated based on the constructed dense point cloud and the measured plant height was strong, with [Formula: see text] and RMSE values of 0.962 and 0.913, respectively. At 10 days after defoliant spraying, the correlation became weaker over time, with [Formula: see text] and RMSE values of 0.018 and 0.027, respectively. Comparing the actual manually measured LAI with the estimated LAI based on the dense point cloud, the [Formula: see text] and RMSE were 0.872 and 0.814 and 0.132 and 0.173 at 3 and 10 days after defoliant spraying, respectively.

CONCLUSIONS

Dense point cloud construction based on UAV remote sensing is a potential alternative to plant height and LAI estimation. The accuracy of LAI estimation can be improved by considering both plant height and planting density.

Individual Maize Location and Height Estimation in Field from UAV-Borne LiDAR and RGB Images

Crop height is an essential parameter used to monitor overall crop growth, forecast crop yield, and estimate crop biomass in precision agriculture. However, individual maize segmentation is the prerequisite for precision field monitoring, which is a challenging task because the maize stalks are usually occluded by leaves between adjacent plants, especially when they grow up. In this study, we proposed a novel method that combined seedling detection and clustering algorithms to segment individual maize plants from UAV-borne LiDAR and RGB images. As seedlings emerged, the images collected by an RGB camera mounted on a UAV platform were processed and used to generate a digital orthophoto map. Based on this orthophoto, the location of each maize seedling was identified by extra-green detection and morphological filtering. A seed point set was then generated and used as input for the clustering algorithm. The fuzzy C-means clustering algorithm was used to segment individual maize plants. We computed the difference between the maximum elevation value of the LiDAR point cloud and the average elevation value of the bare digital terrain model (DTM) at each corresponding area for individual plant height estimation. The results revealed that our height estimation approach test on two cultivars produced the accuracy with R2 greater than 0.95, with the mean square error (RMSE) of 4.55 cm, 3.04 cm, and 3.29 cm, as well as the mean absolute percentage error (MAPE) of 3.75%, 0.91%, and 0.98% at three different growth stages, respectively. Our approach, utilizing UAV-borne LiDAR and RGB cameras, demonstrated promising performance for estimating maize height and its field position.

Tool for the Establishment of Agro-Management Zones Using GIS Techniques for Precision Farming in Egypt

Agro-management zones recently became the backbone of modern agriculture. Delineating management zones for Variable-Rate Fertilization (VRF) can provide important ecological benefits and better sustainability of the new Egyptian farming projects. This article aims to represent an approach for delineating management zones using Spatial Multicriteria Evaluation (SMCE) within irrigated peanut pivot situated at the eastern Nile Delta, Egypt. The results indicated that soil data, such as soil texture, soil type, the elevation of the landscape, and slope, allow for sampling the study area into similar classes and in smaller units, along with a crop productivity map. The effects of the variability in soil characteristics within the field on Peanut yields are predicted by the soil suitability model. In addition, final management zones map a varied amount of nutrients that could be added to different pivot zones. In conclusion, mapping soil units with a sufficient number of field observations within each class provided an acceptable accuracy, and a good spatial distribution of the suitability classification was achieved. Hence, agro-management zones are essentially needed for policymakers in a specific field in order to furnish an evaluation about the transformations at a territorial scale and for studying the strategies to realize environmental sustainability and to reduce the territorial impacts.

UAV Oblique Imagery with an Adaptive Micro-Terrain Model for Estimation of Leaf Area Index and Height of Maize Canopy from 3D Point Clouds

Leaf area index (LAI) and height are two critical measures of maize crops that are used in ecophysiological and morphological studies for growth evaluation, health assessment, and yield prediction. However, mapping spatial and temporal variability of LAI in fields using handheld tools and traditional techniques is a tedious and costly pointwise operation that provides information only within limited areas. The objective of this study was to evaluate the reliability of mapping LAI and height of maize canopy from 3D point clouds generated from UAV oblique imagery with the adaptive micro-terrain model. The experiment was carried out in a field planted with three cultivars having different canopy shapes and four replicates covering a total area of 48 × 36 m. RGB images in nadir and oblique view were acquired from the maize field at six different time slots during the growing season. Images were processed by Agisoft Metashape to generate 3D point clouds using the structure from motion method and were later processed by MATLAB to obtain clean canopy structure, including height and density. The LAI was estimated by a multivariate linear regression model using crop canopy descriptors derived from the 3D point cloud, which account for height and leaf density distribution along the canopy height. A simulation analysis based on the Sine function effectively demonstrated the micro-terrain model from point clouds. For the ground truth data, a randomized block design with 24 sample areas was used to manually measure LAI, height, N-pen data, and yield during the growing season. It was found that canopy height data from the 3D point clouds has a relatively strong correlation (R2 = 0.89, 0.86, 0.78) with the manual measurement for three cultivars with CH90. The proposed methodology allows a cost-effective high-resolution mapping of in-field LAI index extraction through UAV 3D data to be used as an alternative to the conventional LAI assessments even in inaccessible regions.

Investigation of Root Morphological Traits Using 2D-Imaging among Diverse Soybeans (Glycine max L.)

Roots are the most important plant organ for absorbing essential elements, such as water and nutrients for living. To develop new climate-resilient soybean cultivars, it is essential to know the variation in root morphological traits (RMT) among diverse soybean for selecting superior root attribute genotypes. However, information on root morphological characteristics is poorly understood due to difficulty in root data collection and visualization. Thus, to overcome this problem in root research, we used a 2-dimensional (2D) root image in identifying RMT among diverse soybeans in this research. We assessed RMT in the vegetative growth stage (V2) of 372 soybean cultivars propagated in polyvinyl chloride pipes. The phenotypic investigation revealed significant variability among the 372 soybean cultivars for RMT. In particular, RMT such as the average diameter (AD), surface area (SA), link average length (LAL), and link average diameter (LAD) showed significant variability. On the contrary RMT, as with total length (TL) and link average branching angle (LABA), did not show differences. Furthermore, in the distribution analysis, normal distribution was observed for all RMT; at the same time, difference was observed in the distribution curve depending on individual RMT. Thus, based on overall RMT analysis values, the top 5% and bottom 5% ranked genotypes were selected. Furthermore, genotypes that showed most consistent for overall RMT have ranked accordingly. This ultimately helps to identify four genotypes (IT 16538, IT 199127, IT 165432, IT 165282) ranked in the highest 5%, whereas nine genotypes (IT 23305, IT 208266, IT 165208, IT 156289, IT 165405, IT 165019, IT 165839, IT 203565, IT 181034) ranked in the lowest 5% for RMT. Moreover, principal component analysis clustered cultivar 2, cultivar 160, and cultivar 274 into one group with high RMT values, and cultivar 335, cultivar 40, and cultivar 249 with low RMT values. The RMT correlation results revealed significantly positive TL and AD correlations with SA (r = 0.96) and LAD (r = 0.85), respectively. However, negative correlations (r = −0.43) were observed between TL and AD. Similarly, AD showed a negative correlation (r = −0.22) with SA. Thus, this result suggests that TL is a more vital factor than AD for determining SA compositions.

Comparison of UAS-Based Structure-from-Motion and LiDAR for Structural Characterization of Short Broadacre Crops

The use of small unmanned aerial system (UAS)-based structure-from-motion (SfM; photogrammetry) and LiDAR point clouds has been widely discussed in the remote sensing community. Here, we compared multiple aspects of the SfM and the LiDAR point clouds, collected concurrently in five UAS flights experimental fields of a short crop (snap bean), in order to explore how well the SfM approach performs compared with LiDAR for crop phenotyping. The main methods include calculating the cloud-to-mesh distance (C2M) maps between the preprocessed point clouds, as well as computing a multiscale model-to-model cloud comparison (M3C2) distance maps between the derived digital elevation models (DEMs) and crop height models (CHMs). We also evaluated the crop height and the row width from the CHMs and compared them with field measurements for one of the data sets. Both SfM and LiDAR point clouds achieved an average RMSE of ~0.02 m for crop height and an average RMSE of ~0.05 m for row width. The qualitative and quantitative analyses provided proof that the SfM approach is comparable to LiDAR under the same UAS flight settings. However, its altimetric accuracy largely relied on the number and distribution of the ground control points.

Canopy occupation volume as an indicator of canopy photosynthetic capacity

Leaf angle and leaf area index together influence canopy light interception and canopy photosynthesis. However, so far, there is no effective method to identify the optimal combination of these two parameters for canopy photosynthesis. In this study, first a robust high-throughput method for accurate segmentation of maize organs based on 3D point clouds data was developed, then the segmented plant organs were used to generate new 3D point clouds for the canopy of altered architectures. With this, we simulated the synergistic effect of leaf area and leaf angle on canopy photosynthesis. The results show that, compared to the traditional parameters describing the canopy photosynthesis including leaf area index, facet angle and canopy coverage, a new parameter - the canopy occupation volume (COV) - can better explain the variations of canopy photosynthetic capacity. Specifically, COV can explain > 79% variations of canopy photosynthesis generated by changing leaf angle and > 84% variations of canopy photosynthesis generated by changing leaf area. As COV can be calculated in a high-throughput manner based on the canopy point clouds, it can be used to evaluate canopy architecture in breeding and agronomic research.

Assessing the Self-Recovery Ability of Maize after Lodging Using UAV-LiDAR Data

Lodging is one of the main problems in maize production. Assessing the self-recovery ability of maize plants after lodging at different growth stages is of great significance for yield loss assessment and agricultural insurance claims. The objective of this study was to quantitatively analyse the effects of different growth stages and lodging severity on the self-recovery ability of maize plants using UAV-LiDAR data. The multi-temporal point cloud data obtained by the RIEGL VUX-1 laser scanner were used to construct the canopy height model of the lodging maize. Then the estimated canopy heights of the maize at different growth stages and lodging severity were obtained. The measured values were used to verify the accuracy of the canopy height estimation and to invert the corresponding lodging angle. After verifying the accuracy of the canopy height, the accuracy parameter of the tasselling stage was R2 = 0.9824, root mean square error (RMSE) = 0.0613 m, and nRMSE = 3.745%. That of the filling stage was R2 = 0.9470, RMSE = 0.1294 m, and nRMSE = 9.889%, which showed that the UAV-LiDAR could accurately estimate the height of the maize canopy. By comparing the yield, canopy height, and lodging angle of maize, it was found that the self-recovery ability of maize at the tasselling stage was stronger than that at the filling stage, but the yield reduction rate was 14.16~26.37% higher than that at the filling stage. The more serious the damage of the lodging is to the roots and support structure of the maize plant, the weaker is the self-recovery ability. Therefore, the self-recovery ability of the stem tilt was the strongest, while that of root lodging and root stem folding was the weakest. The results showed that the UAV-LiDAR could effectively assess the self-recovery ability of maize after lodging.

Estimation of LAI with the LiDAR Technology: A Review

Leaf area index (LAI) is an important vegetation parameter. Active light detection and ranging (LiDAR) technology has been widely used to estimate vegetation LAI. In this study, LiDAR technology, LAI retrieval and validation methods, and impact factors are reviewed. First, the paper introduces types of LiDAR systems and LiDAR data preprocessing methods. After introducing the application of different LiDAR systems, LAI retrieval methods are described. Subsequently, the review discusses various LiDAR LAI validation schemes and limitations in LiDAR LAI validation. Finally, factors affecting LAI estimation are analyzed. The review presents that LAI is mainly estimated from LiDAR data by means of the correlation with the gap fraction and contact frequency, and also from the regression of forest biophysical parameters derived from LiDAR. Terrestrial laser scanning (TLS) can be used to effectively estimate the LAI and vertical foliage profile (VFP) within plots, but this method is affected by clumping, occlusion, voxel size, and woody material. Airborne laser scanning (ALS) covers relatively large areas in a spatially contiguous manner. However, the capability of describing the within-canopy structure is limited, and the accuracy of LAI estimation with ALS is affected by the height threshold and sampling size, and types of return. Spaceborne laser scanning (SLS) provides the global LAI and VFP, and the accuracy of estimation is affected by the footprint size and topography. The use of LiDAR instruments for the retrieval of the LAI and VFP has increased; however, current LiDAR LAI validation studies are mostly performed at local scales. Future research should explore new methods to invert LAI and VFP from LiDAR and enhance the quantitative analysis and large-scale validation of the parameters.

Estimation of maize plant height and leaf area index dynamics using an unmanned aerial vehicle with oblique and nadir photography

BACKGROUND AND AIMS

High-throughput phenotyping is a limitation in plant genetics and breeding due to large-scale experiments in the field. Unmanned aerial vehicles (UAVs) can help to extract plant phenotypic traits rapidly and non-destructively with high efficiency. The general aim of this study is to estimate the dynamic plant height and leaf area index (LAI) by nadir and oblique photography with a UAV, and to compare the integrity of the established three-dimensional (3-D) canopy by these two methods.

METHODS

Images were captured by a high-resolution digital RGB camera mounted on a UAV at five stages with nadir and oblique photography, and processed by Agisoft Metashape to generate point clouds, orthomosaic maps and digital surface models. Individual plots were segmented according to their positions in the experimental design layout. The plant height of each inbred line was calculated automatically by a reference ground method. The LAI was calculated by the 3-D voxel method. The reconstructed canopy was sliced into different layers to compare leaf area density obtained from oblique and nadir photography.

KEY RESULTS

Good agreements were found for plant height between nadir photography, oblique photography and manual measurement during the whole growing season. The estimated LAI by oblique photography correlated better with measured LAI (slope = 0.87, R2 = 0.67), compared with that of nadir photography (slope = 0.74, R2 = 0.56). The total number of point clouds obtained by oblique photography was about 2.7-3.1 times than those by nadir photography. Leaf area density calculated by nadir photography was much less than that obtained by oblique photography, especially near the plant base.

CONCLUSIONS

Plant height and LAI can be extracted automatically and efficiently by both photography methods. Oblique photography can provide intensive point clouds and relatively complete canopy information at low cost. The reconstructed 3-D profile of the plant canopy can be easily recognized by oblique photography.

Collision Avoidance of Hexacopter UAV Based on LiDAR Data in Dynamic Environment

A reactive three-dimensional maneuver strategy for a multirotor Unmanned Aerial Vehicle (UAV) is proposed based on the collision cone approach to avoid potential collision with a single moving obstacle detected by an onboard sensor. A Light Detection And Ranging (LiDAR) system is assumed to be mounted on a hexacopter to obtain the obstacle information from the collected point clouds. The collision cone approach is enhanced to appropriately deal with the moving obstacle with the help of a Kalman filter. The filter estimates the position, velocity, and acceleration of the obstacle by using the LiDAR data as the associated measurement. The obstacle state estimate is utilized to predict the future trajectories of the moving obstacle. The collision detection and obstacle avoidance maneuver decisions are made considering the predicted trajectory of the obstacle. Numerical simulations, including a Monte Carlo campaign, are conducted to verify the performance of the proposed collision avoidance algorithm.

Image-Based Dynamic Quantification of Aboveground Structure of Sugar Beet in Field

Sugar beet is one of the main crops for sugar production in the world. With the increasing demand for sugar, more desirable sugar beet genotypes need to be cultivated through plant breeding programs. Precise plant phenotyping in the field still remains challenge. In this study, structure from motion (SFM) approach was used to reconstruct a three-dimensional (3D) model for sugar beets from 20 genotypes at three growth stages in the field. An automatic data processing pipeline was developed to process point clouds of sugar beet including preprocessing, coordinates correction, filtering and segmentation of point cloud of individual plant. Phenotypic traits were also automatically extracted regarding plant height, maximum canopy area, convex hull volume, total leaf area and individual leaf length. Total leaf area and convex hull volume were adopted to explore the relationship with biomass. The results showed that high correlations between measured and estimated values with R2 > 0.8. Statistical analyses between biomass and extracted traits proved that both convex hull volume and total leaf area can predict biomass well. The proposed pipeline can estimate sugar beet traits precisely in the field and provide a basis for sugar beet breeding.

Sensor Reliability in Cyber-Physical Systems Using Internet-of-Things Data: A Review and Case Study

Nowadays, reliability of sensors is one of the most important challenges for widespread application of Internet-of-things data in key emerging fields such as the automotive and manufacturing sectors. This paper presents a brief review of the main research and innovation actions at the European level, as well as some on-going research related to sensor reliability in cyber-physical systems (CPS). The research reported in this paper is also focused on the design of a procedure for evaluating the reliability of Internet-of-Things sensors in a cyber-physical system. The results of a case study of sensor reliability assessment in an autonomous driving scenario for the automotive sector are also shown. A co-simulation framework is designed in order to enable real-time interaction between virtual and real sensors. The case study consists of an IoT LiDAR-based collaborative map in order to assess the CPS-based co-simulation framework. Specifically, the sensor chosen is the Ibeo Lux 4-layer LiDAR sensor with IoT added capabilities. The modeling library for predicting error with machine learning methods is implemented at a local level, and a self-learning-procedure for decision-making based on Q-learning runs at a global level. The study supporting the experimental evaluation of the co-simulation framework is presented using simulated and real data. The results demonstrate the effectiveness of the proposed method for increasing sensor reliability in cyber-physical systems using Internet-of-Things data.